Citrus Sinensis ID: 007338
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.934 | 0.590 | 0.698 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.935 | 0.605 | 0.691 | 0.0 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
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Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/570 (69%), Positives = 474/570 (83%), Gaps = 3/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
+G+ TS+L++LARRFA+L+GP+IPIIGEG
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEG 740
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Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/570 (69%), Positives = 473/570 (82%), Gaps = 2/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+ D +LGPEK VHGYP+GA+INFV+WS DG+ ++FSVRVDEEDN S
Sbjct: 155 MSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQDGRHLSFSVRVDEEDNTSG- 213
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+WIAD E+GEA+PLF+SP+I LNA+F SFVWVNNSTLL+ TIP SR PP+K VP
Sbjct: 214 KLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPS 273
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNE N++ R +LLKDEYD LFDYY T+QLVL S DGT K G PAVYT++
Sbjct: 274 GPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLASFDGTVKPIGPPAVYTSI 333
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD KY++I+S+HRPYSY VPC RF +KV++WT DG+ +RELCDLP AEDIP+ +SV
Sbjct: 334 DPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIRELCDLPLAEDIPIATSSV 393
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G RSI WR DKP+ LYWVE QD GDA VEVSPRDI+Y + AEP GE+PEILHKLDLR
Sbjct: 394 RKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMENAEPINGEQPEILHKLDLR 453
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ SWCD+SLALV E+WYKT +TRTW++ P KDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 454 YAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILFDRSSEDVYSDPGSPMLRR 513
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAK+KK+ DE YILLNG G TPEGN+PFLDLFDINTGSKERIW+S++EKY+E
Sbjct: 514 TAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDINTGSKERIWQSDKEKYYE 572
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ + + ++ L +LKILTSKESKTE TQY++ WP KK QIT+FPHPYP LASL
Sbjct: 573 TVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEKKQVQITDFPHPYPQLASL 632
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
KEMI+YQRKDGV LTATLYLPPGYD S+DGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 633 YKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 692
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
G+ TS L++LAR FA+L+GP+IPIIGEG
Sbjct: 693 PGIGATSPLLWLARGFAILSGPTIPIIGEG 722
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Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | ||||||
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.937 | 0.623 | 0.738 | 0.0 | |
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.935 | 0.591 | 0.736 | 0.0 | |
| 449436423 | 970 | PREDICTED: probable glutamyl endopeptida | 0.937 | 0.586 | 0.722 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.970 | 0.650 | 0.707 | 0.0 | |
| 449436421 | 971 | PREDICTED: probable glutamyl endopeptida | 0.937 | 0.585 | 0.722 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.937 | 0.588 | 0.725 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.616 | 0.689 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.935 | 0.590 | 0.7 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.935 | 0.591 | 0.7 | 0.0 | |
| 2275219 | 955 | unknown protein [Arabidopsis thaliana] | 0.935 | 0.594 | 0.7 | 0.0 |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/570 (73%), Positives = 496/570 (87%), Gaps = 1/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+N SS
Sbjct: 109 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEEN-SSS 167
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 168 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 227
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 228 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 287
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 288 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 347
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 348 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 407
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 408 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 467
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 468 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 527
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 528 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 587
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 588 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 647
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
+G+ PTS+L++LARRFA+L+GP+IPIIGEG
Sbjct: 648 AGIGPTSALLWLARRFAILSGPTIPIIGEG 677
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/570 (73%), Positives = 495/570 (86%), Gaps = 2/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+ SS
Sbjct: 167 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEN--SSS 224
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 225 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 284
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 285 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 344
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 345 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 404
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 405 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 464
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 465 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 524
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 525 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 584
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 585 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 644
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 645 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 704
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
+G+ PTS+L++LARRFA+L+GP+IPIIGEG
Sbjct: 705 AGIGPTSALLWLARRFAILSGPTIPIIGEG 734
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436423|ref|XP_004135992.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] gi|449507837|ref|XP_004163143.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/573 (72%), Positives = 493/573 (86%), Gaps = 4/573 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 477
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 537
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEG 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/595 (70%), Positives = 500/595 (84%), Gaps = 6/595 (1%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD +LGPEKEVHGYPDGAKINFV+WS DG+ +AFS+RV EEDN SS
Sbjct: 107 MSFYTGIGIHQLMPDGTLGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDN-SSS 165
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SPD+ LNAVF +FVWV+NS+LL+ TIPSSR DPPKK VP
Sbjct: 166 KLRVWVANMETGQARPLFQSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPS 225
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN++ R +LLKDEYDE LFDYYTT+Q+VL SLDGTAK+ G PAVYT++
Sbjct: 226 GPKIQSNEQKNVVQVRTFQDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSM 285
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQ Y+LI+S+HRPYS+ VP RF +KV+VWTTDGK VRELCDLP AEDIP+ +SV
Sbjct: 286 DPSPDQNYLLISSIHRPYSFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSV 345
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G R+I+WRADKPSTLYW E QD GDA VEVSPRDI+YTQPAEP EGE+PEILHKLDLR
Sbjct: 346 RKGKRAINWRADKPSTLYWAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLR 405
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ + WCDDSLALV E+WYKT +TRTW++ PGSKD +PR+LFDR E+VYSDPGSPM+ R
Sbjct: 406 YGGIYWCDDSLALVYESWYKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRR 465
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LL G G TPEGNIPFLDLFDINTGSKERIWES++E+Y+E
Sbjct: 466 TPAGTYVIAKIKKENDEGTYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYE 525
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ E D+ L++L+ILTSKESKTE QY I WP KK+ QITNFPHPYP LASL
Sbjct: 526 TVVALMLDYEEGDLLLDRLQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASL 585
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPN+F
Sbjct: 586 QKEMIRYQRKDGVQLTATLYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKF 645
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG-LWSNWFQVQRLLLKKLFDVEWLIQ 594
+G+ TS+L++ FA+L+GP+IPIIGEG +N V++L+ VE +IQ
Sbjct: 646 AGIGSTSALLW----FAILSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQ 696
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436421|ref|XP_004135991.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] gi|449507834|ref|XP_004163142.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/573 (72%), Positives = 493/573 (86%), Gaps = 4/573 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 477
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 537
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEG 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/580 (72%), Positives = 491/580 (84%), Gaps = 11/580 (1%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD LGPE+E+HGYPDGAKINFV+WS DG+ +AFS+R DEEDN SS
Sbjct: 162 MSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEEDN-SSS 220
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SP++ LNAVF +FVWV+NSTLL+ IPSSR D PKK +VP
Sbjct: 221 KLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKKPLVPS 280
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN+I R +LLKDEYDE LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 281 GPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPAVYTSM 340
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+L++S+HRPYS+ VPC RF +KV+VWTTDGK VRE+CDLP AEDIP+ +SV
Sbjct: 341 DPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPIAISSV 400
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMR+I+WRADKPSTLYW E QD GDA VEVSPRDIIYTQPAEP EGE+PEILHKLDLR
Sbjct: 401 RKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILHKLDLR 460
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ P SKDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 461 YGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGSPMLRR 520
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE YILLNG G T EGNIPFLDLFDIN GSKERIWES +EKY+E
Sbjct: 521 TPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEKEKYYE 580
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T V+L+ E D+ L++LK+LTSKESKTE TQY I WP KK QITNFPHPYP LASL
Sbjct: 581 TVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYPQLASL 640
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMIKYQR DGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 641 QKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 700
Query: 541 SGMTPTSSLIFLARR----------FAVLAGPSIPIIGEG 570
+G+ PTS+L++LARR FA+L+GP+IPIIGEG
Sbjct: 701 AGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEG 740
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/595 (68%), Positives = 500/595 (84%), Gaps = 2/595 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH +LPD +LGPE E+HG+P+GAKINFV+WSPD + ++FS+RV+EED+ +S
Sbjct: 165 MSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEEDSNTS- 223
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KL VW+AD ETG+A+PLF+SPD+ LNAVF ++VWV+NSTLL+ TIPS+R PPKK +VP
Sbjct: 224 KLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKPLVPG 283
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKNII R +LLKDEYDE LFDYY T+QLVL SLDGT KDFG PA+YT++
Sbjct: 284 GPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAIYTSL 343
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD+KY++I SMHRPYS+ VPC RF +KV++W+ DGK VRE+CDLP AEDIP+ NSV
Sbjct: 344 DPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPITSNSV 403
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDIIY+QPAE EGE+P ILHKLDLR
Sbjct: 404 RKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHKLDLR 463
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLA V E+WYKT + +TW+V PGS+DV PR+LFDR E+VYSDPGSPM+ R
Sbjct: 464 YGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSPMLRR 523
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT +IAKIKK DE YI+LNG G TPEGN+PFLDLFDINTGSKERIWES++EKYFE
Sbjct: 524 TQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKEKYFE 583
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ L++LKIL SKESKTE TQY+ +SWP KK Q+TNFPHPYP LASL
Sbjct: 584 TVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQLASL 643
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGY+ S DGPLPCL W+YP ++KSKDAA QVRGSPNEF
Sbjct: 644 QKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGSPNEF 703
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG-LWSNWFQVQRLLLKKLFDVEWLIQ 594
+G+ TS+L++LA+RFA+L+GP+IPIIGEG + +N V++L+ VE +I+
Sbjct: 704 AGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYVEQLVASAEAAVEEVIR 758
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/570 (70%), Positives = 476/570 (83%), Gaps = 2/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF+S DI LNA+F SFVW++NSTLL+ TIPSSR DPPKK +VP
Sbjct: 232 KPVVWVADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC R +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPST+YW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TAAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
+G+ TS+L++LARRFA+L+GP+IPIIGEG
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEG 741
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/570 (70%), Positives = 475/570 (83%), Gaps = 2/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
+G+ TS+L++LARRFA+L+GP+IPIIGEG
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEG 741
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2275219|gb|AAB63841.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/570 (70%), Positives = 475/570 (83%), Gaps = 2/570 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570
+G+ TS+L++LARRFA+L+GP+IPIIGEG
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEG 741
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.769 | 0.583 | 0.278 | 2.2e-46 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.769 | 0.583 | 0.278 | 2.2e-46 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 2.2e-46, P = 2.2e-46
Identities = 136/488 (27%), Positives = 227/488 (46%)
Query: 85 LNAVFG-SFVWVNNSTLLI-FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142
LN + W NN TLL F I ++ + V + PK + KN R +LL
Sbjct: 160 LNGTISLDYQWANNKTLLARFVI--AQDISASQPHVSISPKTKETSGKNSP-QRTYQDLL 216
Query: 143 KDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202
K D+ LF TT+QL L L+G G P + SPD +Y+L + P+S +V
Sbjct: 217 KTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQITTPFSTQV 276
Query: 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262
F +++ +G+L+ L E P +SV G R W + +TL + +A
Sbjct: 277 KYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAATLAFTKA 336
Query: 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322
D+GD+ + RD ++ +P ++ + + R + W ++ LAL+ E K
Sbjct: 337 LDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALITERNSKAQ 394
Query: 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382
Q R + + + L +R + Y D G G + ++ + + ++
Sbjct: 395 QIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QGAKTTGLI 452
Query: 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442
G+G TP+G+ PFL + T +W+S + +V V +NL+ L+++
Sbjct: 453 HYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LNLDPLQLI 503
Query: 443 TSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502
++ES TE +L+ K S + P +QK++I ++R DGVPL+ TLYLP
Sbjct: 504 INRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPLSGTLYLP 561
Query: 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562
Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A FAV
Sbjct: 562 ANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEGFAVFDKV 620
Query: 563 SIPIIGEG 570
S+PII +G
Sbjct: 621 SMPIIAQG 628
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 2.2e-46, P = 2.2e-46
Identities = 136/488 (27%), Positives = 227/488 (46%)
Query: 85 LNAVFG-SFVWVNNSTLLI-FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142
LN + W NN TLL F I ++ + V + PK + KN R +LL
Sbjct: 160 LNGTISLDYQWANNKTLLARFVI--AQDISASQPHVSISPKTKETSGKNSP-QRTYQDLL 216
Query: 143 KDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202
K D+ LF TT+QL L L+G G P + SPD +Y+L + P+S +V
Sbjct: 217 KTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQITTPFSTQV 276
Query: 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262
F +++ +G+L+ L E P +SV G R W + +TL + +A
Sbjct: 277 KYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAATLAFTKA 336
Query: 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322
D+GD+ + RD ++ +P ++ + + R + W ++ LAL+ E K
Sbjct: 337 LDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALITERNSKAQ 394
Query: 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382
Q R + + + L +R + Y D G G + ++ + + ++
Sbjct: 395 QIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QGAKTTGLI 452
Query: 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442
G+G TP+G+ PFL + T +W+S + +V V +NL+ L+++
Sbjct: 453 HYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LNLDPLQLI 503
Query: 443 TSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502
++ES TE +L+ K S + P +QK++I ++R DGVPL+ TLYLP
Sbjct: 504 INRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPLSGTLYLP 561
Query: 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562
Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A FAV
Sbjct: 562 ANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEGFAVFDKV 620
Query: 563 SIPIIGEG 570
S+PII +G
Sbjct: 621 SMPIIAQG 628
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 607 607 0.00087 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 627 (67 KB)
Total size of DFA: 376 KB (2183 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 55.83u 0.14s 55.97t Elapsed: 00:00:03
Total cpu time: 55.83u 0.14s 55.97t Elapsed: 00:00:03
Start: Mon May 20 20:11:01 2013 End: Mon May 20 20:11:04 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.6912 | 0.9357 | 0.6055 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 99.94 | |
| PRK10115 | 686 | protease 2; Provisional | 99.93 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.82 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.82 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.81 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.81 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.81 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.77 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.77 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.75 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.71 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.67 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.66 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.56 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.56 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.52 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.48 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.47 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.35 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.28 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.01 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.94 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.93 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 98.93 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.81 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.75 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.74 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.72 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.63 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.61 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 98.49 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.44 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.43 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.41 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.3 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.24 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.23 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.22 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.21 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.18 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.17 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.15 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 98.11 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.1 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.09 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.09 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.05 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.05 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 98.01 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.0 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.99 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 97.96 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.95 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.94 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.93 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.83 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.8 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.79 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.76 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 97.72 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.72 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.69 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.69 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.66 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 97.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.63 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.58 | |
| PTZ00421 | 493 | coronin; Provisional | 97.57 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.56 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 97.55 | |
| PRK10115 | 686 | protease 2; Provisional | 97.54 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 97.49 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 97.48 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.47 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 97.46 | |
| PTZ00420 | 568 | coronin; Provisional | 97.46 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.41 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.4 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 97.37 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 97.36 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.35 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.3 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.28 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.25 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.24 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.24 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.24 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.19 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.14 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.12 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.06 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.06 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.06 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.05 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 97.05 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.05 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.04 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 96.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 96.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 96.83 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 96.73 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.7 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.66 | |
| PRK10566 | 249 | esterase; Provisional | 96.61 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.58 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 96.51 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.43 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.41 | |
| PTZ00421 | 493 | coronin; Provisional | 96.39 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.38 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 96.38 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.3 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 96.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.15 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 96.11 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 96.11 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.06 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 95.88 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.82 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 95.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.8 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.76 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 95.74 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.67 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 95.49 | |
| PTZ00420 | 568 | coronin; Provisional | 95.46 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 95.46 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.3 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 95.27 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 95.24 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.19 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 95.15 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.15 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 95.07 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.06 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 94.99 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 94.97 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 94.97 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 94.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 94.84 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 94.82 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 94.82 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 94.82 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 94.63 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 94.59 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 94.43 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 94.34 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 93.97 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 93.84 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 93.83 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 93.74 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 93.45 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 93.34 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 93.03 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 92.99 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 92.98 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 92.93 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 92.91 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 92.76 | |
| PLN00021 | 313 | chlorophyllase | 92.69 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 92.65 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 92.6 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 92.56 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 92.54 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 92.16 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 91.93 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 91.82 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 91.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 91.47 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 91.39 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 91.36 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 91.33 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 91.24 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 91.15 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 91.15 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 91.05 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 90.92 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 90.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 90.62 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 90.47 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 90.32 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 90.3 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 90.27 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 90.12 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 89.85 | |
| PLN02872 | 395 | triacylglycerol lipase | 89.59 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 89.35 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 89.26 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 89.04 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 88.9 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 88.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 88.85 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 88.22 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 88.08 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 88.07 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 87.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 87.31 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 87.15 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 87.09 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.09 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 87.06 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 87.04 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 87.02 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 86.66 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 86.58 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 86.54 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 85.57 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 85.55 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 85.37 | |
| PLN02511 | 388 | hydrolase | 85.18 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 85.08 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 84.99 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 84.98 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 84.8 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 84.73 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 84.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 83.87 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 83.41 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 83.17 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 82.74 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 82.63 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 82.24 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 82.06 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 81.41 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 81.21 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 81.0 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 80.71 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 80.46 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 80.24 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=233.96 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=124.9
Q ss_pred cccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCC
Q 007338 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (607)
Q Consensus 433 ~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y 511 (607)
.|+.+++.+++.++++.+|+++|+++. ++..+++..+........+ ++|.|+|++.||.+|+|||++|+++++.|+|
T Consensus 317 ~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~y 394 (620)
T COG1506 317 GFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKY 394 (620)
T ss_pred EEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCC
Confidence 345588999999999999999999986 5566666655555555555 9999999999999999999999999999876
Q ss_pred CCCEEEEeccCCccCcccCCccccCCCcC-CCCCCchhHHHhccCeEEEeCCCCceeccCCCC----chhhHHHHhhcHH
Q 007338 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEF-SGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWS----NWFQVQRLLLKKL 586 (607)
Q Consensus 512 ~lP~iv~~y~~~~~~~~~~~~~~g~p~~~-~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~----~~~~~~~~~~~~~ 586 (607)
|+||++||| |++. ...+.+++|.||++||+|++++..++.|||.++ ..+|+..++.|++
T Consensus 395 --P~i~~~hGG--------------P~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~ 458 (620)
T COG1506 395 --PLIVYIHGG--------------PSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLI 458 (620)
T ss_pred --CEEEEeCCC--------------CccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHH
Confidence 999998854 3321 112246789999999999997777777887763 3477778899999
Q ss_pred HHHHHHHHhcccccccc
Q 007338 587 FDVEWLIQAELLLEDTL 603 (607)
Q Consensus 587 ~~v~~~~~~~~~~~~~~ 603 (607)
++|++|++.+++|++++
T Consensus 459 ~~~~~l~~~~~~d~~ri 475 (620)
T COG1506 459 AAVDALVKLPLVDPERI 475 (620)
T ss_pred HHHHHHHhCCCcChHHe
Confidence 99999999999999886
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=223.07 Aligned_cols=149 Identities=15% Similarity=0.047 Sum_probs=110.1
Q ss_pred ccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCE
Q 007338 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (607)
Q Consensus 436 ~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (607)
++++.++++.++...|+++|.+++.+++.+.|+..+.+..+.....+|.+++++.||.+|+++|++|++....+ +.|+
T Consensus 370 ~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~--~~P~ 447 (686)
T PRK10115 370 PETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKG--HNPL 447 (686)
T ss_pred CCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCC--CCCE
Confidence 56678999999999999999999988888888876533333334589999999999999999777655543333 3499
Q ss_pred EEEeccCCccCcccCCccccCCCcCCCCC-CchhHHHhccCeEEEeCCCCceeccCCCCchhhHH--------HHhhcHH
Q 007338 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQ--------RLLLKKL 586 (607)
Q Consensus 516 iv~~y~~~~~~~~~~~~~~g~p~~~~~~~-~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~--------~~~~~~~ 586 (607)
||++||+ |..-..+. ....|+|+++||+|+.++- +|.|+ +|+.|.+ +..+|++
T Consensus 448 ll~~hGg--------------~~~~~~p~f~~~~~~l~~rG~~v~~~n~---RGs~g-~G~~w~~~g~~~~k~~~~~D~~ 509 (686)
T PRK10115 448 LVYGYGS--------------YGASIDADFSFSRLSLLDRGFVYAIVHV---RGGGE-LGQQWYEDGKFLKKKNTFNDYL 509 (686)
T ss_pred EEEEECC--------------CCCCCCCCccHHHHHHHHCCcEEEEEEc---CCCCc-cCHHHHHhhhhhcCCCcHHHHH
Confidence 9999864 22111111 2346899999999999332 33322 4444433 5688999
Q ss_pred HHHHHHHHhccccccccc
Q 007338 587 FDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 587 ~~v~~~~~~~~~~~~~~~ 604 (607)
++++|||++|++|+++|.
T Consensus 510 a~~~~Lv~~g~~d~~rl~ 527 (686)
T PRK10115 510 DACDALLKLGYGSPSLCY 527 (686)
T ss_pred HHHHHHHHcCCCChHHeE
Confidence 999999999999999875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=188.19 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=165.2
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
+.++||+-|+. +++.++++. ....+..|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 177 ~~~~l~~~d~d----g~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYD----GYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCC----CCCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 45689999986 778888884 23368899999999999998754 456899999999999999976544
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. ...+.|||||+.++++... . ...+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~-----------------------~-----------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSK-----------------------T-----------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcC-----------------------C-----------------------CCcEEEEE
Confidence 2 4579999998866654210 0 12479999
Q ss_pred eC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++ +++.++++... ....+.|||||++|+|++.... ..+||++++++++.++|+..
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~------------- 329 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWE------------- 329 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecC-------------
Confidence 99 66888887654 4468999999999999975421 13799999999888887541
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
......+.|||||+. +++....+ + ...+++++. ..| +.+.|+.. .....+.|||||+.|++....
T Consensus 330 ~~~~~~~~~SpDG~~-Ia~~~~~~-g--------~~~I~~~dl--~~g-~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~- 394 (429)
T PRK03629 330 GSQNQDADVSSDGKF-MVMVSSNG-G--------QQHIAKQDL--ATG-GVQVLTDT-FLDETPSIAPNGTMVIYSSSQ- 394 (429)
T ss_pred CCCccCEEECCCCCE-EEEEEccC-C--------CceEEEEEC--CCC-CeEEeCCC-CCCCCceECCCCCEEEEEEcC-
Confidence 011235899999985 44443221 1 124566553 333 55666532 234579999999998887643
Q ss_pred ccceEEEEEcCCCCCCCceEe
Q 007338 321 TSQTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 321 ~~~~~l~~~dl~~~~~~~~~l 341 (607)
.+...|+++++++ ...+.|
T Consensus 395 ~~~~~l~~~~~~G--~~~~~l 413 (429)
T PRK03629 395 GMGSVLNLVSTDG--RFKARL 413 (429)
T ss_pred CCceEEEEEECCC--CCeEEC
Confidence 3446799999987 344555
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=186.43 Aligned_cols=232 Identities=11% Similarity=0.064 Sum_probs=162.7
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE-EEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
..+||+-|.. +.+.++++. .+ ....|+|||||++ ++|.+.. .+..+||++|+++|+.++|+..+.
T Consensus 168 ~~~l~~~d~d----g~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 168 KSNIVLADYT----LTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred cceEEEECCC----CCceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCC
Confidence 4689998875 667887873 33 6778999999997 6666653 346799999999999999986443
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. ...+.||||++.++++... + ...+||++
T Consensus 234 ~-----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~ 262 (419)
T PRK04043 234 M-----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLY 262 (419)
T ss_pred c-----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEE
Confidence 2 3468899997655543210 0 13689999
Q ss_pred eC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++ +|+.++||... ......|||||++|+|+++... ..+||++|+++++.++++..
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~------------- 319 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFH------------- 319 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccC-------------
Confidence 99 56889998654 3457899999999999986432 23899999999998887641
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
+...+.|||||+. ++|+......+. ......+++++. .+++.+.|+... ....|.|||||+.|++....
T Consensus 320 --g~~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~- 388 (419)
T PRK04043 320 --GKNNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYL- 388 (419)
T ss_pred --CCcCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEcc-
Confidence 1123689999995 455543221110 011246777763 333677777643 34469999999988877543
Q ss_pred ccceEEEEEcCCCC
Q 007338 321 TSQTRTWLVCPGSK 334 (607)
Q Consensus 321 ~~~~~l~~~dl~~~ 334 (607)
.+...|+.+++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 45568999999983
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=188.49 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=159.0
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE--EEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
-+.||+-+.. +++.++||. .......|+|||||+. ++|++.+ .+..+||++++++|+.++|+..+
T Consensus 164 ~~~l~~~d~d----G~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 164 QGELWSVDYD----GQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred cceEEEEcCC----CCCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecCC
Confidence 4689999986 889999985 2335789999999988 5567765 46789999999999999998765
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
.. ...+.|||||+.|+++.... | ..++|+
T Consensus 231 g~-----~~~p~wSPDG~~Laf~s~~~---------------------g-------------------------~~di~~ 259 (428)
T PRK01029 231 GN-----QLMPTFSPRKKLLAFISDRY---------------------G-------------------------NPDLFI 259 (428)
T ss_pred CC-----ccceEECCCCCEEEEEECCC---------------------C-------------------------CcceeE
Confidence 42 45799999987655542110 1 012222
Q ss_pred --EeC-C---CCeeecCCCC--ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC--CCeeEEeccCCCCC
Q 007338 162 --GSL-D---GTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (607)
Q Consensus 162 --~~~-~---g~~~~lt~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (607)
+++ . |++++|+... ....++|||||++|+|++.... ...||++++. ++..+.|+..
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~---- 325 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKK---- 325 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccC----
Confidence 233 2 3667777532 3357899999999999975321 1368998875 3556666541
Q ss_pred CCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCc
Q 007338 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (607)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~ 311 (607)
......+.|||||+. |+|....+ + ...+++++. ..| +.+.++........+.|+|||+
T Consensus 326 ---------~~~~~~p~wSPDG~~-Laf~~~~~-g--------~~~I~v~dl--~~g-~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 326 ---------YRNSSCPAWSPDGKK-IAFCSVIK-G--------VRQICVYDL--ATG-RDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ---------CCCccceeECCCCCE-EEEEEcCC-C--------CcEEEEEEC--CCC-CeEEccCCCCCccceEECCCCC
Confidence 112235899999985 55553221 1 235677663 333 6667765544567899999999
Q ss_pred EEEEEEeccccceEEEEEcCCCCCCCceEee
Q 007338 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~ 342 (607)
.|++.... .+...||++|+++ ++.+.|+
T Consensus 384 ~L~f~~~~-~g~~~L~~vdl~~--g~~~~Lt 411 (428)
T PRK01029 384 HLVYSAGN-SNESELYLISLIT--KKTRKIV 411 (428)
T ss_pred EEEEEECC-CCCceEEEEECCC--CCEEEee
Confidence 88776432 3456899999998 4556665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-19 Score=185.43 Aligned_cols=214 Identities=15% Similarity=0.173 Sum_probs=153.1
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
..+||+.+.. ++..++++.. ...+..|+|||||++|+|++.. .+..+||++|+++|+.++++..+..
T Consensus 181 ~~~l~~~d~d----g~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQD----GANVRYLTDG--SSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCC----CCCcEEEecC--CCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 4689999875 7888899843 3368899999999999999864 4568999999999999999765442
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
...+.||||++.++++... + ...+||+++
T Consensus 248 -----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEE
Confidence 4688999998765553210 0 135899999
Q ss_pred C-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+ +++.++|+... ....+.|||||++|+|++.... ..+||++|+++++.++|+.
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~--------------- 331 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISF--------------- 331 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeec---------------
Confidence 9 56888888654 3457899999999999975321 2379999998876665532
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.......+.|||||+.|++.... .
T Consensus 332 -------------------------------------------------------~~~~~~~~~~SpdG~~ia~~~~~-~ 355 (435)
T PRK05137 332 -------------------------------------------------------GGGRYSTPVWSPRGDLIAFTKQG-G 355 (435)
T ss_pred -------------------------------------------------------CCCcccCeEECCCCCEEEEEEcC-C
Confidence 01122347788998887765432 2
Q ss_pred cceEEEEEcCCCCCCCceEeeec-cccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
+..+|+++|++++ ..+.++.. ... .+.|+|||+.|+|....
T Consensus 356 ~~~~i~~~d~~~~--~~~~lt~~~~~~---------~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 356 GQFSIGVMKPDGS--GERILTSGFLVE---------GPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CceEEEEEECCCC--ceEeccCCCCCC---------CCeECCCCCEEEEEEcc
Confidence 3468999999773 44555432 112 28999999999887653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-18 Score=176.97 Aligned_cols=227 Identities=17% Similarity=0.152 Sum_probs=156.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+-+.. +...++++.. ...+..|+|||||++|||.+.. .+..+||++|+++|+.++++..+..
T Consensus 176 ~~L~~~D~d----G~~~~~l~~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g~- 241 (427)
T PRK02889 176 YQLQISDAD----GQNAQSALSS--PEPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKGS- 241 (427)
T ss_pred cEEEEECCC----CCCceEeccC--CCCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 478888864 6677788743 3358899999999999998864 3457899999999999888755432
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.||||++.++++... + ...+||.+++
T Consensus 242 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~ 271 (427)
T PRK02889 242 ----NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNA 271 (427)
T ss_pred ----ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEEC
Confidence 4579999998765553110 0 1358999998
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
.++.++|+... ....+.|||||++|+|++.... ...||.+++.+++.++++... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~ 328 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------S 328 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------C
Confidence 45788887643 3457899999999999875321 237999999888877775310 1
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
....++|||||+. ++|.... ++ ...+++++. ..| +.+.++.. .....+.|+|||+.|++.... .+
T Consensus 329 ~~~~~~~SpDG~~-Ia~~s~~-~g--------~~~I~v~d~--~~g-~~~~lt~~-~~~~~p~~spdg~~l~~~~~~-~g 393 (427)
T PRK02889 329 YNTSPRISPDGKL-LAYISRV-GG--------AFKLYVQDL--ATG-QVTALTDT-TRDESPSFAPNGRYILYATQQ-GG 393 (427)
T ss_pred CcCceEECCCCCE-EEEEEcc-CC--------cEEEEEEEC--CCC-CeEEccCC-CCccCceECCCCCEEEEEEec-CC
Confidence 1235899999995 4454321 11 124666663 233 55555543 234679999999988876543 34
Q ss_pred ceEEEEEcCCC
Q 007338 323 QTRTWLVCPGS 333 (607)
Q Consensus 323 ~~~l~~~dl~~ 333 (607)
...|+.+++++
T Consensus 394 ~~~l~~~~~~g 404 (427)
T PRK02889 394 RSVLAAVSSDG 404 (427)
T ss_pred CEEEEEEECCC
Confidence 56899999976
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-18 Score=177.24 Aligned_cols=215 Identities=15% Similarity=0.095 Sum_probs=151.3
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
...||+.+.. +.+.++|+.. ...+..|+|||||++|+|++.. .+..+||++|+.+|+.++++..+..
T Consensus 197 ~~~l~i~d~d----G~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~ 263 (448)
T PRK04792 197 PYQLMIADYD----GYNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI 263 (448)
T ss_pred ceEEEEEeCC----CCCceEeecC--CCcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC
Confidence 3578888865 6677888743 3358899999999999999864 4568999999999999888755431
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
...+.||||++.++++... + ...+||+++
T Consensus 264 -----~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d 292 (448)
T PRK04792 264 -----NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVD 292 (448)
T ss_pred -----cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEE
Confidence 3578999998866553210 0 135899999
Q ss_pred C-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+ +++.++|+... ....++|||||++|+|++.... ..+||++|+++++.+.|+.
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~--------------- 347 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTF--------------- 347 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEec---------------
Confidence 9 66888887653 3457899999999999975321 2379999998886665531
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.......+.|||||+.|++.... .
T Consensus 348 -------------------------------------------------------~g~~~~~~~~SpDG~~l~~~~~~-~ 371 (448)
T PRK04792 348 -------------------------------------------------------EGEQNLGGSITPDGRSMIMVNRT-N 371 (448)
T ss_pred -------------------------------------------------------CCCCCcCeeECCCCCEEEEEEec-C
Confidence 00011236789998877765432 3
Q ss_pred cceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
+..+||++|+++ +..+.|+...... .+.|+|||+.|+|....
T Consensus 372 g~~~I~~~dl~~--g~~~~lt~~~~d~--------~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 372 GKFNIARQDLET--GAMQVLTSTRLDE--------SPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CceEEEEEECCC--CCeEEccCCCCCC--------CceECCCCCEEEEEEec
Confidence 456899999988 4556665322111 17899999999887754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=174.81 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=167.3
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe-E-EEEEecCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST-L-LIFTIPSSRRD 111 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~-~-l~~~~~~~~~~ 111 (607)
..+.++ +++|||+....... ......+||++|.+|+++++||..... ...+.|||||+ + +++.+..
T Consensus 140 g~~g~~--~~~iayv~~~~~~~-~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~---- 207 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSD-TELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYK---- 207 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcc-cccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEcc----
Confidence 446666 89999998752110 002357999999999999999965442 46899999975 3 2232110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-ceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-~~~~~~~SpDg~~i 189 (607)
. ...+||++++ +|+.++|+... ....++|||||++|
T Consensus 208 ----------------------------~--------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 208 ----------------------------L--------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred ----------------------------C--------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 0 1368999999 56888887533 33478999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEE--EeCCC---CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
+|++.... ..++|+ +++.+ ++.++|+... ......++|||||+. |+|....+
T Consensus 246 af~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~------------~~~~~~p~wSPDG~~-Laf~s~~~ 302 (428)
T PRK01029 246 AFISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEA------------FGTQGNPSFSPDGTR-LVFVSNKD 302 (428)
T ss_pred EEEECCCC----------CcceeEEEeecccCCCCcceEeecCC------------CCCcCCeEECCCCCE-EEEEECCC
Confidence 99975322 124555 45553 4556665310 011235899999995 55554321
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
+ ...+++++. ...+.+.+.++........+.|||||+.|++.... .+..+||++|+++ ++.+.|+..
T Consensus 303 -g--------~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~--g~~~~Lt~~ 369 (428)
T PRK01029 303 -G--------RPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLAT--GRDYQLTTS 369 (428)
T ss_pred -C--------CceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCC--CCeEEccCC
Confidence 1 124666543 11222455565554456789999999988876532 2446899999998 456666532
Q ss_pred c--ccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeec
Q 007338 345 V--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (607)
Q Consensus 345 ~--~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (607)
. ... +.|+|||+.|+|.....+ ... |+.+++++++.++|+..
T Consensus 370 ~~~~~~---------p~wSpDG~~L~f~~~~~g--~~~----------------L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 370 PENKES---------PSWAIDSLHLVYSAGNSN--ESE----------------LYLISLITKKTRKIVIG 413 (428)
T ss_pred CCCccc---------eEECCCCCEEEEEECCCC--Cce----------------EEEEECCCCCEEEeecC
Confidence 1 222 899999999988765321 222 34578878887777643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=176.47 Aligned_cols=234 Identities=16% Similarity=0.121 Sum_probs=161.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.|+. +++.++|+.. ...+..|+|||||++|||.+.. .+..+||++|+++|+.++++.....
T Consensus 184 ~~l~i~D~~----g~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~- 249 (433)
T PRK04922 184 YALQVADSD----GYNPQTILRS--AEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI- 249 (433)
T ss_pred EEEEEECCC----CCCceEeecC--CCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC-
Confidence 468888875 7778888843 3358899999999999998754 4567999999999999888755431
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+||++.++++... + ...+||++++
T Consensus 250 ----~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~ 279 (433)
T PRK04922 250 ----NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDL 279 (433)
T ss_pred ----ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEEC
Confidence 4578999998765553110 0 1257999999
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+|+.++++... ....++|||||++|+|++.... ...||++++.+++.++|+... .
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g-------------~ 336 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQG-------------N 336 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCC-------------C
Confidence 66888887643 3357899999999999975321 137999999988888775310 1
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
....++|||||+. +++... +++ ...+++++. .+| +.+.++... ....+.|+|||+.+++.... .+
T Consensus 337 ~~~~~~~SpDG~~-Ia~~~~-~~~--------~~~I~v~d~--~~g-~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 337 YNARASVSPDGKK-IAMVHG-SGG--------QYRIAVMDL--STG-SVRTLTPGS-LDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred CccCEEECCCCCE-EEEEEC-CCC--------ceeEEEEEC--CCC-CeEECCCCC-CCCCceECCCCCEEEEEEec-CC
Confidence 1235899999995 444432 111 124666663 233 555665433 34568999999988776543 34
Q ss_pred ceEEEEEcCCCCCCCceEee
Q 007338 323 QTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~ 342 (607)
...||++++++ ...+.+.
T Consensus 402 ~~~L~~~~~~g--~~~~~l~ 419 (433)
T PRK04922 402 RGVLAAVSTDG--RVRQRLV 419 (433)
T ss_pred ceEEEEEECCC--CceEEcc
Confidence 56899999987 3445553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=176.30 Aligned_cols=226 Identities=18% Similarity=0.178 Sum_probs=156.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.||+-++. +++.++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++.....
T Consensus 180 ~l~~~d~~----g~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~-- 244 (430)
T PRK00178 180 TLQRSDYD----GARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL-- 244 (430)
T ss_pred EEEEECCC----CCCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC--
Confidence 47777765 677788874 23357899999999999999864 3567999999999999999755431
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
...+.||||++.++++... + ...+||++++
T Consensus 245 ---~~~~~~SpDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 275 (430)
T PRK00178 245 ---NGAPAWSPDGSKLAFVLSK---------------------------------------D-------GNPEIYVMDLA 275 (430)
T ss_pred ---cCCeEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECC
Confidence 4579999998766553210 0 1258999999
Q ss_pred CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 ~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+++.++|+... ....+.|||||++|+|.+.... ...||++++.+++.++++... ..
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NY 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 56788887643 3457899999999999975422 237999999998888775310 11
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccc
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 323 (607)
...+.|||||+. +++....+ + ...+++++. .+| +.+.++... ....+.|||||+.+++.... .+.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~~-~--------~~~l~~~dl--~tg-~~~~lt~~~-~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQD-G--------NFHVAAQDL--QRG-SVRILTDTS-LDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEccC-C--------ceEEEEEEC--CCC-CEEEccCCC-CCCCceECCCCCEEEEEEec-CCc
Confidence 124799999995 55543221 1 124666663 333 556665432 33468999999988877543 345
Q ss_pred eEEEEEcCCC
Q 007338 324 TRTWLVCPGS 333 (607)
Q Consensus 324 ~~l~~~dl~~ 333 (607)
.+||++++++
T Consensus 398 ~~l~~~~~~g 407 (430)
T PRK00178 398 GVLMLVSING 407 (430)
T ss_pred eEEEEEECCC
Confidence 6899999987
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=168.24 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=166.6
Q ss_pred CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCC
Q 007338 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (607)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~ 121 (607)
..+|||++..... .....+||++|.+++..+++|..... +..+.||||++.|++....
T Consensus 165 ~~~iafv~~~~~~---~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~-------------- 222 (435)
T PRK05137 165 DTRIVYVAESGPK---NKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYA-------------- 222 (435)
T ss_pred CCeEEEEEeeCCC---CCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEec--------------
Confidence 5689999865210 01267999999999999999865442 6789999998766554210
Q ss_pred CeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCc
Q 007338 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
. ...+||++++ +|+.++|+.. .....++|||||++|+|+.....
T Consensus 223 ---------~-----------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 223 ---------N-----------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ---------C-----------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 0 1358899999 6777788743 34457899999999999864321
Q ss_pred cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEE
Q 007338 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (607)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (607)
..+||++|+++++.++|+..
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~---------------------------------------------------- 288 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDS---------------------------------------------------- 288 (435)
T ss_pred --------CceEEEEECCCCceEEccCC----------------------------------------------------
Confidence 24799999998877666430
Q ss_pred eccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCee
Q 007338 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (607)
Q Consensus 280 ~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (607)
......+.|||||+.|++.... .+..+||++|+++ +..+.++... ..+. .+.
T Consensus 289 ------------------~~~~~~~~~spDG~~i~f~s~~-~g~~~Iy~~d~~g--~~~~~lt~~~--~~~~-----~~~ 340 (435)
T PRK05137 289 ------------------PAIDTSPSYSPDGSQIVFESDR-SGSPQLYVMNADG--SNPRRISFGG--GRYS-----TPV 340 (435)
T ss_pred ------------------CCccCceeEcCCCCEEEEEECC-CCCCeEEEEECCC--CCeEEeecCC--Cccc-----CeE
Confidence 0112247888888877766532 2345899999988 4556665321 0011 278
Q ss_pred eCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCC
Q 007338 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (607)
Q Consensus 360 ~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (607)
|+|||+.|++.....+ ... +..++++++..+.++... .. ..++|+|||+
T Consensus 341 ~SpdG~~ia~~~~~~~--~~~----------------i~~~d~~~~~~~~lt~~~------~~-------~~p~~spDG~ 389 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG--QFS----------------IGVMKPDGSGERILTSGF------LV-------EGPTWAPNGR 389 (435)
T ss_pred ECCCCCEEEEEEcCCC--ceE----------------EEEEECCCCceEeccCCC------CC-------CCCeECCCCC
Confidence 9999999988764321 112 334666555544342211 00 1257899999
Q ss_pred EEEEEeeccccc--ceEEEEecCCCceeeEec
Q 007338 440 KILTSKESKTEI--TQYHILSWPLKKSSQITN 469 (607)
Q Consensus 440 ~~v~~~ss~~~p--~~l~~~~~~~~~~~~Lt~ 469 (607)
.++|........ ..||++++.+++.++|+.
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 999888765553 579999998877777764
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-16 Score=164.37 Aligned_cols=229 Identities=18% Similarity=0.198 Sum_probs=155.1
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
++|||+...... ....+||++|.+++..+++|..... ...+.|||||+.+++....
T Consensus 164 ~riayv~~~~~~----~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~--------------- 219 (429)
T PRK03629 164 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFE--------------- 219 (429)
T ss_pred CeEEEEEeeCCC----CcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEec---------------
Confidence 789998864211 3467999999999988999865432 5689999998766654210
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
. ...+||++++ +|+.++|+.. .....+.|||||++|+|+.....
T Consensus 220 --------~-----------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 220 --------S-----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------C-----------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 0 1247888888 6788887643 33457899999999999864321
Q ss_pred ccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEe
Q 007338 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (607)
..+||++|+++++.++++... .....+.|||||+. |+|....+ + ...+|.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~-------------~~~~~~~wSPDG~~-I~f~s~~~-g--------~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQN-LAYTSDQA-G--------RPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCC-------------CCcCceEECCCCCE-EEEEeCCC-C--------CceEEE
Confidence 236999999999888886521 12245899999985 55543211 1 135676
Q ss_pred ccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeee
Q 007338 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (607)
Q Consensus 281 ~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (607)
++. .+++.+.++........+.|||||+.|++.... .+..+||++|+++ ++.+.|+... .+ ..+.|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~--g~~~~Lt~~~-~~-------~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLAT--GGVQVLTDTF-LD-------ETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCC--CCeEEeCCCC-CC-------CCceE
Confidence 663 332556665444445679999999988776432 2346899999988 4566665321 11 12889
Q ss_pred CCCCCEEEEEeee
Q 007338 361 TSTGTNVIAKIKK 373 (607)
Q Consensus 361 ~~dg~~~~~~~~~ 373 (607)
+|||+.|++....
T Consensus 382 SpDG~~i~~~s~~ 394 (429)
T PRK03629 382 APNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCEEEEEEcC
Confidence 9999999988754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=166.77 Aligned_cols=206 Identities=12% Similarity=0.163 Sum_probs=140.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
++||+.++. +|+.++|+.... ....|.|||||++|+|+... .+..+||++|+++++.++||.....
T Consensus 213 ~~Iyv~dl~----tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~-------~g~~~Iy~~dl~~g~~~~LT~~~~~- 278 (419)
T PRK04043 213 PTLYKYNLY----TGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAP-------KGQPDIYLYDTNTKTLTQITNYPGI- 278 (419)
T ss_pred CEEEEEECC----CCcEEEEecCCC--cEEeeEECCCCCEEEEEEcc-------CCCcEEEEEECCCCcEEEcccCCCc-
Confidence 589999997 899999985332 46679999999999999865 4578999999999999999865431
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+|||+.++++++. + ...+||++++
T Consensus 279 ----d~~p~~SPDG~~I~F~Sdr----------------------~------------------------g~~~Iy~~dl 308 (419)
T PRK04043 279 ----DVNGNFVEDDKRIVFVSDR----------------------L------------------------GYPNIFMKKL 308 (419)
T ss_pred ----cCccEECCCCCEEEEEECC----------------------C------------------------CCceEEEEEC
Confidence 3467899998755554210 0 1358999999
Q ss_pred -CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 -DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 -~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+|+.++++..+.. ...|||||++|+|+.......+. ....+|+++|++++..+.|+... .
T Consensus 309 ~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~----~~~~~I~v~d~~~g~~~~LT~~~--------------~ 369 (419)
T PRK04043 309 NSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG----KNTFNLYLISTNSDYIRRLTANG--------------V 369 (419)
T ss_pred CCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC----CCCcEEEEEECCCCCeEECCCCC--------------C
Confidence 5688888764432 36999999999999754311100 01248999999999999987621 1
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeE
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW 306 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~w 306 (607)
...++|||||+. ++|.... ++ ...++.++ .+|.....+....+....|+|
T Consensus 370 ~~~p~~SPDG~~-I~f~~~~-~~--------~~~L~~~~---l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 370 NQFPRFSSDGGS-IMFIKYL-GN--------QSALGIIR---LNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred cCCeEECCCCCE-EEEEEcc-CC--------cEEEEEEe---cCCCeeEEeecCCCccCCCCC
Confidence 124899999994 5555322 11 12344444 344333444433444555555
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-16 Score=163.80 Aligned_cols=226 Identities=19% Similarity=0.175 Sum_probs=150.9
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..|||-+.. ++..++|+.. ...+..|+|||||++|||++.. ++..+||++|+.+|+.++++.....
T Consensus 184 ~~i~i~d~d----g~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~- 249 (429)
T PRK01742 184 YEVRVADYD----GFNQFIVNRS--SQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH- 249 (429)
T ss_pred EEEEEECCC----CCCceEeccC--CCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc-
Confidence 578888875 6667777742 3358999999999999998763 3467899999999988888654431
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+||++.|+++... + ...+||.+++
T Consensus 250 ----~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~ 279 (429)
T PRK01742 250 ----NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGA 279 (429)
T ss_pred ----cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEEC
Confidence 3578999998866654210 0 1246888998
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+++.++|+... ....+.|||||++|+|++.... ..+||.++..++..+.+.. .
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~---------------~ 334 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG---------------R 334 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC---------------C
Confidence 56788887643 4468999999999999875321 2378999988876665532 1
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
+ ..+.|||||+. +++... +.++.++. .+| +.+.++.. .....+.|+|||+.|++... +..
T Consensus 335 ~-~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl--~~g-~~~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~ 394 (429)
T PRK01742 335 G-YSAQISADGKT-LVMING-------------DNVVKQDL--TSG-STEVLSST-FLDESPSISPNGIMIIYSST-QGL 394 (429)
T ss_pred C-CCccCCCCCCE-EEEEcC-------------CCEEEEEC--CCC-CeEEecCC-CCCCCceECCCCCEEEEEEc-CCC
Confidence 1 24789999994 444321 23444443 233 34444322 23457899999998887754 233
Q ss_pred ceEEEEEcCCCCCCCceEe
Q 007338 323 QTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l 341 (607)
...++++++++ ...+.|
T Consensus 395 ~~~l~~~~~~G--~~~~~l 411 (429)
T PRK01742 395 GKVLQLVSADG--RFKARL 411 (429)
T ss_pred ceEEEEEECCC--CceEEc
Confidence 34566777776 334555
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=160.72 Aligned_cols=308 Identities=16% Similarity=0.170 Sum_probs=184.1
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
+..++||.++. +++.++|+.. ......+.|||||++|||+.. ++||+.++.+++.++||....
T Consensus 21 ~~~~y~i~d~~----~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg~ 83 (353)
T PF00930_consen 21 FKGDYYIYDIE----TGEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDGE 83 (353)
T ss_dssp EEEEEEEEETT----TTEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--T
T ss_pred cceeEEEEecC----CCceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEeccccc
Confidence 56789999997 8888888732 346999999999999999973 699999999999999997652
Q ss_pred ccc-cc------------cccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc--cccCccc
Q 007338 83 ICL-NA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN--LLKDEYD 147 (607)
Q Consensus 83 ~~~-~~------------~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~ 147 (607)
..+ +. ....+.||||++.|++..-+++.... -.......... .|.. .++++..
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~-----~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDS-----QYPEVESIRYPKA 151 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTE-----SS-EEEEEE--BT
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccc-----cCCcccccccCCC
Confidence 211 11 12367899997765555333332210 00000000000 0100 0122221
Q ss_pred ccceeeeccceEEEEeC-CCCeeecCCC-------CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 148 ESLFDYYTTAQLVLGSL-DGTAKDFGTP-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 148 ~~~~~~~~~~~l~~~~~-~g~~~~lt~~-------~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
+ ... ....|+++++ +++...+..+ .++..+.|++|+++|++....+... ...+.++|+.++
T Consensus 152 G--~~n-p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg 220 (353)
T PF00930_consen 152 G--DPN-PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTG 220 (353)
T ss_dssp T--S----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECTT
T ss_pred C--CcC-CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCCC
Confidence 1 111 3568999999 5655444322 2456899999999888887665432 236788888877
Q ss_pred eeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc
Q 007338 220 LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL 299 (607)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ 299 (607)
..+.+... . ...|- .
T Consensus 221 ~~~~~~~e----~-------------~~~Wv------------------------------------------------~ 235 (353)
T PF00930_consen 221 ETRVVLEE----T-------------SDGWV------------------------------------------------D 235 (353)
T ss_dssp TCEEEEEE----E-------------SSSSS------------------------------------------------S
T ss_pred ceeEEEEe----c-------------CCcce------------------------------------------------e
Confidence 66554320 0 00000 0
Q ss_pred ccceeeEc-CCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcC
Q 007338 300 RFRSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQ 378 (607)
Q Consensus 300 ~~~~~~ws-~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~ 378 (607)
....+.|. +++..++.... +.+..|||+++.++ +.++.|+.+.+.- .. .+.|+++++.|+|.+..+....
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V-~~-----i~~~d~~~~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEV-TS-----ILGWDEDNNRIYFTANGDNPGE 306 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-E-EE-----EEEEECTSSEEEEEESSGGTTS
T ss_pred eecccccccCCCCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceee-cc-----cceEcCCCCEEEEEecCCCCCc
Confidence 11234443 77776665544 55788999999998 4567787554331 00 2778899999999886533223
Q ss_pred cEEEEeecCCCCCCCcceeEeeecC-CCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc
Q 007338 379 IYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (607)
Q Consensus 379 ~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (607)
.+ |++++++ +++.++|+..... . . ..+|||++++++.++++++.|+
T Consensus 307 r~----------------lY~v~~~~~~~~~~LT~~~~~----~-~-------~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 307 RH----------------LYRVSLDSGGEPKCLTCEDGD----H-Y-------SASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp BE----------------EEEEETTETTEEEESSTTSST----T-E-------EEEE-TTSSEEEEEEESSSSCE
T ss_pred eE----------------EEEEEeCCCCCeEeccCCCCC----c-e-------EEEECCCCCEEEEEEcCCCCCC
Confidence 34 4477887 7888888765432 1 1 2468999999999999999986
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=159.22 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=151.3
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
.+|||++.. .+..+||++|.++...++++..... +..+.||||++.++++...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~--------------- 216 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFE--------------- 216 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEcc---------------
Confidence 579998743 3468999999988888888755442 5689999998766664210
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
. ...+||++++ +|+.++++.. .....+.|||||++|+|+.....
T Consensus 217 --------~-----------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 217 --------S-----------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------C-----------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 0 1357999999 6777777643 34457899999999999865321
Q ss_pred ccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEe
Q 007338 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (607)
..+||++|++++..++|+... .....+.|||||+. ++|.... .+ ...++.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~-------------~~~~~~~wSpDG~~-l~f~s~~-~g--------~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSS-------------GIDTEPFFSPDGRS-IYFTSDR-GG--------APQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCC-------------CCCcCeEEcCCCCE-EEEEecC-CC--------CcEEEE
Confidence 247999999988888876411 11235899999995 4554321 11 134666
Q ss_pred ccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeee
Q 007338 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (607)
Q Consensus 281 ~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (607)
++. .+++.+.++........+.|||||+.|++.... .+..+|+++|+.+ ++.+.++..... ..+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~--g~~~~lt~~~~~--------~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLAT--GQVTALTDTTRD--------ESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCC--CCeEEccCCCCc--------cCceE
Confidence 553 222445554333334568999999988876532 2345899999988 345666532111 12899
Q ss_pred CCCCCEEEEEeee
Q 007338 361 TSTGTNVIAKIKK 373 (607)
Q Consensus 361 ~~dg~~~~~~~~~ 373 (607)
+|||+.|+|....
T Consensus 379 spdg~~l~~~~~~ 391 (427)
T PRK02889 379 APNGRYILYATQQ 391 (427)
T ss_pred CCCCCEEEEEEec
Confidence 9999999998764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=159.67 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=153.5
Q ss_pred CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCC
Q 007338 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (607)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~ 121 (607)
+.+|||++..... .....+||++|.+++..++||..... +..+.|+||++.+++....
T Consensus 167 ~~~ia~v~~~~~~---~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~-------------- 224 (433)
T PRK04922 167 WTRIAYVTVSGAG---GAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFE-------------- 224 (433)
T ss_pred cceEEEEEEeCCC---CCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecC--------------
Confidence 5678998764211 13357899999998888999865432 5689999998766654210
Q ss_pred CeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCc
Q 007338 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
+ ...+||++++ +|+.++++.. .....+.|||||++|+|+.....
T Consensus 225 --------~------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 225 --------R------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred --------C------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 0 1357899999 5677777643 33347899999999999864321
Q ss_pred cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEE
Q 007338 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (607)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (607)
..+||++|+++++.++++... .....++|||||+. ++|.....+ ...+|
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~-------------~~~~~~~~spDG~~-l~f~sd~~g---------~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHF-------------GIDTEPTWAPDGKS-IYFTSDRGG---------RPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCC-------------CCccceEECCCCCE-EEEEECCCC---------CceEE
Confidence 237999999999888876421 01235899999984 445432111 13567
Q ss_pred eccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCee
Q 007338 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (607)
Q Consensus 280 ~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (607)
.++. ..| +.+.++........+.|||||+.|++... ..+..+|+++|+++ +..+.|+...... .+.
T Consensus 320 ~~dl--~~g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~--g~~~~Lt~~~~~~--------~p~ 385 (433)
T PRK04922 320 RVAA--SGG-SAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLST--GSVRTLTPGSLDE--------SPS 385 (433)
T ss_pred EEEC--CCC-CeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCC--CCeEECCCCCCCC--------Cce
Confidence 6663 222 55556543334457999999998877643 23446899999988 4556665332111 278
Q ss_pred eCCCCCEEEEEeee
Q 007338 360 RTSTGTNVIAKIKK 373 (607)
Q Consensus 360 ~~~dg~~~~~~~~~ 373 (607)
|+|||+.++|....
T Consensus 386 ~spdG~~i~~~s~~ 399 (433)
T PRK04922 386 FAPNGSMVLYATRE 399 (433)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-15 Score=156.60 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=154.3
Q ss_pred CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCC
Q 007338 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (607)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~ 120 (607)
-..+|||++..... ..+..+||++|.+++..++++..... +..+.||||++.|+++...
T Consensus 161 f~~~ia~v~~~~~~---~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~------------- 219 (430)
T PRK00178 161 FSTRILYVTAERFS---VNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFE------------- 219 (430)
T ss_pred ceeeEEEEEeeCCC---CCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcC-------------
Confidence 45679998754211 13456899999999888888755432 5689999998766554210
Q ss_pred CCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCC
Q 007338 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPY 198 (607)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~ 198 (607)
. ...+||++++ +|+.++|+... ....+.|||||++|+|......
T Consensus 220 ---------------------------~------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 220 ---------------------------Q------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ---------------------------C------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 0 1358999999 67888887543 3447899999999999865321
Q ss_pred ccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceE
Q 007338 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (607)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (607)
..+||++|+++++.++|+... .....+.|||||+. ++|....+ + ...+
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~-------------~~~~~~~~spDg~~-i~f~s~~~-g--------~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHP-------------AIDTEPFWGKDGRT-LYFTSDRG-G--------KPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCC-------------CCcCCeEECCCCCE-EEEEECCC-C--------CceE
Confidence 237999999999888886521 11235899999985 45543211 1 1356
Q ss_pred EeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCe
Q 007338 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (607)
Q Consensus 279 ~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (607)
+.++. ..| +.+.++........+.|||||+.+++.... .+..+|+++|+++ +..+.|+...... .+
T Consensus 314 y~~d~--~~g-~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t--g~~~~lt~~~~~~--------~p 379 (430)
T PRK00178 314 YKVNV--NGG-RAERVTFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR--GSVRILTDTSLDE--------SP 379 (430)
T ss_pred EEEEC--CCC-CEEEeecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCC--CCEEEccCCCCCC--------Cc
Confidence 66653 233 555555333344578999999988776532 2346899999998 4556665421111 17
Q ss_pred eeCCCCCEEEEEeee
Q 007338 359 TRTSTGTNVIAKIKK 373 (607)
Q Consensus 359 ~~~~dg~~~~~~~~~ 373 (607)
.|+|||+.++|....
T Consensus 380 ~~spdg~~i~~~~~~ 394 (430)
T PRK00178 380 SVAPNGTMLIYATRQ 394 (430)
T ss_pred eECCCCCEEEEEEec
Confidence 899999999988764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=160.05 Aligned_cols=203 Identities=14% Similarity=0.198 Sum_probs=141.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.++. +|+.++++.++. ....|.|||||++|+|+... ++..+||++|+++++.+++|....
T Consensus 242 ~~L~~~dl~----tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~-------~g~~~Iy~~dl~tg~~~~lt~~~~-- 306 (448)
T PRK04792 242 AEIFVQDIY----TQVREKVTSFPG--INGAPRFSPDGKKLALVLSK-------DGQPEIYVVDIATKALTRITRHRA-- 306 (448)
T ss_pred cEEEEEECC----CCCeEEecCCCC--CcCCeeECCCCCEEEEEEeC-------CCCeEEEEEECCCCCeEECccCCC--
Confidence 469999987 788888886543 35689999999999998764 456899999999999999986432
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
....+.|+||++.++++... + ...+||++++
T Consensus 307 ---~~~~p~wSpDG~~I~f~s~~---------------------------------------~-------g~~~Iy~~dl 337 (448)
T PRK04792 307 ---IDTEPSWHPDGKSLIFTSER---------------------------------------G-------GKPQIYRVNL 337 (448)
T ss_pred ---CccceEECCCCCEEEEEECC---------------------------------------C-------CCceEEEEEC
Confidence 14578999998866664210 0 1258999999
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+|+.++|+... .....+|||||++|+|+....+ ..+|+++|+++++.+.|+...
T Consensus 338 ~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g----------~~~I~~~dl~~g~~~~lt~~~-------------- 393 (448)
T PRK04792 338 ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG----------KFNIARQDLETGAMQVLTSTR-------------- 393 (448)
T ss_pred CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC----------ceEEEEEECCCCCeEEccCCC--------------
Confidence 57888886433 3346799999999999865321 137899999999888776411
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcC
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD 308 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~ 308 (607)
....++|||||+. |+|....+ + +..+++++ .+|...+.+.........|+|||
T Consensus 394 ~d~~ps~spdG~~-I~~~~~~~-g--------~~~l~~~~---~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 394 LDESPSVAPNGTM-VIYSTTYQ-G--------KQVLAAVS---IDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCceECCCCCE-EEEEEecC-C--------ceEEEEEE---CCCCceEECcCCCCCcCCCccCC
Confidence 1135799999984 44543321 1 23455554 34534455544445667899987
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-13 Score=133.97 Aligned_cols=374 Identities=15% Similarity=0.182 Sum_probs=201.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEe-ecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~-~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.|||.++|+ .|++++||. .-.-+.+|++||||++|||++ .... +....+||+++.++|+++++|....
T Consensus 59 DdlWe~slk----~g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~~~s----s~~taDly~v~~e~Ge~kRiTyfGr- 127 (668)
T COG4946 59 DDLWEYSLK----DGKPLRITS--GLGVVNNPKFSPDGRKVAFSRVMLGS----SLQTADLYVVPSEDGEAKRITYFGR- 127 (668)
T ss_pred hHHHHhhhc----cCCeeEEec--ccceeccccCCCCCcEEEEEEEEecC----CCccccEEEEeCCCCcEEEEEEecc-
Confidence 589999998 899999994 333689999999999999954 3321 2456899999999999999998743
Q ss_pred ccccccc-ceEEecCCeEEEEEecCC----CCCC-------CCCccCCCCCeeeecC-Cccccccc--------------
Q 007338 84 CLNAVFG-SFVWVNNSTLLIFTIPSS----RRDP-------PKKTMVPLGPKIQSNE-QKNIIISR-------------- 136 (607)
Q Consensus 84 ~~~~~~~-~~~Wspd~~~l~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~-~g~~~~~~-------------- 136 (607)
. +. -..|+||+++++.+.-.. ...+ -+...++-|+....-. +|.....|
T Consensus 128 ~----fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGG 203 (668)
T COG4946 128 R----FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred c----cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCC
Confidence 2 33 457999999988762110 0000 0011233333221110 01100000
Q ss_pred -------------cccccccCccc--------cc-ce--eeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCceEEE
Q 007338 137 -------------MTDNLLKDEYD--------ES-LF--DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (607)
Q Consensus 137 -------------~~~~~~~~~~~--------~~-~~--~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~i~~ 191 (607)
++...+..+.. ++ .| +....++||.+|++| ..++-|....+..=..+.||++|+|
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE
Confidence 00000000000 00 00 011456788888877 4565554433322345779999999
Q ss_pred EEccCCCccccCCCcCCccEEEEeCCCCeeEEec-cCCCCCCC--Ccccc--------cccCCCCcceeecCCC------
Q 007338 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAEDI--PVCYN--------SVREGMRSISWRADKP------ 254 (607)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~--~~~~~--------~~~~~~~~~~wspdg~------ 254 (607)
... .+||++|.++..+..|. .+|+..+. +...+ +...|. -++.-.-|+
T Consensus 284 q~~--------------GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSRGkaFi~~~ 348 (668)
T COG4946 284 QNA--------------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSRGKAFIMRP 348 (668)
T ss_pred ecC--------------CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEecCcEEEECC
Confidence 853 37999999988888774 33443111 11000 000000 011111111
Q ss_pred -----------ceEEEEEeecCCCCc-cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 255 -----------STLYWVEAQDRGDAN-VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 255 -----------~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
+.+.|.......... +-....+.+-+.+ ..|.+.+.+...-+.+..+..++||+.++... .
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd---~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----d 421 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD---KDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----D 421 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEe---cCCceEEEeeCCccceEEEEEcCCCcEEEEEc----C
Confidence 112222222111100 1122334444444 23334455544445677888999999655442 2
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeec
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~ 402 (607)
+..||++|+++ ++++.+- .+-.....+ +.|+|+++.+++.-- .. .|. +-+..+|.
T Consensus 422 r~el~vididn--gnv~~id-kS~~~lItd-----f~~~~nsr~iAYafP-----~g-y~t-----------q~Iklydm 476 (668)
T COG4946 422 RFELWVIDIDN--GNVRLID-KSEYGLITD-----FDWHPNSRWIAYAFP-----EG-YYT-----------QSIKLYDM 476 (668)
T ss_pred ceEEEEEEecC--CCeeEec-ccccceeEE-----EEEcCCceeEEEecC-----cc-eee-----------eeEEEEec
Confidence 46899999999 5666653 221111112 899999998876532 11 110 12334677
Q ss_pred CCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc
Q 007338 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (607)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (607)
.+++.-.++...+. . . .++|.||+++++|.....-.|.
T Consensus 477 ~~~Kiy~vTT~ta~---D-f--------sPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 477 DGGKIYDVTTPTAY---D-F--------SPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred CCCeEEEecCCccc---c-c--------CcccCCCCcEEEEEeccccCCC
Confidence 67777666544321 1 1 2467888888888776655554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-14 Score=149.24 Aligned_cols=214 Identities=18% Similarity=0.193 Sum_probs=145.7
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.+.. ++..++|+.. ......|.|||||++|||.... .+..+||++|+++|+.++++.....
T Consensus 170 ~~l~~~d~~----g~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~~- 235 (417)
T TIGR02800 170 YELQVADYD----GANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPGM- 235 (417)
T ss_pred ceEEEEcCC----CCCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 468888865 6778888742 2257899999999999998764 3457899999999988777644331
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+||++.++++... . ...+||.+++
T Consensus 236 ----~~~~~~spDg~~l~~~~~~-----------------------~-----------------------~~~~i~~~d~ 265 (417)
T TIGR02800 236 ----NGAPAFSPDGSKLAVSLSK-----------------------D-----------------------GNPDIYVMDL 265 (417)
T ss_pred ----ccceEECCCCCEEEEEECC-----------------------C-----------------------CCccEEEEEC
Confidence 4568999998765553110 0 1247888888
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+++.++|+... ....+.|+|||++|+|.+.... ...||++++++++.+++..
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~---------------- 319 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTF---------------- 319 (417)
T ss_pred CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeec----------------
Confidence 56777776543 3346799999999999875321 1379999988776554421
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
.......+.|+|||+.+++.... .+
T Consensus 320 ------------------------------------------------------~~~~~~~~~~spdg~~i~~~~~~-~~ 344 (417)
T TIGR02800 320 ------------------------------------------------------RGGYNASPSWSPDGDLIAFVHRE-GG 344 (417)
T ss_pred ------------------------------------------------------CCCCccCeEECCCCCEEEEEEcc-CC
Confidence 00112347889998877765432 24
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
..+|+++|+++ +..+.+...... ..+.|+|||+.|++....
T Consensus 345 ~~~i~~~d~~~--~~~~~l~~~~~~--------~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 345 GFNIAVMDLDG--GGERVLTDTGLD--------ESPSFAPNGRMILYATTR 385 (417)
T ss_pred ceEEEEEeCCC--CCeEEccCCCCC--------CCceECCCCCEEEEEEeC
Confidence 56899999988 344555422111 127899999999888764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=145.91 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=118.3
Q ss_pred CCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCcee----eEe-----cCCCCC
Q 007338 404 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS----QIT-----NFPHPY 474 (607)
Q Consensus 404 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~----~Lt-----~~~~~~ 474 (607)
.|++.+|++.. +..- ..++.+=+.++..+++-..|+.+.++.+..++-- +.. ....
T Consensus 540 ~g~~~rlt~~g----~sh~---------~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~-- 604 (867)
T KOG2281|consen 540 PGEIARLTEPG----YSHS---------CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGA-- 604 (867)
T ss_pred CCceeeccCCC----cccc---------hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcC--
Confidence 68888886543 1111 1123333557777888999999988877544311 111 1111
Q ss_pred CcccCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc
Q 007338 475 PTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA 553 (607)
Q Consensus 475 ~~~~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~ 553 (607)
...... .+|.|+|++.-|.+++|.+|||.+|+++||| |+++++|+|| .=|... +.|...-+.-+++||+
T Consensus 605 ~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkY--ptvl~VYGGP------~VQlVn--nsfkgi~ylR~~~Las 674 (867)
T KOG2281|consen 605 PPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKY--PTVLNVYGGP------GVQLVN--NSFKGIQYLRFCRLAS 674 (867)
T ss_pred CCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCC--ceEEEEcCCC------ceEEee--ccccceehhhhhhhhh
Confidence 111123 6799999999999999999999999999998 9999999753 222221 2444333455789999
Q ss_pred cCeEEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHhc-cccccccccc
Q 007338 554 RRFAVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAE-LLLEDTLMEH 606 (607)
Q Consensus 554 ~GY~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 606 (607)
+||+|+.--++++.-+|.+ ...+.++-.+.|...|.+||++++ ++|-|||--|
T Consensus 675 lGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vh 732 (867)
T KOG2281|consen 675 LGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVH 732 (867)
T ss_pred cceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEe
Confidence 9999996111111113443 344555666889999999999998 9999998766
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=144.46 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=157.1
Q ss_pred CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCC
Q 007338 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (607)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~ 121 (607)
+++|||++.+... ....+||++|.++...+++|..... +..+.||||++.+++....
T Consensus 168 ~~ria~v~~~~~~----~~~~~i~i~d~dg~~~~~lt~~~~~-----v~~p~wSPDG~~la~~s~~-------------- 224 (429)
T PRK01742 168 RTRIAYVVQKNGG----SQPYEVRVADYDGFNQFIVNRSSQP-----LMSPAWSPDGSKLAYVSFE-------------- 224 (429)
T ss_pred CCEEEEEEEEcCC----CceEEEEEECCCCCCceEeccCCCc-----cccceEcCCCCEEEEEEec--------------
Confidence 6899998865211 2247999999998888888765432 5789999998766664210
Q ss_pred CeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCc
Q 007338 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
. ...+||++++ +|+.+.++.. .....++|||||++|++......
T Consensus 225 ---------~-----------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 225 ---------N-----------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------C-----------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 0 1357888888 5666666532 23347899999999999864321
Q ss_pred cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEE
Q 007338 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (607)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (607)
..+||++|+++++.++|+.
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~----------------------------------------------------- 289 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTS----------------------------------------------------- 289 (429)
T ss_pred --------cEEEEEEECCCCCeEeecc-----------------------------------------------------
Confidence 1368999988876655532
Q ss_pred eccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCee
Q 007338 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (607)
Q Consensus 280 ~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (607)
.......+.|||||+.|++.... .+..+||.+++.++ ..+.+. .. . + .+.
T Consensus 290 -----------------~~~~~~~~~wSpDG~~i~f~s~~-~g~~~I~~~~~~~~--~~~~l~-~~--~-~------~~~ 339 (429)
T PRK01742 290 -----------------GAGNNTEPSWSPDGQSILFTSDR-SGSPQVYRMSASGG--GASLVG-GR--G-Y------SAQ 339 (429)
T ss_pred -----------------CCCCcCCEEECCCCCEEEEEECC-CCCceEEEEECCCC--CeEEec-CC--C-C------Ccc
Confidence 11123457899998877765432 24468999998773 333331 11 1 1 167
Q ss_pred eCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCC
Q 007338 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (607)
Q Consensus 360 ~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (607)
|+|||+.|++.... + +..+|+.+|+.+.++... .. ..++|+||+.
T Consensus 340 ~SpDG~~ia~~~~~----~------------------i~~~Dl~~g~~~~lt~~~-----~~--------~~~~~sPdG~ 384 (429)
T PRK01742 340 ISADGKTLVMINGD----N------------------VVKQDLTSGSTEVLSSTF-----LD--------ESPSISPNGI 384 (429)
T ss_pred CCCCCCEEEEEcCC----C------------------EEEEECCCCCeEEecCCC-----CC--------CCceECCCCC
Confidence 99999998876421 1 224677777766553221 00 1246899999
Q ss_pred EEEEEeecccccceEEEEecCCCceeeEecC
Q 007338 440 KILTSKESKTEITQYHILSWPLKKSSQITNF 470 (607)
Q Consensus 440 ~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~ 470 (607)
.+++.... ..-..+++.+..+...++|+..
T Consensus 385 ~i~~~s~~-g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 385 MIIYSSTQ-GLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred EEEEEEcC-CCceEEEEEECCCCceEEccCC
Confidence 88877653 4445577777666666777643
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-11 Score=125.66 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=107.6
Q ss_pred cCCEEEEEeecccccceEEEEecCCCceeeEecCCCCC-CcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCE
Q 007338 437 NQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (607)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~-~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (607)
+..++.+.++|.+.|..+|-+|+.+++.+.|-...-+. .+...-..+.+..++.||.+|+--|++-.+++ ++.+-|+
T Consensus 373 ~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~--~~g~~p~ 450 (682)
T COG1770 373 DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK--LDGSAPL 450 (682)
T ss_pred CCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--CCCCCcE
Confidence 55789999999999999999999999988886553221 22222378999999999999999999888765 3456799
Q ss_pred EEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC--eEEEeCCCCceeccCCCCchhhHH---HH-----hhcH
Q 007338 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR--FAVLAGPSIPIIGEGLWSNWFQVQ---RL-----LLKK 585 (607)
Q Consensus 516 iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G--Y~Vl~~~~~~~~g~g~~~~~~~~~---~~-----~~~~ 585 (607)
++++|+. | + +.-.| .|+ ...--|+.+| ||+.. ++.|++.|+.|=+ .+ ..|-
T Consensus 451 lLygYGa-Y------G-~s~~p-~Fs----~~~lSLlDRGfiyAIAH------VRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 451 LLYGYGA-Y------G-ISMDP-SFS----IARLSLLDRGFVYAIAH------VRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred EEEEecc-c------c-ccCCc-Ccc----cceeeeecCceEEEEEE------eecccccChHHHHhhhhhhccccHHHH
Confidence 9999963 1 1 11111 332 1134788999 55555 5456667777754 22 4589
Q ss_pred HHHHHHHHHhccccccccc
Q 007338 586 LFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 586 ~~~v~~~~~~~~~~~~~~~ 604 (607)
+++++.||++|+.+.+++.
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~ 530 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIV 530 (682)
T ss_pred HHHHHHHHHcCcCCccceE
Confidence 9999999999999998874
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-12 Score=136.13 Aligned_cols=252 Identities=13% Similarity=0.140 Sum_probs=159.5
Q ss_pred cCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCC
Q 007338 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (607)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~ 119 (607)
+.+.+++|++.... .+..+||++|..+++.++++..... ...+.||||++.+++....
T Consensus 153 ~~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~------------ 210 (417)
T TIGR02800 153 AFSTRIAYVSKSGK-----SRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFE------------ 210 (417)
T ss_pred CcCCEEEEEEEeCC-----CCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcC------------
Confidence 45788999886521 4568899999998888888754331 4578999998876664210
Q ss_pred CCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCC
Q 007338 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRP 197 (607)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~ 197 (607)
+ ...+|+++++ +|+.+.++.. .....+.|||||+.|+|+.....
T Consensus 211 ----------~------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 211 ----------S------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred ----------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC
Confidence 0 1247888888 5666666543 23346899999999999864321
Q ss_pred CccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCce
Q 007338 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (607)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~ 277 (607)
..+||++++.++..++|+..
T Consensus 257 ----------~~~i~~~d~~~~~~~~l~~~-------------------------------------------------- 276 (417)
T TIGR02800 257 ----------NPDIYVMDLDGKQLTRLTNG-------------------------------------------------- 276 (417)
T ss_pred ----------CccEEEEECCCCCEEECCCC--------------------------------------------------
Confidence 23799999988765554320
Q ss_pred EEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCC
Q 007338 278 IYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (607)
Q Consensus 278 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (607)
......+.|+|||+.|++.... .+..+||++|+.++ +.+.+...... ...
T Consensus 277 --------------------~~~~~~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~--~~~~l~~~~~~-------~~~ 326 (417)
T TIGR02800 277 --------------------PGIDTEPSWSPDGKSIAFTSDR-GGSPQIYMMDADGG--EVRRLTFRGGY-------NAS 326 (417)
T ss_pred --------------------CCCCCCEEECCCCCEEEEEECC-CCCceEEEEECCCC--CEEEeecCCCC-------ccC
Confidence 0011246788888877665432 23458999999873 44555421100 012
Q ss_pred eeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCccccccc
Q 007338 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLN 437 (607)
Q Consensus 358 ~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d 437 (607)
+.|+|||+.+++.....+ ... +..+++.++..+.+.... .. ..+.|++|
T Consensus 327 ~~~spdg~~i~~~~~~~~--~~~----------------i~~~d~~~~~~~~l~~~~------~~-------~~p~~spd 375 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGG--GFN----------------IAVMDLDGGGERVLTDTG------LD-------ESPSFAPN 375 (417)
T ss_pred eEECCCCCEEEEEEccCC--ceE----------------EEEEeCCCCCeEEccCCC------CC-------CCceECCC
Confidence 789999999888765321 222 335677666655443211 00 02468999
Q ss_pred CCEEEEEeecccccceEEEEecCCCceeeEec
Q 007338 438 QLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (607)
Q Consensus 438 ~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~ 469 (607)
++.+++....... ..+++.+..+...+.|+.
T Consensus 376 g~~l~~~~~~~~~-~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 376 GRMILYATTRGGR-GVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CCEEEEEEeCCCc-EEEEEEECCCceeeECCC
Confidence 9999888776544 578888866555555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-13 Score=138.70 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=146.5
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
....||+.|.. +-..+.++ ........|.|||||+.|+|..-.. .++..+|++++++|+..++.....
T Consensus 171 ~~~~l~~~D~d----g~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g 238 (425)
T COG0823 171 LPYELALGDYD----GYNQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNG 238 (425)
T ss_pred CCceEEEEccC----CcceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCC
Confidence 34567777753 45555665 3333578899999999999997641 233799999999998877765332
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
....++|||||+.+++.... + ...+||++
T Consensus 239 -----~~~~P~fspDG~~l~f~~~r---------------------------------------d-------g~~~iy~~ 267 (425)
T COG0823 239 -----NNGAPAFSPDGSKLAFSSSR---------------------------------------D-------GSPDIYLM 267 (425)
T ss_pred -----ccCCccCCCCCCEEEEEECC---------------------------------------C-------CCccEEEE
Confidence 14689999998766654210 0 24689999
Q ss_pred eCCC-CeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SLDG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~~g-~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
|+.+ +..+|+... ......|||||++|+|++.... ...||+++++++..++++.
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~-------------- 323 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTF-------------- 323 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeec--------------
Confidence 9954 666787653 3358999999999999986532 2379999999987766543
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
.......+.|||||+.|++....
T Consensus 324 --------------------------------------------------------~~~~~~~p~~SpdG~~i~~~~~~- 346 (425)
T COG0823 324 --------------------------------------------------------SGGGNSNPVWSPDGDKIVFESSS- 346 (425)
T ss_pred --------------------------------------------------------cCCCCcCccCCCCCCEEEEEecc-
Confidence 01112257888888888887622
Q ss_pred ccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 321 ~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+...+.+.|+.+.. ..+.+....... .++|.++|+.+.+...
T Consensus 347 ~g~~~i~~~~~~~~~-~~~~lt~~~~~e--------~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 347 GGQWDIDKNDLASGG-KIRILTSTYLNE--------SPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCceeeEEeccCCCC-cEEEccccccCC--------CCCcCCCCceEEEecc
Confidence 333567778887742 245543221111 2789999998887764
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-11 Score=120.06 Aligned_cols=345 Identities=12% Similarity=0.121 Sum_probs=157.4
Q ss_pred ccCCCCCCCeeeeecCCCC---CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccccc
Q 007338 12 LLPDDSLGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAV 88 (607)
Q Consensus 12 ~~~~~~~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~ 88 (607)
..|+..+-+.++||..+.. .+..++.|++||++|+|.+.+ ++..+||++|+++++++|||+.+...
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~---- 82 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN---- 82 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----
Confidence 3445556677788753331 257889999999999998876 67899999999999999999765321
Q ss_pred ccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC
Q 007338 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT 167 (607)
Q Consensus 89 ~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~ 167 (607)
.....++++++.+|+.. ...+|+.+++ +.+
T Consensus 83 ~~g~~~s~~~~~~~Yv~-------------------------------------------------~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVK-------------------------------------------------NGRSLRRVDLDTLE 113 (386)
T ss_dssp TTT-EE-TTSSEEEEEE-------------------------------------------------TTTEEEEEETTT--
T ss_pred ccceEEecCCCeEEEEE-------------------------------------------------CCCeEEEEECCcCc
Confidence 22567788866554421 0136677787 555
Q ss_pred eeecC-CCC-cee--eeeeCCCCceEEEEEccCCCccccC---------CCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 168 AKDFG-TPA-VYT--AVEPSPDQKYVLITSMHRPYSYKVP---------CARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 168 ~~~lt-~~~-~~~--~~~~SpDg~~i~~~~~~~~~~~~~~---------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
.+.|. .+. ... ......|++.++.....+......+ ..+-...|+.+|+++|+.+.|.+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~------ 187 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT------ 187 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES------
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC------
Confidence 55542 222 222 3333557777766654322110000 0012458999999999999875410
Q ss_pred cccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec--CcccceeeEcCCCcE
Q 007338 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLA 312 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~--~~~~~~~~ws~Dg~~ 312 (607)
.-.-.+.+||.-...|.|-- +|.+. .+ ...+++++. +|...+.+... ....+.--|+|||..
T Consensus 188 -------~wlgH~~fsP~dp~li~fCH---EGpw~-~V--d~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 188 -------DWLGHVQFSPTDPTLIMFCH---EGPWD-LV--DQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp -------S-EEEEEEETTEEEEEEEEE----S-TT-TS--S-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-
T ss_pred -------ccccCcccCCCCCCEEEEec---cCCcc-ee--ceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCE
Confidence 00113778886665444421 22211 11 125666663 44334444332 223556779999998
Q ss_pred EEEEEeccc-cceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCC
Q 007338 313 LVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 391 (607)
Q Consensus 313 l~~~~~~~~-~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~ 391 (607)
|.+...... ...-|+.+|+.+. +.+.+....... . +.-++||+.++--..+ ....+ ...+...-
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~--~~~~~~~~p~~~---H-----~~ss~Dg~L~vGDG~d---~p~~v--~~~~~~~~ 316 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTG--ERRRLMEMPWCS---H-----FMSSPDGKLFVGDGGD---APVDV--ADAGGYKI 316 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT----EEEEEEE-SEE---E-----EEE-TTSSEEEEEE--------------------
T ss_pred EEEEeecCCCCceEEEeeCCCCC--CceEEEeCCcee---e-----eEEcCCCCEEEecCCC---CCccc--ccccccee
Confidence 888765332 3446788999884 444443221111 0 4457888864322111 01111 01111122
Q ss_pred CCcceeEeeecCCCCeeEEeecCCcccceeeeeeec--C---CCcccccccCCEEEEEeecccccceEEEEecC
Q 007338 392 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVF--G---QGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (607)
Q Consensus 392 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~--~---~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~ 460 (607)
.+.++|+.++++.++...|-.-.. -..+.. . ...++||||+++++|+..- ..++.||+++++
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~------sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDT------SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred cCCcEEEEeccccCceeeeeeccC------cceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 356678778887776555532110 000000 0 1246899999999886644 666779999865
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=135.09 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=120.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..+|++++. .|...++..+.. ....|+|||||++|||...+ ++..+||++|+.++...+||.....
T Consensus 218 ~~i~~~~l~----~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~r-------dg~~~iy~~dl~~~~~~~Lt~~~gi- 283 (425)
T COG0823 218 PRIYYLDLN----TGKRPVILNFNG--NNGAPAFSPDGSKLAFSSSR-------DGSPDIYLMDLDGKNLPRLTNGFGI- 283 (425)
T ss_pred ceEEEEecc----CCccceeeccCC--ccCCccCCCCCCEEEEEECC-------CCCccEEEEcCCCCcceecccCCcc-
Confidence 579999998 677777765443 58899999999999999987 6789999999999998888866542
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+|||+.++|+++. . ...+||++++
T Consensus 284 ----~~~Ps~spdG~~ivf~Sdr---------------------~-------------------------G~p~I~~~~~ 313 (425)
T COG0823 284 ----NTSPSWSPDGSKIVFTSDR---------------------G-------------------------GRPQIYLYDL 313 (425)
T ss_pred ----ccCccCCCCCCEEEEEeCC---------------------C-------------------------CCcceEEECC
Confidence 3589999998877665311 0 2358999999
Q ss_pred CC-CeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe-eEEeccCCCCCCCCccccccc
Q 007338 165 DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 165 ~g-~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+| +++++|... ......|||||++|+|...... ...+...++.++. .+.++..
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g----------~~~i~~~~~~~~~~~~~lt~~-------------- 369 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG----------QWDIDKNDLASGGKIRILTST-------------- 369 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC----------ceeeEEeccCCCCcEEEcccc--------------
Confidence 65 778887643 3347899999999999973211 1257778887654 5555431
Q ss_pred CCCCcceeecCCCce
Q 007338 242 EGMRSISWRADKPST 256 (607)
Q Consensus 242 ~~~~~~~wspdg~~~ 256 (607)
.....++|+++|+.+
T Consensus 370 ~~~e~ps~~~ng~~i 384 (425)
T COG0823 370 YLNESPSWAPNGRMI 384 (425)
T ss_pred ccCCCCCcCCCCceE
Confidence 112358999999853
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-11 Score=125.34 Aligned_cols=292 Identities=20% Similarity=0.240 Sum_probs=157.3
Q ss_pred ccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccC
Q 007338 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (607)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~ 118 (607)
||||++++|..+.... --......+|++|+++++.++|+.... ....+.||||++.+++...
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999997654110 001445789999999999999975411 2578999999887666421
Q ss_pred CCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-------------------cee
Q 007338 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (607)
Q Consensus 119 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-------------------~~~ 178 (607)
.+||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 24444444 33444444321 124
Q ss_pred eeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-----eeEEeccCCCCCCCCcccccccCCCCcceeecCC
Q 007338 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (607)
.+.|||||++|+|...+.. .+ ..+.+.+.... +...+.
T Consensus 105 ~~~WSpd~~~la~~~~d~~---~v------~~~~~~~~~~~~~~yp~~~~~~---------------------------- 147 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDER---EV------PEYPLPDYSPPDSQYPEVESIR---------------------------- 147 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-T---TS-------EEEEEEESSSTESS-EEEEEE----------------------------
T ss_pred ceEECCCCCEEEEEEECCc---CC------ceEEeeccCCccccCCcccccc----------------------------
Confidence 6789999999999976532 11 13333332221 111110
Q ss_pred CceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee------eecCcccceeeEcCCCcEE-EEEEeccccceEE
Q 007338 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL------HKLDLRFRSVSWCDDSLAL-VNETWYKTSQTRT 326 (607)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l------~~~~~~~~~~~ws~Dg~~l-~~~~~~~~~~~~l 326 (607)
....|+. +..-.+++++. ..+ +...+ ...+..+..+.|++|+..| +...++......|
T Consensus 148 --------YPk~G~~----np~v~l~v~~~--~~~-~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 148 --------YPKAGDP----NPRVSLFVVDL--ASG-KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp ----------BTTS-------EEEEEEEES--SST-CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred --------cCCCCCc----CCceEEEEEEC--CCC-cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 0001110 01122333332 122 22111 1223456789999999844 4444555677788
Q ss_pred EEEcCCCCCCCceEeeeccccccccCCCCCCeeeC-CCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCC
Q 007338 327 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRT-STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (607)
Q Consensus 327 ~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (607)
.++|+++ +..+.+.......-+.... .+.+. +++..+++....+| -.+|| .++.+++
T Consensus 213 ~~~d~~t--g~~~~~~~e~~~~Wv~~~~--~~~~~~~~~~~~l~~s~~~G--~~hly----------------~~~~~~~ 270 (353)
T PF00930_consen 213 VLCDAST--GETRVVLEETSDGWVDVYD--PPHFLGPDGNEFLWISERDG--YRHLY----------------LYDLDGG 270 (353)
T ss_dssp EEEEECT--TTCEEEEEEESSSSSSSSS--EEEE-TTTSSEEEEEEETTS--SEEEE----------------EEETTSS
T ss_pred EEEECCC--CceeEEEEecCCcceeeec--ccccccCCCCEEEEEEEcCC--CcEEE----------------EEccccc
Confidence 9999987 3445553211111010001 13443 77777777776433 33444 5677677
Q ss_pred CeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeeccc-ccceEEEEecC-CCceeeEecCC
Q 007338 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWP-LKKSSQITNFP 471 (607)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~-~p~~l~~~~~~-~~~~~~Lt~~~ 471 (607)
..+.|+..... +..+ ..++.+++.++|++...+ .-..||+++++ +++.++||...
T Consensus 271 ~~~~lT~G~~~-----V~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 271 KPRQLTSGDWE-----VTSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp EEEESS-SSS------EEEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred ceeccccCcee-----eccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 76777655421 1111 235677788988886522 23458889998 88899999763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-09 Score=119.22 Aligned_cols=237 Identities=17% Similarity=0.103 Sum_probs=131.2
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeec
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~ 402 (607)
..++..+....+ ..++.++.+.+.- .. .+.|+.+++.++|.....+.....+| ++++
T Consensus 365 ~~hi~~~~~~~~-~~~~~lt~g~w~v-~~-----i~~~~~~~~~i~f~~~~~~~~~~~ly----------------~i~~ 421 (755)
T KOG2100|consen 365 YNHIAYLKLSNG-SEPRMLTSGNWEV-TS-----ILGYDKDSNRIYFDAYEEDPSERHLY----------------SISL 421 (755)
T ss_pred EEEEEEEEcCCC-CccccccccceEE-EE-----eccccCCCceEEEEecCCCCCceEEE----------------EEEc
Confidence 567777766663 2445454333321 11 14456777888887654322233444 4455
Q ss_pred CCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc-eEEEEecCCC-ceeeEecCCCCCCc---c
Q 007338 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT-QYHILSWPLK-KSSQITNFPHPYPT---L 477 (607)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~-~l~~~~~~~~-~~~~Lt~~~~~~~~---~ 477 (607)
.+.....++-.... ....... .+++.....++...+-+.-|- .+=+.+.... ....|..+. ...+ .
T Consensus 422 ~~~~~~~lt~~~~~-~~~~~~~-------~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~-~~~~~~~~ 492 (755)
T KOG2100|consen 422 GSGTVESLTCSLIT-GPCTYLS-------VSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNE-ELKKTIEN 492 (755)
T ss_pred cccccccccccCCC-CcceEEE-------EecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccCh-hhHHHhhc
Confidence 44444444322211 0001111 233444456666555555552 1222221111 233443331 1111 1
Q ss_pred cCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCe
Q 007338 478 ASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (607)
Q Consensus 478 ~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY 556 (607)
..+ ..+..+.+- ||...+.++++|++|+++||| |+||++|+||. +++++. .|. ..++.+++.+.|+
T Consensus 493 ~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~ky--Pllv~~yGGP~-----sq~v~~---~~~--~~~~~~~~s~~g~ 559 (755)
T KOG2100|consen 493 VALPIVEFGKIEI-DGITANAILILPPNFDPSKKY--PLLVVVYGGPG-----SQSVTS---KFS--VDWNEVVVSSRGF 559 (755)
T ss_pred ccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCCC--CEEEEecCCCC-----cceeee---eEE--ecHHHHhhccCCe
Confidence 112 344444444 999999999999999999987 99999996532 222221 111 1234568999999
Q ss_pred EEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 557 AVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 557 ~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+|+.-..+++.|+|.. ...+++...++|++.+|+++++.+++|++++-
T Consensus 560 ~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~ 611 (755)
T KOG2100|consen 560 AVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVA 611 (755)
T ss_pred EEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeE
Confidence 9998333333334443 45667777899999999999999999999863
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=108.37 Aligned_cols=293 Identities=16% Similarity=0.152 Sum_probs=140.8
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||+.||. +++.+|||..+.. ......+||+++.|+|..+ ..+|+.+|+++.+.+.|...++.-
T Consensus 60 ~nly~lDL~----t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 60 RNLYLLDLA----TGEITQLTDGPGD-NTFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp -EEEEEETT----T-EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TTE
T ss_pred cceEEEEcc----cCEEEECccCCCC-CccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCccc
Confidence 589999998 9999999965532 3447899999999999764 358999999999998887766531
Q ss_pred ccccccceEEe--cCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 85 LNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 85 ~~~~~~~~~Ws--pd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+.-.|+ .|++.++........ .+ +...+.. . ...+......+|+.+
T Consensus 125 ----~g~gt~v~n~d~t~~~g~e~~~~d-------------------~~--~l~~~~~-----f-~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 125 ----KGYGTWVANSDCTKLVGIEISRED-------------------WK--PLTKWKG-----F-REFYEARPHCRIFTI 173 (386)
T ss_dssp ----EEEEEEEE-TTSSEEEEEEEEGGG--------------------------SHHH-----H-HHHHHC---EEEEEE
T ss_pred ----ccccceeeCCCccEEEEEEEeehh-------------------cc--CccccHH-----H-HHHHhhCCCceEEEE
Confidence 3346786 346666553110000 00 0000000 0 001111235799999
Q ss_pred eC-CCCeeecCCC-CceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccc
Q 007338 163 SL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (607)
Q Consensus 163 ~~-~g~~~~lt~~-~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (607)
++ +|+.+.|... ....-+.+|| |...|.|... .|+. ....+||.++.+++..+++......|
T Consensus 174 dl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE-Gpw~------~Vd~RiW~i~~dg~~~~~v~~~~~~e-------- 238 (386)
T PF14583_consen 174 DLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE-GPWD------LVDQRIWTINTDGSNVKKVHRRMEGE-------- 238 (386)
T ss_dssp ETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE--S-TT------TSS-SEEEEETTS---EESS---TTE--------
T ss_pred ECCCCceeEEEecCccccCcccCCCCCCEEEEecc-CCcc------eeceEEEEEEcCCCcceeeecCCCCc--------
Confidence 99 7888776543 3445677888 4677777643 2322 12348999999999998886421110
Q ss_pred ccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEec
Q 007338 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (607)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~ 319 (607)
.+..--|+|||+.+ .|+....++... -+.-.+ +.++ +.+.+...+ ....+.-++||+.++.+...
T Consensus 239 ---~~gHEfw~~DG~~i-~y~~~~~~~~~~-------~i~~~d--~~t~-~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 239 ---SVGHEFWVPDGSTI-WYDSYTPGGQDF-------WIAGYD--PDTG-ERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp ---EEEEEEE-TTSS-E-EEEEEETTT--E-------EEEEE---TTT---EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred ---ccccccccCCCCEE-EEEeecCCCCce-------EEEeeC--CCCC-CceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 01126799999964 444433332110 111122 2333 223332222 23345557899888876421
Q ss_pred c------------ccceEEEEEcCCCCCCCceEeeeccccccc----cCCCCCCeeeCCCCCEEEEEeeecc
Q 007338 320 K------------TSQTRTWLVCPGSKDVAPRVLFDRVFENVY----SDPGSPMMTRTSTGTNVIAKIKKEN 375 (607)
Q Consensus 320 ~------------~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~~~ 375 (607)
. ....-||++++.. +....|........+ .....+-++++|||+.|+|.+...|
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~--~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEA--GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp -----------------EEEEEETTT--TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred CCccccccccceecCCcEEEEecccc--CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
Confidence 1 1123677788876 344445332211111 0112245899999999999987654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.5e-07 Score=89.27 Aligned_cols=245 Identities=15% Similarity=0.082 Sum_probs=130.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|++.++. +++..... ..........|+|||+.++.... ....|+++|+.+++..........
T Consensus 12 ~v~~~d~~----t~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~~---------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 12 TISVIDTA----TLEVTRTF--PVGQRPRGITLSKDGKLLYVCAS---------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred EEEEEECC----CCceEEEE--ECCCCCCceEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 46677765 55544433 22224677999999998655542 235799999998876543221111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
...+.|+|+++.++.+... ...|+++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~~~------------------------------------------------~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANED------------------------------------------------DNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcCC------------------------------------------------CCeEEEEECC
Confidence 3467899998876654110 123444555
Q ss_pred CCC-eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 ~g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+++ ...+........+.|+|||+.+++.... ...++.+|..+++...... ....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~------------~~~~~~~d~~~~~~~~~~~-------------~~~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET------------TNMAHFIDTKTYEIVDNVL-------------VDQR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecC------------CCeEEEEeCCCCeEEEEEE-------------cCCC
Confidence 222 2222212223568999999998877532 1135567877664432111 0112
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec-------CcccceeeEcCCCcEEEEE
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-------DLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~-------~~~~~~~~ws~Dg~~l~~~ 316 (607)
+..+.|+|||+. + ++... ....+.+++. ..+...+.+... ......+.|+|||+.++..
T Consensus 159 ~~~~~~s~dg~~-l-~~~~~----------~~~~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 159 PRFAEFTADGKE-L-WVSSE----------IGGTVSVIDV--ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred ccEEEECCCCCE-E-EEEcC----------CCCEEEEEEc--CcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 345889999983 2 22111 1123444443 222111222110 1112357899999864332
Q ss_pred EeccccceEEEEEcCCCCCCCceE-ee-eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 317 TWYKTSQTRTWLVCPGSKDVAPRV-LF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 317 ~~~~~~~~~l~~~dl~~~~~~~~~-l~-~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.. ...+++++|+.+. +... +. ...+.. +.|+|+|+.|+...
T Consensus 225 ~~---~~~~i~v~d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 225 LG---PANRVAVVDAKTY--EVLDYLLVGQRVWQ---------LAFTPDEKYLLTTN 267 (300)
T ss_pred cC---CCCeEEEEECCCC--cEEEEEEeCCCcce---------EEECCCCCEEEEEc
Confidence 11 1236888898763 3222 21 221222 78999999877654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-07 Score=87.68 Aligned_cols=297 Identities=11% Similarity=0.065 Sum_probs=165.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|||-.- ++..-+.+..++. .++.|.+- |.+|+|++.. ++..+||-.|+++...++-|...+--.
T Consensus 207 klWis~d----~g~tFeK~vdl~~--~vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtdYY~ 271 (668)
T COG4946 207 KLWISSD----GGKTFEKFVDLDG--NVSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTDYYP 271 (668)
T ss_pred eEEEEec----CCcceeeeeecCC--CcCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchhccc
Confidence 4777752 2335566665655 58888876 8899999976 788999999999988888876654210
Q ss_pred -cccc--cceEEecCCeEEEEEecCCCCCCCCCccCCCC-CeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 86 -NAVF--GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG-PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 86 -~~~~--~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
+... ..+.|+..|.++.+- + +...+.+ +.-+ +........+...+..|.... ...++.......+++.|+
T Consensus 272 R~~nsDGkrIvFq~~GdIylyd-P-~td~lek---ldI~lpl~rk~k~~k~~~pskyledf-a~~~Gd~ia~VSRGkaFi 345 (668)
T COG4946 272 RNANSDGKRIVFQNAGDIYLYD-P-ETDSLEK---LDIGLPLDRKKKQPKFVNPSKYLEDF-AVVNGDYIALVSRGKAFI 345 (668)
T ss_pred cccCCCCcEEEEecCCcEEEeC-C-CcCccee---eecCCccccccccccccCHHHhhhhh-ccCCCcEEEEEecCcEEE
Confidence 1100 022333333333221 1 1111000 0011 000000000000001111000 001222233345778888
Q ss_pred EeC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 162 GSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 162 ~~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++. .|-..++.....+.--.++-|++.+++...+ ...|.++|..+++++++...
T Consensus 346 ~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~d------------gD~l~iyd~~~~e~kr~e~~------------- 400 (668)
T COG4946 346 MRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTND------------GDKLGIYDKDGGEVKRIEKD------------- 400 (668)
T ss_pred ECCCCCeeEEcCCCCceEEEEEccCCcceEEeccC------------CceEEEEecCCceEEEeeCC-------------
Confidence 888 6677788776655545666677766666543 12688999999998887541
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcCCCcEEEEEEec
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWY 319 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~Dg~~l~~~~~~ 319 (607)
-.....+.-|+|||..++ .+.+-++++++. .+| .++.+.+.. .-+..+.|+|+++.|++.-..
T Consensus 401 lg~I~av~vs~dGK~~vv-------------aNdr~el~vidi--dng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVV-------------ANDRFELWVIDI--DNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred ccceEEEEEcCCCcEEEE-------------EcCceEEEEEEe--cCC-CeeEecccccceeEEEEEcCCceeEEEecCc
Confidence 012235888999985322 234556777775 333 455544433 346789999999987765321
Q ss_pred cccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 320 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 320 ~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.--..+|.++|+++. +...++-...-+ ..+.+.|||+++||.+..
T Consensus 465 gy~tq~Iklydm~~~--Kiy~vTT~ta~D-------fsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 465 GYYTQSIKLYDMDGG--KIYDVTTPTAYD-------FSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred ceeeeeEEEEecCCC--eEEEecCCcccc-------cCcccCCCCcEEEEEecc
Confidence 112347778888883 333333111111 127889999999998754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=92.78 Aligned_cols=129 Identities=23% Similarity=0.260 Sum_probs=77.2
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
...++||||++|||....+. .....|+++|+++|+...-. ... . ....+.|++|++.+|++.......
T Consensus 127 ~~~~~Spdg~~la~~~s~~G-----~e~~~l~v~Dl~tg~~l~d~-i~~-~---~~~~~~W~~d~~~~~y~~~~~~~~-- 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGG-----SEWYTLRVFDLETGKFLPDG-IEN-P---KFSSVSWSDDGKGFFYTRFDEDQR-- 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETT-----SSEEEEEEEETTTTEEEEEE-EEE-E---ESEEEEECTTSSEEEEEECSTTTS--
T ss_pred eeeeECCCCCEEEEEecCCC-----CceEEEEEEECCCCcCcCCc-ccc-c---ccceEEEeCCCCEEEEEEeCcccc--
Confidence 36789999999999987521 44588999999999653210 011 1 122499999988777653221100
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe--eecC---CCCc-eeeeeeCCCC
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFG---TPAV-YTAVEPSPDQ 186 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~lt---~~~~-~~~~~~SpDg 186 (607)
+ - .. ....+||...+ ++.. ..|- .+.. ...+..|+|+
T Consensus 195 ----------------~-------~---------~~----~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 195 ----------------T-------S---------DS----GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp ----------------S-----------------CC----GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred ----------------c-------c---------cC----CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc
Confidence 0 0 00 01346777777 4422 2332 2233 5578999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
++|++....... .+++|++++..+
T Consensus 239 ~~l~i~~~~~~~---------~s~v~~~d~~~~ 262 (414)
T PF02897_consen 239 RYLFISSSSGTS---------ESEVYLLDLDDG 262 (414)
T ss_dssp SEEEEEEESSSS---------EEEEEEEECCCT
T ss_pred cEEEEEEEcccc---------CCeEEEEecccc
Confidence 999988754211 147899998764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=104.66 Aligned_cols=146 Identities=19% Similarity=0.108 Sum_probs=108.7
Q ss_pred ccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCE
Q 007338 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (607)
Q Consensus 436 ~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (607)
.++..+++..+++..|+.+|+.++.+++++.|-... ...+..+...|.+..+|.||++|+.+++. ++.+.+ +.|+
T Consensus 349 ~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p-~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~pT 423 (648)
T COG1505 349 KDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQP-VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENPT 423 (648)
T ss_pred CCCcEEEEEeecccCCCceEEEecCCceehhhhhcc-CCcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCce
Confidence 366788899999999999999999888888887663 33445556899999999999999999998 776643 4599
Q ss_pred EEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchhhHH--------HHhhcHHH
Q 007338 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQ--------RLLLKKLF 587 (607)
Q Consensus 516 iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~--------~~~~~~~~ 587 (607)
+||.|+|+ + +.-.| .|. ....+|..+|.+-++ . +++| |++++-.|-+ ...+|-++
T Consensus 424 ll~aYGGF-~-------vsltP-~fs----~~~~~WLerGg~~v~-A--NIRG-GGEfGp~WH~Aa~k~nrq~vfdDf~A 486 (648)
T COG1505 424 LLYAYGGF-N-------ISLTP-RFS----GSRKLWLERGGVFVL-A--NIRG-GGEFGPEWHQAGMKENKQNVFDDFIA 486 (648)
T ss_pred EEEecccc-c-------cccCC-ccc----hhhHHHHhcCCeEEE-E--eccc-CCccCHHHHHHHhhhcchhhhHHHHH
Confidence 99999874 2 33334 232 123689999866555 2 2344 4445555544 45779999
Q ss_pred HHHHHHHhcccccccc
Q 007338 588 DVEWLIQAELLLEDTL 603 (607)
Q Consensus 588 ~v~~~~~~~~~~~~~~ 603 (607)
.+++||.+||.-++.|
T Consensus 487 VaedLi~rgitspe~l 502 (648)
T COG1505 487 VAEDLIKRGITSPEKL 502 (648)
T ss_pred HHHHHHHhCCCCHHHh
Confidence 9999999999766654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-07 Score=99.10 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=81.8
Q ss_pred CCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec
Q 007338 18 LGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
++...++.+... ...+++|++||||+.+||+......+ .++..+||+.+. +++.+++|.... ...+.|+|
T Consensus 336 ~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~--~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWsp 406 (591)
T PRK13616 336 GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGA--PDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSL 406 (591)
T ss_pred CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCC--CCcceEEEEEeC-CCcceeeecCCC------CCCceECC
Confidence 334445543322 12578999999999999998642211 145689999997 556688874432 57899999
Q ss_pred CCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC-CCeeecCCCC
Q 007338 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTPA 175 (607)
Q Consensus 97 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~lt~~~ 175 (607)
|++.+.+..+... .. ++.. . ....++|+++++ |++++ ....
T Consensus 407 DG~~lw~v~dg~~-------------~~-----------~v~~------~-------~~~gql~~~~vd~ge~~~-~~~g 448 (591)
T PRK13616 407 DADAVWVVVDGNT-------------VV-----------RVIR------D-------PATGQLARTPVDASAVAS-RVPG 448 (591)
T ss_pred CCCceEEEecCcc-------------eE-----------EEec------c-------CCCceEEEEeccCchhhh-ccCC
Confidence 9765555422100 00 0000 0 024688888884 46554 3233
Q ss_pred ceeeeeeCCCCceEEEEE
Q 007338 176 VYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~ 193 (607)
.+..+.|||||++|+|..
T Consensus 449 ~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 449 PISELQLSRDGVRAAMII 466 (591)
T ss_pred CcCeEEECCCCCEEEEEE
Confidence 577899999999999986
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.1e-06 Score=84.19 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=53.8
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||..++. .++|+...+.........+...++|+++.|+.+..... ..+.-..|.++.++|+...+......+
T Consensus 13 ~gI~~~~~d--~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 13 GGIYVFRFD--EETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp TEEEEEEEE--TTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CcEEEEEEc--CCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCC
Confidence 578888883 34666666654444546788899999988655543210 134455566666667776654322111
Q ss_pred ccccccceEEecCCeEEEEE
Q 007338 85 LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+..+|+++.+|.+
T Consensus 87 --~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 87 --SSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp --SCEEEEEECTTSSEEEEE
T ss_pred --CCcEEEEEecCCCEEEEE
Confidence 012345667888888875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-05 Score=80.21 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=49.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-CCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~~ 83 (607)
..|.+.++. .+|+.+.+..+..........+||||+.|+.... ....|.++++. .|+...+......
T Consensus 12 ~~I~~~~~~---~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLN---HEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCEEEEEEC---CCCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecCC
Confidence 356777774 2455554444443345778899999998755432 13556666665 4554333211111
Q ss_pred cccccccceEEecCCeEEEEE
Q 007338 84 CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+.++|+++.+|.+
T Consensus 80 ---~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 80 ---GSPTHISTDHQGRFLFSA 97 (330)
T ss_pred ---CCceEEEECCCCCEEEEE
Confidence 114577889999887765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-05 Score=75.70 Aligned_cols=270 Identities=11% Similarity=0.033 Sum_probs=136.1
Q ss_pred ceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc
Q 007338 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (607)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 140 (607)
...|+++|+++++..+....... ...+.|+||++.++.+...
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~~~--------------------------------- 51 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCASD--------------------------------- 51 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEECC---------------------------------
Confidence 35899999998886554432221 4568999998866553100
Q ss_pred cccCcccccceeeeccceEEEEeC-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
...|+++++ +++.. .+........+.|+|||+.++++... ...|++||+.+
T Consensus 52 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 52 ---------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred ---------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 123455555 44332 23322223467899999988766421 13688999987
Q ss_pred CeeE-EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec
Q 007338 219 KLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (607)
Q Consensus 219 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 297 (607)
++.. .+.. ...+..+.|+|||+. + .+...+ + ..++.++. ..+ +.......
T Consensus 105 ~~~~~~~~~--------------~~~~~~~~~~~dg~~-l-~~~~~~-~---------~~~~~~d~--~~~-~~~~~~~~ 155 (300)
T TIGR03866 105 RKVLAEIPV--------------GVEPEGMAVSPDGKI-V-VNTSET-T---------NMAHFIDT--KTY-EIVDNVLV 155 (300)
T ss_pred CeEEeEeeC--------------CCCcceEEECCCCCE-E-EEEecC-C---------CeEEEEeC--CCC-eEEEEEEc
Confidence 5432 2210 112345899999983 2 221111 1 12222232 111 11111112
Q ss_pred CcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCC-CCCCeeeCCCCCEEEEEeeeccC
Q 007338 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-GSPMMTRTSTGTNVIAKIKKEND 376 (607)
Q Consensus 298 ~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~ 376 (607)
......+.|++||..++..... ...++++|+.+.+ ..+.+. ......-... ....+.++++|+.+++....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--- 227 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--- 227 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCC---
Confidence 2234568899999876543211 1368888988732 122221 1100000000 00116688999876654321
Q ss_pred cCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEE
Q 007338 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (607)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~ 456 (607)
... +..+|+++++........ ..+. ..+|+|+++.++.... .-.++.+
T Consensus 228 -~~~----------------i~v~d~~~~~~~~~~~~~-----~~~~-------~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 228 -ANR----------------VAVVDAKTYEVLDYLLVG-----QRVW-------QLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred -CCe----------------EEEEECCCCcEEEEEEeC-----CCcc-------eEEECCCCCEEEEEcC---CCCeEEE
Confidence 111 223566666544321111 0111 1357889887754322 2236899
Q ss_pred EecCCCce
Q 007338 457 LSWPLKKS 464 (607)
Q Consensus 457 ~~~~~~~~ 464 (607)
+++.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99877764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-05 Score=73.63 Aligned_cols=304 Identities=14% Similarity=0.126 Sum_probs=151.9
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||.-+|.. ..|+...+.........+...|+|+++.|+.....++ .++-.-|.+|...|+...+-.....+
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-----~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-----EGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEecCC-----cCcEEEEEEcCCCCeEEEeeccccCC
Confidence 4566666541 2444444433334446788899999998654433222 45667788888878876653221110
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
.....+..+++++++|.+.... |. ..++. ...++... ...++. .+.
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~---------------------g~---v~v~p----~~~dG~l~---~~v~~~-~h~ 134 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHS---------------------GS---VSVYP----LQADGSLQ---PVVQVV-KHT 134 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccC---------------------ce---EEEEE----cccCCccc---cceeee-ecC
Confidence 0012456667888888762110 00 00010 00011000 000111 111
Q ss_pred -CC-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
.| ..+|-+. ......+.||+++|+..... ..++++++++.|.........++ ...
T Consensus 135 g~~p~~rQ~~~--h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v~---------~G~ 191 (346)
T COG2706 135 GSGPHERQESP--HVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEVK---------PGA 191 (346)
T ss_pred CCCCCccccCC--ccceeeeCCCCCEEEEeecC------------CceEEEEEcccCccccccccccC---------CCC
Confidence 11 2233221 23467899999999887543 23788899887766654432221 136
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee---------cCcccceeeEcCCCcEE
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---------LDLRFRSVSWCDDSLAL 313 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~---------~~~~~~~~~ws~Dg~~l 313 (607)
|+|.+.+.|+|+ ++|+..- ++ ..+.++.-++..| +.+.|.. .......+..++||+.|
T Consensus 192 GPRHi~FHpn~k--~aY~v~E--------L~--stV~v~~y~~~~g-~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 192 GPRHIVFHPNGK--YAYLVNE--------LN--STVDVLEYNPAVG-KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred CcceEEEcCCCc--EEEEEec--------cC--CEEEEEEEcCCCc-eEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 789999999998 4444221 11 1222222212222 3322211 11233567789999976
Q ss_pred EEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCC
Q 007338 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (607)
Q Consensus 314 ~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~ 393 (607)
+...... ..--++.+|.++ +..+.+-....+.. .| ..+..++.|+.|++..++.. ...+|
T Consensus 259 YasNRg~-dsI~~f~V~~~~--g~L~~~~~~~teg~--~P--R~F~i~~~g~~Liaa~q~sd--~i~vf----------- 318 (346)
T COG2706 259 YASNRGH-DSIAVFSVDPDG--GKLELVGITPTEGQ--FP--RDFNINPSGRFLIAANQKSD--NITVF----------- 318 (346)
T ss_pred EEecCCC-CeEEEEEEcCCC--CEEEEEEEeccCCc--CC--ccceeCCCCCEEEEEccCCC--cEEEE-----------
Confidence 5443211 122445677666 33333211111110 01 11778899998887766532 33333
Q ss_pred cceeEeeecCCCCeeEE
Q 007338 394 IPFLDLFDINTGSKERI 410 (607)
Q Consensus 394 ~~~l~~~d~~~g~~~~l 410 (607)
+.|.++|+.+.+
T Consensus 319 -----~~d~~TG~L~~~ 330 (346)
T COG2706 319 -----ERDKETGRLTLL 330 (346)
T ss_pred -----EEcCCCceEEec
Confidence 567667766554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=80.61 Aligned_cols=148 Identities=13% Similarity=0.299 Sum_probs=87.0
Q ss_pred cccceEEccCCCEEEEEeecC--cccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~--~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
......|+|+|++|++..... ......-+..+||.++..+.....+.-..++ .+..++|+|+++.++...
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~---- 78 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIY---- 78 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEE----
Confidence 356789999999999988742 1111123457899998887766555322222 267999999977554431
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCce
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~ 188 (607)
|. ....+-++++.+ ....+.. .....+.|||+|++
T Consensus 79 --------------------g~-----------------------~~~~v~lyd~~~~~i~~~~~-~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 79 --------------------GS-----------------------MPAKVTLYDVKGKKIFSFGT-QPRNTISWSPDGRF 114 (194)
T ss_pred --------------------cc-----------------------CCcccEEEcCcccEeEeecC-CCceEEEECCCCCE
Confidence 10 001222233323 2223322 23357899999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
|++..... ....|.+||+...+. +.... ......+.|||||+.
T Consensus 115 l~~~g~~n----------~~G~l~~wd~~~~~~--i~~~~------------~~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 115 LVLAGFGN----------LNGDLEFWDVRKKKK--ISTFE------------HSDATDVEWSPDGRY 157 (194)
T ss_pred EEEEEccC----------CCcEEEEEECCCCEE--eeccc------------cCcEEEEEEcCCCCE
Confidence 99986421 134688999985432 32210 112335999999994
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-06 Score=79.61 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=84.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
+||..+.. +.....+. +.....+.+.+|||+|+++|.+... ....+-++|+++.....+ ....
T Consensus 40 ~l~~~~~~----~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~--------~~~~v~lyd~~~~~i~~~---~~~~- 102 (194)
T PF08662_consen 40 ELFYLNEK----NIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGS--------MPAKVTLYDVKGKKIFSF---GTQP- 102 (194)
T ss_pred EEEEEecC----CCccceee-ccCCCceEEEEECcCCCEEEEEEcc--------CCcccEEEcCcccEeEee---cCCC-
Confidence 45555544 34444443 4444359999999999999988632 123788888874333333 2222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
...+.|||+|++++...-. . ..+.|.++|+.
T Consensus 103 ---~n~i~wsP~G~~l~~~g~~-----------------------n-----------------------~~G~l~~wd~~ 133 (194)
T PF08662_consen 103 ---RNTISWSPDGRFLVLAGFG-----------------------N-----------------------LNGDLEFWDVR 133 (194)
T ss_pred ---ceEEEECCCCCEEEEEEcc-----------------------C-----------------------CCcEEEEEECC
Confidence 4578999999988874210 0 01344445552
Q ss_pred -CCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 166 -GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 166 -g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
.+...-........++|||||++|+..+.. +. .. ....+.+|+..|..+..
T Consensus 134 ~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~-~r-~~-----~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 134 KKKKISTFEHSDATDVEWSPDGRYLATATTS-PR-LR-----VDNGFKIWSFQGRLLYK 185 (194)
T ss_pred CCEEeeccccCcEEEEEEcCCCCEEEEEEec-cc-ee-----ccccEEEEEecCeEeEe
Confidence 221111112234689999999999987643 11 01 12356778877765443
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.5e-07 Score=91.81 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=104.2
Q ss_pred cCCEEEEEeecccccceEEEEecCCCcee----eEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCC
Q 007338 437 NQLKILTSKESKTEITQYHILSWPLKKSS----QITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (607)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~----~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~ 512 (607)
+...+.|..+|+-.|+.+|.+++..++.. +=+..+.++.+.....++++.++|.||.+|+-.|++-...+.. .+
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~d--g~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLD--GS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhhhc--CC
Confidence 34678899999999999999999877422 1122223455544458999999999999999999986665533 34
Q ss_pred CCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchhhHH--------HHhhc
Q 007338 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQ--------RLLLK 584 (607)
Q Consensus 513 lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~--------~~~~~ 584 (607)
.|+++|+||+. . +.-.| .|. .+.-.|..+|++... .+++.|++.+.+|-+ +-.+|
T Consensus 470 ~P~LLygYGay-~-------isl~p-~f~----~srl~lld~G~Vla~----a~VRGGGe~G~~WHk~G~lakKqN~f~D 532 (712)
T KOG2237|consen 470 KPLLLYGYGAY-G-------ISLDP-SFR----ASRLSLLDRGWVLAY----ANVRGGGEYGEQWHKDGRLAKKQNSFDD 532 (712)
T ss_pred CceEEEEeccc-c-------eeecc-ccc----cceeEEEecceEEEE----EeeccCcccccchhhccchhhhcccHHH
Confidence 49999999752 1 21222 232 223477889998886 334445555666643 34779
Q ss_pred HHHHHHHHHHhccccccccc
Q 007338 585 KLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 585 ~~~~v~~~~~~~~~~~~~~~ 604 (607)
-++++++||++|++-++.|.
T Consensus 533 fia~AeyLve~gyt~~~kL~ 552 (712)
T KOG2237|consen 533 FIACAEYLVENGYTQPSKLA 552 (712)
T ss_pred HHHHHHHHHHcCCCCcccee
Confidence 99999999999999887763
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=87.42 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=36.3
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
.+..+.|.|=|+|++..+.+ ..|-+|++.. +-.+.++. |..+... ..-.+.++|||||+
T Consensus 173 ~VKGvs~DP~Gky~ASqsdD-------------rtikvwrt~dw~i~k~It~-pf~~~~~------~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDD-------------RTLKVWRTSDWGIEKSITK-PFEESPL------TTFFLRLSWSPDGH 232 (942)
T ss_pred cccceEECCccCeeeeecCC-------------ceEEEEEcccceeeEeecc-chhhCCC------cceeeecccCCCcC
Confidence 45689999999999988653 2566676543 33334433 3222211 11124599999999
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-05 Score=79.45 Aligned_cols=251 Identities=15% Similarity=0.189 Sum_probs=145.5
Q ss_pred CceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccC
Q 007338 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFES 80 (607)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~ 80 (607)
+-...+||.+-. .|....|..+- ...++...|+++|++||.-.. ...+.++|.+..+. +.+...
T Consensus 194 alg~~vylW~~~----s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~----------~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 194 ALGQSVYLWSAS----SGSVTELCSFG-EELVTSVKWSPDGSHLAVGTS----------DGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred EecceEEEEecC----CCceEEeEecC-CCceEEEEECCCCCEEEEeec----------CCeEEEEehhhccccccccCC
Confidence 345789999976 78888888654 347999999999999998764 35777889876543 333221
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.. ..++.++|. ..++..... . + .|.
T Consensus 259 h~----~rvg~laW~--~~~lssGsr-------------~---------~---------------------------~I~ 283 (484)
T KOG0305|consen 259 HA----SRVGSLAWN--SSVLSSGSR-------------D---------G---------------------------KIL 283 (484)
T ss_pred cC----ceeEEEecc--CceEEEecC-------------C---------C---------------------------cEE
Confidence 11 126788887 333332110 0 0 111
Q ss_pred EEeC-CC-C-eeecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCc
Q 007338 161 LGSL-DG-T-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPV 235 (607)
Q Consensus 161 ~~~~-~g-~-~~~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~ 235 (607)
..|+ .. . ...+. ....+..++|++|+++++--.++ ..+.+||.... ....+.+.
T Consensus 284 ~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H-------- 342 (484)
T KOG0305|consen 284 NHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEH-------- 342 (484)
T ss_pred EEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEecc--------
Confidence 1111 11 0 11011 12245789999999999765432 36888888433 22223221
Q ss_pred ccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEE
Q 007338 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~ 315 (607)
...+..++|+|--+..|+ .++|.. ...+..++. .+| +.....+...++..+.|++..+.|+.
T Consensus 343 -----~aAVKA~awcP~q~~lLA----sGGGs~------D~~i~fwn~--~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 343 -----TAAVKALAWCPWQSGLLA----TGGGSA------DRCIKFWNT--NTG-ARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred -----ceeeeEeeeCCCccCceE----EcCCCc------ccEEEEEEc--CCC-cEecccccCCceeeEEEcCCCCEEEE
Confidence 133456999998776543 333321 235666664 444 22222345678899999999887776
Q ss_pred EEeccccceEEEEEcCCCCCCCceEeeecc--ccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 316 ~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
...+....-.||.+.--. ....+..+. +-. +.|+|||..|+..+.+
T Consensus 405 thG~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~---------la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMK---LVAELLGHTSRVLY---------LALSPDGETIVTGAAD 452 (484)
T ss_pred ecCCCCCcEEEEeccccc---eeeeecCCcceeEE---------EEECCCCCEEEEeccc
Confidence 544444455677664321 223333322 222 8899999988776654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00036 Score=73.84 Aligned_cols=250 Identities=17% Similarity=0.155 Sum_probs=143.5
Q ss_pred eeeeE-EEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 4 FTGIG-IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 4 ~~~~~-~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
-+++. |+.|. +-+...-... ....+....|+--|.+|||-+.+ -.+|-+|+-.+..- .+ +.
T Consensus 285 ssG~f~LyelP----~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~k---------lgQLlVweWqsEsY-Vl---KQ 346 (893)
T KOG0291|consen 285 SSGEFGLYELP----DFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSK---------LGQLLVWEWQSESY-VL---KQ 346 (893)
T ss_pred cCCeeEEEecC----CceEEEEeec-ccceeeEEEecccCCEEEEcCCc---------cceEEEEEeeccce-ee---ec
Confidence 34443 66664 3333333322 22368889999999999998753 45777777654321 11 11
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+....+..++.||||++++....+ |+ .++ +
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eD----------------------gK---VKv------------------------W 377 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAED----------------------GK---VKV------------------------W 377 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCC----------------------Cc---EEE------------------------E
Confidence 1111125688999999998874211 21 111 1
Q ss_pred eC-CC-CeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCcccc
Q 007338 163 SL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYN 238 (607)
Q Consensus 163 ~~-~g-~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~ 238 (607)
|. +| =...++.+ ..+..+.|+.+|+.|+-.+.+ ..+..||+.-. .-|.++.
T Consensus 378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~------------ 432 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTS------------ 432 (893)
T ss_pred eccCceEEEEeccCCCceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecC------------
Confidence 22 22 11222332 256788999998888777653 36778888643 3333332
Q ss_pred cccCCCCc-ceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEE
Q 007338 239 SVREGMRS-ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 239 ~~~~~~~~-~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~ 317 (607)
+.+.. ...+.|-.+.|+.+...+. =.|++|.. .+|.....|..+.+.+..+.|+|+|..|++.+
T Consensus 433 ---P~p~QfscvavD~sGelV~AG~~d~----------F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 433 ---PEPIQFSCVAVDPSGELVCAGAQDS----------FEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ---CCceeeeEEEEcCCCCEEEeeccce----------EEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 11111 2333453444555433322 25777775 56644455666778888999999999898888
Q ss_pred eccccceEEEEEcCCCCCCCceEe-eeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 318 WYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 318 ~~~~~~~~l~~~dl~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
|.+ .-++|-+=-.. +..+.+ ...++.. +.+.|||+.|+...-+
T Consensus 498 WDk--TVRiW~if~s~--~~vEtl~i~sdvl~---------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 498 WDK--TVRIWDIFSSS--GTVETLEIRSDVLA---------VSFRPDGKELAVATLD 541 (893)
T ss_pred ccc--eEEEEEeeccC--ceeeeEeeccceeE---------EEEcCCCCeEEEEEec
Confidence 754 46888663222 233443 2233333 8899999999887754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0012 Score=64.50 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=107.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|+|+.|++... ...|.++++.+++.......... .+..+.|+++++.++....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~----- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTG----PVRDVAASADGTYLASGSS----- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCc----ceeEEEECCCCCEEEEEcC-----
Confidence 5889999999999887653 35788888887754332221111 1457899998876665311
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCCC-CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~~-~~~~~~~~SpDg~~ 188 (607)
...+.++++ ++ ....+... .....+.|+|+++.
T Consensus 72 --------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 72 --------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred --------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 123444444 22 23333322 24567899999765
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
++.... ...+.+|++.+++....... .......+.|+|++. ++....
T Consensus 108 ~~~~~~-------------~~~i~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~--~l~~~~------ 154 (289)
T cd00200 108 LSSSSR-------------DKTIKVWDVETGKCLTTLRG------------HTDWVNSVAFSPDGT--FVASSS------ 154 (289)
T ss_pred EEEecC-------------CCeEEEEECCCcEEEEEecc------------CCCcEEEEEEcCcCC--EEEEEc------
Confidence 555431 13688899885543332110 011234588999865 222211
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
....+.+++. ..+.....+......+..+.|+|++..++.... . ..+.++|+..
T Consensus 155 -----~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~~i~i~d~~~ 208 (289)
T cd00200 155 -----QDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--D--GTIKLWDLST 208 (289)
T ss_pred -----CCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecC--C--CcEEEEECCC
Confidence 0123444443 122122233333345778999999976655432 2 3567778765
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00085 Score=65.59 Aligned_cols=242 Identities=15% Similarity=0.170 Sum_probs=129.2
Q ss_pred eeEEEeccCCCCCC-CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCc
Q 007338 6 GIGIHRLLPDDSLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~ 83 (607)
.+.+.++. ++ ....+.. ....+....|+|+++.|+.... ...|+++++.+++. ..+.....
T Consensus 32 ~i~i~~~~----~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~- 94 (289)
T cd00200 32 TIKVWDLE----TGELLRTLKG--HTGPVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS- 94 (289)
T ss_pred EEEEEEee----CCCcEEEEec--CCcceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC-
Confidence 46677765 33 3333332 2224668999999988877653 36888999987643 33322211
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+.|++++++++.... ...+.+++
T Consensus 95 ----~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~~ 121 (289)
T cd00200 95 ----YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVWD 121 (289)
T ss_pred ----cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEEE
Confidence 2567889988777665310 12334444
Q ss_pred C-CCC-eeecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 164 L-DGT-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 164 ~-~g~-~~~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
+ +++ ...+. ....+..+.|+|+++.|+.... ...+.+||+.+++....... .
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~------------~ 176 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLTG------------H 176 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEec------------C
Confidence 4 232 22222 2234678999999777665541 13688899875543322110 0
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
......+.|+|+++. ++.. .. ...+.+++. ..+.....+......+..+.|++++..++... .
T Consensus 177 ~~~i~~~~~~~~~~~-l~~~-~~-----------~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 239 (289)
T cd00200 177 TGEVNSVAFSPDGEK-LLSS-SS-----------DGTIKLWDL--STGKCLGTLRGHENGVNSVAFSPDGYLLASGS--E 239 (289)
T ss_pred ccccceEEECCCcCE-EEEe-cC-----------CCcEEEEEC--CCCceecchhhcCCceEEEEEcCCCcEEEEEc--C
Confidence 112346899999863 2221 11 123444443 11111122222334567789999977665543 1
Q ss_pred ccceEEEEEcCCCCCCCceEeeec--cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 321 TSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 321 ~~~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. ..|+++++... .....+... .+.. +.|+++++.++...
T Consensus 240 ~--~~i~i~~~~~~-~~~~~~~~~~~~i~~---------~~~~~~~~~l~~~~ 280 (289)
T cd00200 240 D--GTIRVWDLRTG-ECVQTLSGHTNSVTS---------LAWSPDGKRLASGS 280 (289)
T ss_pred C--CcEEEEEcCCc-eeEEEccccCCcEEE---------EEECCCCCEEEEec
Confidence 1 35777777652 111222211 1222 77888887665543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.001 Score=68.16 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=63.3
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+..+|||-|.+|+-...+ +-.|| ||+. .++.+..... +.-..+||..++|+..++....
T Consensus 213 etyv~wSP~GTYL~t~Hk~---------GI~lW-----GG~~f~r~~RF~Hp~----Vq~idfSP~EkYLVT~s~~p~~- 273 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ---------GIALW-----GGESFDRIQRFYHPG----VQFIDFSPNEKYLVTYSPEPII- 273 (698)
T ss_pred eeeEEecCCceEEEEEecc---------ceeee-----cCccHHHHHhccCCC----ceeeecCCccceEEEecCCccc-
Confidence 5679999999998877653 46677 5653 3443333322 4567899998877764321100
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCC--CC--ceeeeeeCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGT--PA--VYTAVEPSPD 185 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~--~~--~~~~~~~SpD 185 (607)
. . ..+. ...+|.+.|+ +|... .+.. .. ....+.||.|
T Consensus 274 -------------------~-----------~-~~d~------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D 316 (698)
T KOG2314|consen 274 -------------------V-----------E-EDDN------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD 316 (698)
T ss_pred -------------------c-----------C-cccC------CCceEEEEEccccchhcceeccCCCccccceEEeccC
Confidence 0 0 0000 1368899999 88433 2221 22 2347899999
Q ss_pred CceEEEEE
Q 007338 186 QKYVLITS 193 (607)
Q Consensus 186 g~~i~~~~ 193 (607)
+++++-..
T Consensus 317 dKy~Arm~ 324 (698)
T KOG2314|consen 317 DKYFARMT 324 (698)
T ss_pred CceeEEec
Confidence 99987654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0049 Score=62.89 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=28.2
Q ss_pred EEEEEeecCcccccCCCceeEEEEECCC-CceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 44 RIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 44 ~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+|+.+. ....|.++++.+ |+.+.+-..... .....+.++||+++|+..
T Consensus 2 ~~~y~~~~--------~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~ 52 (330)
T PRK11028 2 QIVYIASP--------ESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVG 52 (330)
T ss_pred eEEEEEcC--------CCCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEE
Confidence 34676653 236677778753 554333211211 114567899998877764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0041 Score=63.49 Aligned_cols=152 Identities=21% Similarity=0.290 Sum_probs=83.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+.+.++||||+++|-... ...++++|=.+|+..-...... .....+-.+.||||++.++....+..
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaDkt-- 258 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSD-AHKGSIFALSWSPDSTQFLTVSADKT-- 258 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCC-CccccEEEEEECCCCceEEEecCCce--
Confidence 5788999999999776643 3588999999988653332211 12223558899999776665432111
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCccccc--ceeeeccceEEEEeCCCCeeecCC------------CCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES--LFDYYTTAQLVLGSLDGTAKDFGT------------PAVY 177 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~~lt~------------~~~~ 177 (607)
-.++..+.. +. .+++. .....+.. +.. ....+|..++++|...-|.. ...+
T Consensus 259 ---------~KIWdVs~~-sl--v~t~~--~~~~v~dqqvG~l-Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 259 ---------IKIWDVSTN-SL--VSTWP--MGSTVEDQQVGCL-WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI 323 (603)
T ss_pred ---------EEEEEeecc-ce--EEEee--cCCchhceEEEEE-EeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence 111211110 00 00000 00000000 001 13567777777775433311 1245
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
+.+..|||+++|+-.+.+ ..|-.|+..+|...+|
T Consensus 324 TaLtv~~d~~~i~SgsyD-------------G~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYD-------------GHINSWDSGSGTSDRL 357 (603)
T ss_pred eEEEEcCCCCEEEeeccC-------------ceEEEEecCCcccccc
Confidence 688999999888766532 3677788877755544
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=71.43 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=36.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
-+....|||||++||--+. .+.|-++|+++|+. +.|..+... +..++|-|
T Consensus 159 WVlcvawsPDgk~iASG~~----------dg~I~lwdpktg~~~g~~l~gH~K~-----It~Lawep 210 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSK----------DGSIRLWDPKTGQQIGRALRGHKKW-----ITALAWEP 210 (480)
T ss_pred EEEEEEECCCcchhhcccc----------CCeEEEecCCCCCcccccccCcccc-----eeEEeecc
Confidence 4778999999999987664 36788889998875 455444332 56777765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0091 Score=58.53 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=75.0
Q ss_pred ccceeeEcCCCcE--EEEEEeccccceEEEEEcCCCCCCCceEee-----eccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 300 RFRSVSWCDDSLA--LVNETWYKTSQTRTWLVCPGSKDVAPRVLF-----DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 300 ~~~~~~ws~Dg~~--l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
....+.|.|+++. ++.+- ...-.+|.++... ++.+.|- ..++.. ..+...+..++||+.||++..
T Consensus 192 GPRHi~FHpn~k~aY~v~EL---~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNEL---NSTVDVLEYNPAV--GKFEELQTIDTLPEDFTG---TNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred CcceEEEcCCCcEEEEEecc---CCEEEEEEEcCCC--ceEEEeeeeccCccccCC---CCceeEEEECCCCCEEEEecC
Confidence 4567899999984 23322 2334667777654 4455541 222222 112223677999999888764
Q ss_pred eccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc
Q 007338 373 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (607)
Q Consensus 373 ~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (607)
.. .... +++++..+|+.+.+..-........ ...++++++.++...+..++ -
T Consensus 264 g~--dsI~----------------~f~V~~~~g~L~~~~~~~teg~~PR---------~F~i~~~g~~Liaa~q~sd~-i 315 (346)
T COG2706 264 GH--DSIA----------------VFSVDPDGGKLELVGITPTEGQFPR---------DFNINPSGRFLIAANQKSDN-I 315 (346)
T ss_pred CC--CeEE----------------EEEEcCCCCEEEEEEEeccCCcCCc---------cceeCCCCCEEEEEccCCCc-E
Confidence 21 1222 3356766676543321110000001 13467788888887777676 5
Q ss_pred eEEEEecCCCceeeEec
Q 007338 453 QYHILSWPLKKSSQITN 469 (607)
Q Consensus 453 ~l~~~~~~~~~~~~Lt~ 469 (607)
.+|.++..+|+++.+..
T Consensus 316 ~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 316 TVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEEcCCCceEEeccc
Confidence 58899988888877654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00046 Score=64.77 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=47.6
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
..|++++. ...+++...|+||++ |++... ...|.++|+++|+.++........ +-.+++++|.+
T Consensus 55 ~~r~~~GH--sH~v~dv~~s~dg~~-alS~sw---------D~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~ 118 (315)
T KOG0279|consen 55 PVRRLTGH--SHFVSDVVLSSDGNF-ALSASW---------DGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNR 118 (315)
T ss_pred eeeeeecc--ceEecceEEccCCce-EEeccc---------cceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCc
Confidence 45566653 236899999999986 565543 257888899999876554332221 55889999988
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
.++..
T Consensus 119 qivSG 123 (315)
T KOG0279|consen 119 QIVSG 123 (315)
T ss_pred eeecC
Confidence 87763
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-06 Score=77.13 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=71.1
Q ss_pred CCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEE
Q 007338 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 479 ~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~V 558 (607)
.+++=.++|++.+|-.|.|||++|..- +.++|+||++|+ |. |+- + .++.+-.|++.||+|
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhG--Y~---------g~~-g----~~~~~l~wa~~Gyav 112 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHG--YG---------GRG-G----EWHDMLHWAVAGYAV 112 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEee--cc---------CCC-C----CccccccccccceeE
Confidence 357778999999999999999999862 246799998874 11 110 1 123345899999999
Q ss_pred EeCCCCceeccCCC-------C----------------chh-hHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 559 LAGPSIPIIGEGLW-------S----------------NWF-QVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 559 l~~~~~~~~g~g~~-------~----------------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
|. .+. +|.|+. + .++ +-+.+..|+..+|+-|..-.-||+.|+-
T Consensus 113 f~-Mdv--RGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~ 179 (321)
T COG3458 113 FV-MDV--RGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIG 179 (321)
T ss_pred EE-Eec--ccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheE
Confidence 97 443 342221 1 111 1145577899999999999999998873
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0073 Score=62.00 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=108.4
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccc---cCCCCcceeec
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSV---REGMRSISWRA 251 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~wsp 251 (607)
....++++||+++|+++... ...+.+++++. |..........-+ ..+++.. ...+..+.++|
T Consensus 88 ~p~~i~~~~~g~~l~vany~------------~g~v~v~~l~~~g~l~~~~~~~~~~--g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYG------------GGSVSVFPLDDDGSLGEVVQTVRHE--GSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSEEEEEEEEEESE--EEESSTTTTSSTCEEEEEE-T
T ss_pred CcEEEEEecCCCEEEEEEcc------------CCeEEEEEccCCcccceeeeecccC--CCCCcccccccccceeEEECC
Confidence 33568999999999988543 23566777653 5444432100000 0000000 11122488999
Q ss_pred CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCcee---ee-ecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 252 dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---l~-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
||+. +|+... + .+.+++++.+...+ +... +. ........+.|+|||+.++... .. .+.|.
T Consensus 154 dg~~--v~v~dl--G--------~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~--s~~v~ 217 (345)
T PF10282_consen 154 DGRF--VYVPDL--G--------ADRVYVYDIDDDTG-KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-EL--SNTVS 217 (345)
T ss_dssp TSSE--EEEEET--T--------TTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TT--TTEEE
T ss_pred CCCE--EEEEec--C--------CCEEEEEEEeCCCc-eEEEeeccccccCCCCcEEEEcCCcCEEEEec-CC--CCcEE
Confidence 9983 344322 2 23455544311111 1211 11 1122345688999998543322 22 23565
Q ss_pred EEcCCCCCCCceEeeecccc-ccccC-CCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCC
Q 007338 328 LVCPGSKDVAPRVLFDRVFE-NVYSD-PGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (607)
Q Consensus 328 ~~dl~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (607)
.+++....+..+.+...... ..+.. .....+..+|||+.||+.....+ ...+| .+|.++|
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~--sI~vf----------------~~d~~~g 279 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN--SISVF----------------DLDPATG 279 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT--EEEEE----------------EECTTTT
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC--EEEEE----------------EEecCCC
Confidence 55655222333333110000 00000 00112678999999888764311 22222 3444566
Q ss_pred CeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEec
Q 007338 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (607)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~ 469 (607)
+.+.+-.-.... ..+.. ..++++++++++.....+. -.+|.++..+|.++.+..
T Consensus 280 ~l~~~~~~~~~G--~~Pr~-------~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 280 TLTLVQTVPTGG--KFPRH-------FAFSPDGRYLYVANQDSNT-VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TEEEEEEEEESS--SSEEE-------EEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEE
T ss_pred ceEEEEEEeCCC--CCccE-------EEEeCCCCEEEEEecCCCe-EEEEEEeCCCCcEEEecc
Confidence 665542111000 01122 3568899888776555444 446777777888777653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.2e-05 Score=81.81 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=60.1
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCccc--ccCCCceeEEEEECCCCceeecccC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEED--NVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~--~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
+.+.||+-+. +++.++++. .. ..+.|+|||||+.|+|+++...-. -...+..+||++++++++.++ ..
T Consensus 377 ~~s~Lwv~~~-----gg~~~~lt~--g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~ 446 (591)
T PRK13616 377 PASSLWVGPL-----GGVAVQVLE--GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV 446 (591)
T ss_pred cceEEEEEeC-----CCcceeeec--CC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc
Confidence 3568888885 566688862 33 589999999999999986431000 001346799999999988865 22
Q ss_pred CCccccccccceEEecCCeEEEEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+. . +..+.|||||+.+++.
T Consensus 447 ~g-~----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 447 PG-P----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CC-C----cCeEEECCCCCEEEEE
Confidence 32 2 7899999997755554
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00053 Score=67.84 Aligned_cols=195 Identities=19% Similarity=0.187 Sum_probs=106.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC-e-EEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS-T-LLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~-~-~l~~~~~~~~ 109 (607)
.++...+|+|++.||-.+- .+...|| +..+....+...... ..++...|.|.. . -++....+
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW--~~~~~~~~~~l~gH~----~~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVW--SVPQCNLLQTLRGHT----SRVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEe--ecCCcceeEEEeccc----cceeeEEEccCCCccceeeeccC--
Confidence 4667899999999988764 4555666 555665544443322 237789999873 3 33332100
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCeeecCCC-CceeeeeeCCCCce
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKY 188 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~-~~~~~~~~SpDg~~ 188 (607)
| ...||.++-+....+|+.. ..+..++|.|+|++
T Consensus 241 --------------------g-------------------------tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 241 --------------------G-------------------------TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred --------------------C-------------------------ceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 1 1234433322233444432 35678999999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
|+-++.+ +.-.+||+.++..-.+-+ +-.+++.+++|-+||+ | + ..++-|.
T Consensus 276 L~TasfD-------------~tWRlWD~~tk~ElL~QE------------GHs~~v~~iaf~~DGS--L--~-~tGGlD~ 325 (459)
T KOG0272|consen 276 LGTASFD-------------STWRLWDLETKSELLLQE------------GHSKGVFSIAFQPDGS--L--A-ATGGLDS 325 (459)
T ss_pred eeecccc-------------cchhhcccccchhhHhhc------------ccccccceeEecCCCc--e--e-eccCccc
Confidence 9877542 234568888763222111 1124566799999998 2 1 1222221
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEE
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~ 329 (607)
.. . +||. -+|...-.|..+-..+..+.|||+|..++.... ++..++|-+
T Consensus 326 ~~------R--vWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDL 374 (459)
T KOG0272|consen 326 LG------R--VWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDL 374 (459)
T ss_pred hh------h--eeec--ccCcEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeee
Confidence 11 1 1111 111011111122335667999999988776542 345677744
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0042 Score=62.85 Aligned_cols=90 Identities=16% Similarity=-0.031 Sum_probs=50.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCc--ccccCCCceeEEEEECCCCcee-ecccCC
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAK-PLFESP 81 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~-~lt~~~ 81 (607)
..+++.|.. +++... .++.+...+. .+||||+.|+.....-+ .-| +....|-++|+++++.. .+- .+
T Consensus 27 ~~v~ViD~~----~~~v~g--~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G--~~~d~V~v~D~~t~~~~~~i~-~p 96 (352)
T TIGR02658 27 TQVYTIDGE----AGRVLG--MTDGGFLPNP-VVASDGSFFAHASTVYSRIARG--KRTDYVEVIDPQTHLPIADIE-LP 96 (352)
T ss_pred ceEEEEECC----CCEEEE--EEEccCCCce-eECCCCCEEEEEeccccccccC--CCCCEEEEEECccCcEEeEEc-cC
Confidence 456677765 333322 2334434444 59999999866654100 001 23467999999998864 332 11
Q ss_pred Ccc---ccccccceEEecCCeEEEEE
Q 007338 82 DIC---LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 82 ~~~---~~~~~~~~~Wspd~~~l~~~ 104 (607)
... .......+..||||+.+|+.
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEe
Confidence 110 00112378899999987764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0023 Score=59.62 Aligned_cols=225 Identities=13% Similarity=0.215 Sum_probs=116.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~~ 110 (607)
.+....|.-||.+||-.+. ++...+|-++. . +.++.....+..+.+..+.|.|. ..+++.+..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e~--~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLER--D--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEecc--h--hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 5889999999999988764 34455554443 3 22322222222223568899976 456555321
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCCCCceeeeeeCCCCce
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~~~~~~~~SpDg~~ 188 (607)
++ .+-+++. .++.. ++.....-..+.|||||++
T Consensus 86 -------------------dk--------------------------~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~ 120 (313)
T KOG1407|consen 86 -------------------DK--------------------------TIRIWDIRSGKCTARIETKGENINITWSPDGEY 120 (313)
T ss_pred -------------------Cc--------------------------eEEEEEeccCcEEEEeeccCcceEEEEcCCCCE
Confidence 01 1222333 44322 2222222246899999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
+++...+ ..|-.+|....++..-.+.+ .....+.|.-++. ++|+. .+.|..
T Consensus 121 ~~~~~kd-------------D~it~id~r~~~~~~~~~~~-------------~e~ne~~w~~~nd--~Fflt-~GlG~v 171 (313)
T KOG1407|consen 121 IAVGNKD-------------DRITFIDARTYKIVNEEQFK-------------FEVNEISWNNSND--LFFLT-NGLGCV 171 (313)
T ss_pred EEEecCc-------------ccEEEEEecccceeehhccc-------------ceeeeeeecCCCC--EEEEe-cCCceE
Confidence 9998542 14556666554333211110 1122477775554 44442 222211
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee--eccc
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVF 346 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~--~~~~ 346 (607)
.|+-+.. +. ....+..+...--.+.|+|+|++|+.... +....|| |++.- .=.|.+. ++.+
T Consensus 172 --------~ILsyps--Lk--pv~si~AH~snCicI~f~p~GryfA~GsA--DAlvSLW--D~~EL-iC~R~isRldwpV 234 (313)
T KOG1407|consen 172 --------EILSYPS--LK--PVQSIKAHPSNCICIEFDPDGRYFATGSA--DALVSLW--DVDEL-ICERCISRLDWPV 234 (313)
T ss_pred --------EEEeccc--cc--cccccccCCcceEEEEECCCCceEeeccc--cceeecc--ChhHh-hhheeeccccCce
Confidence 1222111 10 11223334444557889999999876542 2234566 44321 0134443 4445
Q ss_pred cccccCCCCCCeeeCCCCCEEEEEee
Q 007338 347 ENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.. ++++-||++|+-.++
T Consensus 235 RT---------lSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 235 RT---------LSFSHDGRMLASASE 251 (313)
T ss_pred EE---------EEeccCcceeeccCc
Confidence 54 889999998776554
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.2e-06 Score=81.59 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=67.6
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
.....|+|++.+|..|.|||++|.+-+ .++|+||.+|+. ++. ...+.....||++||+||
T Consensus 54 ~~vy~v~f~s~~g~~V~g~l~~P~~~~----~~~Pavv~~hGy------------g~~----~~~~~~~~~~a~~G~~vl 113 (320)
T PF05448_consen 54 VEVYDVSFESFDGSRVYGWLYRPKNAK----GKLPAVVQFHGY------------GGR----SGDPFDLLPWAAAGYAVL 113 (320)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEES-SS----SSEEEEEEE--T------------T------GGGHHHHHHHHHTT-EEE
T ss_pred EEEEEEEEEccCCCEEEEEEEecCCCC----CCcCEEEEecCC------------CCC----CCCcccccccccCCeEEE
Confidence 467789999999999999999998522 356999988742 111 001122346899999999
Q ss_pred eCCCCceeccC-----------CC------------CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 560 AGPSIPIIGEG-----------LW------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~g-----------~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
. .++ +|.| .. ..+-+-+.+..|+++||+.|.++.-+|+++|.
T Consensus 114 ~-~d~--rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~ 178 (320)
T PF05448_consen 114 A-MDV--RGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIG 178 (320)
T ss_dssp E-E----TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred E-ecC--CCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEE
Confidence 6 222 2211 10 12334467889999999999999999999874
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00086 Score=67.14 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=78.0
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
...+....|+|+|...+|.+.+ +.-+|.||+.+.+..++...-.. -...+..|.-|+++.+|++.
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~r---------rky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~fia~~----- 321 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGR---------RKYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSNFIAIA----- 321 (514)
T ss_pred cCccceeeecCCCceEEEeccc---------ceEEEEeeccccccccccCCCCc-ccchhheeEecCCCCeEEEc-----
Confidence 3357889999999977777654 57899999999988777422110 01124578888998866653
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCc
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQK 187 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~ 187 (607)
|+ .++|.++.. +++ ...+.-++.+..+.||.||+
T Consensus 322 --------------------G~------------------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 322 --------------------GN------------------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred --------------------cc------------------------CceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence 21 234555554 333 22233345678899999998
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.|+.... ..+||+||+....
T Consensus 358 ~l~~~~~-------------~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 358 ELLASGG-------------TGEVYVWNLRQNS 377 (514)
T ss_pred EEEEEcC-------------CceEEEEecCCcc
Confidence 8887743 1379999997653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=70.53 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=50.5
Q ss_pred eecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 24 VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 24 lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
|.+.++...+...+|.+||..++-.+- +...|.++|+++|.-.+|-....++ ++.+.||||+.++|-
T Consensus 189 vl~~pgh~pVtsmqwn~dgt~l~tAS~---------gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 189 VLQDPGHNPVTSMQWNEDGTILVTASF---------GSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFA 255 (445)
T ss_pred heeCCCCceeeEEEEcCCCCEEeeccc---------CcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEE
Confidence 444555557889999999998876653 4578999999999877775222222 668899999998887
Q ss_pred E
Q 007338 104 T 104 (607)
Q Consensus 104 ~ 104 (607)
+
T Consensus 256 A 256 (445)
T KOG2139|consen 256 A 256 (445)
T ss_pred e
Confidence 5
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00056 Score=67.48 Aligned_cols=230 Identities=17% Similarity=0.245 Sum_probs=116.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....||||.++|+--.. ...++++|+.+|+.+.+.... ....+.++.|-||+..++...++
T Consensus 271 ~V~yi~wSPDdryLlaCg~----------~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~d---- 333 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGF----------DEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPD---- 333 (519)
T ss_pred ceEEEEECCCCCeEEecCc----------hHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCC----
Confidence 5889999999998754322 234999999999987665332 11235689999998765553322
Q ss_pred CCCCccCCCCCeeeecCCcccc-------ccccccccccCcccccc-eeeeccceEEEEeCCC-Cee-ecCCCCceeeee
Q 007338 112 PPKKTMVPLGPKIQSNEQKNII-------ISRMTDNLLKDEYDESL-FDYYTTAQLVLGSLDG-TAK-DFGTPAVYTAVE 181 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g-~~~-~lt~~~~~~~~~ 181 (607)
+.++...-+|+.. .++++. +.-.+|+.. .......++..++... .-+ .++....+++++
T Consensus 334 ---------r~i~~wdlDgn~~~~W~gvr~~~v~d--lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 334 ---------RTIIMWDLDGNILGNWEGVRDPKVHD--LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred ---------CcEEEecCCcchhhcccccccceeEE--EEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 1122222222210 011111 111122221 1111234555555522 222 234444677999
Q ss_pred eCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
+|.||+++++... ..++.+||++.. +.+.. ++|... |. .++.-+
T Consensus 403 iS~d~k~~LvnL~-------------~qei~LWDl~e~--~lv~k--------------Y~Ghkq------~~-fiIrSC 446 (519)
T KOG0293|consen 403 ISKDGKLALVNLQ-------------DQEIHLWDLEEN--KLVRK--------------YFGHKQ------GH-FIIRSC 446 (519)
T ss_pred EcCCCcEEEEEcc-------------cCeeEEeecchh--hHHHH--------------hhcccc------cc-eEEEec
Confidence 9999999888743 247889998732 11111 111110 00 011111
Q ss_pred eecCCCCccc-cCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCc-EEEEEEeccccceEEEEE
Q 007338 262 AQDRGDANVE-VSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 262 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~-~l~~~~~~~~~~~~l~~~ 329 (607)
+-+..+.-+. ....+++|+|.. ..|.....|..+...+..++|+|-.. .+++. .+++.-+||-.
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa--sDDgtIRIWg~ 512 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSGHSKTVNCVSWNPADPEMFASA--SDDGTIRIWGP 512 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEc--cCCceeEeecCCcceeeEEecCCCCHHHhhcc--CCCCeEEEecC
Confidence 1111111111 123356777774 44433345555556677889998765 34443 33455677744
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=69.80 Aligned_cols=131 Identities=24% Similarity=0.324 Sum_probs=83.8
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~ 114 (607)
--++||+|++||..++ ..|.+.|..+=+..+|...-+ .+.-+.|+.|+-.++.....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeeec-------
Confidence 4589999999998863 588999998888777753322 15678999887655543110
Q ss_pred CccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-Cee-ecCC-CCceeeeeeCCCCceEEE
Q 007338 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGT-PAVYTAVEPSPDQKYVLI 191 (607)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~-~lt~-~~~~~~~~~SpDg~~i~~ 191 (607)
...+.+.++.. +.. .+.. .+....++|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 11222233311 111 1211 234568999999999998
Q ss_pred EEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
++. |..+|-+|.+.+.+..-|.. ...+...+++.|||+
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~-------------pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPH-------------PKTNVKGYAFHPDGQ 146 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEecc-------------cccCceeEEECCCCc
Confidence 863 23477888888876665543 123445688899998
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.006 Score=62.90 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=111.0
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc---cccccceEEecCCeEEEEEe
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL---NAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~---~~~~~~~~Wspd~~~l~~~~ 105 (607)
-+....+..+||||++|+.... ...++.++|.++.++.+......... ...+..+.-++.+..+++..
T Consensus 76 ~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred cCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 3446788999999999865543 24689999999988754322111000 00011222233333222210
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC---eeecCCCCceeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTPAVYTAVE 181 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~lt~~~~~~~~~ 181 (607)
....++|++|. +.+ .+.+.......+..
T Consensus 147 ------------------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 147 ------------------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp ------------------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred ------------------------------------------------ccCCeEEEEEeccccccceeeecccccccccc
Confidence 02467888887 332 22333344567899
Q ss_pred eCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc-CCC-CcceeecCCCceEEE
Q 007338 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR-EGM-RSISWRADKPSTLYW 259 (607)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~wspdg~~~l~~ 259 (607)
|+|||++++...... ..+.++|+++++...+........ +. .... .-. ..+.|...+....+
T Consensus 179 ~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~-~~--~~~~~php~~g~vw~~~~~~~~~- 242 (369)
T PF02239_consen 179 FDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPH-PG--PGANFPHPGFGPVWATSGLGYFA- 242 (369)
T ss_dssp E-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBE-ET--TEEEEEETTTEEEEEEEBSSSSE-
T ss_pred cCcccceeeeccccc------------ceeEEEeeccceEEEEeecccccc-cc--ccccccCCCcceEEeecccccee-
Confidence 999999998876532 367888988776655433110000 00 0000 001 12456555432111
Q ss_pred EEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCce
Q 007338 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (607)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~ 339 (607)
+...+.... .+++. .+....+.+.. .+.-..+.-+||++.+..+.........|.++|..+.+ ...
T Consensus 243 ~~~ig~~~v----------~v~d~--~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~ 308 (369)
T PF02239_consen 243 IPLIGTDPV----------SVHDD--YAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVK 308 (369)
T ss_dssp EEEEE--TT----------T-STT--TBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE
T ss_pred cccccCCcc----------ccchh--hcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeE
Confidence 111111100 00110 01101122222 22224567799999876663222235689999988731 111
Q ss_pred Eee-ec--cccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 340 VLF-DR--VFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 340 ~l~-~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.+. .. .+-. +.|++||+.++++...
T Consensus 309 ~i~~~~~~~~~h---------~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 309 TITPGPGKRVVH---------MEFNPDGKEVWVSVWD 336 (369)
T ss_dssp -HHHHHT--EEE---------EEE-TTSSEEEEEEE-
T ss_pred EEeccCCCcEec---------cEECCCCCEEEEEEec
Confidence 221 11 1223 8899999999998765
|
... |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=70.93 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=96.0
Q ss_pred eEEEeccCCCCCCCeeeeecCCC--CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPD--GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~--~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
+|..||. +++..+|..+-. .+.......||||+.||+... ...|+++...+++. ++..+
T Consensus 282 ~ysyDle----~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----------~G~I~lLhakT~el--i~s~K--- 342 (514)
T KOG2055|consen 282 LYSYDLE----TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----------NGHIHLLHAKTKEL--ITSFK--- 342 (514)
T ss_pred EEEeecc----ccccccccCCCCcccchhheeEecCCCCeEEEccc----------CceEEeehhhhhhh--hheee---
Confidence 5677775 666666653222 225788899999998888643 47899998888874 33222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
++..++.+.|+.|++.|+... ..+++|++|+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~-------------------------------------------------~~GeV~v~nl 373 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG-------------------------------------------------GTGEVYVWNL 373 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc-------------------------------------------------CCceEEEEec
Confidence 233478999998887666531 1246777777
Q ss_pred CC--CeeecCCCCc--eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC----CCeeEEeccCCCCCCCCcc
Q 007338 165 DG--TAKDFGTPAV--YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD----GKLVRELCDLPPAEDIPVC 236 (607)
Q Consensus 165 ~g--~~~~lt~~~~--~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~l~~~~~~~~~~~~ 236 (607)
.. -..++...+. -..++.|++|++++.-+.. .-+-+||.+ ++..+++..
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~-------------GiVNIYd~~s~~~s~~PkPik~---------- 430 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS-------------GIVNIYDGNSCFASTNPKPIKT---------- 430 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCc-------------ceEEEeccchhhccCCCCchhh----------
Confidence 32 2344444332 2488999999988876532 123344432 344444432
Q ss_pred cccccCCCCcceeecCCC
Q 007338 237 YNSVREGMRSISWRADKP 254 (607)
Q Consensus 237 ~~~~~~~~~~~~wspdg~ 254 (607)
++.....+.++++++|++
T Consensus 431 ~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred hhhhheeeeeeeeCcchh
Confidence 111224455789999987
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0027 Score=58.81 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=81.6
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCC-CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.++=|+|+. ++...++..+..- ..+....|--||++++-.+. ++...|| |+..-..+++..+..
T Consensus 61 qhvRlyD~~----S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse--------Dgt~kIW--dlR~~~~qR~~~~~s- 125 (311)
T KOG0315|consen 61 QHVRLYDLN----SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE--------DGTVKIW--DLRSLSCQRNYQHNS- 125 (311)
T ss_pred CeeEEEEcc----CCCCCceeEEeccCCceEEEEEeecCeEEEecCC--------CceEEEE--eccCcccchhccCCC-
Confidence 456677776 5555455544332 36888999999998754432 4544454 776655555544332
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+...|++.-||... ..++|++.|
T Consensus 126 ----pVn~vvlhpnQteLis~d-------------------------------------------------qsg~irvWD 152 (311)
T KOG0315|consen 126 ----PVNTVVLHPNQTELISGD-------------------------------------------------QSGNIRVWD 152 (311)
T ss_pred ----CcceEEecCCcceEEeec-------------------------------------------------CCCcEEEEE
Confidence 245566667755555420 134666777
Q ss_pred C-CC-CeeecCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 164 L-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 164 ~-~g-~~~~lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
+ +. =..+|.++ ..+.++.+.|||++++...+. .+.|+|++-++
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-------------G~cyvW~l~~~ 199 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-------------GNCYVWRLLNH 199 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-------------ccEEEEEccCC
Confidence 7 33 23344333 256789999999999877542 37899987653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0026 Score=63.93 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=128.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|+-+|.+|+-... ...+.+||..+|+..|.....+.. --.+.|-.+..+.....
T Consensus 278 PI~slKWnk~G~yilS~~v----------D~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~t------ 337 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGV----------DGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSST------ 337 (524)
T ss_pred ceEEEEEcCCCCEEEeccC----------CccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecCC------
Confidence 5888999999999876542 346777899999887765544421 13578876666544321
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC--CCCeeecC-CCCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFG-TPAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~lt-~~~~~~~~~~SpDg~~ 188 (607)
.+.|+++-+ +.....+. ....+..+.|.|-|+-
T Consensus 338 --------------------------------------------d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 338 --------------------------------------------DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL 373 (524)
T ss_pred --------------------------------------------CceEEEEEecCCCcceeeecccCceEEEEECCCCce
Confidence 122333333 23333332 2345678999999887
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
|+-.+.+ ..|-+|+... .....|.. -......+.|||+|+.. + ....+.
T Consensus 374 LaS~SdD-------------~TlkiWs~~~~~~~~~l~~-------------Hskei~t~~wsp~g~v~--~--n~~~~~ 423 (524)
T KOG0273|consen 374 LASCSDD-------------GTLKIWSMGQSNSVHDLQA-------------HSKEIYTIKWSPTGPVT--S--NPNMNL 423 (524)
T ss_pred EEEecCC-------------CeeEeeecCCCcchhhhhh-------------hccceeeEeecCCCCcc--C--CCcCCc
Confidence 7766532 3566776432 22111110 00122358899998731 0 000011
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeecccc
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~ 347 (607)
....+.....+.++++ ..|-....++++...+..++|||+|+++++.+- ++ .+.+.+..+.+ -.+...+.
T Consensus 424 ~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~--dg--~V~iws~~~~~-l~~s~~~~--- 493 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL--DG--CVHIWSTKTGK-LVKSYQGT--- 493 (524)
T ss_pred eEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCC--CC--eeEeccccchh-eeEeecCC---
Confidence 1111223344556665 333233455566677889999999999887642 12 34444554421 12222111
Q ss_pred ccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 348 NVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.+.+.+.|+.+|.+|.....+
T Consensus 494 -----~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 494 -----GGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred -----CeEEEEEEcCCCCEEEEEecC
Confidence 111348999999988776643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.017 Score=59.13 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=42.5
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee---ecCcccceeeEcCCCcEEEEEEecccc
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~---~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
.+++||||+. |+..- ...++++.| +.+|++.-.|. .+.+.+..+.||||++.|+..+.. .
T Consensus 195 ~VRysPDG~~---Fat~g----------sDgki~iyD--Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD--k 257 (603)
T KOG0318|consen 195 CVRYSPDGSR---FATAG----------SDGKIYIYD--GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD--K 257 (603)
T ss_pred eEEECCCCCe---EEEec----------CCccEEEEc--CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC--c
Confidence 5789999883 33221 223566655 36664555555 234567789999999988876543 2
Q ss_pred ceEEEEEc
Q 007338 323 QTRTWLVC 330 (607)
Q Consensus 323 ~~~l~~~d 330 (607)
.-+||-+.
T Consensus 258 t~KIWdVs 265 (603)
T KOG0318|consen 258 TIKIWDVS 265 (603)
T ss_pred eEEEEEee
Confidence 35777554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.1e-05 Score=50.17 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=26.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEE
Q 007338 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (607)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v 66 (607)
++++.. ......|.|||||++|+|++++.. .+..+||+
T Consensus 2 ~~~t~~--~~~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNS--PGDDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES-S--SSSEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCcccC--CccccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 466633 336899999999999999998721 26788885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.063 Score=54.43 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec-CCCCCCCCCccCC
Q 007338 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVP 119 (607)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~-~~~~~~~~~~~~~ 119 (607)
|+++ +|+.+.... ...+.++++|.++++.......... ... ..|||++.++.... -.|..
T Consensus 11 ~~~~-v~V~d~~~~----~~~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~-------- 71 (352)
T TIGR02658 11 DARR-VYVLDPGHF----AATTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIA-------- 71 (352)
T ss_pred CCCE-EEEECCccc----ccCceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEeccccccc--------
Confidence 5555 677653100 1138999999999886543322221 223 48899887776521 11100
Q ss_pred CCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCC--------CceeeeeeCCCCceE
Q 007338 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--------AVYTAVEPSPDQKYV 189 (607)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~--------~~~~~~~~SpDg~~i 189 (607)
+++ ....|-++|+ +.+ ..+|.-+ ..-..+.+||||++|
T Consensus 72 --------------------------~G~------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 72 --------------------------RGK------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred --------------------------cCC------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEE
Confidence 000 1234556666 443 3233211 122378999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
++.... | ...+-++|+.++++-.
T Consensus 120 ~V~n~~-p----------~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 120 LFYQFS-P----------SPAVGVVDLEGKAFVR 142 (352)
T ss_pred EEecCC-C----------CCEEEEEECCCCcEEE
Confidence 987432 2 2368899998775443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00099 Score=65.79 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=39.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC-c-eeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E-AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~-~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+-..+||++|++||-.+. +...-||....++. + ...+..+.. .+.-+.||||.+.++.
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLA 286 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEe
Confidence 4777899999999998764 34556777666544 1 123322222 2678899999887665
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.051 Score=52.30 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=121.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~~ 110 (607)
.+....+|+||..++..+. ...|.++|...|+.......+.-+ +.-..|... ..++..+. .+
T Consensus 16 ~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sSt-k~-- 78 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSST-KE-- 78 (311)
T ss_pred ceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEccC-CC--
Confidence 6899999999999888543 247888899998876555444322 334555533 44444321 00
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCc
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQK 187 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~ 187 (607)
...|-.+++ +.+ ++-+.. ...+..++.||-+.
T Consensus 79 ---------------------------------------------d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 79 ---------------------------------------------DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred ---------------------------------------------CCceEEEEeecCceEEEcCCCCceEEEEEecCCCC
Confidence 011222333 222 222222 23567899999876
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
.++-.+.+ ..|++||+...+..-+..+.. ..-.++.|.| |+|+...+..
T Consensus 114 ~FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~G---LifA~~~~~~- 162 (311)
T KOG1446|consen 114 TFLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEG---LIFALANGSE- 162 (311)
T ss_pred eEEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCC---cEEEEecCCC-
Confidence 66655432 378999998766555543211 1126777777 4455443222
Q ss_pred CccccCCCceEEeccCCCCCCCCce--eeee-cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPE--ILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~--~l~~-~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
.|.+.|..-++.+.-. .+.. ...+...+.|||||+.++..+. ...++++|.=. |....-+..
T Consensus 163 ---------~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~--G~~~~tfs~ 227 (311)
T KOG1446|consen 163 ---------LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFD--GTVKSTFSG 227 (311)
T ss_pred ---------eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccC--CcEeeeEee
Confidence 2222222112111111 1221 2235678999999997655442 23577787655 332222211
Q ss_pred cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 345 VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.... ...++ ...++|||+.|+-.+.
T Consensus 228 ~~~~-~~~~~--~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 228 YPNA-GNLPL--SATFTPDSKFVLSGSD 252 (311)
T ss_pred ccCC-CCcce--eEEECCCCcEEEEecC
Confidence 0000 00111 2678999997766553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0091 Score=58.07 Aligned_cols=197 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEe-cCCeEEEEEecCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws-pd~~~l~~~~~~~~~~~ 112 (607)
..|.|.+..+.|+|+-. ....|+.+++++++.+.+. .+. ...+... +++++++...
T Consensus 3 Egp~~d~~~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~-~~~------~~G~~~~~~~g~l~v~~~------- 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDI---------PGGRIYRVDPDTGEVEVID-LPG------PNGMAFDRPDGRLYVADS------- 59 (246)
T ss_dssp EEEEEETTTTEEEEEET---------TTTEEEEEETTTTEEEEEE-SSS------EEEEEEECTTSEEEEEET-------
T ss_pred cceEEECCCCEEEEEEc---------CCCEEEEEECCCCeEEEEe-cCC------CceEEEEccCCEEEEEEc-------
Confidence 36899997778888743 3579999999998776543 122 2345555 6777766531
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecC----CC-C--ceeeeeeCC
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG----TP-A--VYTAVEPSP 184 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt----~~-~--~~~~~~~Sp 184 (607)
..+.++++ +|+.+.+. .. . ...++.++|
T Consensus 60 --------------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 60 --------------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp --------------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred --------------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 01111233 33322221 11 1 345889999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
||+ |+++.......... ....||.++.+ ++++.+... -..+..+.||||++ .||+...
T Consensus 96 ~G~-ly~t~~~~~~~~~~----~~g~v~~~~~~-~~~~~~~~~-------------~~~pNGi~~s~dg~-~lyv~ds-- 153 (246)
T PF08450_consen 96 DGN-LYVTDSGGGGASGI----DPGSVYRIDPD-GKVTVVADG-------------LGFPNGIAFSPDGK-TLYVADS-- 153 (246)
T ss_dssp TS--EEEEEECCBCTTCG----GSEEEEEEETT-SEEEEEEEE-------------ESSEEEEEEETTSS-EEEEEET--
T ss_pred CCC-EEEEecCCCccccc----cccceEEECCC-CeEEEEecC-------------cccccceEECCcch-heeeccc--
Confidence 998 77775432111100 01469999998 666665430 01123599999998 3443321
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCc---eeeeecC---cccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLD---LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~l~~~~---~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
....++.++. ...+.+. +.+.... .....+++..+|..++... ...+|++++.++
T Consensus 154 ---------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~~~p~G 214 (246)
T PF08450_consen 154 ---------FNGRIWRFDL-DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVVFDPDG 214 (246)
T ss_dssp ---------TTTEEEEEEE-ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEEEETTS
T ss_pred ---------ccceeEEEec-cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEEECCCc
Confidence 1223444332 0111111 1121211 1245677878887655542 234899999886
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0051 Score=65.65 Aligned_cols=114 Identities=20% Similarity=0.254 Sum_probs=69.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc--e-eecccCCCccccccccceEEecCCeEEEEEecCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--A-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~ 108 (607)
.+....+||||+.++.... + ..+.++++.+++ . +.+..+ ...+..+.|+||+++++....+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~--~~i~~~~~~~~~~~~~~~l~~h-----~~~v~~~~fs~d~~~l~s~s~D- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------D--GLIRIWKLEGIKSNLLRELSGH-----TRGVSDVAFSPDGSYLLSGSDD- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------C--CcEEEeecccccchhhcccccc-----ccceeeeEECCCCcEEEEecCC-
Confidence 5777899999999888764 2 344555555555 2 222211 1236799999999876654211
Q ss_pred CCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC--CC-CeeecC-CCCceeeeeeCC
Q 007338 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFG-TPAVYTAVEPSP 184 (607)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g-~~~~lt-~~~~~~~~~~Sp 184 (607)
..|.++++ .+ ..+.|. ....+..+.|+|
T Consensus 225 ------------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 225 ------------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 12333333 22 233443 234667999999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
+|+.|+..+. ...+.+||+++++..
T Consensus 257 ~g~~i~Sgs~-------------D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 257 DGNLLVSGSD-------------DGTVRIWDVRTGECV 281 (456)
T ss_pred CCCEEEEecC-------------CCcEEEEeccCCeEE
Confidence 9966655543 237899999886433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0047 Score=57.66 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=38.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...+..|||||+++++... ...|-.+|..+-++..-- + .+.+...+.|..++.++|.+
T Consensus 108 eni~i~wsp~g~~~~~~~k----------dD~it~id~r~~~~~~~~--~---~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGNK----------DDRITFIDARTYKIVNEE--Q---FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred cceEEEEcCCCCEEEEecC----------cccEEEEEecccceeehh--c---ccceeeeeeecCCCCEEEEe
Confidence 5678999999999999753 356777788765543221 1 11124578899778887765
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=69.47 Aligned_cols=212 Identities=17% Similarity=0.238 Sum_probs=124.2
Q ss_pred EeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccc
Q 007338 10 HRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (607)
Q Consensus 10 ~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~ 89 (607)
.++-|+.++++.+.+.+..+ .+...+||||.+.|+-.+. +....||-++..+. ..+.... +..+
T Consensus 433 ~~~~D~~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t~s~--~V~y~GH----~~PV 496 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDTWSC--LVIYKGH----LAPV 496 (707)
T ss_pred hhhccccCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeeccccee--EEEecCC----Ccce
Confidence 46667888999999986543 5899999999998766543 56677776665432 2222111 1123
Q ss_pred cceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCee
Q 007338 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK 169 (607)
Q Consensus 90 ~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 169 (607)
-..+|+|-|-+++....+ ...+||..+-....+
T Consensus 497 wdV~F~P~GyYFatas~D-----------------------------------------------~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATASHD-----------------------------------------------QTARLWSTDHNKPLR 529 (707)
T ss_pred eeEEecCCceEEEecCCC-----------------------------------------------ceeeeeecccCCchh
Confidence 456777766554442110 123455444322222
Q ss_pred ecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC-CCcc
Q 007338 170 DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSI 247 (607)
Q Consensus 170 ~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 247 (607)
-+... ..+.-+.|.|++.|++--+. ...+.+||+.+|...++.. + ..+ +..+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSs-------------D~tVRlWDv~~G~~VRiF~------------G-H~~~V~al 583 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSS-------------DRTVRLWDVSTGNSVRIFT------------G-HKGPVTAL 583 (707)
T ss_pred hhcccccccceEEECCcccccccCCC-------------CceEEEEEcCCCcEEEEec------------C-CCCceEEE
Confidence 22111 23344789999999875533 2368899998776666542 1 122 2359
Q ss_pred eeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 248 ~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
.+||+|+ |+..- .....+.+||. ..|.....+..+...+..+.||.||..|+.... +..-+||
T Consensus 584 ~~Sp~Gr----~LaSg---------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lW 646 (707)
T KOG0263|consen 584 AFSPCGR----YLASG---------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLW 646 (707)
T ss_pred EEcCCCc----eEeec---------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEE
Confidence 9999998 33221 12245677774 333233344455566788999999998777542 2334666
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.4e-05 Score=74.37 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=44.4
Q ss_pred chhHHHhccCeEEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 546 TSSLIFLARRFAVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 546 ~~~q~la~~GY~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+..|+||++||+|+.++.+++.|+|.. ...+++...++|++++|++|++++.+|.+++.
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~ 67 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIG 67 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEE
Confidence 457999999999999333223334433 45567778899999999999999999999863
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.014 Score=60.09 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=60.6
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
+-|+|+..+ +...|.++|.++.+...-...... ......++||++++|....
T Consensus 5 ~~l~~V~~~--------~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~r---------------- 56 (369)
T PF02239_consen 5 GNLFYVVER--------GSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANR---------------- 56 (369)
T ss_dssp GGEEEEEEG--------GGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEET----------------
T ss_pred ccEEEEEec--------CCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcC----------------
Confidence 345666654 457999999999876433221111 1234678899998777421
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
.+.|-++|+ +++ ..++..+.....+++||||++|+.+...
T Consensus 57 ---------------------------------dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----- 98 (369)
T PF02239_consen 57 ---------------------------------DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE----- 98 (369)
T ss_dssp ---------------------------------TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE-----
T ss_pred ---------------------------------CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC-----
Confidence 124556777 553 4445444445689999999999877543
Q ss_pred ccCCCcCCccEEEEeCCCCe
Q 007338 201 KVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~ 220 (607)
+..+.++|.++.+
T Consensus 99 -------~~~v~v~D~~tle 111 (369)
T PF02239_consen 99 -------PGTVSVIDAETLE 111 (369)
T ss_dssp -------TTEEEEEETTT--
T ss_pred -------CCceeEecccccc
Confidence 3478889987754
|
... |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0033 Score=69.44 Aligned_cols=249 Identities=17% Similarity=0.191 Sum_probs=127.0
Q ss_pred eeEEEeccCCCCCCCeeee-ecCCCCCcccceEEccCCCEEEE-EeecCcccccCCCceeEEEEECCCCce--eecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEV-HGYPDGAKINFVSWSPDGKRIAF-SVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l-t~~~~~~~~~~~~~SPDG~~laf-~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~ 81 (607)
+|.+-|.. ++.++.| +. ....+..|.|||||++||| ++-+.- .++..||+.++.+... ..|- .+
T Consensus 330 ~L~~~D~d----G~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~e~~-----~g~s~vYv~~L~t~~~~~vkl~-ve 397 (912)
T TIGR02171 330 NLAYIDYT----KGASRAVEIE--DTISVYHPDISPDGKKVAFCTGIEGL-----PGKSSVYVRNLNASGSGLVKLP-VE 397 (912)
T ss_pred eEEEEecC----CCCceEEEec--CCCceecCcCCCCCCEEEEEEeecCC-----CCCceEEEEehhccCCCceEee-cc
Confidence 68888875 7788877 43 3446889999999999999 543210 2578899999986433 3331 11
Q ss_pred CccccccccceEEe--cC-CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccce
Q 007338 82 DICLNAVFGSFVWV--NN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (607)
Q Consensus 82 ~~~~~~~~~~~~Ws--pd-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (607)
. ..=++|- .+ ...|++.++.+.. .|+.-| ....
T Consensus 398 ~------aaiprwrv~e~gdt~ivyv~~a~nn-----------------------------------~d~~~~---~~~s 433 (912)
T TIGR02171 398 N------AAIPRWRVLENGDTVIVYVSDASNN-----------------------------------KDDATF---AAYS 433 (912)
T ss_pred c------ccccceEecCCCCeEEEEEcCCCCC-----------------------------------cchhhh---hhcc
Confidence 1 2235664 55 4555554332110 001111 1234
Q ss_pred EEEEeC-CC---CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 159 LVLGSL-DG---TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 159 l~~~~~-~g---~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
-|.+.. +| +++.|-.+.+...+ |.| +.++++..+.- ...+.--++..++-..
T Consensus 434 tw~v~f~~gkfg~p~kl~dga~hggv--s~~-~~lavtga~ll----------r~~~~~~~~~~~~~~v----------- 489 (912)
T TIGR02171 434 TWQVPFANGKFGTPKKLFDGAYHGGV--SED-LNLAVSGARLL----------RAHVANEDVDNGKDDV----------- 489 (912)
T ss_pred eEEEEecCCCCCCchhhhcccccccc--ccC-CceeeehhhHh----------hhhhcccccccCccce-----------
Confidence 566666 44 68888766544333 333 45665543210 0000000111121111
Q ss_pred cccccccCCCCcceeecCCCceEEEEEeecCCCCc-cccCC--CceEEeccCCCCCCCCceeeeec-CcccceeeEcCC-
Q 007338 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN-VEVSP--RDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDD- 309 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~g~~~~~l~~~-~~~~~~~~ws~D- 309 (607)
+|++ .+.=+.+.+.||.+.-.|+.+-+..+.. +-... +.++++.| .+|...+.+... ++.+....|-.+
T Consensus 490 -wyn~--eqacn~sl~~d~~~rt~fldfgg~tg~~fvg~~y~~he~~lvad---s~gklv~~v~ap~gytfdh~ew~~~~ 563 (912)
T TIGR02171 490 -WYNG--EQACNASLAKDGSKRTLFLDFGGSTGQAFVGQKYGVHERLLVAD---SKGKLVRAVAAPAGYTFDHTEWVTGR 563 (912)
T ss_pred -eecc--hhccchhhhccCCcceEEEecCCccchhhccccccceeEEEEec---CCCchhhhccCCCCccccchhhhcCC
Confidence 1110 1112367778888776676554322211 11222 23344444 344222333222 234445557543
Q ss_pred -CcEEEEEEeccccceEEEEEcCCCCCCCceEee
Q 007338 310 -SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 310 -g~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~ 342 (607)
+.+++.-.+.+..+.+|.+++++. ++...|.
T Consensus 564 ~~~~vatl~n~~g~h~ki~lv~~~~--~~i~~l~ 595 (912)
T TIGR02171 564 SNLAVATLTNVNGAHKKIALINLSD--SKVTELV 595 (912)
T ss_pred CceEEEEeecCCCccceEEEEEcCC--CceEEee
Confidence 345666666666678999999988 4556654
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.037 Score=59.32 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=67.3
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCce--------eecccCCCccccccccceEEecCC-eEE
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--------KPLFESPDICLNAVFGSFVWVNNS-TLL 101 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--------~~lt~~~~~~~~~~~~~~~Wspd~-~~l 101 (607)
.+....|+| |++.||..+. + ..|.+||+.++.. ..+..+. ..+..+.|+|++ .++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~--------D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE--------D--GTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC--------C--CEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 588999999 8887766543 2 4677778765421 2222111 125678999874 565
Q ss_pred EEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCcee
Q 007338 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYT 178 (607)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~ 178 (607)
+.... ...|.++|+ +++ ...+.. ...+.
T Consensus 142 aSgs~-------------------------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAGA-------------------------------------------------DMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEeC-------------------------------------------------CCEEEEEECCCCeEEEEEcCCCCceE
Confidence 55310 123344455 343 223332 23567
Q ss_pred eeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.++|+|||+.|+..+.+ ..|.+||+.+++
T Consensus 173 sla~spdG~lLatgs~D-------------g~IrIwD~rsg~ 201 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGT 201 (493)
T ss_pred EEEEECCCCEEEEecCC-------------CEEEEEECCCCc
Confidence 89999999988766432 368899987663
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.072 Score=56.25 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=34.8
Q ss_pred ceEEEEeC-CCCeee--cCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 157 AQLVLGSL-DGTAKD--FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 157 ~~l~~~~~-~g~~~~--lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..|+++|+ +|+... +.. .....+.|++||+.++|+......... ....+..||++.+.+.
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-
T ss_pred EEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCC
Confidence 57888999 674322 111 112249999999999999865421100 0112457787777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=72.22 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=65.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCC----C---cCCCCCCchhHHHhc
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP----N---EFSGMTPTSSLIFLA 553 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p----~---~~~~~~~~~~q~la~ 553 (607)
..|.+.|...++..++++|+.|.+. +.|.|+||+.|+. |.+-..+.|.+ . .+..+....-..||.
T Consensus 87 ~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgH----g~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 87 TREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGH----GGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp EEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--T----T--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred EEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCC----CCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 7889999999999999999999875 3477999998853 22221122211 1 111111222358999
Q ss_pred cCeEEEeCCCCceecc-CC-C-------------------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 554 RRFAVLAGPSIPIIGE-GL-W-------------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 554 ~GY~Vl~~~~~~~~g~-g~-~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+||+|+. ++..-.|+ |. + .++.|+.-+.-|.|.+++||-.+.-||.+++
T Consensus 159 ~GYVvla-~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RI 228 (390)
T PF12715_consen 159 RGYVVLA-PDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRI 228 (390)
T ss_dssp TTSEEEE-E--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEE
T ss_pred CCCEEEE-EccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccce
Confidence 9999997 44433331 00 0 2333444445678999999999999999986
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.088 Score=59.06 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=37.5
Q ss_pred cceEEEEeC-CCC--eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 156 TAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 156 ~~~l~~~~~-~g~--~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..+|+++++ +|+ +..+.... ..+.|++|++.|+|+.+.+. . . .+.++|++++.++
T Consensus 152 ~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~-~-~-----~~~~v~~h~lgt~ 209 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPV-T-L-----LPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCC-C-C-----CCCEEEEEECCCC
Confidence 358888998 675 34443222 35899999999999987421 0 0 1358999998876
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.1e-05 Score=73.72 Aligned_cols=99 Identities=25% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEEeCCCCceecc
Q 007338 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGPSIPIIGE 569 (607)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl~~~~~~~~g~ 569 (607)
||.+|.+.||+| +.+.++ |+|+||..+| |.-.. +.. .......... .....|+.+||+|+. .+. +|.
T Consensus 1 DGv~L~adv~~P-~~~~~~--~~P~il~~tp--Y~~~~---~~~-~~~~~~~~~~~~~~~~~~~~GY~vV~-~D~--RG~ 68 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGG--PFPVILTRTP--YGKGD---QTA-SDLAGANPGPPSARRPFAERGYAVVV-QDV--RGT 68 (272)
T ss_dssp TS-EEEEEEEEE---TTSS--SEEEEEEEES--STCTC----HH-HHHHTTCHHSHGGGHHHHHTT-EEEE-EE---TTS
T ss_pred CCCEEEEEEEec-CCCCCC--cccEEEEccC--cCCCC---Ccc-cchhhhhcccchhHHHHHhCCCEEEE-ECC--ccc
Confidence 899999999999 545444 5699998754 11000 000 0000000000 001249999999997 332 332
Q ss_pred CC-CCchhh-HHHHhhcHHHHHHHHHHhcccccc
Q 007338 570 GL-WSNWFQ-VQRLLLKKLFDVEWLIQAELLLED 601 (607)
Q Consensus 570 g~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 601 (607)
|. ++.... ..+...|..++|+||..+.+-++.
T Consensus 69 g~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~G~ 102 (272)
T PF02129_consen 69 GGSEGEFDPMSPNEAQDGYDTIEWIAAQPWSNGK 102 (272)
T ss_dssp TTS-S-B-TTSHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCCccccCChhHHHHHHHHHHHHHhCCCCCCe
Confidence 22 222222 577899999999999999886654
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=73.52 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=63.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..|.++++..||.+|+|+|++|.. + + |.|+||..|+. ++... .......+.|+++||+|+.
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~-~--~--~~P~Vli~gG~------------~~~~~--~~~~~~~~~La~~Gy~vl~ 227 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKG-D--G--PFPTVLVCGGL------------DSLQT--DYYRLFRDYLAPRGIAMLT 227 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCC-C--C--CccEEEEeCCc------------ccchh--hhHHHHHHHHHhCCCEEEE
Confidence 678999999899999999999973 2 3 34888864421 11110 0011235689999999998
Q ss_pred CCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.|..|. ...............+.+++|.+...||.+++
T Consensus 228 -~D~pG~G~--s~~~~~~~d~~~~~~avld~l~~~~~vd~~ri 267 (414)
T PRK05077 228 -IDMPSVGF--SSKWKLTQDSSLLHQAVLNALPNVPWVDHTRV 267 (414)
T ss_pred -ECCCCCCC--CCCCCccccHHHHHHHHHHHHHhCcccCcccE
Confidence 77765443 21111111111222577899999988888765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.061 Score=50.12 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=49.9
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.+++. .+++ ++....++||++.||... ...|-++|+.++++.++...+. .++.+..+.|--||+.
T Consensus 33 ~rTiq-h~ds-qVNrLeiTpdk~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~--h~kNVtaVgF~~dgrW 97 (311)
T KOG0315|consen 33 SRTIQ-HPDS-QVNRLEITPDKKDLAAAG-----------NQHVRLYDLNSNNPNPVATFEG--HTKNVTAVGFQCDGRW 97 (311)
T ss_pred EEEEe-cCcc-ceeeEEEcCCcchhhhcc-----------CCeeEEEEccCCCCCceeEEec--cCCceEEEEEeecCeE
Confidence 34443 5655 799999999999998754 4688999999998866643322 2233667788888998
Q ss_pred EEEE
Q 007338 101 LIFT 104 (607)
Q Consensus 101 l~~~ 104 (607)
.+..
T Consensus 98 MyTg 101 (311)
T KOG0315|consen 98 MYTG 101 (311)
T ss_pred EEec
Confidence 8864
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00028 Score=69.51 Aligned_cols=96 Identities=14% Similarity=0.009 Sum_probs=59.2
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
+......+.||.+|.||+..|.+-+. + |.|+||..|+- ++...+ +.....+|+++||+|+.
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~~-~--~~~~vIi~HGf------------~~~~~~---~~~~A~~La~~G~~vLr- 69 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENSP-K--KNNTILIASGF------------ARRMDH---FAGLAEYLSSNGFHVIR- 69 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccCC-C--CCCEEEEeCCC------------CCChHH---HHHHHHHHHHCCCEEEE-
Confidence 33445677899999999999985332 3 33888877742 222111 11235799999999998
Q ss_pred CCCce-ec-cCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 562 PSIPI-IG-EGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 562 ~~~~~-~g-~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
.+... .| +++...+.-......|+.++|+||-+++
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~ 106 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG 106 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC
Confidence 65422 23 2222111111223789999999998875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.1 Score=56.53 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=24.6
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
..+..++|+|||+.|+....+ ..|.+||+.+++
T Consensus 168 ~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQE 200 (568)
T ss_pred CcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCc
Confidence 456789999999988765421 368899998764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=70.86 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=44.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+.+..||||+.++|-.+. .+.+.+++..+.+...++...... +.++.|.|-|+++...
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~----------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASq 189 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSL----------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQ 189 (942)
T ss_pred ccceeccCCCccEEEEecc----------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeee
Confidence 5899999999998877653 367888899888665555444432 6789999999998874
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.025 Score=55.09 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred CCCeeeeecCCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEe
Q 007338 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (607)
++...++...... .....|.+||||+.+||+... ++...|++....+. ...+.... . +..+.|+
T Consensus 9 ~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~-------~~~~~L~~~~~~~~-~~~~~~g~--~----l~~PS~d 74 (253)
T PF10647_consen 9 GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEG-------DGGRSLYVGPAGGP-VRPVLTGG--S----LTRPSWD 74 (253)
T ss_pred CCceeECCCCcCcCCccccceEECCCCCeEEEEEEc-------CCCCEEEEEcCCCc-ceeeccCC--c----ccccccc
Confidence 5566677654332 258899999999999999832 46789999876544 44432111 1 6789999
Q ss_pred cCCeEEEEE
Q 007338 96 NNSTLLIFT 104 (607)
Q Consensus 96 pd~~~l~~~ 104 (607)
+++.+.++.
T Consensus 75 ~~g~~W~v~ 83 (253)
T PF10647_consen 75 PDGWVWTVD 83 (253)
T ss_pred CCCCEEEEE
Confidence 998877663
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00045 Score=72.92 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=67.5
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchh--HHHhccCeEEE
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARRFAVL 559 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~--q~la~~GY~Vl 559 (607)
...+.++-+||++|..-||.|++- .|+|||+.-.-.||. .. .+. +......-. ++||++||+|+
T Consensus 19 ~~~v~V~MRDGvrL~~dIy~Pa~~-----g~~Pvll~~~~~Py~------k~-~~~--~~~~~~~~p~~~~~aa~GYavV 84 (563)
T COG2936 19 ERDVMVPMRDGVRLAADIYRPAGA-----GPLPVLLSRTRLPYR------KR-NGT--FGPQLSALPQPAWFAAQGYAVV 84 (563)
T ss_pred eeeeeEEecCCeEEEEEEEccCCC-----CCCceeEEeeccccc------cc-ccc--CcchhhcccccceeecCceEEE
Confidence 445777889999999999999963 245988875411111 11 011 111111112 48999999999
Q ss_pred eCCCCceecc-CCCC-chhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 560 AGPSIPIIGE-GLWS-NWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~-g~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
. .++ +|. ++++ ..-+..+...|.-+.|+||.++.+-+++--|
T Consensus 85 ~-qDv--RG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsNG~Vgm 128 (563)
T COG2936 85 N-QDV--RGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSNGNVGM 128 (563)
T ss_pred E-ecc--cccccCCcccceeccccccchhHHHHHHHhCCccCCeeee
Confidence 7 544 443 3331 2222236889999999999999998876554
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00037 Score=76.28 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=60.4
Q ss_pred ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCc-CCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 488 ~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
+..||.+|.+.++.|.+ . + +.|+||+.||- +.... .........++|+++||+|+. .+.
T Consensus 2 ~~~DG~~L~~~~~~P~~-~--~--~~P~Il~~~gy------------g~~~~~~~~~~~~~~~~l~~~Gy~vv~-~D~-- 61 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-G--G--PVPVILSRTPY------------GKDAGLRWGLDKTEPAWFVAQGYAVVI-QDT-- 61 (550)
T ss_pred cCCCCCEEEEEEEecCC-C--C--CCCEEEEecCC------------CCchhhccccccccHHHHHhCCcEEEE-Eec--
Confidence 56899999999999975 1 2 45999998752 10000 001111235789999999998 554
Q ss_pred eccCCC-CchhhH-HHHhhcHHHHHHHHHHhccccc
Q 007338 567 IGEGLW-SNWFQV-QRLLLKKLFDVEWLIQAELLLE 600 (607)
Q Consensus 567 ~g~g~~-~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 600 (607)
+|.|.. +..... .....|+.+.|+||..+.+.++
T Consensus 62 RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~~ 97 (550)
T TIGR00976 62 RGRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCDG 97 (550)
T ss_pred cccccCCCceEecCcccchHHHHHHHHHHhCCCCCC
Confidence 343332 111111 4678899999999999988764
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.056 Score=55.96 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=81.8
Q ss_pred eeccceEEEEeCCCC--eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCC
Q 007338 153 YYTTAQLVLGSLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (607)
Q Consensus 153 ~~~~~~l~~~~~~g~--~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (607)
||+...||.++.+|. ..+|...+-+.++.|||+|+.++++..- + +..+-++|+++.-+-.+.
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf-----M------PAkvtifnlr~~~v~df~----- 310 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF-----M------PAKVTIFNLRGKPVFDFP----- 310 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec-----c------cceEEEEcCCCCEeEeCC-----
Confidence 456788999998774 5567766777899999999988777431 1 457888898887554442
Q ss_pred CCCCcccccccCCCCc-ceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcC
Q 007338 231 EDIPVCYNSVREGMRS-ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCD 308 (607)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~ 308 (607)
.|+|+ +-|+|.|.. +++..+ ++ ....+-+||+ . ..+.+.... ..-+-..|+|
T Consensus 311 -----------egpRN~~~fnp~g~i-i~lAGF-GN--------L~G~mEvwDv--~---n~K~i~~~~a~~tt~~eW~P 364 (566)
T KOG2315|consen 311 -----------EGPRNTAFFNPHGNI-ILLAGF-GN--------LPGDMEVWDV--P---NRKLIAKFKAANTTVFEWSP 364 (566)
T ss_pred -----------CCCccceEECCCCCE-EEEeec-CC--------CCCceEEEec--c---chhhccccccCCceEEEEcC
Confidence 35565 889999983 333322 11 1222333443 0 112233322 2244578999
Q ss_pred CCcEEEEEEec----cccceEEEEE
Q 007338 309 DSLALVNETWY----KTSQTRTWLV 329 (607)
Q Consensus 309 Dg~~l~~~~~~----~~~~~~l~~~ 329 (607)
||..|+..+-. .+.-.+||.+
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEe
Confidence 99987655311 1233466655
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.23 Score=51.56 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=46.5
Q ss_pred cccceEEccCCCEEEEEeecCcc-cccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~-~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||.-++|+--+..... ......+.+|.++|+++|...+-....... .....-|.||-|++++..+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEe
Confidence 67888999999998765543110 001134578999999999876554321111 0113468999999987765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.11 Score=50.25 Aligned_cols=152 Identities=15% Similarity=0.269 Sum_probs=77.0
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceE
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (607)
.++-+.-++++|.-.+. .++|.+|+++|.....+..+ ......-+.||||+
T Consensus 191 i~iGiA~~~k~imsas~-------------dt~i~lw~lkGq~L~~idtn-------------q~~n~~aavSP~GR--- 241 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASL-------------DTKICLWDLKGQLLQSIDTN-------------QSSNYDAAVSPDGR--- 241 (420)
T ss_pred EEEeecCCceEEEEecC-------------CCcEEEEecCCceeeeeccc-------------cccccceeeCCCCc---
Confidence 35666666777766543 24789999997766555432 12223467899998
Q ss_pred EEEEeecCCCCccccCCCceEEeccCCCCCCC--Cce---eeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCC
Q 007338 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~---~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~ 332 (607)
|+..- +-.+ .+.....+|. .+|. +.. .|......+..++||+++.+++..+ +++.-+||-.|..
T Consensus 242 -Fia~~-gFTp--DVkVwE~~f~-----kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriwdtdVr 310 (420)
T KOG2096|consen 242 -FIAVS-GFTP--DVKVWEPIFT-----KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIWDTDVR 310 (420)
T ss_pred -EEEEe-cCCC--CceEEEEEec-----cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEeeccce
Confidence 33221 1111 1111112222 1220 111 2333444567789999988766653 2344578766653
Q ss_pred CCC-CCceEeeec-cc-cccccCCCCCCeeeCCCCCEEEEEe
Q 007338 333 SKD-VAPRVLFDR-VF-ENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 333 ~~~-~~~~~l~~~-~~-~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
=.. +.++.|-.+ .+ ...-+.| ..+..+|.|+.++...
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p--~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEP--VRLELSPSGDSLAVSF 350 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCc--eEEEeCCCCcEEEeec
Confidence 211 234444111 11 1111111 1377899999776654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0061 Score=60.61 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=42.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.++..+|-|+|++|+-.+- +....|| |+.+++...+..... +.+..++|.+||.++..
T Consensus 263 RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~QEGHs----~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQEGHS----KGVFSIAFQPDGSLAAT 320 (459)
T ss_pred hheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhhcccc----cccceeEecCCCceeec
Confidence 6899999999999987663 4445555 898887654433222 23778999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.019 Score=62.69 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCee-eeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec
Q 007338 18 LGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
.+++. .|+.|+- .++..+++-+|+++|+.+. ...|-+++.........+...+. .+..+.+.|
T Consensus 85 s~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p 148 (933)
T KOG1274|consen 85 SGEEDTILARFTL--PIRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDP 148 (933)
T ss_pred CCCccceeeeeec--cceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccCC----ceeeeeEcC
Confidence 45444 3443332 5789999999999999864 36777778776654444433332 366888889
Q ss_pred CCeEEEEE
Q 007338 97 NSTLLIFT 104 (607)
Q Consensus 97 d~~~l~~~ 104 (607)
.+.+|+.+
T Consensus 149 ~~~fLAvs 156 (933)
T KOG1274|consen 149 KGNFLAVS 156 (933)
T ss_pred CCCEEEEE
Confidence 99988875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=62.65 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=78.8
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.-|+.| .|...+.+..+.-|.|.. ++... .+..+|++|++++|+..-+....+++ ++.+.++|++.
T Consensus 426 NfRTft-~P~p~QfscvavD~sGel-V~AG~--------~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~ 491 (893)
T KOG0291|consen 426 NFRTFT-SPEPIQFSCVAVDPSGEL-VCAGA--------QDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGS 491 (893)
T ss_pred eeeeec-CCCceeeeEEEEcCCCCE-EEeec--------cceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccC
Confidence 455666 456557777888888975 45443 34689999999999987666555554 77888999988
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE-EeCCCCeeecCCCCcee
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL-GSLDGTAKDFGTPAVYT 178 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~lt~~~~~~ 178 (607)
+|+..+- |. +.++|- ++-.|+++.|.....+.
T Consensus 492 ~LaS~SW----------------------------------------Dk-------TVRiW~if~s~~~vEtl~i~sdvl 524 (893)
T KOG0291|consen 492 LLASGSW----------------------------------------DK-------TVRIWDIFSSSGTVETLEIRSDVL 524 (893)
T ss_pred eEEeccc----------------------------------------cc-------eEEEEEeeccCceeeeEeecccee
Confidence 8776421 11 234442 22245666665555567
Q ss_pred eeeeCCCCceEEEEEcc
Q 007338 179 AVEPSPDQKYVLITSMH 195 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~ 195 (607)
.++++|||+.|++++.+
T Consensus 525 ~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLD 541 (893)
T ss_pred EEEEcCCCCeEEEEEec
Confidence 89999999999999764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.16 Score=49.01 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=47.3
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCe
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
+..++..-+.+....-+||+-|.+||.-.. ...|.++|..+-.+ +.++.+-. . +..+.||+||+
T Consensus 14 PEel~~tld~~~a~~~~Fs~~G~~lAvGc~----------nG~vvI~D~~T~~iar~lsaH~~-p----i~sl~WS~dgr 78 (405)
T KOG1273|consen 14 PEELTHTLDNPLAECCQFSRWGDYLAVGCA----------NGRVVIYDFDTFRIARMLSAHVR-P----ITSLCWSRDGR 78 (405)
T ss_pred hHhhceeccCCccceEEeccCcceeeeecc----------CCcEEEEEccccchhhhhhcccc-c----eeEEEecCCCC
Confidence 334443333334678899999999999875 25677888887544 45543332 1 67899999999
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
.|+.+
T Consensus 79 ~Llts 83 (405)
T KOG1273|consen 79 KLLTS 83 (405)
T ss_pred Eeeee
Confidence 88875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.084 Score=50.37 Aligned_cols=192 Identities=15% Similarity=0.195 Sum_probs=110.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-d~~~l~~~~~~~~~ 110 (607)
+.+.-+|-+|+..| -.+ +....-++|+++|+..+......+. +-.+..+| +++.++...-+
T Consensus 147 ylScC~f~dD~~il-T~S----------GD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~ntFvSg~cD--- 208 (343)
T KOG0286|consen 147 YLSCCRFLDDNHIL-TGS----------GDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGNTFVSGGCD--- 208 (343)
T ss_pred eeEEEEEcCCCceE-ecC----------CCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCCeEEecccc---
Confidence 68888999887543 332 2345566699999876665433332 45677777 56665542100
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-cC-CCCceeeeeeCCCCc
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG-TPAVYTAVEPSPDQK 187 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-lt-~~~~~~~~~~SpDg~ 187 (607)
.... ++|+ ++..+| +. ....+..+.|-|+|.
T Consensus 209 --------------------------------------------~~ak--lWD~R~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 209 --------------------------------------------KSAK--LWDVRSGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred --------------------------------------------ccee--eeeccCcceeEeecccccccceEEEccCCC
Confidence 0111 2233 343222 32 233567899999998
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
.++--+.+ ....++|+.....-.+.. .+....++.++.+|..|+ |.|....+.
T Consensus 243 afatGSDD-------------~tcRlyDlRaD~~~a~ys----------~~~~~~gitSv~FS~SGR--lLfagy~d~-- 295 (343)
T KOG0286|consen 243 AFATGSDD-------------ATCRLYDLRADQELAVYS----------HDSIICGITSVAFSKSGR--LLFAGYDDF-- 295 (343)
T ss_pred eeeecCCC-------------ceeEEEeecCCcEEeeec----------cCcccCCceeEEEccccc--EEEeeecCC--
Confidence 77655432 245566776542222211 112234455688998887 555433222
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
...+||. ..++..-.|..++.+++.+..+|||.++...+|.. .-+||
T Consensus 296 ---------~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs--~lriW 342 (343)
T KOG0286|consen 296 ---------TCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS--TLRIW 342 (343)
T ss_pred ---------ceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhH--heeec
Confidence 2344453 44434445777888999999999999999887742 34555
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.25 Score=48.67 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=75.7
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.+-.+++.-+ .+....||-||.+||-- +-...|.++..++|..+.....+-. .+..+.|.|-+.
T Consensus 98 ~~~eltgHKD--SVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~ 161 (399)
T KOG0296|consen 98 FAGELTGHKD--SVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAH 161 (399)
T ss_pred ceeEecCCCC--ceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC----ceEEEEeccccc
Confidence 3444554333 58999999999887654 2345777777877766543321111 156778888777
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC--Cc
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AV 176 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~--~~ 176 (607)
+++.-. ....+|.+.+ ++...++..+ ..
T Consensus 162 illAG~-------------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 162 ILLAGS-------------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred EEEeec-------------------------------------------------CCCcEEEEECCCcceeeEecCCCCC
Confidence 666521 0235566666 3333333222 23
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
...-.+.||||+|+.... ...|.+|+++++.+
T Consensus 193 ct~G~f~pdGKr~~tgy~-------------dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYD-------------DGTIIVWNPKTGQP 224 (399)
T ss_pred cccccccCCCceEEEEec-------------CceEEEEecCCCce
Confidence 456789999999987743 23788999998843
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.27 Score=47.03 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=45.3
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCCe
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.|.|.+... .+....||+|+++|+-.++ + ..|.++|.-+.. ...++ .+. .-+-.++++|.+.
T Consensus 48 rr~LkGH~~--Ki~~~~ws~Dsr~ivSaSq--------D--GklIvWDs~TtnK~haip-l~s----~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLN--KIYAMDWSTDSRRIVSASQ--------D--GKLIVWDSFTTNKVHAIP-LPS----SWVMTCAYSPSGN 110 (343)
T ss_pred EEEeccccc--ceeeeEecCCcCeEEeecc--------C--CeEEEEEcccccceeEEe-cCc----eeEEEEEECCCCC
Confidence 355554333 5899999999999988775 2 467888988754 44442 222 1255889999988
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
++...
T Consensus 111 ~VAcG 115 (343)
T KOG0286|consen 111 FVACG 115 (343)
T ss_pred eEEec
Confidence 87653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.068 Score=51.55 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC
Q 007338 15 DDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA 69 (607)
Q Consensus 15 ~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~ 69 (607)
||+..+.|-+..-.+-...+..+|+||-+.+++...+ ++.|+++-+
T Consensus 117 DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~---------g~~l~vyk~ 162 (420)
T KOG2096|consen 117 DFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR---------GNKLCVYKL 162 (420)
T ss_pred hhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc---------CCEEEEEEe
Confidence 5666666555532222256788999999999998864 356777654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.038 Score=56.58 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
+.-.+...+|||.|..|+.++. ..+.-++|.+|-+....
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg----------~aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSG----------SAQAKLLDRDGFEIVEF 251 (641)
T ss_pred cccccceeeecCCCCeEEEEec----------CcceeEEccCCceeeee
Confidence 4446899999999999988863 46778888887665444
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.052 Score=57.97 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=50.7
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (607)
|.|.++.. .+...+.+.+++. .+....|+|+|+.|+..+ ....+.++|+.+|+..+........
T Consensus 227 iriwd~~~--~~~~~~~l~gH~~--~v~~~~f~p~g~~i~Sgs----------~D~tvriWd~~~~~~~~~l~~hs~~-- 290 (456)
T KOG0266|consen 227 LRIWDLKD--DGRNLKTLKGHST--YVTSVAFSPDGNLLVSGS----------DDGTVRIWDVRTGECVRKLKGHSDG-- 290 (456)
T ss_pred EEEeeccC--CCeEEEEecCCCC--ceEEEEecCCCCEEEEec----------CCCcEEEEeccCCeEEEeeeccCCc--
Confidence 45566631 1234455554433 589999999996555443 2357888899988875443332222
Q ss_pred ccccceEEecCCeEEEEE
Q 007338 87 AVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 87 ~~~~~~~Wspd~~~l~~~ 104 (607)
+..+.+++|++++...
T Consensus 291 --is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 291 --ISGLAFSPDGNLLVSA 306 (456)
T ss_pred --eEEEEECCCCCEEEEc
Confidence 6778889998887764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0032 Score=61.70 Aligned_cols=59 Identities=32% Similarity=0.396 Sum_probs=40.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
-+....|||||++||-.+- +. .+-+++-.+|+-....+..- +.+-.++||.|.|+++..
T Consensus 369 lVn~V~fSPd~r~IASaSF--------Dk--SVkLW~g~tGk~lasfRGHv----~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASF--------DK--SVKLWDGRTGKFLASFRGHV----AAVYQVAWSADSRLLVSG 427 (480)
T ss_pred heeeEEECCCccEEEEeec--------cc--ceeeeeCCCcchhhhhhhcc----ceeEEEEeccCccEEEEc
Confidence 4889999999999988764 33 45555777887432222111 113478999999998874
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0027 Score=64.78 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=63.1
Q ss_pred ccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCc-hhHHHhccC
Q 007338 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFLARR 555 (607)
Q Consensus 477 ~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~-~~q~la~~G 555 (607)
.+.++.+...|++.||.+|+++.+.|.+-.+ +.|+||++||- ++...| .+. ..+.|+++|
T Consensus 27 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~----~~~~VvllHG~------------~~~~~~---~~~~~~~~L~~~G 87 (330)
T PLN02298 27 LKGIKGSKSFFTSPRGLSLFTRSWLPSSSSP----PRALIFMVHGY------------GNDISW---TFQSTAIFLAQMG 87 (330)
T ss_pred ccCCccccceEEcCCCCEEEEEEEecCCCCC----CceEEEEEcCC------------CCCcce---ehhHHHHHHHhCC
Confidence 3445667778999999999999998875221 33889998852 111111 111 245788999
Q ss_pred eEEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 556 FAVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 556 Y~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
|.|+. .+.+-+| .. ........+.+|+.+.+++|..+
T Consensus 88 y~V~~-~D~rGhG--~S~~~~~~~~~~~~~~~D~~~~i~~l~~~ 128 (330)
T PLN02298 88 FACFA-LDLEGHG--RSEGLRAYVPNVDLVVEDCLSFFNSVKQR 128 (330)
T ss_pred CEEEE-ecCCCCC--CCCCccccCCCHHHHHHHHHHHHHHHHhc
Confidence 99998 6654433 32 11223466788999999998765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.35 Score=49.78 Aligned_cols=242 Identities=12% Similarity=0.093 Sum_probs=119.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.....+|||-|.+|++...+ .-.+| .-..+. +|+...... +-.+.+||.+++|..-.....
T Consensus 34 p~~~~~~SP~G~~l~~~~~~---------~V~~~--~g~~~~--~l~~~~~~~----V~~~~fSP~~kYL~tw~~~pi-- 94 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA---------GVECW--GGPSKA--KLVRFRHPD----VKYLDFSPNEKYLVTWSREPI-- 94 (561)
T ss_pred chhheeecCcchheehhhcc---------ceEEc--cccchh--heeeeecCC----ceecccCcccceeeeeccCCc--
Confidence 47789999999998776542 23333 333322 222222211 456788999887765321110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee----cCCCC-ceeeeeeCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD----FGTPA-VYTAVEPSPD 185 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~----lt~~~-~~~~~~~SpD 185 (607)
+... .... + .....+++++|. +|.... +..+. ....+.||-|
T Consensus 95 ------------~~pe--------~e~s---p---------~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~ 142 (561)
T COG5354 95 ------------IEPE--------IEIS---P---------FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSID 142 (561)
T ss_pred ------------cChh--------hccC---C---------ccccCceeEEeccCceeEeeccccCCcccccceeeeeec
Confidence 0000 0000 0 011247888887 553221 11121 1226789999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc-eEEEE-Eee
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS-TLYWV-EAQ 263 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~-~l~~~-~~~ 263 (607)
.++++.... ..|+++++ ++...+..- +.. .-.+.+.++|||.|.. .|++. .-.
T Consensus 143 D~y~ARvv~--------------~sl~i~e~-t~n~~~~p~---~~l-------r~~gi~dFsisP~~n~~~la~~tPEk 197 (561)
T COG5354 143 DKYVARVVG--------------SSLYIHEI-TDNIEEHPF---KNL-------RPVGILDFSISPEGNHDELAYWTPEK 197 (561)
T ss_pred chhhhhhcc--------------CeEEEEec-CCccccCch---hhc-------cccceeeEEecCCCCCceEEEEcccc
Confidence 888876632 36888887 444333211 110 1134567999997432 23332 111
Q ss_pred cCCCCccccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcCCCcEEEEE--Eec---cc--cceEEEEEcCCCCC
Q 007338 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNE--TWY---KT--SQTRTWLVCPGSKD 335 (607)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~Dg~~l~~~--~~~---~~--~~~~l~~~dl~~~~ 335 (607)
.+.. ..+.++.. |.. ....... ....--.+-|.+.|.+++.. +.. +. +...||++++...
T Consensus 198 ~~kp--------a~~~i~sI-p~~--s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~- 265 (561)
T COG5354 198 LNKP--------AMVRILSI-PKN--SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER- 265 (561)
T ss_pred CCCC--------cEEEEEEc-cCC--CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-
Confidence 1111 11112221 211 1111111 12233457899999875432 211 11 3468999988752
Q ss_pred CCceEee--eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 336 VAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 336 ~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
..+... ...+-+ +.|.|.++.+.+..
T Consensus 266 -~i~V~~~~~~pVhd---------f~W~p~S~~F~vi~ 293 (561)
T COG5354 266 -SIPVEKDLKDPVHD---------FTWEPLSSRFAVIS 293 (561)
T ss_pred -ccceecccccccee---------eeecccCCceeEEe
Confidence 333321 222444 89999999877665
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.25 Score=48.57 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=119.3
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
+-..+..+| ++..++|.+ | ...-++++|..+|+..+....+.+. -.++.-.||+||++||.+..+
T Consensus 6 RgH~~a~~p~~~~avafaR-R--------PG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd--- 71 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFAR-R--------PGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND--- 71 (305)
T ss_pred cccceeeCCCCCeEEEEEe-C--------CCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc---
Confidence 467888999 555555554 3 3578999999999876544333322 123466899999999986211
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCee---ecCCCC-ceeeeeeCCCC
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK---DFGTPA-VYTAVEPSPDQ 186 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~---~lt~~~-~~~~~~~SpDg 186 (607)
+.. ....|-++|+....+ .+...+ .-..+.+.|||
T Consensus 72 ---------------------------~~~--------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 72 ---------------------------YET--------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred ---------------------------cCC--------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 000 134555666643222 333333 22478899999
Q ss_pred ceEEEEEccC---CCccccCCC--cCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 187 KYVLITSMHR---PYSYKVPCA--RFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 187 ~~i~~~~~~~---~~~~~~~~~--~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
+.|++..-.. |+.-..+.+ .-...|..+|..+|++..-..+|-. .-....|.++|.+||. + +..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~--V-~~a 179 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGT--V-AFA 179 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCc--E-EEE
Confidence 9998884321 211111111 1124677888887764432222111 0123456799999986 2 333
Q ss_pred eecCCCCccccCCCceEEeccCCCCCCCCcee-------eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-------LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
.+..++.. .....+..... |...+. .........+++++++|..++..+.. . ..+.++|.++
T Consensus 180 ~Q~qg~~~---~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-G--g~~~~~d~~t 248 (305)
T PF07433_consen 180 MQYQGDPG---DAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-G--GRVAVWDAAT 248 (305)
T ss_pred EecCCCCC---ccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-C--CEEEEEECCC
Confidence 33333221 11122222221 101111 11223456789999998766544321 2 3555668777
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.4 Score=46.38 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=40.9
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc---ccceeeEcCCCcEEEEEEecccc
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~---~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
.+.+|||||.+|+- ...+.++++++ ++|........... -.....|+|||+.++.... +
T Consensus 192 ~l~FS~dGK~iLls-------------T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~--d- 253 (311)
T KOG1446|consen 192 DLEFSPDGKSILLS-------------TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD--D- 253 (311)
T ss_pred eeEEcCCCCEEEEE-------------eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC--C-
Confidence 58999999965431 12245677775 77732222222111 1246789999997665432 2
Q ss_pred ceEEEEEcCCCC
Q 007338 323 QTRTWLVCPGSK 334 (607)
Q Consensus 323 ~~~l~~~dl~~~ 334 (607)
.+|++++++++
T Consensus 254 -g~i~vw~~~tg 264 (311)
T KOG1446|consen 254 -GTIHVWNLETG 264 (311)
T ss_pred -CcEEEEEcCCC
Confidence 35667777773
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.036 Score=56.68 Aligned_cols=246 Identities=13% Similarity=0.166 Sum_probs=120.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-----eecccCCCccccccccceEEecCCe-EEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNST-LLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~Wspd~~-~l~~~~ 105 (607)
-++...+-|.|.+++--+ ....+-.||.++... ++|-..+ .-.+..++||+.+. +|+.+.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E----~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCE----THQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred EEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCccc----ccccceeeecCCCCeEEEEec
Confidence 478888999999865432 346788889987653 3332111 12256899999855 555531
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-C--CCeeecCCCCceeeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D--GTAKDFGTPAVYTAVEP 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--g~~~~lt~~~~~~~~~~ 182 (607)
.. +++++.. ++..+...-.+..|+.|+ . |-.-. +...+|
T Consensus 235 ~a--------------------------qakl~DR------dG~~~~e~~KGDQYI~Dm~nTKGHia~------lt~g~w 276 (641)
T KOG0772|consen 235 SA--------------------------QAKLLDR------DGFEIVEFSKGDQYIRDMYNTKGHIAE------LTCGCW 276 (641)
T ss_pred Cc--------------------------ceeEEcc------CCceeeeeeccchhhhhhhccCCceee------eecccc
Confidence 11 0111110 110010112345566665 1 22222 346789
Q ss_pred CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
.|+.+..+.+...+ ..|.+|+++. .+-.++..- ....+.+..+....|++||+.+ ..
T Consensus 277 hP~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~-------k~~~g~Rv~~tsC~~nrdg~~i---Aa 334 (641)
T KOG0772|consen 277 HPDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKT-------KPAGGKRVPVTSCAWNRDGKLI---AA 334 (641)
T ss_pred ccCcccceEEecCC------------CcEEEEecCCchhheeEEee-------ccCCCcccCceeeecCCCcchh---hh
Confidence 99988888776432 3677888763 222222210 0000112223358999999941 11
Q ss_pred eecCC--CCcccc--CCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCC
Q 007338 262 AQDRG--DANVEV--SPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 337 (607)
Q Consensus 262 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~ 337 (607)
....| +.|..- -.+-..++.+ -+.....++.+.||+||+.|++... ++.-++| ||..-
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~-----------AH~~g~~Itsi~FS~dg~~LlSRg~--D~tLKvW--DLrq~--- 396 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKD-----------AHLPGQDITSISFSYDGNYLLSRGF--DDTLKVW--DLRQF--- 396 (641)
T ss_pred cccCCceeeeecCCcccccceEeee-----------ccCCCCceeEEEeccccchhhhccC--CCceeee--ecccc---
Confidence 11111 111100 0001111111 1112235788999999998887643 2334555 55542
Q ss_pred ceEeeec-cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 338 PRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 338 ~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+.|.-+ .....|. ...+.+|||.+.|+....
T Consensus 397 kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccchhhhcCCCccCC---CCccccCCCceEEEeccc
Confidence 1333210 0111111 112789999887765443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.056 Score=51.20 Aligned_cols=157 Identities=15% Similarity=0.190 Sum_probs=87.2
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
++-.-+++.-.+..-++..+|||.-....+++.. -...+-++|+++-+.++-.-...+ .+..+..|||
T Consensus 136 g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--------~DktvKvWnl~~~~l~~~~~gh~~----~v~t~~vSpD 203 (315)
T KOG0279|consen 136 GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS--------WDKTVKVWNLRNCQLRTTFIGHSG----YVNTVTVSPD 203 (315)
T ss_pred ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--------CCceEEEEccCCcchhhccccccc----cEEEEEECCC
Confidence 4334444432213368999999997444444432 124566679988776654333332 3668899999
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCCCC
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPA 175 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~~~ 175 (607)
|.+.... |+ ..+++++|+ .+ ....+....
T Consensus 204 GslcasG-------------------------gk------------------------dg~~~LwdL~~~k~lysl~a~~ 234 (315)
T KOG0279|consen 204 GSLCASG-------------------------GK------------------------DGEAMLWDLNEGKNLYSLEAFD 234 (315)
T ss_pred CCEEecC-------------------------CC------------------------CceEEEEEccCCceeEeccCCC
Confidence 9987752 11 134445555 44 344444555
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCC--cceeecCC
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR--SISWRADK 253 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~wspdg 253 (607)
.+.+++|||+ ++.+.... ...|-+||++++.+ +.++.....-+ -.....++ ..+||+||
T Consensus 235 ~v~sl~fspn-rywL~~at-------------~~sIkIwdl~~~~~--v~~l~~d~~g~---s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 235 IVNSLCFSPN-RYWLCAAT-------------ATSIKIWDLESKAV--VEELKLDGIGP---SSKAGDPICLSLAWSADG 295 (315)
T ss_pred eEeeEEecCC-ceeEeecc-------------CCceEEEeccchhh--hhhcccccccc---ccccCCcEEEEEEEcCCC
Confidence 6678999998 44444332 12578889887632 22211111101 01112233 49999999
Q ss_pred C
Q 007338 254 P 254 (607)
Q Consensus 254 ~ 254 (607)
.
T Consensus 296 ~ 296 (315)
T KOG0279|consen 296 Q 296 (315)
T ss_pred c
Confidence 8
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0053 Score=59.03 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=66.0
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.+.+++.+.| .++.|++.+|.+-. +.|+||.+|+= .|.+.+ .......||++||+|+.
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~~-----~~P~VIv~hei------------~Gl~~~---i~~~a~rlA~~Gy~v~~- 59 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGAG-----GFPGVIVLHEI------------FGLNPH---IRDVARRLAKAGYVVLA- 59 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcCC-----CCCEEEEEecc------------cCCchH---HHHHHHHHHhCCcEEEe-
Confidence 3567888777 89999999998622 23999988742 111110 11124799999999998
Q ss_pred CCCcee-ccCC----CC----c-----hhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 562 PSIPII-GEGL----WS----N-----WFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 562 ~~~~~~-g~g~----~~----~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
|++-.+ |... .. . -.+ .+.+.|+.++++||.++..+|.+++.
T Consensus 60 Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~a~~~~L~~~~~~~~~~ig 115 (236)
T COG0412 60 PDLYGRQGDPTDIEDEPAELETGLVERVDP-AEVLADIDAALDYLARQPQVDPKRIG 115 (236)
T ss_pred chhhccCCCCCcccccHHHHhhhhhccCCH-HHHHHHHHHHHHHHHhCCCCCCceEE
Confidence 655322 2111 11 1 112 56788999999999999988888764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.23 Score=51.06 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=84.2
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCC--EEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~--~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
..+.|++|.+.+..+....+.|. +. .+.+..|||-|+ -|||-..... ..-..+-++.+.-+.....-..
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr--~~--gi~dFsisP~~n~~~la~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~l 220 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLR--PV--GILDFSISPEGNHDELAYWTPEKL-----NKPAMVRILSIPKNSVLVTKNL 220 (561)
T ss_pred ccCeEEEEecCCccccCchhhcc--cc--ceeeEEecCCCCCceEEEEccccC-----CCCcEEEEEEccCCCeeeeeee
Confidence 46789999965333333333332 12 588999999644 4666654321 1123344444444433222111
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.. ..-..+.|.+.++.+.+....+ +. .++ .|++.+.||
T Consensus 221 fk----~~~~qLkW~~~g~~ll~l~~t~-----------------------------~k------snK---syfgesnLy 258 (561)
T COG5354 221 FK----VSGVQLKWQVLGKYLLVLVMTH-----------------------------TK------SNK---SYFGESNLY 258 (561)
T ss_pred Ee----ecccEEEEecCCceEEEEEEEe-----------------------------ee------ccc---ceeccceEE
Confidence 11 0123788998888666542111 00 011 124568899
Q ss_pred EEeCCCCeeec--CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 161 LGSLDGTAKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 161 ~~~~~g~~~~l--t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
++++++.-.++ ...+.+.++.|+|+++++++.+.-- +..+-.+|+.+.
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----------pa~~s~~~lr~N 308 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM-----------PASVSVFDLRGN 308 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEeccc-----------ccceeecccccc
Confidence 99986532222 2234567999999999988886321 234566677665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.061 Score=55.70 Aligned_cols=147 Identities=10% Similarity=0.160 Sum_probs=89.1
Q ss_pred ccceEEccCCCEEEEEeecCc--ccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
--...|.+-|..|..+...+. .+..+-+...||++++. |+...+-=..++. +-++.|+++++-+....
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP----Vhdv~W~~s~~EF~Vvy----- 289 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP----VHDVTWSPSGREFAVVY----- 289 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC----ceEEEECCCCCEEEEEE-----
Confidence 345789999999998876532 22223567889999998 4443331113443 66899999987544321
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCeeecCCCCceeeeeeCCCCceEE
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~~~~~~~~~SpDg~~i~ 190 (607)
| . -...+-++|+.|.+.--...+-...+-|||.|+.|+
T Consensus 290 -------------------G---------f--------------MPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 290 -------------------G---------F--------------MPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred -------------------e---------c--------------ccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEE
Confidence 0 0 123444556655443322223335678999999999
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
++.-. +.+.++-+||+.+ .+.|.... ..+..-+.|+|||+.
T Consensus 328 lAGFG----------NL~G~mEvwDv~n--~K~i~~~~------------a~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 328 LAGFG----------NLPGDMEVWDVPN--RKLIAKFK------------AANTTVFEWSPDGEY 368 (566)
T ss_pred EeecC----------CCCCceEEEeccc--hhhccccc------------cCCceEEEEcCCCcE
Confidence 98532 1245788999877 34443311 122234999999983
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0068 Score=58.98 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=58.9
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
.++.+...+...+|.|.+- .++ +.|+||++|+.. ++...+ ....+.|+++||.|+. ++.+.
T Consensus 4 ~~~~~~~~~~~~~~~p~~~-~~~--~~p~vv~~HG~~-----------~~~~~~----~~~~~~l~~~G~~v~~-~d~~g 64 (249)
T PRK10566 4 IETRELAGIEVLHAFPAGQ-RDT--PLPTVFFYHGFT-----------SSKLVY----SYFAVALAQAGFRVIM-PDAPM 64 (249)
T ss_pred EEEEEecCcceEEEcCCCC-CCC--CCCEEEEeCCCC-----------cccchH----HHHHHHHHhCCCEEEE-ecCCc
Confidence 3344444566788889752 223 349999988531 111111 1235799999999998 66544
Q ss_pred ecc--CCC---CchhhH---HHHhhcHHHHHHHHHHhcccccccc
Q 007338 567 IGE--GLW---SNWFQV---QRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 567 ~g~--g~~---~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.|. ++. ....|+ ....+++.+++++|.+++.+|.+++
T Consensus 65 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 109 (249)
T PRK10566 65 HGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRL 109 (249)
T ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccce
Confidence 332 111 111222 3446778889999999998888764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.98 Score=52.09 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=36.3
Q ss_pred cccceEEccC-CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEE
Q 007338 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-d~~~l~~~ 104 (607)
.+....|+|. +++||... ....|.+||+.+++.......... .+..+.|+| ++.+|+..
T Consensus 534 ~v~~l~~~~~~~~~las~~----------~Dg~v~lWd~~~~~~~~~~~~H~~----~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN----------FEGVVQVWDVARSQLVTEMKEHEK----RVWSIDYSSADPTLLASG 594 (793)
T ss_pred ceeeEEeccCCCCEEEEEe----------CCCeEEEEECCCCeEEEEecCCCC----CEEEEEEcCCCCCEEEEE
Confidence 4677899875 55554433 235788889988765433222121 266889996 57776664
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.033 Score=55.36 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=117.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|+|+|++|+..+. .+...|| +..+=..+.+-...+. .+..+.||.++..++.....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSgD~g---- 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISGDKG---- 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEcCCC----
Confidence 4778999999999988775 4566777 3211111111111221 26789999999988863110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCceEE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~i~ 190 (607)
|- ++ +|.-+++. +..+-.....+..++|||+...++
T Consensus 160 ------------------G~----------iK---------------yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 160 ------------------GM----------IK---------------YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred ------------------ce----------EE---------------ecccchhhhHHhhHhhhhhhheeccCCCCceeE
Confidence 10 01 00001100 111111113456899999766555
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCC-CCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
-.+.+ ..|.+||.. ..+.++|.. + .-.++.+.|-|... ++... +.+
T Consensus 197 t~SdD-------------g~ikiWdf~~~kee~vL~G-H------------gwdVksvdWHP~kg--Liasg---skD-- 243 (464)
T KOG0284|consen 197 TCSDD-------------GTIKIWDFRMPKEERVLRG-H------------GWDVKSVDWHPTKG--LIASG---SKD-- 243 (464)
T ss_pred EecCC-------------CeEEEEeccCCchhheecc-C------------CCCcceeccCCccc--eeEEc---cCC--
Confidence 54432 367788875 444444421 1 12245688888765 22221 111
Q ss_pred cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEe--eecccc
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFE 347 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l--~~~~~~ 347 (607)
+.+.+|| |..|...-.|..+...+..+.|++++..|+..+. + ..+-++|..+- .+.... ....+.
T Consensus 244 ------nlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk--D--~~~kv~DiR~m-kEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 244 ------NLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK--D--QSCKVFDIRTM-KELFTYRGHKKDVT 310 (464)
T ss_pred ------ceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccC--C--ceEEEEehhHh-HHHHHhhcchhhhe
Confidence 2344455 5666444456666677888999999976665431 1 24555666542 111111 011233
Q ss_pred ccccCCCCCCeeeCCCCCEEEEEe
Q 007338 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. +.|.|-.+.++...
T Consensus 311 ~---------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 311 S---------LTWHPLNESLFTSG 325 (464)
T ss_pred e---------eccccccccceeec
Confidence 3 77888766665544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.14 Score=55.19 Aligned_cols=80 Identities=6% Similarity=-0.013 Sum_probs=46.9
Q ss_pred EEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCC
Q 007338 278 IYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (607)
Q Consensus 278 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (607)
+.+|++ .+|...+..+.+...+..+++||+|+.|+... +++ .|.+.|+.++. -...+.++ .+... .
T Consensus 559 VRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--ed~--~I~iWDl~~~~-~v~~l~~H--t~ti~-----S 624 (707)
T KOG0263|consen 559 VRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGD--EDG--LIKIWDLANGS-LVKQLKGH--TGTIY-----S 624 (707)
T ss_pred EEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecc--cCC--cEEEEEcCCCc-chhhhhcc--cCcee-----E
Confidence 444554 45534455555667788999999999988753 223 45566888731 12222232 11111 1
Q ss_pred eeeCCCCCEEEEEe
Q 007338 358 MTRTSTGTNVIAKI 371 (607)
Q Consensus 358 ~~~~~dg~~~~~~~ 371 (607)
++++.||..++...
T Consensus 625 lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 625 LSFSRDGNVLASGG 638 (707)
T ss_pred EEEecCCCEEEecC
Confidence 88899998665543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.61 Score=45.14 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=59.3
Q ss_pred eEEEEECCCCceeecccCCCcc-ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCcccccccccccc
Q 007338 63 RVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (607)
Q Consensus 63 ~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 141 (607)
.+.++|+++++.+.+....... .......+...++|+++|....... .
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~---------------------~---------- 109 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG---------------------A---------- 109 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC---------------------T----------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc---------------------c----------
Confidence 4455699999888776542111 1112347788899997666421100 0
Q ss_pred ccCcccccceeeeccceEEEEeCCCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 142 LKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
. . .....||+++.+++.+.+... ..-..+.||||++.|+++... ...|+.++++
T Consensus 110 -~----~-----~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~ 164 (246)
T PF08450_consen 110 -S----G-----IDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLD 164 (246)
T ss_dssp -T----C-----GGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEE
T ss_pred -c----c-----ccccceEEECCCCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEecc
Confidence 0 0 011578888887665554322 233589999999998887432 2368888875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.8 Score=46.48 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=22.3
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.+..+.|+|++..++++... ...|.+||+.+++
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~ 159 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGK 159 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCe
Confidence 45689999987655555332 2368899988763
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.069 Score=52.56 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=53.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCC----CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYP----DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~----~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
.|||||+++ -+.|..+. ........+.++.+.+|||-..+ ...+++++|+.+=++.......
T Consensus 107 ~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 107 SIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred cEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEec
Confidence 589999873 33333221 22235556667777799998654 3579999999876554333222
Q ss_pred CccccccccceEEecCCeEEEEEe
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
++ .+..++++++|.++...+
T Consensus 173 ~~----~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 173 KG----PLAALAFSPDGTLLATAS 192 (391)
T ss_pred CC----ceeEEEECCCCCEEEEec
Confidence 22 267889999999999863
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=58.07 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=59.6
Q ss_pred EEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCC-CcCCCCCCchhHHHhccCeEEEeCC
Q 007338 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-NEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 484 ~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p-~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
.|.+++..|. +.++++.|.+-. +.|+||++||- ++. +.+..........|+++||.|+. +
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~~-----~~~~VlllHG~------------g~~~~~~~~~~~~la~~La~~Gy~Vl~-~ 62 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAVG-----PRGVVIYLPPF------------AEEMNKSRRMVALQARAFAAGGFGVLQ-I 62 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCCC-----CceEEEEECCC------------cccccchhHHHHHHHHHHHHCCCEEEE-E
Confidence 4667776764 679998887521 34889988852 110 01110000114588899999998 6
Q ss_pred CCceecc-CCCCchhhHHHHhhcHHHHHHHHHHhccccccccccc
Q 007338 563 SIPIIGE-GLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEH 606 (607)
Q Consensus 563 ~~~~~g~-g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 606 (607)
+.+..|. .+...+.-....++|+..++++|.+.+. +.=.|+-|
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~-~~v~LvG~ 106 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGH-PPVTLWGL 106 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 6654442 1112222235678999999999988763 33344443
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.08 Score=57.99 Aligned_cols=81 Identities=23% Similarity=0.255 Sum_probs=50.8
Q ss_pred EEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCc-cc-
Q 007338 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI-CL- 85 (607)
Q Consensus 9 ~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~-~~- 85 (607)
+.++.| .+..+.+.++ .+.+....+.|.|+.||.+.- ..+|.+|++.++.. ..++..... ..
T Consensus 122 ~~~~~D---~s~~~~lrgh--~apVl~l~~~p~~~fLAvss~----------dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 122 LLNLDD---SSQEKVLRGH--DAPVLQLSYDPKGNFLAVSSC----------DGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred EEeccc---cchheeeccc--CCceeeeeEcCCCCEEEEEec----------CceEEEEEcccchhhhhcccCCcccccc
Confidence 345553 4455555543 336999999999999998763 35788889988865 344322110 00
Q ss_pred -cccccceEEecC-CeEEEEE
Q 007338 86 -NAVFGSFVWVNN-STLLIFT 104 (607)
Q Consensus 86 -~~~~~~~~Wspd-~~~l~~~ 104 (607)
+.....++|+|+ +++++..
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred ccceeeeeeecCCCCeEEeec
Confidence 112347899999 6676653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.8 Score=44.37 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....++...|+-||..||+-.- + ..+-+++..++.+..+-.++.. +..+.|+.+|.+|+..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~--------~--G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSE--------D--GEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSG 294 (524)
T ss_pred ccCCcceEEecCCCCeEEEeec--------C--cEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEec
Confidence 3346889999999999999763 2 4666667877766666544432 6789999888887763
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.7 Score=43.53 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=29.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
.-..|.|-|+++.|+|.- -....|+.+++++|+.+.+
T Consensus 26 ~gEgP~w~~~~~~L~w~D---------I~~~~i~r~~~~~g~~~~~ 62 (307)
T COG3386 26 LGEGPVWDPDRGALLWVD---------ILGGRIHRLDPETGKKRVF 62 (307)
T ss_pred cccCccCcCCCCEEEEEe---------CCCCeEEEecCCcCceEEE
Confidence 356899999999998863 2458999999998876655
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0057 Score=62.50 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl 559 (607)
..+.++++- +|.+|+|+|.+|.+ ++ |.|+||... |...+..-.+ .+..+|+.+|+++|
T Consensus 164 ~i~~v~iP~-eg~~I~g~LhlP~~---~~--p~P~VIv~g---------------GlDs~qeD~~~l~~~~l~~rGiA~L 222 (411)
T PF06500_consen 164 PIEEVEIPF-EGKTIPGYLHLPSG---EK--PYPTVIVCG---------------GLDSLQEDLYRLFRDYLAPRGIAML 222 (411)
T ss_dssp EEEEEEEEE-TTCEEEEEEEESSS---SS---EEEEEEE-----------------TTS-GGGGHHHHHCCCHHCT-EEE
T ss_pred CcEEEEEee-CCcEEEEEEEcCCC---CC--CCCEEEEeC---------------CcchhHHHHHHHHHHHHHhCCCEEE
Confidence 568888875 55999999999983 23 559999763 2232211111 12347899999999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
. ..+|..|+-. .....++--.=..+.++||.+..+||.++|.
T Consensus 223 t-vDmPG~G~s~--~~~l~~D~~~l~~aVLd~L~~~p~VD~~RV~ 264 (411)
T PF06500_consen 223 T-VDMPGQGESP--KWPLTQDSSRLHQAVLDYLASRPWVDHTRVG 264 (411)
T ss_dssp E-E--TTSGGGT--TT-S-S-CCHHHHHHHHHHHHSTTEEEEEEE
T ss_pred E-EccCCCcccc--cCCCCcCHHHHHHHHHHHHhcCCccChhheE
Confidence 8 7777777421 1111110000124668999999999999874
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=56.29 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=51.0
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchh
Q 007338 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWF 576 (607)
Q Consensus 497 g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~ 576 (607)
++||+|+++. +++ |+||+.|+.. +....+.. .+...+++...||+|+. |+.+..+... ....
T Consensus 1 ~~ly~P~~~~--~~~--P~vv~lHG~~-----------~~~~~~~~-~~~~~~~a~~~g~~Vv~-Pd~~g~~~~~-~~~~ 62 (212)
T TIGR01840 1 MYVYVPAGLT--GPR--ALVLALHGCG-----------QTASAYVI-DWGWKAAADRYGFVLVA-PEQTSYNSSN-NCWD 62 (212)
T ss_pred CEEEcCCCCC--CCC--CEEEEeCCCC-----------CCHHHHhh-hcChHHHHHhCCeEEEe-cCCcCccccC-CCCC
Confidence 4799999864 334 9999988641 01111110 01123555668999998 5543322111 1111
Q ss_pred h--------HHHHhhcHHHHHHHHHHhcccccccc
Q 007338 577 Q--------VQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 577 ~--------~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
| ......++...+++|.++.-+|.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i 97 (212)
T TIGR01840 63 WFFTHHRARGTGEVESLHQLIDAVKANYSIDPNRV 97 (212)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHhcCcChhhe
Confidence 1 12345677888999998877887764
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.11 Score=52.96 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=46.5
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
-|+|-++.+ ..+-.++..+. ...+...+||.+|..+.-.+ ....|-++|+++|+..+-. ..++
T Consensus 238 ~vklW~vy~--~~~~lrtf~gH--~k~Vrd~~~s~~g~~fLS~s----------fD~~lKlwDtETG~~~~~f--~~~~- 300 (503)
T KOG0282|consen 238 LVKLWNVYD--DRRCLRTFKGH--RKPVRDASFNNCGTSFLSAS----------FDRFLKLWDTETGQVLSRF--HLDK- 300 (503)
T ss_pred eEEEEEEec--Ccceehhhhcc--hhhhhhhhccccCCeeeeee----------cceeeeeeccccceEEEEE--ecCC-
Confidence 356677763 22223333222 22589999999999865443 2357778899999764332 2211
Q ss_pred cccccceEEecCCeEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~ 103 (607)
....+.+.||+.-+|+
T Consensus 301 --~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 301 --VPTCVKFHPDNQNIFL 316 (503)
T ss_pred --CceeeecCCCCCcEEE
Confidence 1446677888754444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.66 Score=46.46 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=23.1
Q ss_pred EEEeC-CCCeeecC-CC-CceeeeeeCCCCceEEEEEccC
Q 007338 160 VLGSL-DGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHR 196 (607)
Q Consensus 160 ~~~~~-~g~~~~lt-~~-~~~~~~~~SpDg~~i~~~~~~~ 196 (607)
+.+|+ .|+..... .. .++..++|.|-+++|+..+..+
T Consensus 148 ~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 148 RLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred EEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 34455 56544432 22 3567889999889888776554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.9 Score=43.04 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=25.5
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
..+.+|.|||++++.... | ...+-++|++.++.-.
T Consensus 98 ~~~~ls~dgk~~~V~N~T-P----------a~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFT-P----------ATSVTVVDLAAKKVVG 132 (342)
T ss_dssp GGEEE-TTSSEEEEEEES-S----------SEEEEEEETTTTEEEE
T ss_pred cceEEccCCcEEEEEccC-C----------CCeEEEEECCCCceee
Confidence 467999999999988532 2 2478899999876644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.46 Score=45.92 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=25.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
....++|||||++|+-.+. + .-|=+|+--+|+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSv--------D--GFiEVWny~~GKlr 248 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSV--------D--GFIEVWNYTTGKLR 248 (508)
T ss_pred chhheeeCCCCceEeeccc--------c--ceeeeehhccchhh
Confidence 5788999999999877653 3 34556677788875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.1 Score=54.85 Aligned_cols=43 Identities=19% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCCCCcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 27 YPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 27 ~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
+..+..+.+..|.| |-.+||.... ++.-+||.+...++.....
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEM 667 (1012)
T ss_pred cccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccC
Confidence 34455688899999 8889988764 6788899988776654333
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.21 Score=52.34 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=65.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecC-CeEEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~ 109 (607)
.+-..+|++||+++|--.+ .+.++++|..+-++ ..++.+.. -+..++|.|= ..+|+...
T Consensus 303 eVCgLkws~d~~~lASGgn----------DN~~~Iwd~~~~~p~~~~~~H~a-----AVKA~awcP~q~~lLAsGG---- 363 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGN----------DNVVFIWDGLSPEPKFTFTEHTA-----AVKALAWCPWQSGLLATGG---- 363 (484)
T ss_pred eeeeeEECCCCCeeccCCC----------ccceEeccCCCccccEEEeccce-----eeeEeeeCCCccCceEEcC----
Confidence 4778999999999876532 46778888854433 44543332 2678999997 45766520
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCc
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQK 187 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~ 187 (607)
|. ....|...|. +|+ ...+-....+..+.||+..+
T Consensus 364 --------------------Gs-----------------------~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 364 --------------------GS-----------------------ADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred --------------------CC-----------------------cccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence 11 1134445555 554 33444556778999999999
Q ss_pred eEEEEEc
Q 007338 188 YVLITSM 194 (607)
Q Consensus 188 ~i~~~~~ 194 (607)
.|+.+..
T Consensus 401 Ei~sthG 407 (484)
T KOG0305|consen 401 ELLSTHG 407 (484)
T ss_pred EEEEecC
Confidence 9988754
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.80 E-value=2 Score=42.40 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCeeeeecCCCC-CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccccccc--ceEE
Q 007338 18 LGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFG--SFVW 94 (607)
Q Consensus 18 ~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~--~~~W 94 (607)
+|+..+...-+.+ -.+....|||||++|+-+.+. - ..+..-|-++|++. ..+++-..+..+ ++ .+.|
T Consensus 37 ~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-~----~~g~G~IgVyd~~~-~~~ri~E~~s~G----IGPHel~l 106 (305)
T PF07433_consen 37 TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-Y----ETGRGVIGVYDAAR-GYRRIGEFPSHG----IGPHELLL 106 (305)
T ss_pred CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-c----CCCcEEEEEEECcC-CcEEEeEecCCC----cChhhEEE
Confidence 5555543322333 246789999999987655442 1 25678899999983 334443333322 33 7889
Q ss_pred ecCCeEEEEE
Q 007338 95 VNNSTLLIFT 104 (607)
Q Consensus 95 spd~~~l~~~ 104 (607)
.||++.|++.
T Consensus 107 ~pDG~tLvVA 116 (305)
T PF07433_consen 107 MPDGETLVVA 116 (305)
T ss_pred cCCCCEEEEE
Confidence 9998655554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=4.9 Score=46.37 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
.+....|+|||++||.... + ..|.+|++.+
T Consensus 485 ~V~~i~fs~dg~~latgg~--------D--~~I~iwd~~~ 514 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGV--------N--KKIKIFECES 514 (793)
T ss_pred cEEEEEECCCCCEEEEEeC--------C--CEEEEEECCc
Confidence 4788999999998876543 2 4566667643
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.055 Score=53.56 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=42.0
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHH-hccCeEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAV 558 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~l-a~~GY~V 558 (607)
+.+..+|.+. -|.++...||+|+++.. ++ .|+|++.|+.. +....|.. ....+.| +..||+|
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~~--~P~vvllHG~~-----------~~~~~~~~--~~~~~~la~~~g~~V 75 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAA-GP--VPVLWYLSGLT-----------CTHENFMI--KAGAQRFAAEHGLAL 75 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccC-CC--CCEEEEccCCC-----------CCccHHHh--hhHHHHHHhhcCcEE
Confidence 5667777776 56789999999998654 33 49999987531 11111110 0113344 4579999
Q ss_pred EeCCCC
Q 007338 559 LAGPSI 564 (607)
Q Consensus 559 l~~~~~ 564 (607)
+. |+.
T Consensus 76 v~-Pd~ 80 (275)
T TIGR02821 76 VA-PDT 80 (275)
T ss_pred EE-eCC
Confidence 99 554
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.3 Score=50.34 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=25.8
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
..++++|||++|+++... ...|.++|++++..+.+
T Consensus 743 ~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 743 SGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred cEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEE
Confidence 468999999998887432 24789999987765544
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.085 Score=52.45 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=43.7
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.|. -|.++...+|+|+. .++++| |+|++.|+.. +....|.... ...++++.+||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~--Pvv~~lHG~~-----------~~~~~~~~~~-~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKV--PVLYWLSGLT-----------CTDENFIQKS-GAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCC--CEEEEecCCC-----------cChHHHHHhh-hHHHHHhhcCeEEE
Confidence 5667777774 67899999999994 444544 9999988531 1111221111 11357778899999
Q ss_pred eCCCC
Q 007338 560 AGPSI 564 (607)
Q Consensus 560 ~~~~~ 564 (607)
. |+.
T Consensus 82 ~-pd~ 85 (283)
T PLN02442 82 A-PDT 85 (283)
T ss_pred e-cCC
Confidence 9 554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=5 Score=43.83 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=24.2
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.+..++|+|++..+++++.. ...|.+||+.+++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~ 159 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEK 159 (568)
T ss_pred cEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCc
Confidence 56789999999888766432 1368899988763
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.099 Score=51.69 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+.+.|.. +|.++.|+++.|.+ +.+ |.||++|++.. .+-+.+ .........|+++||.|+. +
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~--~~~----~~vv~i~gg~~--------~~~g~~---~~~~~la~~l~~~G~~v~~-~ 63 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGA--SHT----TGVLIVVGGPQ--------YRVGSH---RQFVLLARRLAEAGFPVLR-F 63 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCC--CCC----CeEEEEeCCcc--------ccCCch---hHHHHHHHHHHHCCCEEEE-e
Confidence 4677864 67999999999974 222 33444342210 000000 0001124688999999998 6
Q ss_pred CCceeccCCCCch-hhHHHHhhcHHHHHHHHHHh
Q 007338 563 SIPIIGEGLWSNW-FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 563 ~~~~~g~g~~~~~-~~~~~~~~~~~~~v~~~~~~ 595 (607)
+.+ |.|...+. .-.+....|+.+++++|.++
T Consensus 64 Dl~--G~G~S~~~~~~~~~~~~d~~~~~~~l~~~ 95 (274)
T TIGR03100 64 DYR--GMGDSEGENLGFEGIDADIAAAIDAFREA 95 (274)
T ss_pred CCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 664 44433211 12245678899999999765
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.3 Score=50.02 Aligned_cols=138 Identities=11% Similarity=0.109 Sum_probs=88.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
-||-||.++ .+-...+++ .+.+..++-..+||-.+.+.-+.. ++..+.+||+.+..+..-. .+ .
T Consensus 143 Gdiiih~~~---t~~~tt~f~-~~sgqsvRll~ys~skr~lL~~as---------d~G~VtlwDv~g~sp~~~~--~~-~ 206 (673)
T KOG4378|consen 143 GDIIIHGTK---TKQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIAS---------DKGAVTLWDVQGMSPIFHA--SE-A 206 (673)
T ss_pred CcEEEEecc---cCcccccee-cCCCCeEEEeecccccceeeEeec---------cCCeEEEEeccCCCcccch--hh-h
Confidence 478899998 244555555 455656778999999999887763 4567888899876553221 11 1
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
..+.-.++.|+|....||.++ | + ...|+++|.
T Consensus 207 HsAP~~gicfspsne~l~vsV------------------------G---------------~---------Dkki~~yD~ 238 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSV------------------------G---------------Y---------DKKINIYDI 238 (673)
T ss_pred ccCCcCcceecCCccceEEEe------------------------c---------------c---------cceEEEeec
Confidence 122245788999877666642 1 0 124555565
Q ss_pred C-C-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 165 D-G-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 165 ~-g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
. . ....|+.......++|+|+|-+|+.-.. ..+|+.||+.+.
T Consensus 239 ~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s-------------~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLSTVAFSECGTYLCAGNS-------------KGELIAYDMRST 282 (673)
T ss_pred ccccccceeeecCCcceeeecCCceEEEeecC-------------CceEEEEecccC
Confidence 2 2 2344554445678999999988877643 237888888754
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.068 Score=54.12 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=55.6
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl 559 (607)
..+.+++...+| +|..++|.|.. + +.|+|||+|+|-| +.|+...+ ......||. .||.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~--~~p~vv~~HGGg~--------~~g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----D--SQATLFYLHGGGF--------ILGNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----C--CCCEEEEEeCCcc--------cCCCchhh----hHHHHHHHHHcCCEEE
Confidence 467788888888 69999999952 1 2499999986521 22222211 112456776 599999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. ++.+ ..+...+ ...++|+.++++||.+.
T Consensus 117 ~-vdYr-----lape~~~-p~~~~D~~~a~~~l~~~ 145 (318)
T PRK10162 117 G-IDYT-----LSPEARF-PQAIEEIVAVCCYFHQH 145 (318)
T ss_pred E-ecCC-----CCCCCCC-CCcHHHHHHHHHHHHHh
Confidence 8 4422 1121112 23478999999999764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.33 Score=50.26 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=33.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
.+...+|||||.-|.-... ++ .|-++...|.=.-.+..... .+-..+|.|+ ..++|.
T Consensus 106 A~~~gRW~~dGtgLlt~GE--------DG--~iKiWSrsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGE--------DG--VIKIWSRSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhcccCCCCceeeeecC--------Cc--eEEEEeccchHHHHHhhcCc-----eeEEEEECCCCCceEEe
Confidence 4677899999988755431 34 45555555443223322222 1557899999 456665
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.055 Score=35.41 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=23.2
Q ss_pred eeecCcccceeeEcCCCcEEEEEEecc-ccceEEEE
Q 007338 294 LHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (607)
Q Consensus 294 l~~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~~l~~ 328 (607)
++........+.|||||+.|+|..... .+..+||+
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 444555677899999999998887544 25567774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=1 Score=42.30 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
...++.+.+.+. .+....|--..+-|+-++. ...+-+||..+|+..+-..... .+.++..++|
T Consensus 133 ~App~E~~ghtg--~Ir~v~wc~eD~~iLSSad----------d~tVRLWD~rTgt~v~sL~~~s-----~VtSlEvs~d 195 (334)
T KOG0278|consen 133 KAPPKEISGHTG--GIRTVLWCHEDKCILSSAD----------DKTVRLWDHRTGTEVQSLEFNS-----PVTSLEVSQD 195 (334)
T ss_pred CCCchhhcCCCC--cceeEEEeccCceEEeecc----------CCceEEEEeccCcEEEEEecCC-----CCcceeeccC
Confidence 334444544443 4777788766666554421 2466777999998754433332 2678899999
Q ss_pred CeEEEEE
Q 007338 98 STLLIFT 104 (607)
Q Consensus 98 ~~~l~~~ 104 (607)
|+++..+
T Consensus 196 G~ilTia 202 (334)
T KOG0278|consen 196 GRILTIA 202 (334)
T ss_pred CCEEEEe
Confidence 9987764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.89 Score=45.44 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=33.5
Q ss_pred cceEEEEeCCCCeeecCCCC--ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 156 TAQLVLGSLDGTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 156 ~~~l~~~~~~g~~~~lt~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
...||+++..|..+++.... .-..++||||++.++++-.. ...|+.++++
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 35899999766555443332 23589999999988877432 2367777765
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.2 Score=45.60 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=69.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC-CceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
.++..+|.|---+|+.+.. ....|++|++-+ +...+.... .+..+....|+++++.++...-+
T Consensus 216 gvsai~~fp~~~hLlLS~g---------mD~~vklW~vy~~~~~lrtf~g----H~k~Vrd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGG---------MDGLVKLWNVYDDRRCLRTFKG----HRKPVRDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred ccchhhhccceeeEEEecC---------CCceEEEEEEecCcceehhhhc----chhhhhhhhccccCCeeeeeecc---
Confidence 4889999996556655543 236788888865 332222211 22337789999998876654210
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCce
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~ 188 (607)
.-|-.+|+ +|+ ...+.......-+.+.||+..
T Consensus 280 ----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 280 ----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 01222344 453 334444444456789999978
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
++++... ..+|..||+.+++
T Consensus 314 ~fl~G~s------------d~ki~~wDiRs~k 333 (503)
T KOG0282|consen 314 IFLVGGS------------DKKIRQWDIRSGK 333 (503)
T ss_pred EEEEecC------------CCcEEEEeccchH
Confidence 8877643 2478889998775
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.44 Score=50.67 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.0
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (607)
..+..+..||||+||++.+.. ..|++|++++.+-+.|.
T Consensus 476 ~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred CcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 356788999999999998742 37999999999888765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.79 Score=43.46 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=45.1
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-------CCce-eecccCCCccccccc
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-------TGEA-KPLFESPDICLNAVF 89 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-------~g~~-~~lt~~~~~~~~~~~ 89 (607)
+|+..-.- .....+...-||++|+.++++...-. .....|.++|+. +.++ .++..... .+
T Consensus 83 tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~m-----g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-----ki 150 (327)
T KOG0643|consen 83 TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQM-----GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-----KI 150 (327)
T ss_pred CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhc-----CcceEEEEEEccCChhhhcccCceEEecCCcc-----ce
Confidence 55443333 33335788899999999999875421 345678888887 3332 23321111 14
Q ss_pred cceEEecCCeEEEE
Q 007338 90 GSFVWVNNSTLLIF 103 (607)
Q Consensus 90 ~~~~Wspd~~~l~~ 103 (607)
....|+|-++.|+.
T Consensus 151 t~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 151 TSALWGPLGETIIA 164 (327)
T ss_pred eeeeecccCCEEEE
Confidence 56788888776665
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=94.97 E-value=11 Score=44.90 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=36.7
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC--cccccccCCCCcceeecCCCc
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP--VCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~wspdg~~ 255 (607)
..++++|++..|+++... ...|++++..++.+..+.......... ......-..+..+.++|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 368899977777776432 237899999888776553211000000 000001123456899999973
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.057 Score=52.15 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=65.1
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+..+|. .+|...++|||.|++.+.++ |+||..|+.. +.++++-|+ . .+..+....||+|+.|-
T Consensus 36 ~~~s~~-~~g~~r~y~l~vP~g~~~~a----pLvv~LHG~~---~sgag~~~~-------s--g~d~lAd~~gFlV~yPd 98 (312)
T COG3509 36 SVASFD-VNGLKRSYRLYVPPGLPSGA----PLVVVLHGSG---GSGAGQLHG-------T--GWDALADREGFLVAYPD 98 (312)
T ss_pred Cccccc-cCCCccceEEEcCCCCCCCC----CEEEEEecCC---CChHHhhcc-------c--chhhhhcccCcEEECcC
Confidence 445665 47889999999999988654 8888888642 111222221 1 12356666799999821
Q ss_pred CCcee----ccCCC--Cch-hhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 563 SIPII----GEGLW--SNW-FQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 563 ~~~~~----g~g~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+.+-. +-+.. +.+ .-....+..+.+.|+.|+.+.=||+.||.
T Consensus 99 g~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVy 147 (312)
T COG3509 99 GYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVY 147 (312)
T ss_pred ccccccCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEE
Confidence 21100 01111 111 23346677889999999999999998873
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.18 Score=46.17 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh
Q 007338 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL 552 (607)
Q Consensus 473 ~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la 552 (607)
+.++..+++-|.++.++.|-.++++|+++-.+ ..|++++.|+. .|+- ++.- ..-.-+|.
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~N-----------AGNm-Ghr~--~i~~~fy~ 103 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHAN-----------AGNM-GHRL--PIARVFYV 103 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccC-----------CCcc-cchh--hHHHHHHH
Confidence 44555667889999999999999999999322 23999999852 1211 1110 11124788
Q ss_pred ccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 553 ARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 553 ~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+.+--||. .+ .+|||..-+....+-++-|..+++++|-.+-..|-..+
T Consensus 104 ~l~mnv~i-vs--YRGYG~S~GspsE~GL~lDs~avldyl~t~~~~dktki 151 (300)
T KOG4391|consen 104 NLKMNVLI-VS--YRGYGKSEGSPSEEGLKLDSEAVLDYLMTRPDLDKTKI 151 (300)
T ss_pred HcCceEEE-EE--eeccccCCCCccccceeccHHHHHHHHhcCccCCcceE
Confidence 88988887 32 36788776666667889999999999999888775543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=4.2 Score=39.54 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=24.8
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
..+..+++.|.|.+|++.+.. ..+.+||+++-+
T Consensus 217 ~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~T~Q 249 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVNTYQ 249 (430)
T ss_pred ceeeeEeecCCCceEEEecCC-------------CceeEEecccee
Confidence 356789999999999988642 257778887653
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.045 Score=42.48 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred CceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
|.+|....++|++- +..+|+.+|+- ++ +. ..+-...+.|+++||+|+. .+.
T Consensus 1 G~~L~~~~w~p~~~------~k~~v~i~HG~----~e---------h~--~ry~~~a~~L~~~G~~V~~-~D~ 51 (79)
T PF12146_consen 1 GTKLFYRRWKPENP------PKAVVVIVHGF----GE---------HS--GRYAHLAEFLAEQGYAVFA-YDH 51 (79)
T ss_pred CcEEEEEEecCCCC------CCEEEEEeCCc----HH---------HH--HHHHHHHHHHHhCCCEEEE-ECC
Confidence 67899999999852 23788877742 10 11 1111236899999999997 544
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.061 Score=54.33 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCcee
Q 007338 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (607)
Q Consensus 488 ~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (607)
...++..+...+|.|.. .+ ..+.|+|||+|+| +.++++.... ......+++..||.|+. ++
T Consensus 57 ~~~~~~~~~~~~y~p~~-~~--~~~~p~vly~HGG--------g~~~g~~~~~---~~~~~~~~~~~g~~vv~-vd---- 117 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR-KA--AATAPVVLYLHGG--------GWVLGSLRTH---DALVARLAAAAGAVVVS-VD---- 117 (312)
T ss_pred cCCCCCceeEEEECCCC-CC--CCCCcEEEEEeCC--------eeeecChhhh---HHHHHHHHHHcCCEEEe-cC----
Confidence 44566678899999921 22 2245999999975 2233333221 01224688889999998 43
Q ss_pred ccCCCCchhhHHHHhhcHHHHHHHHHHhcc---cccccc
Q 007338 568 GEGLWSNWFQVQRLLLKKLFDVEWLIQAEL---LLEDTL 603 (607)
Q Consensus 568 g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 603 (607)
|-.-+...| ...+.|+.+++.||.+..- +|.+++
T Consensus 118 -YrlaPe~~~-p~~~~d~~~a~~~l~~~~~~~g~dp~~i 154 (312)
T COG0657 118 -YRLAPEHPF-PAALEDAYAAYRWLRANAAELGIDPSRI 154 (312)
T ss_pred -CCCCCCCCC-CchHHHHHHHHHHHHhhhHhhCCCccce
Confidence 222222234 3446779999999998853 366654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.45 Score=46.93 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=42.5
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEE-EEECCCCceeecccCCCccccccccceEEec
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVW-IADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~-v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
.|.-.+|.- ...+.++..+|||||.+|.- .+. +....|| .-..-+.+ +.++ ..+. +....|+|
T Consensus 227 tg~~~pL~~-~glgg~slLkwSPdgd~lfa-At~-------davfrlw~e~q~wt~e-rw~l--gsgr----vqtacWsp 290 (445)
T KOG2139|consen 227 TGQKIPLIP-KGLGGFSLLKWSPDGDVLFA-ATC-------DAVFRLWQENQSWTKE-RWIL--GSGR----VQTACWSP 290 (445)
T ss_pred CCCcccccc-cCCCceeeEEEcCCCCEEEE-ecc-------cceeeeehhcccceec-ceec--cCCc----eeeeeecC
Confidence 565666652 13336889999999998644 443 5566777 22222333 3333 2222 56788999
Q ss_pred CCeEEEEE
Q 007338 97 NSTLLIFT 104 (607)
Q Consensus 97 d~~~l~~~ 104 (607)
+|+.+.++
T Consensus 291 cGsfLLf~ 298 (445)
T KOG2139|consen 291 CGSFLLFA 298 (445)
T ss_pred CCCEEEEE
Confidence 98865554
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.15 Score=52.34 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.+...+.++||.+|.+....|.+-+ +.|+||++|+- ++...+. .....+.|+++||.|+.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~~-----~~~~iv~lHG~------------~~~~~~~--~~~~~~~l~~~g~~v~~- 120 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENSR-----PKAAVCFCHGY------------GDTCTFF--FEGIARKIASSGYGVFA- 120 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCCC-----CCeEEEEECCC------------CCccchH--HHHHHHHHHhCCCEEEE-
Confidence 3444566789999999999997421 33888988742 1111110 01124578889999998
Q ss_pred CCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 562 PSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 562 ~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+-+ |.. ....-...+++|+.+.+++|..+
T Consensus 121 ~D~~G~--G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~ 156 (349)
T PLN02385 121 MDYPGF--GLSEGLHGYIPSFDDLVDDVIEHYSKIKGN 156 (349)
T ss_pred ecCCCC--CCCCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 666443 332 11112256677888777777543
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.14 Score=50.55 Aligned_cols=85 Identities=9% Similarity=-0.067 Sum_probs=51.1
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
|.++||..|.+.++.|.. . +.|+|++.||-. .....| ....+.|+++||.|+. .+.|-
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~--~~~~v~llHG~~-----------~~~~~~----~~~~~~l~~~g~~via-~D~~G 62 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----Y--PKALVFISHGAG-----------EHSGRY----EELAENISSLGILVFS-HDHIG 62 (276)
T ss_pred eecCCCCEEEEEeccCCC----C--CCEEEEEeCCCc-----------cccchH----HHHHHHHHhCCCEEEE-ccCCC
Confidence 557799999999999952 1 227888777420 011111 1235789999999998 66644
Q ss_pred ecc--CCCC-chhhHHHHhhcHHHHHHHHHH
Q 007338 567 IGE--GLWS-NWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 567 ~g~--g~~~-~~~~~~~~~~~~~~~v~~~~~ 594 (607)
+|. +... -+.| ...++|++..++.+.+
T Consensus 63 ~G~S~~~~~~~~~~-~~~~~d~~~~l~~~~~ 92 (276)
T PHA02857 63 HGRSNGEKMMIDDF-GVYVRDVVQHVVTIKS 92 (276)
T ss_pred CCCCCCccCCcCCH-HHHHHHHHHHHHHHHh
Confidence 431 1111 1233 3446778777777654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.34 Score=47.13 Aligned_cols=109 Identities=12% Similarity=0.198 Sum_probs=69.5
Q ss_pred eeeecCCCCC-cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC-e
Q 007338 22 KEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS-T 99 (607)
Q Consensus 22 ~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~-~ 99 (607)
|+.|.+++-. .+...+||+|..++|-... ..-+.||++|+..-+...+..-.+ .+..+.|.|.. +
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd--------~~PnalW~Wdlq~l~l~avLiQk~-----piraf~WdP~~pr 375 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRND--------KYPNALWLWDLQNLKLHAVLIQKH-----PIRAFEWDPGRPR 375 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecC--------CCCceEEEEechhhhhhhhhhhcc-----ceeEEEeCCCCce
Confidence 3445444332 4778999999988765432 455899999998766543322222 16789999984 5
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCC-ce
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VY 177 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~-~~ 177 (607)
+++.+ | ..+||...++| -...+..++ .+
T Consensus 376 L~vct-------------------------g-------------------------~srLY~W~psg~~~V~vP~~GF~i 405 (447)
T KOG4497|consen 376 LVVCT-------------------------G-------------------------KSRLYFWAPSGPRVVGVPKKGFNI 405 (447)
T ss_pred EEEEc-------------------------C-------------------------CceEEEEcCCCceEEecCCCCcee
Confidence 65553 1 24566666666 233333334 35
Q ss_pred eeeeeCCCCceEEEEE
Q 007338 178 TAVEPSPDQKYVLITS 193 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~ 193 (607)
..+.|.-+|..|+...
T Consensus 406 ~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCG 421 (447)
T ss_pred eeEEecCCCcEEEEEc
Confidence 6889999999988774
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.2 Score=44.62 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCeeecCCCCceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCc
Q 007338 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (607)
Q Consensus 157 ~~l~~~~~~g~~~~lt~~~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (607)
.+||...-..-+.-+....+++-++|.| |.+|++--+. ..++.+|++...++-.-+++
T Consensus 392 VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL-------------D~KvRiWsI~d~~Vv~W~Dl-------- 450 (712)
T KOG0283|consen 392 VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL-------------DGKVRLWSISDKKVVDWNDL-------- 450 (712)
T ss_pred EEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc-------------ccceEEeecCcCeeEeehhh--------
Confidence 4555443222244445567888999999 4555554432 24788899887765544331
Q ss_pred ccccccCCCCcceeecCCCce
Q 007338 236 CYNSVREGMRSISWRADKPST 256 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~ 256 (607)
..=+..+.++|||++.
T Consensus 451 -----~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 451 -----RDLITAVCYSPDGKGA 466 (712)
T ss_pred -----hhhheeEEeccCCceE
Confidence 1112358999999953
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.97 E-value=6.4 Score=38.17 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=40.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|+|||..+|-.. ...+|++|++-+-.. -.+.-++. .+..+.|..|+..++..
T Consensus 49 eI~~~~F~P~gs~~aSgG----------~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG----------SDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSC 108 (338)
T ss_pred eEEEEEECCCCCeEeecC----------CcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEe
Confidence 578899999999876543 347899999876433 23322222 26688999999888875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.8 Score=42.12 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=44.7
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (607)
+.|.|+.. -+-.+.++.... .+...+||+||+.|.-++. ...+-++|+..|.+.+-..+..
T Consensus 47 vvI~D~~T---~~iar~lsaH~~--pi~sl~WS~dgr~LltsS~----------D~si~lwDl~~gs~l~rirf~s---- 107 (405)
T KOG1273|consen 47 VVIYDFDT---FRIARMLSAHVR--PITSLCWSRDGRKLLTSSR----------DWSIKLWDLLKGSPLKRIRFDS---- 107 (405)
T ss_pred EEEEEccc---cchhhhhhcccc--ceeEEEecCCCCEeeeecC----------CceeEEEeccCCCceeEEEccC----
Confidence 56777651 233444543322 5889999999999876653 2577888998887532222222
Q ss_pred ccccceEEecCC
Q 007338 87 AVFGSFVWVNNS 98 (607)
Q Consensus 87 ~~~~~~~Wspd~ 98 (607)
.+-..+|.|-+
T Consensus 108 -pv~~~q~hp~k 118 (405)
T KOG1273|consen 108 -PVWGAQWHPRK 118 (405)
T ss_pred -ccceeeecccc
Confidence 14467888753
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.21 Score=54.16 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC--eEEEeCCCCc--eeccC
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR--FAVLAGPSIP--IIGEG 570 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G--Y~Vl~~~~~~--~~g~g 570 (607)
+.-.++.|.+..+++ ++|||||+|+|.|.. |+...+ ....|++++ ++|+. .+.+ ..|..
T Consensus 79 l~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~--------g~~~~~------~~~~~~~~~~~~~vv~-~~yRlg~~g~~ 141 (493)
T cd00312 79 LYLNVYTPKNTKPGN--SLPVMVWIHGGGFMF--------GSGSLY------PGDGLAREGDNVIVVS-INYRLGVLGFL 141 (493)
T ss_pred CeEEEEeCCCCCCCC--CCCEEEEEcCCcccc--------CCCCCC------ChHHHHhcCCCEEEEE-ecccccccccc
Confidence 555777888755444 459999999764432 222111 234555553 88887 3321 12222
Q ss_pred CCCc-hhhHHHHhhcHHHHHHHHHHh----cccccccc
Q 007338 571 LWSN-WFQVQRLLLKKLFDVEWLIQA----ELLLEDTL 603 (607)
Q Consensus 571 ~~~~-~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~ 603 (607)
.... ..-+-.-+.|++.|++|+.+. | .|+++|
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fg-gd~~~v 178 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFG-GDPDSV 178 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhC-CCcceE
Confidence 1110 011122367899999998765 4 466654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=93.74 E-value=17 Score=42.38 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=56.7
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcCCCcEEEEEEeccccce
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQT 324 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 324 (607)
.++|+-||+. +-+...+.... .+..+.+++. .| +.....+ .++-...++|.|.|..|+.... ..+..
T Consensus 214 ~ISWRGDG~y--FAVss~~~~~~-----~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~ 281 (928)
T PF04762_consen 214 RISWRGDGEY--FAVSSVEPETG-----SRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRH 281 (928)
T ss_pred EEEECCCCcE--EEEEEEEcCCC-----ceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCc
Confidence 4999999983 11222211110 1344555553 22 2221111 2233567899999987776543 22334
Q ss_pred EEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEe
Q 007338 325 RTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (607)
Q Consensus 325 ~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~ 384 (607)
.+..+.-.|- .... |...... .......+.|+.|+..+++...+ ..+||..
T Consensus 282 ~VvFfErNGL--rhge-F~l~~~~--~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~ 332 (928)
T PF04762_consen 282 DVVFFERNGL--RHGE-FTLRFDP--EEEKVIELAWNSDSEILAVWLED----RVQLWTR 332 (928)
T ss_pred EEEEEecCCc--Eeee-EecCCCC--CCceeeEEEECCCCCEEEEEecC----CceEEEe
Confidence 5555554441 1111 1111000 00000128999999988776643 4556643
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.45 E-value=9 Score=38.18 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=39.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLF 78 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt 78 (607)
.+|+-++. +.+..+.+.+ .....+.-.++|||++|+-... ...|.+|++++|++. .++
T Consensus 171 svWmw~ip---~~~~~kv~~G--h~~~ct~G~f~pdGKr~~tgy~----------dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 171 SVWMWQIP---SQALCKVMSG--HNSPCTCGEFIPDGKRILTGYD----------DGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred cEEEEECC---CcceeeEecC--CCCCcccccccCCCceEEEEec----------CceEEEEecCCCceeEEec
Confidence 47888875 2344544443 2225788899999999877654 357888999999764 443
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.15 Score=48.17 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred EEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEEeCCCCceec--cCCC
Q 007338 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIG--EGLW 572 (607)
Q Consensus 496 ~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl~~~~~~~~g--~g~~ 572 (607)
...||.|++...+ ++|+||..|+.. +.+..|.... . ++-+| ++||+|+. |.-.... .+-+
T Consensus 2 ~Y~lYvP~~~~~~---~~PLVv~LHG~~-----------~~a~~~~~~s-~-~~~lAd~~Gfivvy-P~~~~~~~~~~cw 64 (220)
T PF10503_consen 2 SYRLYVPPGAPRG---PVPLVVVLHGCG-----------QSAEDFAAGS-G-WNALADREGFIVVY-PEQSRRANPQGCW 64 (220)
T ss_pred cEEEecCCCCCCC---CCCEEEEeCCCC-----------CCHHHHHhhc-C-HHHHhhcCCeEEEc-ccccccCCCCCcc
Confidence 4679999986532 469999988641 1112222111 1 23445 45999998 4322111 1111
Q ss_pred ----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 573 ----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 573 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
............+...|++|+++--+|.+||.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVy 100 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVY 100 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCcee
Confidence 01111123345677889999999999999974
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.12 Score=49.04 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccC---C
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG---L 571 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g---~ 571 (607)
|+++|.+|.+- + |.|+||.+|.- .|.+. ........||++||.|+. |+. ..|.+ .
T Consensus 1 ~~ay~~~P~~~--~---~~~~Vvv~~d~------------~G~~~---~~~~~ad~lA~~Gy~v~~-pD~-f~~~~~~~~ 58 (218)
T PF01738_consen 1 IDAYVARPEGG--G---PRPAVVVIHDI------------FGLNP---NIRDLADRLAEEGYVVLA-PDL-FGGRGAPPS 58 (218)
T ss_dssp EEEEEEEETTS--S---SEEEEEEE-BT------------TBS-H---HHHHHHHHHHHTT-EEEE-E-C-CCCTS--CC
T ss_pred CeEEEEeCCCC--C---CCCEEEEEcCC------------CCCch---HHHHHHHHHHhcCCCEEe-ccc-ccCCCCCcc
Confidence 68999999863 1 34999987731 11110 001125689999999998 553 12333 1
Q ss_pred C--Cchhh--------HHHHhhcHHHHHHHHHHhcccccccc
Q 007338 572 W--SNWFQ--------VQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 572 ~--~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. -.... ......++.++|++|.++.-++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~ki 100 (218)
T PF01738_consen 59 DPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKI 100 (218)
T ss_dssp CHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred chhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcE
Confidence 1 01111 23567788999999999997777665
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=92.99 E-value=5.2 Score=46.56 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=33.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA 69 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~ 69 (607)
+|.+....++....+..-+..... .+...+||||+..||++.. ..+|.+|..
T Consensus 98 di~~~~~~~~~~~~~~E~VG~vd~--GI~a~~WSPD~Ella~vT~----------~~~l~~mt~ 149 (928)
T PF04762_consen 98 DIILVREDPDPDEDEIEIVGSVDS--GILAASWSPDEELLALVTG----------EGNLLLMTR 149 (928)
T ss_pred eEEEEEccCCCCCceeEEEEEEcC--cEEEEEECCCcCEEEEEeC----------CCEEEEEec
Confidence 455553333333445555554433 5999999999999999863 357777753
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=6 Score=38.78 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
....-.|||||.-|...+. +..-++|-++.+.
T Consensus 51 f~kgckWSPDGSciL~~se--------dn~l~~~nlP~dl 82 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSE--------DNCLNCWNLPFDL 82 (406)
T ss_pred hhccceeCCCCceEEeecc--------cCeeeEEecChhh
Confidence 3456799999999887764 4566777665543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.8 Score=45.98 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec
Q 007338 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~ 106 (607)
.+.+..++....|+||..|.-.+ + ...|-++|+.+.++++......-...-......||||++++..
T Consensus 338 v~~gg~vtSl~ls~~g~~lLsss-R---------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA--- 404 (459)
T KOG0288|consen 338 VPLGGRVTSLDLSMDGLELLSSS-R---------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA--- 404 (459)
T ss_pred eecCcceeeEeeccCCeEEeeec-C---------CCceeeeecccccEEEEeeccccccccccceeEECCCCceeee---
Confidence 35555799999999999987663 3 2577888999998887754432110011345677788776654
Q ss_pred CCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-cC---CCCceeeee
Q 007338 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG---TPAVYTAVE 181 (607)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-lt---~~~~~~~~~ 181 (607)
|. ..+.||++++ +|+... |. .+..+..++
T Consensus 405 -----------------------GS-----------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 405 -----------------------GS-----------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred -----------------------cc-----------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 11 1246777777 666544 32 222467899
Q ss_pred eCCCCceEEEEE
Q 007338 182 PSPDQKYVLITS 193 (607)
Q Consensus 182 ~SpDg~~i~~~~ 193 (607)
|+|-|++++-..
T Consensus 439 W~~sG~~Llsad 450 (459)
T KOG0288|consen 439 WNPSGSGLLSAD 450 (459)
T ss_pred EcCCCchhhccc
Confidence 999999998664
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.18 Score=48.57 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=41.0
Q ss_pred EEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchhh
Q 007338 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQ 577 (607)
Q Consensus 498 ~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~ 577 (607)
.++.|.. ++ .| |+||+.|+- .-...+ +..-.+-+|++||+|+. ++........
T Consensus 7 ~v~~P~~--~g-~y--PVv~f~~G~------------~~~~s~---Ys~ll~hvAShGyIVV~-~d~~~~~~~~------ 59 (259)
T PF12740_consen 7 LVYYPSS--AG-TY--PVVLFLHGF------------LLINSW---YSQLLEHVASHGYIVVA-PDLYSIGGPD------ 59 (259)
T ss_pred EEEecCC--CC-Cc--CEEEEeCCc------------CCCHHH---HHHHHHHHHhCceEEEE-ecccccCCCC------
Confidence 5678875 22 46 999997741 111111 12236789999999999 5532221111
Q ss_pred HHHHhhcHHHHHHHHHH
Q 007338 578 VQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 578 ~~~~~~~~~~~v~~~~~ 594 (607)
....+.+...-++||.+
T Consensus 60 ~~~~~~~~~~vi~Wl~~ 76 (259)
T PF12740_consen 60 DTDEVASAAEVIDWLAK 76 (259)
T ss_pred cchhHHHHHHHHHHHHh
Confidence 13346666777888777
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=9.5 Score=36.54 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=37.5
Q ss_pred cccceEEccC-CCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
++-...|.|- |. |+++.. ....|.++++.++.. .-.|-..+ .....+..++|+|.+++|...
T Consensus 16 r~W~~awhp~~g~-ilAscg---------~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 16 RVWSVAWHPGKGV-ILASCG---------TDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred cEEEEEeccCCce-EEEeec---------CCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEEEEe
Confidence 4778899998 76 444442 235677777775332 11111122 122346799999999988775
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.38 Score=48.37 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=44.0
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCC
Q 007338 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLW 572 (607)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~ 572 (607)
..+++++++|.. +++| |+||+.|+. +....+ +......|+++||.|+. ++.+. .+..
T Consensus 37 ~~~p~~v~~P~~---~g~~--PvVv~lHG~------------~~~~~~---y~~l~~~Las~G~~Vva-pD~~g--~~~~ 93 (313)
T PLN00021 37 PPKPLLVATPSE---AGTY--PVLLFLHGY------------LLYNSF---YSQLLQHIASHGFIVVA-PQLYT--LAGP 93 (313)
T ss_pred CCceEEEEeCCC---CCCC--CEEEEECCC------------CCCccc---HHHHHHHHHhCCCEEEE-ecCCC--cCCC
Confidence 579999999974 2344 999998853 111111 11224688999999998 55432 2111
Q ss_pred CchhhHHHHhhcHHHHHHHHHH
Q 007338 573 SNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 573 ~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
.. .....++.+.++||.+
T Consensus 94 ~~----~~~i~d~~~~~~~l~~ 111 (313)
T PLN00021 94 DG----TDEIKDAAAVINWLSS 111 (313)
T ss_pred Cc----hhhHHHHHHHHHHHHh
Confidence 11 1223456667777764
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.26 Score=50.02 Aligned_cols=94 Identities=15% Similarity=0.009 Sum_probs=50.7
Q ss_pred ceEEEEEECCCCceEEEEEE-cCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLY-LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~-~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.-.++..||..|.-... .|.. .+ +.|+||++|+- .++... .......+.|+++||.|+
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~~-~~----~~p~vll~HG~-----------~g~~~~--~~~~~~~~~l~~~G~~v~ 91 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPAQ-AR----HKPRLVLFHGL-----------EGSFNS--PYAHGLLEAAQKRGWLGV 91 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCcc-CC----CCCEEEEeCCC-----------CCCCcC--HHHHHHHHHHHHCCCEEE
Confidence 33444567789987754433 2322 21 23888887742 011111 000112468899999999
Q ss_pred eCCCCceeccCCCCc---hhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSN---WFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~---~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. .+. +|.|+.+. +.+......|+.+.+++|.++
T Consensus 92 ~-~d~--rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 127 (324)
T PRK10985 92 V-MHF--RGCSGEPNRLHRIYHSGETEDARFFLRWLQRE 127 (324)
T ss_pred E-EeC--CCCCCCccCCcceECCCchHHHHHHHHHHHHh
Confidence 8 443 45444322 112122367888888888875
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.48 Score=49.47 Aligned_cols=91 Identities=10% Similarity=-0.041 Sum_probs=55.8
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.....+...+|..+...++.|..-+ +.|+||++|+.. +....| ......|+++||.|+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~-----~~~~Vl~lHG~~-----------~~~~~~----~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGE-----MRGILIIIHGLN-----------EHSGRY----LHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCC-----CceEEEEECCch-----------HHHHHH----HHHHHHHHHCCCEEEE-
Confidence 4556778889999999999996312 237888887520 101011 1224688999999998
Q ss_pred CCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 562 PSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 562 ~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+ |.|.. ...........|+...+++|..+
T Consensus 169 ~D~r--GhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~ 204 (395)
T PLN02652 169 MDWI--GHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSE 204 (395)
T ss_pred eCCC--CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 5553 33332 11123345567777777777643
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.4 Score=48.82 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=54.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..|...|...||.+|+...+.|. ++ + |+||.+|+- . .....+......|+++||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~--~~-~----~~vll~HG~--------------~-~~~~~y~~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAP--HH-D----RVVVICPGR--------------I-ESYVKYAELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCC--CC-C----cEEEEECCc--------------c-chHHHHHHHHHHHHHCCCeEEE
Confidence 56778888899999999998875 21 2 667776642 1 1010111123578899999998
Q ss_pred CCCCceec-cCCCCch------hhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIG-EGLWSNW------FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g-~g~~~~~------~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+-.| +...... .-....++|+...++.++..
T Consensus 87 -~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 127 (330)
T PRK10749 87 -IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP 127 (330)
T ss_pred -EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc
Confidence 6654333 1111110 12256666777777766544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.54 E-value=8.5 Score=42.05 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=41.7
Q ss_pred CcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccce
Q 007338 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (607)
Q Consensus 245 ~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 324 (607)
-.++.||||+.. -+. ..+..-++|.+|-..+ -..|-.+...+..+..|||++.++..+. +.+-
T Consensus 512 L~v~~Spdgk~L--aVs---------LLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSA--DKnV 574 (888)
T KOG0306|consen 512 LCVSVSPDGKLL--AVS---------LLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSA--DKNV 574 (888)
T ss_pred EEEEEcCCCcEE--EEE---------eccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccC--CCce
Confidence 358999999932 111 1233345555542000 0122234556778899999998887653 2346
Q ss_pred EEEEEcCCC
Q 007338 325 RTWLVCPGS 333 (607)
Q Consensus 325 ~l~~~dl~~ 333 (607)
.+|=.|...
T Consensus 575 KiWGLdFGD 583 (888)
T KOG0306|consen 575 KIWGLDFGD 583 (888)
T ss_pred EEeccccch
Confidence 788777655
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.61 Score=43.88 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=46.8
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCch---hHHHhccCeEEEeCCC
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS---SLIFLARRFAVLAGPS 563 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~---~q~la~~GY~Vl~~~~ 563 (607)
..-.||++|.-|=..|..-.+ ++. |.||.- | +|...+.++ ..||+++||.|+.--+
T Consensus 7 i~~~~~~~I~vwet~P~~~~~-~~~--~tiliA-~-----------------Gf~rrmdh~agLA~YL~~NGFhViRyDs 65 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEP-KRN--NTILIA-P-----------------GFARRMDHFAGLAEYLSANGFHVIRYDS 65 (294)
T ss_dssp EEETTTEEEEEEEE---TTS----S---EEEEE-------------------TT-GGGGGGHHHHHHHHTTT--EEEE--
T ss_pred eEcCCCCEEEEeccCCCCCCc-ccC--CeEEEe-c-----------------chhHHHHHHHHHHHHHhhCCeEEEeccc
Confidence 344699999999999998555 334 777642 1 222222232 4599999999997344
Q ss_pred Cceec-cCCCCchhhHHHHhhcHHHHHHHHHHhcc
Q 007338 564 IPIIG-EGLWSNWFQVQRLLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 564 ~~~~g-~g~~~~~~~~~~~~~~~~~~v~~~~~~~~ 597 (607)
...+| +-++..+.-+.....+++..++||-++|.
T Consensus 66 l~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~ 100 (294)
T PF02273_consen 66 LNHVGLSSGDINEFTMSIGKASLLTVIDWLATRGI 100 (294)
T ss_dssp -B-------------HHHHHHHHHHHHHHHHHTT-
T ss_pred cccccCCCCChhhcchHHhHHHHHHHHHHHHhcCC
Confidence 44556 33336777778889999999999998876
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.43 Score=49.74 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=48.4
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC-eEEEeCCCCcee
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPII 567 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G-Y~Vl~~~~~~~~ 567 (607)
+.|.+.+ -|+.|. ..+ + ++||+||+|+|-|..|. +. .+ ....+.||++| .+|+. .|.+ -
T Consensus 76 sEDCL~L--NIwaP~-~~a-~--~~PVmV~IHGG~y~~Gs------~s-----~~-~ydgs~La~~g~vVvVS-vNYR-L 135 (491)
T COG2272 76 SEDCLYL--NIWAPE-VPA-E--KLPVMVYIHGGGYIMGS------GS-----EP-LYDGSALAARGDVVVVS-VNYR-L 135 (491)
T ss_pred cccceeE--EeeccC-CCC-C--CCcEEEEEeccccccCC------Cc-----cc-ccChHHHHhcCCEEEEE-eCcc-c
Confidence 3455444 456788 222 2 46999999988766442 11 11 12358999999 88887 3311 1
Q ss_pred c-cCC----CCc--hhhH-HHHhhcHHHHHHHHHH
Q 007338 568 G-EGL----WSN--WFQV-QRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 568 g-~g~----~~~--~~~~-~~~~~~~~~~v~~~~~ 594 (607)
| .|- ... +.+. -.-+.|++.|++|+-+
T Consensus 136 G~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~ 170 (491)
T COG2272 136 GALGFLDLSSLDTEDAFASNLGLLDQILALKWVRD 170 (491)
T ss_pred ccceeeehhhccccccccccccHHHHHHHHHHHHH
Confidence 2 121 111 1111 1237799999999865
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.48 Score=49.15 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=35.8
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
.+..+.|||||++|+.++.+ .-|.++|..+.+..-+.. +...+--.+.||||||.
T Consensus 292 ~in~f~FS~DG~~LA~VSqD-------------GfLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD-------------GFLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cccceeEcCCCceEEEEecC-------------ceEEEeeccHHHHHHHHH------------hhccceEEEEEcCCccE
Confidence 45689999999999999742 246667766654333321 11122234999999993
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=4.3 Score=44.13 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=75.2
Q ss_pred eEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEec-CCCCC-C
Q 007338 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRD-P 112 (607)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~-~~~~~-~ 112 (607)
.-++|||+.+.-. . +..+-+-++|.++.+.. ++. ... ......+++|++++|++.. .+... +
T Consensus 198 ~PlpnDGk~l~~~-~--------ey~~~vSvID~etmeV~~qV~-Vdg-----npd~v~~spdGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 198 IPLPNDGKDLDDP-K--------KYRSLFTAVDAETMEVAWQVM-VDG-----NLDNVDTDYDGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred cccCCCCCEeecc-c--------ceeEEEEEEECccceEEEEEE-eCC-----CcccceECCCCCEEEEeccCcccCcce
Confidence 3457788765222 1 45677888899987653 331 122 1457789999998888742 11111 0
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-C----C-C-eeecCCCCceeeeeeCCC
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-T-AKDFGTPAVYTAVEPSPD 185 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~----g-~-~~~lt~~~~~~~~~~SpD 185 (607)
.....-.....+..+ ........ .++ .+.+....++.++|. + + + ...|..+..-..+.+|||
T Consensus 263 ~em~a~e~d~~vvfn-------i~~iea~v---kdG-K~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 263 AEMMAAERDWVVVFN-------IARIEEAV---KAG-KFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred eeeccccCceEEEEc-------hHHHHHhh---hCC-CEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 000000000011000 00000101 111 122223456888887 4 2 2 233444555678999999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
|++++.+.... ..+-++|++.-
T Consensus 332 GkylyVanklS------------~tVSVIDv~k~ 353 (635)
T PRK02888 332 GKYFIANGKLS------------PTVTVIDVRKL 353 (635)
T ss_pred CCEEEEeCCCC------------CcEEEEEChhh
Confidence 99999885432 35777777653
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=91.47 E-value=6.6 Score=40.73 Aligned_cols=182 Identities=12% Similarity=0.126 Sum_probs=101.5
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee---ecccCCCccccccccceEEecCCeEEEEEe
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~---~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
...+++.-.++|||+.|+.-. ....|-+||++.-.++ +||...-.| -.++.+||.++.|...
T Consensus 464 rdnyiRSckL~pdgrtLivGG----------eastlsiWDLAapTprikaeltssapaC-----yALa~spDakvcFscc 528 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGG----------EASTLSIWDLAAPTPRIKAELTSSAPAC-----YALAISPDAKVCFSCC 528 (705)
T ss_pred cccceeeeEecCCCceEEecc----------ccceeeeeeccCCCcchhhhcCCcchhh-----hhhhcCCccceeeeec
Confidence 444788899999999987643 2477888899876553 333111111 1567789988877642
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCC-CCceeeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-PAVYTAVEP 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~-~~~~~~~~~ 182 (607)
. .+.|.++|+ +. .++++-. .+...-+.+
T Consensus 529 s-------------------------------------------------dGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 529 S-------------------------------------------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred c-------------------------------------------------CCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 1 134555666 33 3555532 234567899
Q ss_pred CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEe
Q 007338 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (607)
|+||.+|.--.. ...|.-||+..+ +++..-. | .-.+.++...|.+.+.++=+
T Consensus 560 s~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhd--------F---~SQIfSLg~cP~~dWlavGM-- 611 (705)
T KOG0639|consen 560 SKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHD--------F---SSQIFSLGYCPTGDWLAVGM-- 611 (705)
T ss_pred cCCCceeecCCC-------------ccceeehhhhhh--hhhhhhh--------h---hhhheecccCCCccceeeec--
Confidence 999998864422 235777888655 2221100 0 01123466677777321111
Q ss_pred ecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEE
Q 007338 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~ 316 (607)
.++ .+.++- ..+.+...|...+..+-.+-|++=|+.|+..
T Consensus 612 -ens----------~vevlh---~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 612 -ENS----------NVEVLH---TSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred -ccC----------cEEEEe---cCCccceeecccccEEEEEEecccCceeeec
Confidence 111 111111 1221333455555566678888889887764
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.91 Score=50.91 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=52.8
Q ss_pred eEEeccCCCCCCCCceee-eecCcccceeeEcCCCcEEEEEEeccc--cceEEEEEcCCCCCCCceEeeeccccccccCC
Q 007338 277 IIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKT--SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP 353 (607)
Q Consensus 277 ~~~~~~~~~~~g~~~~~l-~~~~~~~~~~~ws~Dg~~l~~~~~~~~--~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~ 353 (607)
.|.+.| .+|..++.+ ......+..|.|||||+.|+|....+. +...||+.+|.+....+..| +++.+
T Consensus 330 ~L~~~D---~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl---~ve~a---- 399 (912)
T TIGR02171 330 NLAYID---YTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL---PVENA---- 399 (912)
T ss_pred eEEEEe---cCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe---ecccc----
Confidence 455555 355455555 455566778999999999988544544 67789999999864333333 22221
Q ss_pred CCCCeeeCCCCCEEEEEeee
Q 007338 354 GSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 354 ~~~~~~~~~dg~~~~~~~~~ 373 (607)
..+.++..+.|..+++...+
T Consensus 400 aiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred cccceEecCCCCeEEEEEcC
Confidence 11224446777765544433
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.2 Score=43.25 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=43.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC---CCceeecccCCCcc--ccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~---~g~~~~lt~~~~~~--~~~~~~~~~Wspd~~~l~~~ 104 (607)
.++..++||||.++|++... .+..+||+.-+. .|.+..++...... ....+..+.|.+++++++..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~-------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVED-------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred ceEEEEECCCCcEEEEEEec-------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 68999999999999999875 345778887543 34233443211100 01124588999999988875
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=25 Score=38.34 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=31.5
Q ss_pred eEEEEeC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 158 QLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 158 ~l~~~~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
.|.+.|+ +|+...-.-......+.|.+|++.++|+...... .+.+|+.-.+.+
T Consensus 156 ~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~--------rp~kv~~h~~gt 209 (682)
T COG1770 156 TLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENH--------RPDKVWRHRLGT 209 (682)
T ss_pred EEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCC--------CcceEEEEecCC
Confidence 5566677 6643221111223578999999999999764321 145676665554
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.29 Score=44.27 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=32.0
Q ss_pred hHHHhccCeEEEeCCCCceec-cCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIFLARRFAVLAGPSIPIIG-EGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g-~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
...|..+||+++. +|+..+| +.+++ +.+--.+.|+.++++||-++
T Consensus 53 a~~l~~~G~atlR-fNfRgVG~S~G~f--D~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 53 ARALVKRGFATLR-FNFRGVGRSQGEF--DNGIGELEDAAAALDWLQAR 98 (210)
T ss_pred HHHHHhCCceEEe-ecccccccccCcc--cCCcchHHHHHHHHHHHHhh
Confidence 4588899999998 7775554 22221 23344588999999999876
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.15 E-value=27 Score=38.28 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=38.9
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+||++|++|+-.. .+.|-..|+++++.. +...+..+ .+.+..+..+||+.+++..
T Consensus 24 ~~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTA 80 (775)
T ss_pred ceeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEe
Confidence 389999999986654 356888899999874 43222211 1234577888898777764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.21 Score=51.72 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=39.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+....|||||++||.+++ ++ -|-++|..+.+..-+...=-++ .--+.||||+++|+.
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------DG--fLRvF~fdt~eLlg~mkSYFGG----LLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------DG--FLRIFDFDTQELLGVMKSYFGG----LLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEec--------Cc--eEEEeeccHHHHHHHHHhhccc----eEEEEEcCCccEEEe
Confidence 6888999999999999986 34 5566666666654442110000 236789999999887
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=1 Score=46.39 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=53.0
Q ss_pred CceeeeEEE-eccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 2 PFFTGIGIH-RLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
++.++.|+- |. ++....++. ....+++..++||||..||.-+. ++---||.++..+.+..++-..
T Consensus 424 Gt~~G~w~V~d~----e~~~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~--------d~~iyiy~Vs~~g~~y~r~~k~ 489 (626)
T KOG2106|consen 424 GTATGRWFVLDT----ETQDLVTIH--TDNEQLSVVRYSPDGAFLAVGSH--------DNHIYIYRVSANGRKYSRVGKC 489 (626)
T ss_pred eeccceEEEEec----ccceeEEEE--ecCCceEEEEEcCCCCEEEEecC--------CCeEEEEEECCCCcEEEEeeee
Confidence 455667765 43 244444454 34668999999999999999775 3444455555554444444222
Q ss_pred CCccccccccceEEecCCeEEEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.. ..+..+.||+|++++..
T Consensus 490 ~g----s~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 490 SG----SPITHLDWSSDSQFLVS 508 (626)
T ss_pred cC----ceeEEeeecCCCceEEe
Confidence 21 23568899999988765
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.73 Score=46.52 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=56.1
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCch--hHHHhccCeEEEe
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS--SLIFLARRFAVLA 560 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~--~q~la~~GY~Vl~ 560 (607)
..+.+ .....|..+||+|..-.+.+ .+|+|||+||| +.+.+++. ...++. .++-++.+=+|+.
T Consensus 64 ~dv~~--~~~~~l~vRly~P~~~~~~~--~~p~lvyfHGG--------Gf~~~S~~---~~~y~~~~~~~a~~~~~vvvS 128 (336)
T KOG1515|consen 64 KDVTI--DPFTNLPVRLYRPTSSSSET--KLPVLVYFHGG--------GFCLGSAN---SPAYDSFCTRLAAELNCVVVS 128 (336)
T ss_pred eeeEe--cCCCCeEEEEEcCCCCCccc--CceEEEEEeCC--------ccEeCCCC---CchhHHHHHHHHHHcCeEEEe
Confidence 44444 34457899999998866523 45999999965 22333322 111232 3454667888887
Q ss_pred CCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 561 GPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
++|...+-..+ -...+|+.+|+.|+-++.
T Consensus 129 ------VdYRLAPEh~~-Pa~y~D~~~Al~w~~~~~ 157 (336)
T KOG1515|consen 129 ------VDYRLAPEHPF-PAAYDDGWAALKWVLKNS 157 (336)
T ss_pred ------cCcccCCCCCC-CccchHHHHHHHHHHHhH
Confidence 33433332222 344789999999998874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.74 E-value=9.9 Score=40.95 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=87.6
Q ss_pred CceeeeEEEeccCCCCCCCeeeeecCCCCC-cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
...+.+-|++|++++ .=..+.+...+... ......++-|++.+++.+. ...+|.++++++...+.+-..
T Consensus 400 st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 400 STVSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred eeccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhcc
Confidence 455677888888654 33444454444322 3567889999999877762 246788888877654444221
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
....--..+..+.-|+||.+++... ...+|+
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa~~-------------------------------------------------t~g~I~ 500 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAAIS-------------------------------------------------TRGQIF 500 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEe-------------------------------------------------ccceEE
Confidence 1110011244666777877766531 236888
Q ss_pred EEeC-CCCeeecCC--CCceeeeeeCCC-CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 161 LGSL-DGTAKDFGT--PAVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 161 ~~~~-~g~~~~lt~--~~~~~~~~~SpD-g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
++++ +++.+.|.. +..++...++|. -..|++.... ..++.+|++..+..
T Consensus 501 v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~-------------nQv~efdi~~~~l~ 553 (691)
T KOG2048|consen 501 VYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN-------------NQVFEFDIEARNLT 553 (691)
T ss_pred EEEcccceeecchhccCcceeeeeccccccCcEEEEecC-------------CeEEEEecchhhhh
Confidence 8898 445555431 235567888864 4566666432 36788888544433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.62 E-value=3.3 Score=41.79 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS 98 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~ 98 (607)
.+.+..|||||+.|+++.. ....+|++++|. ...+|..+. +..+..+.|+.|.
T Consensus 188 eV~DL~FS~dgk~lasig~-----------d~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGA-----------DSARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDN 241 (398)
T ss_pred ccccceeCCCCcEEEEecC-----------CceEEEEeccCchhhhcCCccc---chhhhhceecccC
Confidence 5889999999999999863 266777888884 345553221 2235688998664
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.47 E-value=20 Score=36.86 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=36.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
.+-..+.||||++||+.- ....|.+++..+.+.++.+....+ .+..+.|-..
T Consensus 204 eil~~avS~Dgkylatgg----------~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~g 255 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG----------RDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKG 255 (479)
T ss_pred eeEEEEEcCCCcEEEecC----------CCceEEEecCcccchhhccccccc----ceeeeeeecC
Confidence 466789999999998863 235677899999998877533222 2566666544
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.3 Score=50.27 Aligned_cols=47 Identities=21% Similarity=0.079 Sum_probs=31.8
Q ss_pred hhHHHhccCeEEEeCCCCc-eeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 547 SSLIFLARRFAVLAGPSIP-IIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~-~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
..++|+.+||+|+. .+.+ ..++++. ...+..+...|+.++|+||..+
T Consensus 271 ~~~~~~~rGYaVV~-~D~RGtg~SeG~-~~~~~~~E~~D~~~vIeWl~~~ 318 (767)
T PRK05371 271 LNDYFLPRGFAVVY-VSGIGTRGSDGC-PTTGDYQEIESMKAVIDWLNGR 318 (767)
T ss_pred HHHHHHhCCeEEEE-EcCCCCCCCCCc-CccCCHHHHHHHHHHHHHHhhC
Confidence 35899999999997 3331 2222222 1234467789999999999964
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.30 E-value=4 Score=43.51 Aligned_cols=70 Identities=23% Similarity=0.469 Sum_probs=46.9
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.-++.+..+ ++...+|||||++||-+.. ...|.++.+..++. ++..... .+...-..+.|.=|+++
T Consensus 713 ~~~l~gHtd--qIf~~AWSpdGr~~AtVcK----------Dg~~rVy~Prs~e~-pv~Eg~g-pvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 713 YSRLVGHTD--QIFGIAWSPDGRRIATVCK----------DGTLRVYEPRSREQ-PVYEGKG-PVGTRGARILWACDGRI 778 (1012)
T ss_pred hheeccCcC--ceeEEEECCCCcceeeeec----------CceEEEeCCCCCCC-ccccCCC-CccCcceeEEEEecCcE
Confidence 334544444 6899999999999999875 25788889987764 4432222 21111236789989998
Q ss_pred EEEE
Q 007338 101 LIFT 104 (607)
Q Consensus 101 l~~~ 104 (607)
++.+
T Consensus 779 viv~ 782 (1012)
T KOG1445|consen 779 VIVV 782 (1012)
T ss_pred EEEe
Confidence 7775
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.27 E-value=22 Score=35.80 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=28.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
+....++|.||+++++. +. .....+-++|++.++...-.
T Consensus 96 ~~~~~~ls~dgk~~~V~-N~-------TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQ-NF-------TPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp -GGGEEE-TTSSEEEEE-EE-------SSSEEEEEEETTTTEEEEEE
T ss_pred cccceEEccCCcEEEEE-cc-------CCCCeEEEEECCCCceeeee
Confidence 46778999999987554 43 45689999999998865443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.12 E-value=19 Score=35.01 Aligned_cols=58 Identities=22% Similarity=0.086 Sum_probs=34.6
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
-|+|=+...|-+. ...+.... + .+....|++||+.|+-..+ ...++.+|.++|+..+-
T Consensus 70 ~I~LWnv~gdceN--~~~lkgHs-g-AVM~l~~~~d~s~i~S~gt----------Dk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 70 AIVLWNVYGDCEN--FWVLKGHS-G-AVMELHGMRDGSHILSCGT----------DKTVRGWDAETGKRIRK 127 (338)
T ss_pred eEEEEeccccccc--eeeecccc-c-eeEeeeeccCCCEEEEecC----------CceEEEEecccceeeeh
Confidence 4556665432222 22333222 2 5888899999988754432 25788889998876433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.85 E-value=6.9 Score=39.59 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=34.4
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....++++||+.||-... ++.-.+|-++-..-..... ...+.+.++.||||+++|+..
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~t~l~e~------~~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSMLTILEEI------AHHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcchhhhhhH------hhcCccccceeCCCCcEEEEe
Confidence 466788999988877643 4444444433221111111 112237799999999988775
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=89.59 E-value=2.4 Score=44.16 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=56.2
Q ss_pred CCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC--chhHHHhccCe
Q 007338 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP--TSSLIFLARRF 556 (607)
Q Consensus 479 ~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~--~~~q~la~~GY 556 (607)
..+.|...+++.||..|.-.-+.+.+-..+. .+-|+||+.|+-. .+...|..... .-...||++||
T Consensus 41 gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~-~~~~~Vll~HGl~-----------~ss~~w~~~~~~~sla~~La~~Gy 108 (395)
T PLN02872 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLGS-QRGPPVLLQHGLF-----------MAGDAWFLNSPEQSLGFILADHGF 108 (395)
T ss_pred CCCceEEEEECCCCcEEEEEEcCCCCCCCCC-CCCCeEEEeCccc-----------ccccceeecCcccchHHHHHhCCC
Confidence 3488999999999988776666332211111 1126777777531 11112211111 11236899999
Q ss_pred EEEeCCCCcee-ccCCC----Cc-----hhhHHHHhhcHHHHHHHHHHhc
Q 007338 557 AVLAGPSIPII-GEGLW----SN-----WFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 557 ~Vl~~~~~~~~-g~g~~----~~-----~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
.|+..+.+++. +.|.. .. ..|-+....|+.+.|+++.+..
T Consensus 109 dV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~ 158 (395)
T PLN02872 109 DVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT 158 (395)
T ss_pred CcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99983332211 01211 11 1232333579999999997653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.35 E-value=18 Score=39.75 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=36.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC---CCCceeecccCCCc---cccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDI---CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~~---~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+-..+.+||++.++-.+. +..-.+|-+-+ ..|..+++....+. .+.+.+.....|||++++...
T Consensus 456 aIWsi~~~pD~~g~vT~sa--------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA--------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred ceeeeeecCCCCceEEecC--------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 5778899999999776653 34445554322 22333221111110 011224578899999988874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=28 Score=36.71 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCeee-cCC-CCceeeeeeCCCCceEEEEEc
Q 007338 157 AQLVLGSLDGTAKD-FGT-PAVYTAVEPSPDQKYVLITSM 194 (607)
Q Consensus 157 ~~l~~~~~~g~~~~-lt~-~~~~~~~~~SpDg~~i~~~~~ 194 (607)
+.+-++..+|-.+. |.. ...+..++|.|+++.|+|...
T Consensus 126 G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 44555555563222 222 235667999999999999853
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.04 E-value=23 Score=34.39 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=44.6
Q ss_pred EEEeCCC--CeeecCCC---CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 160 VLGSLDG--TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 160 ~~~~~~g--~~~~lt~~---~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
+++|.++ ++..+... .++.--.|||||++|+.+.++- .. ...-|-+||...+ ...+.+.
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf--d~------~rGViGvYd~r~~-fqrvgE~------- 157 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF--DP------NRGVIGVYDAREG-FQRVGEF------- 157 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC--CC------CCceEEEEecccc-cceeccc-------
Confidence 3455533 34444332 2444568999999888776542 11 1235778887733 3333331
Q ss_pred cccccccCCCCcceeecCCCc
Q 007338 235 VCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~ 255 (607)
.....++..+.|.+||.-
T Consensus 158 ---~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 158 ---STHGIGPHEVTLMADGRT 175 (366)
T ss_pred ---ccCCcCcceeEEecCCcE
Confidence 122356678999999983
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.90 E-value=4.3 Score=40.33 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=36.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...+++|--..|+-+.. ....|+++|+.++.+. .++ ..- . -..+.|+| ....|.+
T Consensus 189 ti~svkfNpvETsILas~~---------sDrsIvLyD~R~~~Pl~KVi-~~m-R----TN~IswnP-eafnF~~ 246 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCA---------SDRSIVLYDLRQASPLKKVI-LTM-R----TNTICWNP-EAFNFVA 246 (433)
T ss_pred ceeEEecCCCcchheeeec---------cCCceEEEecccCCccceee-eec-c----ccceecCc-cccceee
Confidence 3677788887777766653 2368999999988763 232 111 1 35789999 4555554
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.89 E-value=8.3 Score=39.05 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=64.9
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
-..++...|.-| |++ +.-.-|+.++.++|+.+.++...++..-....++...+++.++|.-+....
T Consensus 118 LGl~f~~~ggdL-~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~---- 183 (376)
T KOG1520|consen 118 LGIRFDKKGGDL-YVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKY---- 183 (376)
T ss_pred ceEEeccCCCeE-EEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEecccccc----
Confidence 345566666543 333 334668888889999888875544321112235556665555554211000
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCC-ceeeeeeCCCCceEEE
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYVLI 191 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~-~~~~~~~SpDg~~i~~ 191 (607)
..+.+.- ..+.....++|+.+|... .++.|...- ....+++|||+.++++
T Consensus 184 --------------------~~rd~~~--------a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 184 --------------------DRRDFVF--------AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred --------------------chhheEE--------eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEE
Confidence 0000000 001111357899999844 455554432 3358999999999999
Q ss_pred EEcc
Q 007338 192 TSMH 195 (607)
Q Consensus 192 ~~~~ 195 (607)
+...
T Consensus 236 ~Et~ 239 (376)
T KOG1520|consen 236 AETT 239 (376)
T ss_pred Eeec
Confidence 8653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.85 E-value=16 Score=34.70 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=20.6
Q ss_pred CC-CeeecCCCCceeeeeeCCCCceEEEE
Q 007338 165 DG-TAKDFGTPAVYTAVEPSPDQKYVLIT 192 (607)
Q Consensus 165 ~g-~~~~lt~~~~~~~~~~SpDg~~i~~~ 192 (607)
+| .++.|-.+..+.++.+|+||++|.++
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence 55 45556555567789999999988766
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.22 E-value=4.1 Score=40.57 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=44.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+....|||||..||-.+. .+.-|-++.+..|+...=.+..-.+ ..+-++.|+||+++|..+.
T Consensus 175 ~lAalafs~~G~llATASe---------KGTVIRVf~v~~G~kl~eFRRG~~~--~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASE---------KGTVIRVFSVPEGQKLYEFRRGTYP--VSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred ceeEEEECCCCCEEEEecc---------CceEEEEEEcCCccEeeeeeCCcee--eEEEEEEECCCCCeEEEec
Confidence 5889999999999998874 4688999999888642221111111 1245889999999877764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.08 E-value=8.3 Score=39.00 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=38.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+++.+|||....++--+ +.+.|-++|..-.+ +++|. .... .+..+.|.|.+.+++..
T Consensus 182 aIRdlafSpnDskF~t~S----------dDg~ikiWdf~~~kee~vL~-GHgw----dVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCS----------DDGTIKIWDFRMPKEERVLR-GHGW----DVKSVDWHPTKGLIASG 240 (464)
T ss_pred hhheeccCCCCceeEEec----------CCCeEEEEeccCCchhheec-cCCC----CcceeccCCccceeEEc
Confidence 689999999766644333 23566666776554 45663 2222 26789999998888864
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=45 Score=36.51 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=39.7
Q ss_pred CCCeeeeecCCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEe
Q 007338 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (607)
++...++.+.... .....+..|+||+.+|++.. ....||+... ++..+.+..... +..+.|.
T Consensus 328 ~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~---------~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d 391 (573)
T PRK13614 328 NGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNG---------SRTTLYTVSP-GQPARALTSGST------LTRPSFS 391 (573)
T ss_pred CCCcccCCCccCcCcccccceeecCCCceEEEecC---------CCcEEEEecC-CCcceeeecCCC------ccCCccc
Confidence 4444455443322 14678999999999999842 2357887766 345555433221 4567777
Q ss_pred cCC
Q 007338 96 NNS 98 (607)
Q Consensus 96 pd~ 98 (607)
+++
T Consensus 392 ~~g 394 (573)
T PRK13614 392 PQD 394 (573)
T ss_pred CCC
Confidence 666
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.72 E-value=7.6 Score=39.33 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=66.6
Q ss_pred cCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceee
Q 007338 171 FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (607)
Q Consensus 171 lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (607)
+...+.+.++..|+||..|+..+-+ ..+-++|+.+.+++.....+.... .-......+|
T Consensus 338 v~~gg~vtSl~ls~~g~~lLsssRD-------------dtl~viDlRt~eI~~~~sA~g~k~--------asDwtrvvfS 396 (459)
T KOG0288|consen 338 VPLGGRVTSLDLSMDGLELLSSSRD-------------DTLKVIDLRTKEIRQTFSAEGFKC--------ASDWTRVVFS 396 (459)
T ss_pred eecCcceeeEeeccCCeEEeeecCC-------------CceeeeecccccEEEEeecccccc--------ccccceeEEC
Confidence 3334567899999999999877421 257788999988887654221100 0011238899
Q ss_pred cCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCce-eeeec--CcccceeeEcCCCcEEEEE
Q 007338 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKL--DLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~l~~~--~~~~~~~~ws~Dg~~l~~~ 316 (607)
||+. |+.+- .....+++|+. ++| +.. .+... +..+....|+|-|..++..
T Consensus 397 pd~~----YvaAG---------S~dgsv~iW~v--~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 397 PDGS----YVAAG---------SADGSVYIWSV--FTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred CCCc----eeeec---------cCCCcEEEEEc--cCc-eEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 9998 44322 22346788876 555 333 23222 2247788999988876554
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.31 E-value=33 Score=34.84 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=37.9
Q ss_pred ceEEEEeC-CC-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 157 ~~l~~~~~-~g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
..+.++++ +| ....|..+..+.+++|+-||..++-+..+ .+|.+||...+++
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcE
Confidence 35666777 66 45567767777899999999998876432 3788999887743
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.15 E-value=41 Score=35.01 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=34.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCe-EEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNST-LLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~-~l~~ 103 (607)
.+....|+|+++.++.+..- +....+| |+++...+ -++.+.+ .+....|+|... +++.
T Consensus 112 pv~~~~f~~~d~t~l~s~sD-------d~v~k~~--d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSD-------DKVVKYW--DLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVT 171 (487)
T ss_pred ceeEEEecccCCeEEEecCC-------CceEEEE--EcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEe
Confidence 46778999999887666531 3444444 66665542 2333222 366888998755 5444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=87.09 E-value=2.6 Score=43.51 Aligned_cols=165 Identities=10% Similarity=0.074 Sum_probs=85.2
Q ss_pred cceEEEEeCCC--C---eeec---CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccC
Q 007338 156 TAQLVLGSLDG--T---AKDF---GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (607)
Q Consensus 156 ~~~l~~~~~~g--~---~~~l---t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 227 (607)
+.-+-++|+++ . +.+| +...++.+..++|||+.|++-.. .+.|-+||+..-..+.-.++
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-------------astlsiWDLAapTprikael 505 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-------------ASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-------------cceeeeeeccCCCcchhhhc
Confidence 44555667633 2 2233 23346678999999999987642 24788999986654432221
Q ss_pred CCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEc
Q 007338 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (607)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws 307 (607)
+ +.......++.|||.+ |+|.+..++. |.+||. -+-...+.+....-..+.+..|
T Consensus 506 t----------ssapaCyALa~spDak--vcFsccsdGn-----------I~vwDL--hnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 506 T----------SSAPACYALAISPDAK--VCFSCCSDGN-----------IAVWDL--HNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred C----------CcchhhhhhhcCCccc--eeeeeccCCc-----------EEEEEc--ccceeeecccCCCCCceeEEec
Confidence 1 1223445688899987 7777665443 334442 0100112222222234567777
Q ss_pred CCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 308 ~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+||..|.... -.+.+-..|+..+ +.+..+++...+ +.+...|.+..|++.-
T Consensus 561 ~dGtklWTGG----lDntvRcWDlreg----rqlqqhdF~SQI-----fSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 561 KDGTKLWTGG----LDNTVRCWDLREG----RQLQQHDFSSQI-----FSLGYCPTGDWLAVGM 611 (705)
T ss_pred CCCceeecCC----Cccceeehhhhhh----hhhhhhhhhhhh-----eecccCCCccceeeec
Confidence 7776543321 0112222355441 333333333211 1156678888776643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.09 E-value=22 Score=38.45 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEE
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
...+.+..+.|||..|+... ...|+++|+..|.. +.|-.++ +.+-.++||.||+.+..
T Consensus 12 ~hci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHK-----DtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHK-----DTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred ccchheeEECCCCceEEEec-----------CCEEEEEeCCCccccccccccc-----ceEEEEEEccCCceecc
Confidence 33688999999999998765 36899999987754 4443332 23668899999888664
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.06 E-value=3.3 Score=45.58 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=28.7
Q ss_pred CceeEEEEECCCCceeeccc-CCCccccccccceEEecCCeEEEEE
Q 007338 60 CKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 60 ~~~~L~v~d~~~g~~~~lt~-~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+...|.++|..+.+..+... +.+ .+.++.||||||+++.+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISA 594 (910)
T ss_pred CceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEe
Confidence 45789999998776544432 222 26789999999998875
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.04 E-value=17 Score=35.57 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=43.4
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec--ccCCCccccccccceEEecC
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l--t~~~~~~~~~~~~~~~Wspd 97 (607)
+.+++++... .++...|+||.+.|+-+.+ .-.+|.-++++|.-.+.+ +..++ ...+.|.-+
T Consensus 77 ~akpi~g~~~--nvS~LTynp~~rtLFav~n---------~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~ 139 (316)
T COG3204 77 DAKPILGETA--NVSSLTYNPDTRTLFAVTN---------KPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGG 139 (316)
T ss_pred eccccccccc--cccceeeCCCcceEEEecC---------CCceEEEEecCCceEEEecccccCC------hhHeEEecC
Confidence 3445654433 4999999999998755543 346888888876555544 22222 457788877
Q ss_pred CeEEEE
Q 007338 98 STLLIF 103 (607)
Q Consensus 98 ~~~l~~ 103 (607)
+++++.
T Consensus 140 n~fvi~ 145 (316)
T COG3204 140 NQFVIV 145 (316)
T ss_pred CEEEEE
Confidence 776665
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.02 E-value=51 Score=35.98 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=32.1
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~ 98 (607)
...+..|+||+.+|++.. ...|++-... +..+.+..... +..+.|.+++
T Consensus 336 ~~s~avS~dg~~~A~v~~----------~~~l~vg~~~-~~~~~~~~~~~------Lt~PS~d~~g 384 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA----------SGVWSVGDGD-RDAVLLDTRPG------LVAPSLDAQG 384 (557)
T ss_pred cccceEcCCCceEEEEcC----------CceEEEecCC-CcceeeccCCc------cccCcCcCCC
Confidence 378999999999999842 1356665443 45555532221 5678888777
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.66 E-value=51 Score=36.41 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=35.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-----eecccCCCccccccccceEEecCCe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
....+..|+||+.+|++.. ....|++-.+.++.. +.+.... .+..+.|..++.
T Consensus 364 ~~~s~avS~~g~~~A~v~~---------~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g~ 421 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA---------DGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRGD 421 (599)
T ss_pred CccceEEcCCCceEEEEcC---------CCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCCC
Confidence 5678999999999999853 246888877644432 2232211 156788887774
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.58 E-value=6.7 Score=44.79 Aligned_cols=232 Identities=14% Similarity=0.183 Sum_probs=115.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE---EEEEeecCcccccCCCceeEEEEECC----CCceeecc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR---IAFSVRVDEEDNVSSCKLRVWIADAE----TGEAKPLF 78 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~---laf~~~~~~~~~~~~~~~~L~v~d~~----~g~~~~lt 78 (607)
+|+..+..+ +.+..+.+..+....+.....|++-|.. |+..... +| +|-+||++ +++...|.
T Consensus 42 Eifeld~~~--~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e-------dG--~I~ly~p~~~~~~~~~~~la 110 (1049)
T KOG0307|consen 42 EIFELDFSD--ESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE-------DG--NIVLYDPASIIANASEEVLA 110 (1049)
T ss_pred ceeeecccC--ccccccccccccccccceeeeecccCCCccceeecccc-------CC--ceEEecchhhccCcchHHHh
Confidence 455566542 2333456666666667899999999988 2222211 33 55555654 33333332
Q ss_pred cCCCccccccccceEEecCCe-EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccc
Q 007338 79 ESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (607)
Q Consensus 79 ~~~~~~~~~~~~~~~Wspd~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (607)
.... ....+..+.|.+.+. ++.. |. ..+
T Consensus 111 ~~~~--h~G~V~gLDfN~~q~nlLAS--------------------------Ga-----------------------~~g 139 (1049)
T KOG0307|consen 111 TKSK--HTGPVLGLDFNPFQGNLLAS--------------------------GA-----------------------DDG 139 (1049)
T ss_pred hhcc--cCCceeeeeccccCCceeec--------------------------cC-----------------------CCC
Confidence 1111 111244566666544 4432 10 135
Q ss_pred eEEEEeCCCCeeecCC-----CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCC
Q 007338 158 QLVLGSLDGTAKDFGT-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (607)
Q Consensus 158 ~l~~~~~~g~~~~lt~-----~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (607)
+|+++|+....++.+. .+.+..++|...-.+|+.....+ ....+||++.. +++..+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~--~pii~ls---- 201 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKK--KPIIKLS---- 201 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCC--Ccccccc----
Confidence 7777777442222221 23455677876666776554321 25667888755 2332210
Q ss_pred CCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE
Q 007338 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~ 312 (607)
.-+.+.....+.|-||..-.|+ +...+...+ .+-.||. .+.-...+.++.+...+-.+.|++.+-.
T Consensus 202 ----~~~~~~~~S~l~WhP~~aTql~-~As~dd~~P--------viqlWDl-R~assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 202 ----DTPGRMHCSVLAWHPDHATQLL-VASGDDSAP--------VIQLWDL-RFASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ----cCCCccceeeeeeCCCCceeee-eecCCCCCc--------eeEeecc-cccCCchhhhcccccceeeeccCCCCch
Confidence 0001122345999999875443 332222221 2333332 1111122334445555678899987644
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 007338 313 LVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
++..... .++++..+..++
T Consensus 268 lllSsgk---D~~ii~wN~~tg 286 (1049)
T KOG0307|consen 268 LLLSSGK---DNRIICWNPNTG 286 (1049)
T ss_pred hhhcccC---CCCeeEecCCCc
Confidence 3333221 247888888874
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.84 Score=44.16 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccC
Q 007338 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~ 522 (607)
.-|.+|...||-|.+++++||| .|++||.|+.
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky-~PLvlfLHga 200 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKY-YPLVLFLHGA 200 (387)
T ss_pred ccCceeeEEEecccccCCCCcc-ccEEEEEecC
Confidence 3678999999999999999998 7889988853
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.57 E-value=21 Score=35.02 Aligned_cols=54 Identities=7% Similarity=0.203 Sum_probs=37.9
Q ss_pred cceEEEEeCCCC-eeecCCC----CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 156 TAQLVLGSLDGT-AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 156 ~~~l~~~~~~g~-~~~lt~~----~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
...+|++++.|+ ++.++.+ +.+....+||.|.+|+-...+ ..+|-+...+|+..
T Consensus 414 sntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-------------~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 414 SNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-------------GVLYCFSVLSGKLE 472 (508)
T ss_pred CCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-------------cEEEEEEeecCcee
Confidence 467889999885 4556543 345578999999999887532 26788887766544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=85.55 E-value=24 Score=34.07 Aligned_cols=68 Identities=9% Similarity=0.100 Sum_probs=40.1
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
++.|.++.. .++..+|.||.+.|+.+.+ ....|+.++++|.-.+++.-...+. ...+.+..++++
T Consensus 14 ~~~l~g~~~--e~SGLTy~pd~~tLfaV~d---------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~ 78 (248)
T PF06977_consen 14 AKPLPGILD--ELSGLTYNPDTGTLFAVQD---------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRY 78 (248)
T ss_dssp EEE-TT--S---EEEEEEETTTTEEEEEET---------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEE
T ss_pred eeECCCccC--CccccEEcCCCCeEEEEEC---------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEE
Confidence 445554333 3899999999999877764 3578999998744444442111111 457788877776
Q ss_pred EEE
Q 007338 101 LIF 103 (607)
Q Consensus 101 l~~ 103 (607)
++.
T Consensus 79 vl~ 81 (248)
T PF06977_consen 79 VLS 81 (248)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.37 E-value=2.1 Score=46.91 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=44.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
++++..|||||++|+-.+. ...|.+||+.+|...-....+.. ...+.+||++.+|..+
T Consensus 578 ritd~~FS~DgrWlisasm----------D~tIr~wDlpt~~lID~~~vd~~-----~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASM----------DSTIRTWDLPTGTLIDGLLVDSP-----CTSLSFSPNGDFLATV 635 (910)
T ss_pred ceeeeEeCCCCcEEEEeec----------CCcEEEEeccCcceeeeEecCCc-----ceeeEECCCCCEEEEE
Confidence 6999999999999988775 36789999999875432222222 3478899999998876
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=85.18 E-value=2.5 Score=44.09 Aligned_cols=97 Identities=11% Similarity=-0.006 Sum_probs=51.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..++..++..||..+....+.+..-..... -|+||..|+- .|+... .+.......+.++||.|+.
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~~~--~p~vvllHG~-----------~g~s~~--~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALPAD--APVLILLPGL-----------TGGSDD--SYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCCCC--CCEEEEECCC-----------CCCCCC--HHHHHHHHHHHHCCCEEEE
Confidence 445556777899888754433321111111 2888887742 122211 0001123456789999998
Q ss_pred CCCCceeccCCCC---chhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIGEGLWS---NWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g~g~~~---~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
.+. +|.|+.. .+.+.....+|+...+++|..+
T Consensus 135 -~d~--rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~ 169 (388)
T PLN02511 135 -FNS--RGCADSPVTTPQFYSASFTGDLRQVVDHVAGR 169 (388)
T ss_pred -Eec--CCCCCCCCCCcCEEcCCchHHHHHHHHHHHHH
Confidence 544 4444431 1223334467888888888764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.08 E-value=6.7 Score=42.56 Aligned_cols=62 Identities=6% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEE
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...++..+|||+|+++|--.- .-...+-+++++... .-.+.+++-. +...+|+|.+++++..
T Consensus 78 Rk~~t~vAfS~~GryvatGEc--------G~~pa~kVw~la~h~vVAEfvdHKY~-----vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 78 RKPLTCVAFSQNGRYVATGEC--------GRTPASKVWSLAFHGVVAEFVDHKYN-----VTCVAFSPGNKYVVSV 140 (1080)
T ss_pred CcceeEEEEcCCCcEEEeccc--------CCCccceeeeeccccchhhhhhcccc-----ceeeeecCCCcEEEee
Confidence 336889999999999876432 234566777887633 3334333321 4578899999887764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.99 E-value=48 Score=36.75 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=34.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
.+-+..||.++ .|+-.+. +....|| ++...+-..++.+.+ .+..++|.|- .++++.
T Consensus 371 DILDlSWSKn~-fLLSSSM--------DKTVRLW--h~~~~~CL~~F~Hnd-----fVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 371 DILDLSWSKNN-FLLSSSM--------DKTVRLW--HPGRKECLKVFSHND-----FVTCVAFNPVDDRYFIS 427 (712)
T ss_pred hheecccccCC-eeEeccc--------cccEEee--cCCCcceeeEEecCC-----eeEEEEecccCCCcEee
Confidence 36788999777 4444433 4455566 565556556654433 3678899986 555443
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=4.1 Score=42.71 Aligned_cols=95 Identities=12% Similarity=-0.088 Sum_probs=53.3
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeE--
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA-- 557 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~-- 557 (607)
..+.++|.|. -|.+...+||.|++|+ .++| |||++.+++. +.+ ..........|.++|.+
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~--PvlyllDG~~------w~~--------~~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PEER--PLAILLDGQF------WAE--------SMPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CCCC--CEEEEEECHH------hhh--------cCCHHHHHHHHHHcCCCCc
Confidence 4577788775 6778999999999997 3545 9999876431 100 00001123467778833
Q ss_pred --EEeCCCCceeccCCC--CchhhHHHHhhcHHHHHHHH
Q 007338 558 --VLAGPSIPIIGEGLW--SNWFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 558 --Vl~~~~~~~~g~g~~--~~~~~~~~~~~~~~~~v~~~ 592 (607)
|+...+........+ .+..|.+.++++++-.|+.-
T Consensus 242 ~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~ 280 (411)
T PRK10439 242 AVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAI 280 (411)
T ss_pred eEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHh
Confidence 344122111111112 35567677777776666553
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.5 Score=41.34 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=53.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
....--+++.+|.++.....+|.+-. + |.-+|+++|+- |.-..+. +....-.||..||+|+.
T Consensus 26 ~~~~~~~~n~rG~~lft~~W~p~~~~--~--pr~lv~~~HG~------------g~~~s~~--~~~~a~~l~~~g~~v~a 87 (313)
T KOG1455|consen 26 TYSESFFTNPRGAKLFTQSWLPLSGT--E--PRGLVFLCHGY------------GEHSSWR--YQSTAKRLAKSGFAVYA 87 (313)
T ss_pred ceeeeeEEcCCCCEeEEEecccCCCC--C--CceEEEEEcCC------------cccchhh--HHHHHHHHHhCCCeEEE
Confidence 34445667899999999999997522 2 22445544421 1100110 01234689999999997
Q ss_pred CCCCceecc----CCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIGE----GLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g~----g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
-+ ..|- |...+-.-...+++|+..=++.+..+
T Consensus 88 -~D--~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~ 123 (313)
T KOG1455|consen 88 -ID--YEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKER 123 (313)
T ss_pred -ee--ccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhc
Confidence 33 2342 33222222256678888777765554
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.73 E-value=3.8 Score=45.67 Aligned_cols=64 Identities=23% Similarity=0.400 Sum_probs=45.0
Q ss_pred CcccceEEccCCCEEEEEeec-CcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 31 AKINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..++.|..+|+|+.++|+... +.. .......+|+.|... .+.++.... ...+.|+||++++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~ 77 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFL--KPLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFV 77 (620)
T ss_pred hcccCcccCCCCceeEEeecccccc--ccccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEE
Confidence 368899999999999999874 111 125668899987665 333432221 5688999999988875
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=84.73 E-value=1 Score=42.30 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=27.5
Q ss_pred hHHHhc-cCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIFLA-RRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~la~-~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
...+|+ +||+|+. + .+. ..+...+ .+.++|+.++++||++.
T Consensus 21 ~~~la~~~g~~v~~-~---~Yr--l~p~~~~-p~~~~D~~~a~~~l~~~ 62 (211)
T PF07859_consen 21 AARLAAERGFVVVS-I---DYR--LAPEAPF-PAALEDVKAAYRWLLKN 62 (211)
T ss_dssp HHHHHHHHTSEEEE-E---E-----TTTSST-THHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccEEEEE-e---ecc--ccccccc-cccccccccceeeeccc
Confidence 345564 9999997 2 222 1233233 57799999999999998
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.87 E-value=25 Score=36.66 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=35.1
Q ss_pred cceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee-eccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 301 ~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
...+.|||-...|+.....+ .+|+++|..+.. ...+|+ +..... +.++++|-++++...
T Consensus 211 ~~gicfspsne~l~vsVG~D---kki~~yD~~s~~-s~~~l~y~~Plst---------vaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYD---KKINIYDIRSQA-STDRLTYSHPLST---------VAFSECGTYLCAGNS 270 (673)
T ss_pred cCcceecCCccceEEEeccc---ceEEEeeccccc-ccceeeecCCcce---------eeecCCceEEEeecC
Confidence 34588999876543332222 489999987742 234443 333333 778888887766543
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.41 E-value=4.9 Score=40.64 Aligned_cols=97 Identities=18% Similarity=0.038 Sum_probs=54.7
Q ss_pred eEEEEEECC-CCceEEEEEEcCCCCCC-CCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 482 KEMIKYQRK-DGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 482 ~e~i~~~s~-DG~~i~g~l~~P~~~~~-~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
...+++... .+.++.-+++.|..... --.|++|+||+-||- |+. +..+ -|-.+.||+.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~-------------Gs~-~~~f-~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGS-------------GSY-VTGF-AWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCC-------------CCC-ccch-hhhHHHHhhCceEEE
Confidence 344444433 25678888888876542 113678999997752 221 2212 133689999999999
Q ss_pred eCCCCceeccCCC----Cc----h--hhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLW----SN----W--FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~----~~----~--~~~~~~~~~~~~~v~~~~~~ 595 (607)
. +.-|....|+- .+ . .| .....|+-.-+++|.+.
T Consensus 103 ~-~~hpgs~~~~~~~~~~~~~~~~p~~~-~erp~dis~lLd~L~~~ 146 (365)
T COG4188 103 A-PDHPGSNAGGAPAAYAGPGSYAPAEW-WERPLDISALLDALLQL 146 (365)
T ss_pred e-ccCCCcccccCChhhcCCcccchhhh-hcccccHHHHHHHHHHh
Confidence 7 33332222221 11 1 22 23355666666667666
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.17 E-value=5.6 Score=38.04 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=42.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.++..+|||.|++||-.+- +...-|| .-.+++-.-+...++ ...++...+||++|.+|...+
T Consensus 63 sVRsvAwsp~g~~La~aSF--------D~t~~Iw--~k~~~efecv~~lEG--HEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASF--------DATVVIW--KKEDGEFECVATLEG--HENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred eeeeeeecCCCcEEEEeec--------cceEEEe--ecCCCceeEEeeeec--cccceeEEEEcCCCCEEEEee
Confidence 5889999999999888764 4445555 344566555443322 223467899999999988764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.74 E-value=22 Score=33.50 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=35.0
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+.++..|-|...++-- .+..++++||+++|+..+-.....+ .+..++|..+..+++..
T Consensus 62 VlD~~~s~Dnskf~s~----------GgDk~v~vwDV~TGkv~Rr~rgH~a----qVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASC----------GGDKAVQVWDVNTGKVDRRFRGHLA----QVNTVRFNEESSVVASG 119 (307)
T ss_pred eeeccccccccccccC----------CCCceEEEEEcccCeeeeecccccc----eeeEEEecCcceEEEec
Confidence 4445555555554321 3557899999999987444333322 25667777667776654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=82.63 E-value=10 Score=40.99 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=44.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+.....||+|+.||-...... ..-..|+++++++-...+ |-.++- .+..+.||||+++|...
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~-----~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSL-----KEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSV 590 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCC-----ccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEe
Confidence 5788999999999888764321 334679999998754433 433322 26689999999987765
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=82.24 E-value=1.6 Score=41.72 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCC
Q 007338 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWS 573 (607)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~ 573 (607)
..+..|+-|.. ++ .| |+|++.|+- .-++.++..-.+..|++||+|+. |.+-.. -+
T Consensus 32 PkpLlI~tP~~--~G-~y--PVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVA-PQl~~~-~~--- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE--AG-TY--PVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVA-PQLYTL-FP--- 86 (307)
T ss_pred CCCeEEecCCc--CC-Cc--cEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEe-chhhcc-cC---
Confidence 46677777873 33 35 999997731 11222222236789999999998 665221 11
Q ss_pred chhhHHHHhhcHHHHHHHHHH
Q 007338 574 NWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 574 ~~~~~~~~~~~~~~~v~~~~~ 594 (607)
--++..+++...-++||-+
T Consensus 87 --p~~~~Ei~~aa~V~~WL~~ 105 (307)
T PF07224_consen 87 --PDGQDEIKSAASVINWLPE 105 (307)
T ss_pred --CCchHHHHHHHHHHHHHHh
Confidence 1224557777888888864
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.06 E-value=32 Score=33.60 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=38.0
Q ss_pred eeecCCCCCcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEecCCe
Q 007338 23 EVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 23 ~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.|+.-|+. .++...||| ....|+-.+- +++-.+|-+... |.. +.+..+. ..+-...|+.||.
T Consensus 21 ev~~pP~D-sIS~l~FSP~~~~~~~A~SW--------D~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 21 EVPNPPED-SISALAFSPQADNLLAAGSW--------DGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDDGS 85 (347)
T ss_pred ecCCCccc-chheeEeccccCceEEeccc--------CCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccCCc
Confidence 44444444 799999999 3333323322 566677766554 332 2221111 1255789999988
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
.+|..
T Consensus 86 kVf~g 90 (347)
T KOG0647|consen 86 KVFSG 90 (347)
T ss_pred eEEee
Confidence 77763
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.41 E-value=4.6 Score=40.38 Aligned_cols=93 Identities=18% Similarity=0.071 Sum_probs=52.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
....-.|.+.||..+..+...+..-. + -+||.+|+. + .+...+......|+++||.|+.
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~~--~----g~Vvl~HG~----~-----------Eh~~ry~~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEPP--K----GVVVLVHGL----G-----------EHSGRYEELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCCC--C----cEEEEecCc----h-----------HHHHHHHHHHHHHHhCCCEEEE
Confidence 34456788899999999998887411 1 566666642 0 1111112336899999999997
Q ss_pred CCCCceec-c--CCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIG-E--GLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g-~--g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
-+-+-.| + |..++-.-.++.+.|+..-|+.++..
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~ 103 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEP 103 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhcc
Confidence 4432222 2 22222221245555555555555543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=81.21 E-value=27 Score=35.82 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=23.4
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
..+..+.|||.-..|+.++..+ ..+.+||+.
T Consensus 317 dev~~V~WSPh~etvLASSg~D------------~rl~vWDls 347 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTD------------RRLNVWDLS 347 (422)
T ss_pred cceEEEEeCCCCCceeEecccC------------CcEEEEecc
Confidence 3566899999999998887532 367788886
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=81.00 E-value=2.2 Score=46.57 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc--eec--cC
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP--IIG--EG 570 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~--~~g--~g 570 (607)
+.=-|+.|.+...+. ++||+||+|||-|..| +.. . ..+....+++.++.+|+. .+.+ ..| ..
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G--------~~~-~--~~~~~~~~~~~~~vivVt-~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFG--------SGS-F--PPYDGASLAASKDVIVVT-INYRLGAFGFLSL 174 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTTSS--------CTT-S--GGGHTHHHHHHHTSEEEE-E----HHHHH-BS
T ss_pred HHHhhhhcccccccc--ccceEEEeecccccCC--------Ccc-c--ccccccccccCCCEEEEE-ecccccccccccc
Confidence 555677898866543 5699999998755433 211 0 011224678889999998 3321 012 12
Q ss_pred CCCchhhHHHHhhcHHHHHHHHHH
Q 007338 571 LWSNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
.+....-+-.-+.|++.|.+|+-+
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~ 198 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQD 198 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHH
T ss_pred cccccCchhhhhhhhHHHHHHHHh
Confidence 221111122347789999999754
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=80.71 E-value=4.7 Score=41.00 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=52.1
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCc--cc-------------cCCCcCCCCCCchhHHH
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ--VR-------------GSPNEFSGMTPTSSLIF 551 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~--~~-------------g~p~~~~~~~~~~~q~l 551 (607)
|++.||..|..+.+.|. ++ ..+||.+|+- +++... +. -.+..|..+.-...+.|
T Consensus 2 ~~~~~g~~l~~~~~~~~--~~-----kg~v~i~HG~----~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l 70 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK--NA-----IGIIVLIHGL----KSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENF 70 (332)
T ss_pred ccCCCCCeEEEeeeecc--CC-----eEEEEEECCC----chhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHH
Confidence 67889999999998885 22 2566666642 222210 00 00001100001236899
Q ss_pred hccCeEEEeCCCCceecc--CCC---CchhhHHHHhhcHHHHHHHHHH
Q 007338 552 LARRFAVLAGPSIPIIGE--GLW---SNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 552 a~~GY~Vl~~~~~~~~g~--g~~---~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
+++||.|+. .+.+..|. |.. ++-.-...+++|+...++.+..
T Consensus 71 ~~~G~~V~~-~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~ 117 (332)
T TIGR01607 71 NKNGYSVYG-LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRIND 117 (332)
T ss_pred HHCCCcEEE-ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhh
Confidence 999999998 65544441 211 1112236677777777776643
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.46 E-value=17 Score=36.34 Aligned_cols=36 Identities=11% Similarity=-0.031 Sum_probs=23.4
Q ss_pred eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 294 l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
|...+.-+..++|+|.|++|++-.. +. .|-+.|+.+
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaD--Dk--tlrvwdl~~ 365 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCAD--DK--TLRVWDLKN 365 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEec--CC--cEEEEEecc
Confidence 3345556788999999998876542 22 344446665
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.24 E-value=24 Score=35.82 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=77.4
Q ss_pred ccceeeEcCCC-cEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccC-c
Q 007338 300 RFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND-E 377 (607)
Q Consensus 300 ~~~~~~ws~Dg-~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~-~ 377 (607)
+.-.++|...| ..++.+.+ ..|+.++++++ ..+.+.+..-...+... +.+..++ ...|||....... .
T Consensus 116 RPLGl~f~~~ggdL~VaDAY-----lGL~~V~p~g~--~a~~l~~~~~G~~~kf~--N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAY-----LGLLKVGPEGG--LAELLADEAEGKPFKFL--NDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred CcceEEeccCCCeEEEEecc-----eeeEEECCCCC--cceeccccccCeeeeec--CceeEcC-CCeEEEeccccccch
Confidence 44567887776 55666543 58999999984 34444321111000000 0155666 4457777654321 2
Q ss_pred CcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEE
Q 007338 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (607)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~ 457 (607)
...++.+-.| ....| |.++|..+..++.|.+.- .... ..++|+|++.++++-.+..+-..+|+-
T Consensus 186 rd~~~a~l~g--~~~GR--l~~YD~~tK~~~VLld~L-----~F~N-------GlaLS~d~sfvl~~Et~~~ri~rywi~ 249 (376)
T KOG1520|consen 186 RDFVFAALEG--DPTGR--LFRYDPSTKVTKVLLDGL-----YFPN-------GLALSPDGSFVLVAETTTARIKRYWIK 249 (376)
T ss_pred hheEEeeecC--CCccc--eEEecCcccchhhhhhcc-----cccc-------cccCCCCCCEEEEEeeccceeeeeEec
Confidence 2334433333 12233 668888777766665432 1111 246899999988888777777778876
Q ss_pred ecCCCce
Q 007338 458 SWPLKKS 464 (607)
Q Consensus 458 ~~~~~~~ 464 (607)
...-|+.
T Consensus 250 g~k~gt~ 256 (376)
T KOG1520|consen 250 GPKAGTS 256 (376)
T ss_pred CCccCch
Confidence 5444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 6e-09
Identities = 62/449 (13%), Positives = 123/449 (27%), Gaps = 132/449 (29%)
Query: 126 SNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPD 185
+ K+I+ D+++ + S + +L V VE
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVS------GTLRLFWTL----LSKQEEMVQKFVEEVLR 88
Query: 186 QKYVLITSMHRPYSYKVPCA---RFSQKVQVWTTDG---------------KLVRELCDL 227
Y + S + + P + ++ D KL + L +L
Sbjct: 89 INYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 228 PPAEDIPVCYNSVREGM-------------RSISWRADKPSTLYWVEAQDRGDANVEVSP 274
PA+++ + G+ S + ++W+ + + N SP
Sbjct: 148 RPAKNVLID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCN---SP 195
Query: 275 RDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334
++ E+L KL + +W S N + + L
Sbjct: 196 ETVL-------------EMLQKLLYQIDP-NWTSRSDHSSNIK-LRIHSIQAELRRLLKS 240
Query: 335 DVAPRVLFDRVFENVYS-------DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387
L V NV + + ++ T+ V + I + +
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 388 FTPEGNIPFLDLFDINTGSKER----------------IWESNRE-----KYFETAVALV 426
TP+ L + + I ES R+ ++ V
Sbjct: 298 LTPDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH----V 350
Query: 427 FGQGEEDINLNQLKILTSKESKTEITQYHILS-WPLKKSSQITNFPHPYPTLASLQKEMI 485
I + L +L E + + LS +P S+ I P L+ + ++I
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFP--PSAHI-----PTILLSLIWFDVI 400
Query: 486 KYQ--------------RKDGVPLTATLY 500
K K T ++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 47/214 (21%)
Query: 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96
SPDGK+IAF +R +EE VS +W+AD ET +K + E+ +I S W
Sbjct: 65 RISPDGKKIAF-MRANEEKKVS----EIWVADLETLSSKKILEAKNI------RSLEWNE 113
Query: 97 NSTLLIFTIPSSRRDPPKKTMVPL-----GPKIQSNEQKNIII----SRMTDNLLKDEYD 147
+S L+ R D + E+ I S +
Sbjct: 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRF 173
Query: 148 ESLF-----------------DYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190
S Y+ + + ++ V D + +L
Sbjct: 174 SSGIWHRDKIVVNVPHREIIPQYFKFWDIY--IWEDGKEEKMFEKVSFYA-VDSDGERIL 230
Query: 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224
+ S+ +++ DGK V +
Sbjct: 231 LYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 29 DGAKINFVS-WSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86
AK ++S G+ +A+ + + + +DN + + I + + + + +
Sbjct: 10 TFAKFAYLSDPRTKGELVAYVLTKANLKDNKY--ENTIVIENLKNNARRFIENAT----- 62
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116
+ + F + K +
Sbjct: 63 ----MPRISPDGKKIAFM---RANEEKKVS 85
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLN 86
+ IN + PDG++IA V N + ++ + E GE K + F
Sbjct: 51 NLGVINNARFFPDGRKIAIRVMRGSSLNTA----DLYFYNGENGEIKRITYFSGKSTGRR 106
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPP 113
+ + L+I + P
Sbjct: 107 MFTDVAGFDPDGNLIIS---TDAMQPF 130
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 30/265 (11%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 15 DDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74
D G + + +F + S + + IA+ + + + + D E +
Sbjct: 406 DLETGKPTVIERSREAMITDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464
Query: 75 KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIII 134
+ + + +S L + S R P V L + +
Sbjct: 465 FAATTEN-----SHDYAPAFDADSKNLYYL--SYRSLDPSPDRVVLNFSFEVVSK----- 512
Query: 135 SRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSM 194
L+ + + + S G + + P ++I
Sbjct: 513 -PFVIPLIPGSPNPTKLVPRSM-----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 566
Query: 195 HRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254
Y VP K V D+ + V + + AD+
Sbjct: 567 SSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRK 620
Query: 255 STLYWVEAQDRGDANVEVSPRDIIY 279
+ + + +E +
Sbjct: 621 TVMVRKDDGKIYTFPLEKPEDERTV 645
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIA 67
++RL PEK G+ N SPDG A S +V+ K +++
Sbjct: 63 LLYRLSLAGDPSPEKVDTGFATIC-NNDHGISPDGALYAISDKVEFG------KSAIYLL 115
Query: 68 DAETGEAKPLFE---------SPD 82
+ G + + + SPD
Sbjct: 116 PSTGGTPRLMTKNLPSYWHGWSPD 139
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.97 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.97 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.97 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.97 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.97 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.97 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.96 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.95 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.85 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.77 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.73 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.72 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.68 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.67 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.67 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.64 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.6 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.52 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.49 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.48 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.43 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.41 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.41 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.36 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.34 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.33 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.3 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.3 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.3 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.28 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.28 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.25 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.24 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.21 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.17 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.15 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.14 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.11 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.1 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.08 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.08 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.06 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.06 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.06 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.05 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.98 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.98 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.96 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.95 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.89 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.88 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.87 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.86 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.84 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.84 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.83 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.83 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.82 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.82 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.81 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.81 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.78 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.77 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.76 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.75 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.74 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.73 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.71 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.69 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.68 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.68 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.68 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.67 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.65 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.65 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.64 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.64 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.63 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.62 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.61 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.61 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.6 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.59 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.59 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.58 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.57 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.56 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.56 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.54 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.54 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.54 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.53 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.49 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.49 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.49 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.48 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.48 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.47 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.46 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.46 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.45 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.42 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.42 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.42 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.42 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.41 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.41 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.41 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.39 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.38 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.36 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.35 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 98.34 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.34 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.33 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.32 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.32 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.32 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.32 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.31 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.3 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.29 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 98.29 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.28 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.28 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 98.27 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.26 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.26 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.25 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.24 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.24 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.23 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 98.22 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.21 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.21 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 98.11 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.11 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.1 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.1 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.1 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 98.09 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 98.07 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.05 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.05 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.05 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.03 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.03 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.03 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.01 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.99 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 97.97 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 97.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.95 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.92 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 97.88 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.88 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.87 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.82 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 97.81 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.81 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.81 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.8 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.79 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.79 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.79 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.77 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.75 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 97.75 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.65 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.64 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 97.63 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.63 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.63 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 97.6 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.6 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.57 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.56 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.54 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 97.52 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.45 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.44 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.42 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 97.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.41 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 97.41 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 97.4 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.37 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.36 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 97.36 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.36 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 97.36 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.35 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 97.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.31 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 97.3 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 97.27 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.25 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.23 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.22 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 97.21 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 97.21 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.2 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 97.19 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 97.17 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.17 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.14 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 97.14 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.13 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.13 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 97.12 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 97.11 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.11 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.09 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.08 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.08 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 97.08 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.08 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 97.07 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.07 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.06 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 97.04 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 97.04 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.03 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 97.02 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.0 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.96 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 96.96 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.93 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.92 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.92 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 96.92 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 96.92 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 96.92 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.88 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.87 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.87 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.85 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 96.85 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 96.81 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 96.8 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 96.8 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 96.79 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 96.78 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.78 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 96.77 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 96.76 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 96.76 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.73 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.66 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 96.63 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.62 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 96.62 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.61 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 96.56 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.56 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 96.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.49 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 96.47 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 96.44 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 96.43 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 96.43 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.41 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 96.35 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 96.31 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.27 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 96.25 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.19 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.19 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 96.18 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 96.15 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.04 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.03 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.01 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 95.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 95.59 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.58 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 95.52 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 95.47 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 95.41 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.09 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 95.06 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.02 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 94.97 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 94.78 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 94.71 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 94.21 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 93.98 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 93.98 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 93.92 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 93.91 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 93.89 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 93.69 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 93.62 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 93.62 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 93.57 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 93.5 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 93.5 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 93.43 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 93.39 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 93.34 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 93.3 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 93.1 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 92.78 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 92.77 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.68 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 92.18 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 92.13 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 92.11 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 92.03 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 91.82 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 91.68 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 91.4 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 90.97 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 90.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 90.69 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 90.53 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 90.52 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 90.49 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 90.08 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 89.67 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 88.99 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 88.72 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 88.67 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 88.58 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 87.86 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 87.71 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 87.62 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 87.03 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 86.99 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 86.64 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 86.64 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 86.59 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 86.42 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 86.31 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 86.29 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 85.98 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 85.81 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 85.61 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 85.59 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 85.27 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 85.22 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 85.15 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 84.82 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 84.56 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 84.29 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 84.11 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 83.69 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 83.52 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 83.26 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 83.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 82.74 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 82.44 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 82.27 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 81.99 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 81.98 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 81.97 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 81.01 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 80.15 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=304.73 Aligned_cols=467 Identities=11% Similarity=-0.007 Sum_probs=280.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCC--cc--cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KI--NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~--~~--~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
.|+|.++. +|+.+++....... .. .++.|||||++|+|....... --.....++|++|+++|+.++|+...
T Consensus 37 ~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~-~r~~~~~~~~~~d~~~~~~~~l~~~~ 111 (740)
T 4a5s_A 37 NILVFNAE----YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ-WRHSYTASYDIYDLNKRQLITEERIP 111 (740)
T ss_dssp EEEEEETT----TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECC----CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee-EEEccceEEEEEECCCCcEEEcccCC
Confidence 58888887 77776664322211 12 338999999999998763100 00023378999999999998887544
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
.. ...+.|||||+.|++.. ...||+
T Consensus 112 ~~-----~~~~~~SPdG~~la~~~--------------------------------------------------~~~i~~ 136 (740)
T 4a5s_A 112 NN-----TQWVTWSPVGHKLAYVW--------------------------------------------------NNDIYV 136 (740)
T ss_dssp TT-----EEEEEECSSTTCEEEEE--------------------------------------------------TTEEEE
T ss_pred Cc-----ceeeEECCCCCEEEEEE--------------------------------------------------CCeEEE
Confidence 32 56899999987666531 125666
Q ss_pred EeC-CCCeeecCCCCc--------------------eeeeeeCCCCceEEEEEccCCCc--ccc----------C-----
Q 007338 162 GSL-DGTAKDFGTPAV--------------------YTAVEPSPDQKYVLITSMHRPYS--YKV----------P----- 203 (607)
Q Consensus 162 ~~~-~g~~~~lt~~~~--------------------~~~~~~SpDg~~i~~~~~~~~~~--~~~----------~----- 203 (607)
+++ +|+.++|+..+. ...+.|||||++|+|.+.+.... +.. +
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 666 456666654321 12478999999999987542100 000 0
Q ss_pred ---CC---cCCccEEEEeCCC---C---eeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccc
Q 007338 204 ---CA---RFSQKVQVWTTDG---K---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (607)
Q Consensus 204 ---~~---~~~~~l~~~d~~~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~ 271 (607)
.. .-...|+++|+++ + +..+|.. + ..+.+.......++|||||+. +++.....
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~-~------~~~~~~~~~~~~~~wspdg~~-~~~~~~r~------- 281 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA-P------ASMLIGDHYLCDVTWATQERI-SLQWLRRI------- 281 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC-C------HHHHTSCEEEEEEEEEETTEE-EEEEEESS-------
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC-C------ccCCCCCeEEEEEEEeCCCeE-EEEEeCCC-------
Confidence 00 0012689999998 7 5555532 0 000000011234899999984 33322111
Q ss_pred cCCCceEEeccCCCCCCCC-------ceeee-e-cCcc-----cceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCC
Q 007338 272 VSPRDIIYTQPAEPAEGEK-------PEILH-K-LDLR-----FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 337 (607)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~~-------~~~l~-~-~~~~-----~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~ 337 (607)
.....+++++. .+| + ...+. . .... ...+.|||||+.|++-...+.+..+||++|+++ +.
T Consensus 282 -~~~~~i~~~d~--~tg-~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~--~~ 355 (740)
T 4a5s_A 282 -QNYSVMDICDY--DES-SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK--KD 355 (740)
T ss_dssp -TTEEEEEEEEE--ETT-TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC--SS
T ss_pred -CCEEEEEEEEC--CCC-ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC--Cc
Confidence 11234666663 333 3 22221 1 1211 247899999998763222345678999999998 46
Q ss_pred ceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee--ccCcCcEEEEeecCCCCCCCcceeEeeecCCCCee-EEeecC
Q 007338 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK--ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESN 414 (607)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~-~l~~~~ 414 (607)
.+.|+...+.. . ..+.+|++.|+|.+.. ......+| +++++++++.+ +|+...
T Consensus 356 ~~~lT~g~~~v-~-------~~~~~d~~~i~f~~~~~~~~~~~~~l----------------y~v~~~g~~~~~~lt~~~ 411 (740)
T 4a5s_A 356 CTFITKGTWEV-I-------GIEALTSDYLYYISNEYKGMPGGRNL----------------YKIQLIDYTKVTCLSCEL 411 (740)
T ss_dssp CEESCCSSSCE-E-------EEEEECSSEEEEEESCGGGCTTCBEE----------------EEEETTEEEEEEESSTTT
T ss_pred eEecccCCEEE-E-------EEEEEeCCEEEEEEecCCCCCceeEE----------------EEEECCCCCcceeecccc
Confidence 67777543321 0 1122458888888753 21112334 35676555433 343210
Q ss_pred CcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCC---CcccCC-ceEEEEEECC
Q 007338 415 REKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY---PTLASL-QKEMIKYQRK 490 (607)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~---~~~~~~-~~e~i~~~s~ 490 (607)
.. .-.... ..+||+|++++++++++.+ |+.+++++..+++..+++..+... .+...+ ..+.+++ +.
T Consensus 412 ~~-~~~~~~-------~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~ 481 (740)
T 4a5s_A 412 NP-ERCQYY-------SVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-IL 481 (740)
T ss_dssp ST-TTBCBE-------EEEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EE
T ss_pred CC-CCCceE-------EEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-cc
Confidence 00 001111 2468999999999998887 889999998878777776554211 111223 6788888 78
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEEeCCCCceecc
Q 007338 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGE 569 (607)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl~~~~~~~~g~ 569 (607)
||.+|+++|++|++|++++++ |+||++|+++. .+. ....| .....++|+ ++||+|+. ++. +|.
T Consensus 482 dg~~l~~~~~~P~~~~~~~~~--P~vv~~HGg~~------~~~--~~~~~---~~~~~~~l~~~~G~~Vv~-~D~--rG~ 545 (740)
T 4a5s_A 482 NETKFWYQMILPPHFDKSKKY--PLLLDVYAGPC------SQK--ADTVF---RLNWATYLASTENIIVAS-FDG--RGS 545 (740)
T ss_dssp TTEEEEEEEEECTTCCTTSCE--EEEEECCCCTT------CCC--CCCCC---CCSHHHHHHHTTCCEEEE-ECC--TTC
T ss_pred CCeEEEEEEEeCCCCCCCCCc--cEEEEECCCCc------ccc--ccccc---CcCHHHHHHhcCCeEEEE-EcC--CCC
Confidence 999999999999999887766 99999886421 110 01111 122345666 59999998 443 333
Q ss_pred CCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 570 GLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 570 g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
|.. ....++...+.|++++|++|++++++|.+++
T Consensus 546 g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 586 (740)
T 4a5s_A 546 GYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRI 586 (740)
T ss_dssp SSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccE
Confidence 322 2234445678999999999999999998875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-30 Score=289.09 Aligned_cols=452 Identities=13% Similarity=0.118 Sum_probs=287.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCC-----------------------CcccceEEccCCCEEEEEeecCcccccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-----------------------AKINFVSWSPDGKRIAFSVRVDEEDNVSSCK 61 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-----------------------~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~ 61 (607)
..||+.++. +|+.++++..... ..+..++|||||++|+|...
T Consensus 64 ~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~----------- 128 (741)
T 2ecf_A 64 LDLWSYDIG----SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG----------- 128 (741)
T ss_dssp EEEEEEETT----TCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-----------
T ss_pred cEEEEEECC----CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-----------
Confidence 479999987 7888887743221 12689999999999999863
Q ss_pred eeEEEEECCCC---ceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccc
Q 007338 62 LRVWIADAETG---EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (607)
Q Consensus 62 ~~L~v~d~~~g---~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 138 (607)
..||++|++++ +.++++..... +..+.|||||+.|++..
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~-----~~~~~~SPDG~~la~~~--------------------------------- 170 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGF-----ATDAKLSPKGGFVSFIR--------------------------------- 170 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSC-----EEEEEECTTSSEEEEEE---------------------------------
T ss_pred CcEEEEECCCCCcceEEEcccCCcc-----cccccCCCCCCEEEEEe---------------------------------
Confidence 58999999999 78888754332 56899999988766641
Q ss_pred cccccCcccccceeeeccceEEEEeC-CCCeeecCCCCc------------------eeeeeeCCCCceEEEEEccCCCc
Q 007338 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV------------------YTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~~------------------~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
..+|+++++ +|+.++++.... ...+.|||||++|++.+......
T Consensus 171 -----------------~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 171 -----------------GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPV 233 (741)
T ss_dssp -----------------TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTS
T ss_pred -----------------CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCC
Confidence 125677777 456666654321 25789999999999986542100
Q ss_pred cc-----------------cCC---CcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEE
Q 007338 200 YK-----------------VPC---ARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (607)
Q Consensus 200 ~~-----------------~~~---~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (607)
.. .+. ......|+++|+++ ++.+.+..... .......++| |||+. |+
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~-pDg~~-l~ 301 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE----------QDIYLARVNW-RDPQH-LS 301 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC----------SSEEEEEEEE-EETTE-EE
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC----------cceEEEEEEe-CCCCE-EE
Confidence 00 000 00012789999998 88776642100 0111235899 99984 44
Q ss_pred EEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc-----ccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-----RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-----~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
+....... ....+++++. .+| +...+..... ....+.|||||+ +++... ..+..+||.+++++
T Consensus 302 ~~~~~~~~-------~~~~i~~~d~--~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~-~~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 302 FQRQSRDQ-------KKLDLVEVTL--ASN-QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSE-RTGFQHLYRIDSKG 369 (741)
T ss_dssp EEEEETTS-------SEEEEEEEET--TTC-CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEEC-TTSSCEEEEECSSS
T ss_pred EEEecccC-------CeEEEEEEEC--CCC-ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEec-CCCccEEEEEcCCC
Confidence 43321111 1235666664 333 4444332211 235799999999 444332 23557999999876
Q ss_pred CCCCceEeeecc--ccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEe
Q 007338 334 KDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (607)
Q Consensus 334 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (607)
+ .+.|+... +.. ...|+|||+.|++....++.....+| .++..++..+.|.
T Consensus 370 --~-~~~l~~~~~~v~~--------~~~~s~dg~~l~~~~~~~~~~~~~l~----------------~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 370 --K-AAALTHGNWSVDE--------LLAVDEKAGLAYFRAGIESARESQIY----------------AVPLQGGQPQRLS 422 (741)
T ss_dssp --C-EEESCCSSSCEEE--------EEEEETTTTEEEEEECSSCTTCBEEE----------------EEETTCCCCEECC
T ss_pred --C-eeeeeecceEEEe--------EeEEeCCCCEEEEEEeCCCCceEEEE----------------EEEcCCCCeeecc
Confidence 3 45554332 222 12599999998887654221123343 4454344445553
Q ss_pred ecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCCC-C---CCccc--CC-ceEE
Q 007338 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH-P---YPTLA--SL-QKEM 484 (607)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~-~---~~~~~--~~-~~e~ 484 (607)
.. ..+.. .+||+|++.+++..++...|+++|+++..++..+.|+.+.. . ..+.. .+ .+|.
T Consensus 423 ~~------~~~~~-------~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 489 (741)
T 2ecf_A 423 KA------PGMHS-------ASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEF 489 (741)
T ss_dssp CS------CSEEE-------EEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEE
T ss_pred cC------CCceE-------EEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEE
Confidence 21 11111 36899999999999999999999999987666667765432 0 12222 45 8999
Q ss_pred EEEECCCC-ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEEeCC
Q 007338 485 IKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGP 562 (607)
Q Consensus 485 i~~~s~DG-~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl~~~ 562 (607)
++|++.|| .+|++++++|+++++++++ |+||++|++... . .....|..... ...+.|+++||+|+. +
T Consensus 490 ~~~~~~~g~~~l~~~~~~P~~~~~~~~~--p~vv~~hG~~~~------~--~~~~~~~~~~~~~~~~~l~~~G~~v~~-~ 558 (741)
T 2ecf_A 490 GTLTAADGKTPLNYSVIKPAGFDPAKRY--PVAVYVYGGPAS------Q--TVTDSWPGRGDHLFNQYLAQQGYVVFS-L 558 (741)
T ss_dssp EEEECTTSSCEEEEEEECCSSCCTTSCE--EEEEECCCSTTC------C--SCSSCCCCSHHHHHHHHHHHTTCEEEE-E
T ss_pred EEEEcCCCCEEEEEEEEeCCCCCCCCCc--CEEEEEcCCCCc------c--cccccccccchhHHHHHHHhCCCEEEE-E
Confidence 99999999 9999999999998776655 999998864211 0 00111210000 246899999999998 5
Q ss_pred CCceeccCCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 563 SIPIIGEGLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 563 ~~~~~g~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+. +|.|.. ....|......|+.++++||++++.+|.+++
T Consensus 559 d~--rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i 604 (741)
T 2ecf_A 559 DN--RGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARI 604 (741)
T ss_dssp CC--TTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred ec--CCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhE
Confidence 54 344432 1223334568999999999999998887764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=276.43 Aligned_cols=431 Identities=13% Similarity=0.094 Sum_probs=271.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+..++|||| ++|+|... ..|+++|+++++.++++..... +..+.||||++.+++..
T Consensus 83 ~v~~~~~spd-~~~~~~~~-----------~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~SpdG~~la~~~------ 139 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQ-----------GGLVGFDMLARKVTYLFDTNEE-----TASLDFSPVGDRVAYVR------ 139 (706)
T ss_dssp CCEEEEETTT-TEEEEEET-----------TEEEEEETTTTEEEEEECCTTC-----CTTCEECTTSSEEEEEE------
T ss_pred CceeEEECCC-CeEEEEEC-----------CEEEEEECCCCceEEccCCccc-----ccCCcCCCCCCEEEEEE------
Confidence 4788999999 88888752 5899999999998888754332 67899999988766641
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-C-----CCeeecCCCC-c--------
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D-----GTAKDFGTPA-V-------- 176 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----g~~~~lt~~~-~-------- 176 (607)
...|+++++ + |+.++++... .
T Consensus 140 --------------------------------------------~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 140 --------------------------------------------NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp --------------------------------------------TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred --------------------------------------------CCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 124666666 5 6556654322 1
Q ss_pred -------eeeeeeCCCCceEEEEEccCCCccc-----------------cC---CCcCCccEEEEeCCCCeeEEeccCCC
Q 007338 177 -------YTAVEPSPDQKYVLITSMHRPYSYK-----------------VP---CARFSQKVQVWTTDGKLVRELCDLPP 229 (607)
Q Consensus 177 -------~~~~~~SpDg~~i~~~~~~~~~~~~-----------------~~---~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (607)
...+.|||||++|++.+.+...... .+ .......|++||+++++.+.+.....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 3688999999999998732110000 00 00012479999999998777643100
Q ss_pred CCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec-Cc----cccee
Q 007338 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DL----RFRSV 304 (607)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~-~~----~~~~~ 304 (607)
.......+.|||||+. |++... +.. .....+++++. .+|...+.+... .. ....+
T Consensus 256 ----------~~~~~~~~~~spdg~~-l~~~~~-~~~------~~~~~v~~~d~--~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 256 ----------KEKFLTNLSWSPDENI-LYVAEV-NRA------QNECKVNAYDA--ETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp ----------TTCEEEEEEECTTSSE-EEEEEE-CTT------SCEEEEEEEET--TTCCEEEEEEEEECSSCCCCCSCC
T ss_pred ----------CceeEeeEEEECCCCE-EEEEEe-CCC------CCeeEEEEEEC--CCCceeeEEEEccCCCeECccCCc
Confidence 0112345999999984 433322 111 11235666664 333122333211 11 12568
Q ss_pred eEcC--CCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEE
Q 007338 305 SWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (607)
Q Consensus 305 ~ws~--Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~ 382 (607)
.||| ||+.++.. . ..+..+||.+++++ +..+.|+...... . ..+.|+|||+.|++.....+.....+
T Consensus 316 ~~sp~~dg~~l~~~-~-~~g~~~l~~~~~~~--~~~~~l~~~~~~v-~-----~~~~~spdg~~l~~~~~~~~~~~~~l- 384 (706)
T 2z3z_A 316 TFLPGSNNQFIWQS-R-RDGWNHLYLYDTTG--RLIRQVTKGEWEV-T-----NFAGFDPKGTRLYFESTEASPLERHF- 384 (706)
T ss_dssp EECTTCSSEEEEEE-C-TTSSCEEEEEETTS--CEEEECCCSSSCE-E-----EEEEECTTSSEEEEEESSSCTTCBEE-
T ss_pred eeecCCCCEEEEEE-c-cCCccEEEEEECCC--CEEEecCCCCeEE-E-----eeeEEcCCCCEEEEEecCCCCceEEE-
Confidence 9999 99855433 2 23567999999776 3445554322110 0 01579999999888765421111233
Q ss_pred EeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCC
Q 007338 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (607)
Q Consensus 383 ~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~ 462 (607)
+.+++++++.+.+.... .+.. .+||||++.+++..++.+.|++++++++.++
T Consensus 385 ---------------~~~d~~~~~~~~l~~~~------~~~~-------~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 385 ---------------YCIDIKGGKTKDLTPES------GMHR-------TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ---------------EEEETTCCCCEESCCSS------SEEE-------EEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ---------------EEEEcCCCCceeccCCC------ceEE-------EEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 35677777666554221 1222 3689999999999999999999999999887
Q ss_pred ceeeEecCCCCCCcccCC-ceEEEEEECCCC-ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcC
Q 007338 463 KSSQITNFPHPYPTLASL-QKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540 (607)
Q Consensus 463 ~~~~Lt~~~~~~~~~~~~-~~e~i~~~s~DG-~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~ 540 (607)
+.+.++..+ +. ....+ .++.+++++.|| .+|++++++|+++++++++ |+||++|+++.. + .....|
T Consensus 437 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~--p~iv~~HGg~~~------~--~~~~~~ 504 (706)
T 2z3z_A 437 SHTLLEAKN-PD-TGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKY--PVIVYVYGGPHA------Q--LVTKTW 504 (706)
T ss_dssp EEEEEECC--------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTSCE--EEEEECCCCTTC------C--CCCSCC
T ss_pred eEeeccccc-hh-hhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCc--cEEEEecCCCCc------e--eecccc
Confidence 755555543 33 22334 889999999999 9999999999999887766 999998864211 0 001112
Q ss_pred CCCCCchhHHHhccCeEEEeCCCCceeccCCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 541 ~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
........++|+++||+|+. ++. +|.|.. ....+....+.|+++++++|.+++.+|.+++
T Consensus 505 ~~~~~~~~~~la~~G~~v~~-~d~--rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 571 (706)
T 2z3z_A 505 RSSVGGWDIYMAQKGYAVFT-VDS--RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRI 571 (706)
T ss_dssp ----CCHHHHHHHTTCEEEE-ECC--TTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred ccCchHHHHHHHhCCcEEEE-Eec--CCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchhe
Confidence 11111246899999999998 544 343332 2234556678999999999999998888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=280.94 Aligned_cols=472 Identities=11% Similarity=0.007 Sum_probs=273.9
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.|++.++. +|+.+++...... ..+..++|||||++|||....... ........||++|+++|+.++++.....
T Consensus 38 ~i~~~d~~----~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 38 TVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-YQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp CEEEBCGG----GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-SSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CEEEEECC----CCcEEEEeccccccccccceEEECCCCCEEEEEecCccc-eeecceeeEEEEECCCCceEeccCCccc
Confidence 47788876 6776666532221 137889999999999998753110 0001237899999999998878643221
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
...+..+.|||||+.|++.. ..+|++++
T Consensus 113 --~~~~~~~~~SPdG~~la~~~--------------------------------------------------~~~i~~~~ 140 (723)
T 1xfd_A 113 --NAKLQYAGWGPKGQQLIFIF--------------------------------------------------ENNIYYCA 140 (723)
T ss_dssp --SCCCSBCCBCSSTTCEEEEE--------------------------------------------------TTEEEEES
T ss_pred --cccccccEECCCCCEEEEEE--------------------------------------------------CCeEEEEE
Confidence 11245789999987666532 12466666
Q ss_pred C-CCCeeecCCCC--------------------ceeeeeeCCCCceEEEEEccCCCc--cccC-----------------
Q 007338 164 L-DGTAKDFGTPA--------------------VYTAVEPSPDQKYVLITSMHRPYS--YKVP----------------- 203 (607)
Q Consensus 164 ~-~g~~~~lt~~~--------------------~~~~~~~SpDg~~i~~~~~~~~~~--~~~~----------------- 203 (607)
+ +|+.++++... .+..+.|||||++|++.+...... +..+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 6 45555554321 125799999999999987542100 0000
Q ss_pred CC--cCCccEEEEeCCCCee-EEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEe
Q 007338 204 CA--RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (607)
Q Consensus 204 ~~--~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (607)
.. .....|++||+.+++. +.|..... +.........++|||||+. ++.... .. .....+++
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~SpDg~~-l~~~~~-~~-------~~~~~i~~ 284 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDD-------PRMREYYITMVKWATSTKV-AVTWLN-RA-------QNVSILTL 284 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCC-------GGGSSEEEEEEEESSSSEE-EEEEEE-TT-------SCEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCcc-------CCCccceeEEEEEeCCCeE-EEEEEc-CC-------CCeEEEEE
Confidence 00 0013789999998874 55532100 0000011235899999983 322211 11 11235666
Q ss_pred ccCCCCCCCCceeeeec--Cccc----ceeeEcCCCcEEEEEEecccc----ceEEEEEc-CCCCCCC---ceEeeeccc
Q 007338 281 QPAEPAEGEKPEILHKL--DLRF----RSVSWCDDSLALVNETWYKTS----QTRTWLVC-PGSKDVA---PRVLFDRVF 346 (607)
Q Consensus 281 ~~~~~~~g~~~~~l~~~--~~~~----~~~~ws~Dg~~l~~~~~~~~~----~~~l~~~d-l~~~~~~---~~~l~~~~~ 346 (607)
++. .+| +...+... .... ..+.|||||+.|++......+ ..+||++| ..+ +. .+.|+....
T Consensus 285 ~d~--~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 285 CDA--TTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN--SSNDNIQSITSGDW 359 (723)
T ss_dssp EET--TTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC--SSSCCCCBSCCSSS
T ss_pred EeC--CCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC--CCccceeEeecCCe
Confidence 664 333 43333221 1211 378999999976654222222 56899999 555 33 455543221
Q ss_pred cccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCC-CeeEEeecCCcccceeeeee
Q 007338 347 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVAL 425 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~ 425 (607)
.. . ..+.|+|||+.|++...........+| .++..++ +.+.|...... ...+.
T Consensus 360 ~~-~-----~~~~~spdg~~l~~~~~~~~~~~~~l~----------------~~~~~~~~~~~~l~~~~~~--~~~~~-- 413 (723)
T 1xfd_A 360 DV-T-----KILAYDEKGNKIYFLSTEDLPRRRQLY----------------SANTVGNFNRQCLSCDLVE--NCTYF-- 413 (723)
T ss_dssp CE-E-----EEEEEETTTTEEEEEESSSCTTCCEEE----------------EECSSTTCCCBCSSTTSSS--SCCCC--
T ss_pred EE-E-----eeeEEcCCCCEEEEEEcCCCCcceEEE----------------EEeCCCCCCcceecccccC--CCCeE--
Confidence 11 0 015799999999887653211123343 4554333 23333211000 00111
Q ss_pred ecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCC---CCcccCC-ceEEEEEECCCCceEEEEEEc
Q 007338 426 VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP---YPTLASL-QKEMIKYQRKDGVPLTATLYL 501 (607)
Q Consensus 426 ~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~---~~~~~~~-~~e~i~~~s~DG~~i~g~l~~ 501 (607)
..+||||++.+++..++.+.|..++. +...++...+...+.. ..+...+ .+|.++|++.|| +|+++|++
T Consensus 414 -----~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~ 486 (723)
T 1xfd_A 414 -----SASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILK 486 (723)
T ss_dssp -----EEEECTTSSEEEEECCSSSSCCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEB
T ss_pred -----EEEECCCCCEEEEEccCCCCCeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEe
Confidence 24689999999999999999986554 5544443333222211 1122234 789999999999 99999999
Q ss_pred CCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCC-------Cc
Q 007338 502 PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLW-------SN 574 (607)
Q Consensus 502 P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~-------~~ 574 (607)
|+++++++++ |+||++|+++.. + .....|. ..+..++|+++||+|+. ++. +|.|+. ..
T Consensus 487 P~~~~~~~~~--p~vv~~HG~~~~------~--~~~~~~~--~~~~~~~l~~~G~~vv~-~d~--rG~g~~g~~~~~~~~ 551 (723)
T 1xfd_A 487 PATFTDTTHY--PLLLVVDGTPGS------Q--SVAEKFE--VSWETVMVSSHGAVVVK-CDG--RGSGFQGTKLLHEVR 551 (723)
T ss_dssp CSSCCSSSCE--EEEEECCCCTTC------C--CCCCCCC--CSHHHHHHHTTCCEEEC-CCC--TTCSSSHHHHHHTTT
T ss_pred CCCCCCCCcc--CEEEEEcCCCCc------c--ccCcccc--ccHHHHHhhcCCEEEEE-ECC--CCCccccHHHHHHHH
Confidence 9999877655 999998864211 0 0011111 01234678889999998 554 344432 22
Q ss_pred hhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 575 WFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 575 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
..+......|++++|++|++++.+|.+++
T Consensus 552 ~~~~~~~~~d~~~~~~~l~~~~~~d~~~i 580 (723)
T 1xfd_A 552 RRLGLLEEKDQMEAVRTMLKEQYIDRTRV 580 (723)
T ss_dssp TCTTTHHHHHHHHHHHHHHSSSSEEEEEE
T ss_pred hccCcccHHHHHHHHHHHHhCCCcChhhE
Confidence 33444678899999999999998888764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-28 Score=270.20 Aligned_cols=415 Identities=14% Similarity=0.076 Sum_probs=262.0
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCccc---------ceEEc--cCCCE-EEEEeecCcccccCCCceeEEEEECC--
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKIN---------FVSWS--PDGKR-IAFSVRVDEEDNVSSCKLRVWIADAE-- 70 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~---------~~~~S--PDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~-- 70 (607)
..||+. .. +|+.++|+.... .+. .+.|| |||++ |||+.. ...+||++++.
T Consensus 49 ~~l~~~-~~----~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~---------~~~~l~~~~~~~~ 112 (662)
T 3azo_A 49 ATLVRR-RA----DGAEESALPAPW--NVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF---------GDQRLYAFEPDAP 112 (662)
T ss_dssp EEEEEE-CT----TSCEEESSCTTC--CBCCCGGGTCCCCEEEECCSSSSCEEEEEBT---------TTCCEEEECTTST
T ss_pred EEEEEE-CC----CCCcceeCCCCc--cccccccccCCccceeeeecCCCeEEEEEEC---------CCCeEEEEcCCCC
Confidence 346665 22 678888874332 334 56676 99999 999864 24789999998
Q ss_pred C-CceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCccccc
Q 007338 71 T-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (607)
Q Consensus 71 ~-g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (607)
+ ++.++|+..........+..+.||||++.|++...... +. ...
T Consensus 113 g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--------------------~~--------------~~~- 157 (662)
T 3azo_A 113 GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT--------------------GE--------------GPS- 157 (662)
T ss_dssp TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC--------------------SS--------------STT-
T ss_pred CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc--------------------CC--------------CCC-
Confidence 6 88899986421000112568999999887666431100 00 000
Q ss_pred ceeeeccceEEEEeC-C------CCeeecC-CC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC-CC
Q 007338 150 LFDYYTTAQLVLGSL-D------GTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GK 219 (607)
Q Consensus 150 ~~~~~~~~~l~~~~~-~------g~~~~lt-~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~ 219 (607)
....+|+++++ + ++.++|+ .. ..+..++|||||++|++.+...+. .++. ..+|+++|++ ++
T Consensus 158 ----~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~---~~~~--~~~i~~~d~~~~g 228 (662)
T 3azo_A 158 ----DVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR---MPWE--GTELKTARVTEDG 228 (662)
T ss_dssp ----CEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC---CTTT--CEEEEEEEECTTS
T ss_pred ----CceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC---CCCC--CcEEEEEEECCCC
Confidence 02368999999 5 5677787 54 355689999999999999754321 1111 2479999998 46
Q ss_pred ---eeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee
Q 007338 220 ---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (607)
Q Consensus 220 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 296 (607)
+.+.|.. .
T Consensus 229 ~~~~~~~l~~---------------------------------------------------------------------~ 239 (662)
T 3azo_A 229 RFADTRTLLG---------------------------------------------------------------------G 239 (662)
T ss_dssp CEEEEEEEEE---------------------------------------------------------------------E
T ss_pred cccccEEeCC---------------------------------------------------------------------C
Confidence 3332211 1
Q ss_pred cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeecc--ccccccCCCCCCeeeCCCCCEEEEEeeec
Q 007338 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKE 374 (607)
Q Consensus 297 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~~~~~~~~~ 374 (607)
.......+.|||||+ +++.... .+..+||++|+++ ++.+.++... +....-.++...+.++++++.++. ...
T Consensus 240 ~~~~~~~~~~spdg~-l~~~~~~-~~~~~l~~~~~~~--~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~-~~~- 313 (662)
T 3azo_A 240 PEEAIAQAEWAPDGS-LIVATDR-TGWWNLHRVDPAT--GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV-HGK- 313 (662)
T ss_dssp TTBCEEEEEECTTSC-EEEEECT-TSSCEEEEECTTT--CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE-EBS-
T ss_pred CCceEcceEECCCCe-EEEEECC-CCCeEEEEEECCC--CceeecccccccccCccccccCceEeEeCCCEEEEE-EEc-
Confidence 122345688999998 5555433 2445899999977 3455554321 111000001112444555553332 221
Q ss_pred cCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccc-cccCCEEEEEeecccccce
Q 007338 375 NDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSKESKTEITQ 453 (607)
Q Consensus 375 ~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~~v~~~ss~~~p~~ 453 (607)
+ . ..|+.+++++++.++|.... ..+. .+ +++++.+++..++.+.|++
T Consensus 314 ~--~----------------~~l~~~d~~~~~~~~l~~~~-----~~~~---------~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 314 G--A----------------AVLGILDPESGELVDAAGPW-----TEWA---------ATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp S--S----------------CEEEEEETTTTEEEECCSSC-----CEEE---------EEEEEETTEEEEEEEETTEEEE
T ss_pred C--c----------------cEEEEEECCCCcEEEecCCC-----CeEE---------EEEecCCCEEEEEEcCCCCCCE
Confidence 1 2 23445677667665553211 1111 23 6688899999999999999
Q ss_pred EEEEecCCCceeeEecCCCCCCcccCC-ceEEEEEECCCCceEEEEEEcCCCCC----CCCCCCCCEEEEeccCCccCcc
Q 007338 454 YHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYD----QSKDGPLPCLFWAYPEDYKSKD 528 (607)
Q Consensus 454 l~~~~~~~~~~~~Lt~~~~~~~~~~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~----~~k~y~lP~iv~~y~~~~~~~~ 528 (607)
+|++++.+++.++|+..+....+...+ .++.+.+++.||.+|+++|++|++++ +++++ |+||++|+++
T Consensus 362 i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~--p~vv~~HG~~----- 434 (662)
T 3azo_A 362 VVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELP--PYVVMAHGGP----- 434 (662)
T ss_dssp EEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCC--CEEEEECSSS-----
T ss_pred EEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCc--cEEEEECCCC-----
Confidence 999999899999998776544444445 78999999999999999999999876 45545 9999988642
Q ss_pred cCCccccCCCcCC-CCCCchhHHHhccCeEEEeCCCCc-eeccCCC----CchhhHHHHhhcHHHHHHHHHHhccccccc
Q 007338 529 AAGQVRGSPNEFS-GMTPTSSLIFLARRFAVLAGPSIP-IIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDT 602 (607)
Q Consensus 529 ~~~~~~g~p~~~~-~~~~~~~q~la~~GY~Vl~~~~~~-~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 602 (607)
.... ..+....+.|+++||+|+. ++.+ +.|+|.. ....|....++|++++|++|++++.+|.++
T Consensus 435 ---------~~~~~~~~~~~~~~l~~~G~~v~~-~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~ 504 (662)
T 3azo_A 435 ---------TSRVPAVLDLDVAYFTSRGIGVAD-VNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRAR 504 (662)
T ss_dssp ---------SSCCCCSCCHHHHHHHTTTCEEEE-EECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTC
T ss_pred ---------CccCcccchHHHHHHHhCCCEEEE-ECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhh
Confidence 1111 1112346899999999998 3331 1113332 123344566899999999999999999876
Q ss_pred c
Q 007338 603 L 603 (607)
Q Consensus 603 ~ 603 (607)
+
T Consensus 505 i 505 (662)
T 3azo_A 505 L 505 (662)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=270.58 Aligned_cols=402 Identities=15% Similarity=0.075 Sum_probs=263.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...++||||++|||.+.+ ++..+||.+ ++|+.+++|...... +..+.|||| +++|......
T Consensus 23 ~~~~~~~~~DG~~la~~s~~-------~g~~~lw~~--~~g~~~~lt~~~~~~----~~~~~~spd-~~l~~~~~~~--- 85 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFS-------EGSVNAYLY--DGGETVKLNREPINS----VLDPHYGVG-RVILVRDVSK--- 85 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEE-------TTEEEEEEE--ETTEEEECCSSCCSE----ECEECTTCS-EEEEEEECST---
T ss_pred chheeecCCCCCeEEEEEcc-------CCceeEEEE--cCCCcEeeecccccc----cccccCCCC-eEEEEeccCC---
Confidence 36788999999999999875 456778875 688999998665322 568899999 7777642100
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC--CCCeeecCCCCceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTPAVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~lt~~~~~~~~~~SpDg~~i 189 (607)
+. ...+||.+++ +|...+++........+|||||+.+
T Consensus 86 ------------------g~-----------------------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 86 ------------------GA-----------------------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV 124 (582)
T ss_dssp ------------------TS-----------------------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCE
T ss_pred ------------------CC-----------------------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeE
Confidence 00 1247888998 7766677655444467999999998
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
++++... ..+.+||+++++.++++..+ . ..+.|||||+. |++.....++
T Consensus 125 ~~~s~~~------------~~~~l~d~~~g~~~~l~~~~--------------~-~~~~~spDG~~-la~~~~~~~~--- 173 (582)
T 3o4h_A 125 VFTGATE------------DRVALYALDGGGLRELARLP--------------G-FGFVSDIRGDL-IAGLGFFGGG--- 173 (582)
T ss_dssp EEEEECS------------SCEEEEEEETTEEEEEEEES--------------S-CEEEEEEETTE-EEEEEEEETT---
T ss_pred EEEecCC------------CCceEEEccCCcEEEeecCC--------------C-ceEEECCCCCE-EEEEEEcCCC---
Confidence 8886532 13457899999888886521 1 46899999995 4444322111
Q ss_pred cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--cccc
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFE 347 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~ 347 (607)
...+++++. .+| +.+.|+........++|||||+.|+.. ...+..+||++|++++ +.+.+.. ..+.
T Consensus 174 -----~~~i~~~d~--~~g-~~~~l~~~~~~~~~~~~SpDG~~l~~~--~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~ 241 (582)
T 3o4h_A 174 -----RVSLFTSNL--SSG-GLRVFDSGEGSFSSASISPGMKVTAGL--ETAREARLVTVDPRDG--SVEDLELPSKDFS 241 (582)
T ss_dssp -----EEEEEEEET--TTC-CCEEECCSSCEEEEEEECTTSCEEEEE--ECSSCEEEEEECTTTC--CEEECCCSCSHHH
T ss_pred -----CeEEEEEcC--CCC-CceEeecCCCccccceECCCCCEEEEc--cCCCeeEEEEEcCCCC--cEEEccCCCcChh
Confidence 134777774 334 667777666667899999999987732 2234468999999984 4453322 1222
Q ss_pred ccccCCCCCCee--------eCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccc
Q 007338 348 NVYSDPGSPMMT--------RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 419 (607)
Q Consensus 348 ~~~~~~~~~~~~--------~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 419 (607)
. +. |+||| .+++....++ ...+| ++ |+..+. . .
T Consensus 242 ~---------~~~~~~~~~~~spdg-~~~~~~~~~g--~~~l~------------------~~--g~~~~~--~-----~ 282 (582)
T 3o4h_A 242 S---------YRPTAITWLGYLPDG-RLAVVARREG--RSAVF------------------ID--GERVEA--P-----Q 282 (582)
T ss_dssp H---------HCCSEEEEEEECTTS-CEEEEEEETT--EEEEE------------------ET--TEEECC--C-----S
T ss_pred h---------hhhccccceeEcCCC-cEEEEEEcCC--cEEEE------------------EE--CCeecc--C-----C
Confidence 2 45 99999 5666654432 33333 22 332211 0 0
Q ss_pred eeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcc---cCC-ceEEEEEECCCCceE
Q 007338 420 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL---ASL-QKEMIKYQRKDGVPL 495 (607)
Q Consensus 420 ~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~---~~~-~~e~i~~~s~DG~~i 495 (607)
..+.. .+++ | +.++++.++...|+++|+++..+ +.++| . ... ..+ ..|.++|++.||.+|
T Consensus 283 ~~v~~-------~~~s-d-g~~l~~~s~~~~p~~l~~~d~~~-~~~~l-~-----~~~~~~~~~~~~~~~~~~~~~g~~i 346 (582)
T 3o4h_A 283 GNHGR-------VVLW-R-GKLVTSHTSLSTPPRIVSLPSGE-PLLEG-G-----LPEDLRRSIAGSRLVWVESFDGSRV 346 (582)
T ss_dssp SEEEE-------EEEE-T-TEEEEEEEETTEEEEEEEETTCC-EEECC-C-----CCHHHHHTEEEEEEEEEECTTSCEE
T ss_pred CceEE-------EEec-C-CEEEEEEcCCCCCCeEEEEcCCC-ceEEE-e-----cCCccccccCcceEEEEECCCCCEE
Confidence 11212 2456 5 45668889999999999999765 66666 1 122 334 889999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce-eccCCC--
Q 007338 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI-IGEGLW-- 572 (607)
Q Consensus 496 ~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~-~g~g~~-- 572 (607)
++++++|+++++ +.|+||++|++... .....+....+.|+++||+|+. ++.+- .|+|..
T Consensus 347 ~~~~~~p~~~~~----~~p~vv~~HG~~~~-------------~~~~~~~~~~~~l~~~G~~v~~-~d~rG~~~~G~s~~ 408 (582)
T 3o4h_A 347 PTYVLESGRAPT----PGPTVVLVHGGPFA-------------EDSDSWDTFAASLAAAGFHVVM-PNYRGSTGYGEEWR 408 (582)
T ss_dssp EEEEEEETTSCS----SEEEEEEECSSSSC-------------CCCSSCCHHHHHHHHTTCEEEE-ECCTTCSSSCHHHH
T ss_pred EEEEEcCCCCCC----CCcEEEEECCCccc-------------ccccccCHHHHHHHhCCCEEEE-eccCCCCCCchhHH
Confidence 999999998764 34999998864211 0011112346899999999998 44422 123332
Q ss_pred --CchhhHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 573 --SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 573 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
....+....++|+.+++++|++++.+|.=-|+-||
T Consensus 409 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~i~l~G~S 445 (582)
T 3o4h_A 409 LKIIGDPCGGELEDVSAAARWARESGLASELYIMGYS 445 (582)
T ss_dssp HTTTTCTTTHHHHHHHHHHHHHHHTTCEEEEEEEEET
T ss_pred hhhhhhcccccHHHHHHHHHHHHhCCCcceEEEEEEC
Confidence 23344556789999999999999988833344443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=278.49 Aligned_cols=462 Identities=12% Similarity=0.035 Sum_probs=274.9
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce---eecccC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFES 80 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~---~~lt~~ 80 (607)
.|++.++. +|+.++++..... ..+..++|||||++|||.+..... --......|+++|+++|+. ++++
T Consensus 37 ~i~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~~~~~~~l~-- 109 (719)
T 1z68_A 37 NIVLYNIE----TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIYDLSNGEFVRGNELP-- 109 (719)
T ss_dssp CEEEEESS----SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEECCSSCCC--
T ss_pred CEEEEEcC----CCcEEEEEccccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEEECCCCccccceecC--
Confidence 58888987 8888888732110 027899999999999998763100 0001247899999999988 6663
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.. +..+.|||||+.|++.. ...|+
T Consensus 110 -~~-----~~~~~~SPDG~~la~~~--------------------------------------------------~~~i~ 133 (719)
T 1z68_A 110 -RP-----IQYLCWSPVGSKLAYVY--------------------------------------------------QNNIY 133 (719)
T ss_dssp -SS-----BCCEEECSSTTCEEEEE--------------------------------------------------TTEEE
T ss_pred -cc-----cccceECCCCCEEEEEE--------------------------------------------------CCeEE
Confidence 21 56899999988666641 12455
Q ss_pred EEeC-CCCeeecCCCC--------------------ceeeeeeCCCCceEEEEEccCCCcccc-----------------
Q 007338 161 LGSL-DGTAKDFGTPA--------------------VYTAVEPSPDQKYVLITSMHRPYSYKV----------------- 202 (607)
Q Consensus 161 ~~~~-~g~~~~lt~~~--------------------~~~~~~~SpDg~~i~~~~~~~~~~~~~----------------- 202 (607)
++++ +|+.++++..+ ....++|||||++|++.+.+.......
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 5666 44555554321 113789999999999987542110000
Q ss_pred -C---CCcCCccEEEEeCCCCeeE---EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCC
Q 007338 203 -P---CARFSQKVQVWTTDGKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR 275 (607)
Q Consensus 203 -~---~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~ 275 (607)
| .......|++||+++++.. ++.. +..+.........++||||++ +++....... ..
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~SpD~~--~~~~~~~~~~-------~~ 277 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV-------PAMIASSDYYFSWLTWVTDER--VCLQWLKRVQ-------NV 277 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCC-------CHHHHTSCEEEEEEEESSSSE--EEEEEEESST-------TE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccC-------CccCCCCcceEEEeEEeCCCe--EEEEEecccc-------Ce
Confidence 0 0001237899999987642 3311 000000001123589999964 3333211111 11
Q ss_pred ceEEecc----CCCCCCCCceeee-----ecCcccc-----eeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEe
Q 007338 276 DIIYTQP----AEPAEGEKPEILH-----KLDLRFR-----SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 276 ~~~~~~~----~~~~~g~~~~~l~-----~~~~~~~-----~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l 341 (607)
..+++++ . .+| +...+. .....+. .+.|||||+.|++......+..+||++|++++ +.+.|
T Consensus 278 ~~l~~~d~~~~~--~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~l 352 (719)
T 1z68_A 278 SVLSICDFREDW--QTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQI 352 (719)
T ss_dssp EEEEEEEECSSS--SSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEEC
T ss_pred EEEEEEcccCCC--CCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEec
Confidence 3466665 3 222 333333 1222233 78999999876664333445679999999883 45666
Q ss_pred eeccc--cccccCCCCCCeeeCCCCCEEEEEeee--ccCcCcEEEEeecCCCCCCCcceeEeeecCCC--CeeEEeecCC
Q 007338 342 FDRVF--ENVYSDPGSPMMTRTSTGTNVIAKIKK--ENDEQIYILLNGRGFTPEGNIPFLDLFDINTG--SKERIWESNR 415 (607)
Q Consensus 342 ~~~~~--~~~~~~~~~~~~~~~~dg~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g--~~~~l~~~~~ 415 (607)
+.... .. +.+. +|+.|++.... .......+| +++++++ +.+.|+....
T Consensus 353 t~~~~~v~~---------~~~~-d~~~i~~~~~~~~~~~~~~~l~----------------~~~~~~g~~~~~~l~~~~~ 406 (719)
T 1z68_A 353 TSGKWEAIN---------IFRV-TQDSLFYSSNEFEEYPGRRNIY----------------RISIGSYPPSKKCVTCHLR 406 (719)
T ss_dssp SCSSSCEEE---------EEEE-CSSEEEEEESCGGGCTTCBEEE----------------EEECSSSSCCEEESSTTTT
T ss_pred ccCceEEEE---------EEEE-eCCEEEEEEecCCCCCceEEEE----------------EEeCCCCCCCceeccCccC
Confidence 53322 22 3334 88888887753 111123343 4555444 2344432100
Q ss_pred cccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCC---CcccCC-ceEEEEEECCC
Q 007338 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY---PTLASL-QKEMIKYQRKD 491 (607)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~---~~~~~~-~~e~i~~~s~D 491 (607)
. ....+. ..+|++|++.++++.++.+.| .++++++.+++..+++..+... .+...+ .+|.+++++.|
T Consensus 407 ~-~~~~~~-------~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (719)
T 1z68_A 407 K-ERCQYY-------TASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE 477 (719)
T ss_dssp T-TTBCBE-------EEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT
T ss_pred C-CCCceE-------EEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC
Confidence 0 000111 135789999999998888877 5889998888877777664321 222334 78999999988
Q ss_pred CceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhH-HHhccCeEEEeCCCCceeccC
Q 007338 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL-IFLARRFAVLAGPSIPIIGEG 570 (607)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q-~la~~GY~Vl~~~~~~~~g~g 570 (607)
.+|++++++|+++++++++ |+||++|++..+ ......| .....+ +++++||+|+. ++. +|.|
T Consensus 478 -~~l~~~~~~P~~~~~~~~~--p~vl~~hG~~~~--------~~~~~~~---~~~~~~~l~~~~G~~v~~-~d~--rG~g 540 (719)
T 1z68_A 478 -ITLWYKMILPPQFDRSKKY--PLLIQVYGGPCS--------QSVRSVF---AVNWISYLASKEGMVIAL-VDG--RGTA 540 (719)
T ss_dssp -EEEEEEEEECTTCCSSSCE--EEEEEECCCTTB--------CCCCCCC---CCCHHHHHHHTTCCEEEE-EEC--TTBS
T ss_pred -eEEEEEEEeCCCCCCCCCc--cEEEEECCCCCc--------Ccccccc---hhhHHHHHHhcCCeEEEE-EcC--CCCC
Confidence 9999999999998876655 999998864211 0001111 112234 44589999998 443 3333
Q ss_pred CC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 571 LW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 571 ~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.. ....|+.....|+++++++|++++.+|.+++
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i 580 (719)
T 1z68_A 541 FQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRI 580 (719)
T ss_dssp SSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceE
Confidence 32 1223455778999999999999998888764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-27 Score=265.43 Aligned_cols=414 Identities=14% Similarity=0.059 Sum_probs=255.2
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCC---C--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPD---G--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~---~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (607)
..||+.+.. +++.++|+.... . ..+..++|||||++|||+..... .....|+++|+++|+..+...
T Consensus 94 ~~l~~~~~~----~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G-----~~~~~i~v~dl~tg~~~~~~~ 164 (695)
T 2bkl_A 94 AILYWRQGE----SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNA-----ADEAVLHVIDVDSGEWSKVDV 164 (695)
T ss_dssp CEEEEEEST----TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETT-----CSCCEEEEEETTTCCBCSSCC
T ss_pred EEEEEEcCC----CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCC-----CceEEEEEEECCCCCCcCCcc
Confidence 457888765 777888874211 1 14788999999999999987521 234799999999998651211
Q ss_pred CCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceE
Q 007338 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (607)
Q Consensus 80 ~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (607)
.... ....+.|+||++.|+++....... +.. . . . ....+|
T Consensus 165 ~~~~----~~~~~~wspDg~~l~~~~~d~~~~------------------~~~-----~-~-------~-----~~~~~v 204 (695)
T 2bkl_A 165 IEGG----KYATPKWTPDSKGFYYEWLPTDPS------------------IKV-----D-E-------R-----PGYTTI 204 (695)
T ss_dssp BSCC----TTCCCEECTTSSEEEEEECCCCTT------------------SCG-----G-G-------G-----GGGCEE
T ss_pred cCcc----cccceEEecCCCEEEEEEecCCCC------------------Ccc-----c-c-------C-----CCCCEE
Confidence 1211 136899999988777754221100 000 0 0 0 024689
Q ss_pred EEEeC-CCC--eeecCCC----CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCC
Q 007338 160 VLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (607)
Q Consensus 160 ~~~~~-~g~--~~~lt~~----~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (607)
|++++ +++ .+.+... ..+..+.|||||++|++.+..... ..+||+++..+++.+.|..
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---------~~~l~~~~~~~~~~~~l~~------ 269 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS---------ENDVYWKRPGEKDFRLLVK------ 269 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT---------EEEEEEECTTCSSCEEEEE------
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC---------ceEEEEEcCCCCceEEeec------
Confidence 99998 554 2333221 245688999999999998754210 2378888766554444321
Q ss_pred CCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE
Q 007338 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~ 312 (607)
.......+.| +||.
T Consensus 270 ----------------------------------------------------------------~~~~~~~~~~-~~g~- 283 (695)
T 2bkl_A 270 ----------------------------------------------------------------GVGAKYEVHA-WKDR- 283 (695)
T ss_dssp ----------------------------------------------------------------CSSCCEEEEE-ETTE-
T ss_pred ----------------------------------------------------------------CCCceEEEEe-cCCc-
Confidence 0011123445 5666
Q ss_pred EEEEEeccccceEEEEEcCCCCCC-CceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCC
Q 007338 313 LVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 391 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~ 391 (607)
+++..+.+....+|+++|+++++. ..+.++.......+.. +.|+ + ..+++....++ ...+
T Consensus 284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~-----~~~~-~-~~lv~~~~~dg--~~~l---------- 344 (695)
T 2bkl_A 284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS-----VSIV-G-GHLSLEYLKDA--TSEV---------- 344 (695)
T ss_dssp EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE-----EEEE-T-TEEEEEEEETT--EEEE----------
T ss_pred EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE-----EEEE-C-CEEEEEEEECC--EEEE----------
Confidence 666554443467999999987421 1255543211111111 5565 3 34555544322 2222
Q ss_pred CCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCC
Q 007338 392 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (607)
Q Consensus 392 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~ 471 (607)
..++++++..+.+.-.. ...+. ..++++|++.++++.++...|+++|++++.+++.+.|+..+
T Consensus 345 ------~~~~~~g~~~~~l~~~~----~~~v~-------~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~ 407 (695)
T 2bkl_A 345 ------RVATLKGKPVRTVQLPG----VGAAS-------NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVD 407 (695)
T ss_dssp ------EEEETTCCEEEECCCSS----SSEEC-------CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECC
T ss_pred ------EEEeCCCCeeEEecCCC----CeEEE-------EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCC
Confidence 24555333233331000 01111 13567888999999999999999999999888888888764
Q ss_pred CCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHH
Q 007338 472 HPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF 551 (607)
Q Consensus 472 ~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~l 551 (607)
.. .+.....++.+.|++.||.+|+++|++|+++++++++ |+||++|+++.. ...+ .| ....+.|
T Consensus 408 ~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~--p~vl~~hGg~~~--------~~~~-~~----~~~~~~l 471 (695)
T 2bkl_A 408 VP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNA--PTLLYGYGGFNV--------NMEA-NF----RSSILPW 471 (695)
T ss_dssp CS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCC--CEEEECCCCTTC--------CCCC-CC----CGGGHHH
T ss_pred CC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCCCCCCCc--cEEEEECCCCcc--------ccCC-Cc----CHHHHHH
Confidence 32 3333348999999999999999999999998765544 999998864211 0001 11 1235789
Q ss_pred hccCeEEEeCCCCceeccCCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 552 LARRFAVLAGPSIPIIGEGLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 552 a~~GY~Vl~~~~~~~~g~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+++||+|+. ++. +|.|+. ....+.....+|+++++++|++++++|.+++
T Consensus 472 ~~~G~~v~~-~d~--rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i 527 (695)
T 2bkl_A 472 LDAGGVYAV-ANL--RGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRL 527 (695)
T ss_dssp HHTTCEEEE-ECC--TTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGE
T ss_pred HhCCCEEEE-Eec--CCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccE
Confidence 999999998 443 333321 2223456778999999999999999998875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-27 Score=264.13 Aligned_cols=417 Identities=13% Similarity=0.067 Sum_probs=257.2
Q ss_pred eeEEEeccCCCCCCCeeeeec---CCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHG---YPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~---~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
.||+.++. +++.+.|+. +... ..+..++|||||++|||...... ....+|+++|+++|+..+++..
T Consensus 99 ~l~~~~~~----~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G-----~~~~~i~v~d~~tg~~~~~~~~ 169 (710)
T 2xdw_A 99 VLYVQDSL----EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG-----SDWVTIKFMKVDGAKELPDVLE 169 (710)
T ss_dssp EEEEESST----TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT-----CSCEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCC----CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC-----CceEEEEEEECCCCCCCccccc
Confidence 67877765 566666642 2222 14678999999999999987521 2235999999999998775422
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.. .+..+.||||++.|+++........ ..+.. . . .....+||
T Consensus 170 ~~-----~~~~~~wspDg~~l~~~~~~~~~~~---------------~~~~~----------~----~----~~~~~~v~ 211 (710)
T 2xdw_A 170 RV-----KFSCMAWTHDGKGMFYNAYPQQDGK---------------SDGTE----------T----S----TNLHQKLY 211 (710)
T ss_dssp EE-----CSCCEEECTTSSEEEEEECCCCSSC---------------CSSSC----------C----C----CCCCCEEE
T ss_pred Cc-----ccceEEEEeCCCEEEEEEECCcccc---------------ccccc----------c----c----cCCCCEEE
Confidence 11 1467999999887776543211000 00000 0 0 01245899
Q ss_pred EEeC-CCCe--eec-CC---CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC------C--eeEEec
Q 007338 161 LGSL-DGTA--KDF-GT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------K--LVRELC 225 (607)
Q Consensus 161 ~~~~-~g~~--~~l-t~---~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------~--~~~~l~ 225 (607)
++++ +++. +.+ .. +.....+.|||||++|++.+..... ...+||++|+++ + ..+.|.
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD--------PVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS--------SCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC--------CccEEEEEECcccccccCCccceEEee
Confidence 9998 4542 233 22 1234688999999999998753210 024789999875 3 122221
Q ss_pred cCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceee
Q 007338 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS 305 (607)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ 305 (607)
...... ...
T Consensus 284 ----------------------------------------------------------------------~~~~~~-~~~ 292 (710)
T 2xdw_A 284 ----------------------------------------------------------------------DNFEGE-YDY 292 (710)
T ss_dssp ----------------------------------------------------------------------CSSSSC-EEE
T ss_pred ----------------------------------------------------------------------CCCCcE-EEE
Confidence 110011 135
Q ss_pred EcCCCcEEEEEEeccccceEEEEEcCCCCCC-CceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEe
Q 007338 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (607)
Q Consensus 306 ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~ 384 (607)
|++||..|++..+.+..+.+|+++|+++++. ..+.|+...-...+.. +.|++++ .+++.....+ ...+
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~-~lv~~~~~~g--~~~l--- 361 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW-----VACVRSN-FLVLCYLHDV--KNTL--- 361 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEE-----EEEETTT-EEEEEEEETT--EEEE---
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEE-----EEEEcCC-EEEEEEEECC--EEEE---
Confidence 8888887777665444467899999987421 2355543211001111 6677544 4555544322 1223
Q ss_pred ecCCCCCCCcceeEeeecCCCCe-eEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCc
Q 007338 385 GRGFTPEGNIPFLDLFDINTGSK-ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (607)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~ 463 (607)
..+++++|+. +.|.... ..+.. .+++++++.++++.++.+.|+++|++++.+++
T Consensus 362 -------------~~~~~~~g~~~~~l~~~~-----~~v~~-------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 -------------QLHDLATGALLKIFPLEV-----GSVVG-------YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -------------EEEETTTCCEEEEECCCS-----SEEEE-------EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -------------EEEECCCCCEEEecCCCC-----ceEEE-------EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3456655553 3332110 11222 24677888999999999999999999998887
Q ss_pred --eeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCC
Q 007338 464 --SSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS 541 (607)
Q Consensus 464 --~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~ 541 (607)
.+.|........+.....+|.+.|++.||.+|+++|++|+++++++++ |+||++|+++ ....
T Consensus 417 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~--P~vl~~hGg~--------------~~~~ 480 (710)
T 2xdw_A 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH--PAFLYGYGGF--------------NISI 480 (710)
T ss_dssp CCCEEEEECCCTTCCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCS--CEEEECCCCT--------------TCCC
T ss_pred cceEEeeecccCCcCccccEEEEEEEEcCCCCEEEEEEEecCCCCCCCCc--cEEEEEcCCC--------------CCcC
Confidence 666766432212333348899999999999999999999998765544 9999988642 1111
Q ss_pred CCCC-chhHHHhc-cCeEEEeCCCCceeccCCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 542 GMTP-TSSLIFLA-RRFAVLAGPSIPIIGEGLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 542 ~~~~-~~~q~la~-~GY~Vl~~~~~~~~g~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.+.+ ...+.|++ +||+|+. ++. +|.|+. ....+.+...+|+++++++|++++++|.+++
T Consensus 481 ~~~~~~~~~~l~~~~G~~v~~-~d~--rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i 548 (710)
T 2xdw_A 481 TPNYSVSRLIFVRHMGGVLAV-ANI--RGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRL 548 (710)
T ss_dssp CCCCCHHHHHHHHHHCCEEEE-ECC--TTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGE
T ss_pred CCcccHHHHHHHHhCCcEEEE-Ecc--CCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceE
Confidence 1112 22567888 9999998 443 343332 1223445678999999999999999998875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=264.00 Aligned_cols=387 Identities=13% Similarity=0.081 Sum_probs=247.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+..++|||||++|||+..... .....|+++|+++|+..+.+. ... ....+.|+ |++.||++...+...
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G-----~~~~~i~v~dl~tg~~~~~~~-~~~----k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAG-----SDWREIHLMDVESKQPLETPL-KDV----KFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSS-----CCEEEEEEEETTTCSEEEEEE-EEE----ESCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEEECCCCCEEEEEEecCC-----CceEEEEEEECCCCCCCcccc-CCc----eeccEEEe-CCCEEEEEEecCccc
Confidence 3677899999999999987521 334899999999999766531 110 13678999 977666653221000
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC--eeecCCC-C----ceeeeeeC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTP-A----VYTAVEPS 183 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~lt~~-~----~~~~~~~S 183 (607)
+. ... .....+||+.++ +++ .+.|... . ....+.||
T Consensus 199 ------------------~~------~~~------------~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 199 ------------------SE------LSA------------RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT 242 (693)
T ss_dssp ------------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC
T ss_pred ------------------cc------ccc------------cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc
Confidence 00 000 002457888888 442 3444322 1 34578999
Q ss_pred CCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC--eeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 184 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
|||++|++....... ..+||++|++++ +.+.|+.
T Consensus 243 pDg~~l~~~~~~~~~---------~~~i~~~d~~~~~~~~~~l~~----------------------------------- 278 (693)
T 3iuj_A 243 EDDRFLLISAANSTS---------GNRLYVKDLSQENAPLLTVQG----------------------------------- 278 (693)
T ss_dssp TTSCEEEEEEESSSS---------CCEEEEEETTSTTCCCEEEEC-----------------------------------
T ss_pred CCCCEEEEEEccCCC---------CcEEEEEECCCCCCceEEEeC-----------------------------------
Confidence 999999998653211 247999998765 2232221
Q ss_pred eecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCC-CceE
Q 007338 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRV 340 (607)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~-~~~~ 340 (607)
.......+ |+++|..|++..+.+..+.+|+.+|+++++. +.+.
T Consensus 279 -----------------------------------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~ 322 (693)
T 3iuj_A 279 -----------------------------------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD 322 (693)
T ss_dssp -----------------------------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred -----------------------------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence 00011112 6777777766665544567999999988421 1244
Q ss_pred eeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccce
Q 007338 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (607)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (607)
++...-.. +.|+++++.|++.....+ ... |..++++++..+.+.-.. ..
T Consensus 323 l~~~~~~~---------~~~s~~g~~lv~~~~~~g--~~~----------------l~~~d~~g~~~~~l~~p~----~~ 371 (693)
T 3iuj_A 323 LIPERQQV---------LTVHSGSGYLFAEYMVDA--TAR----------------VEQFDYEGKRVREVALPG----LG 371 (693)
T ss_dssp EECCCSSC---------EEEEEETTEEEEEEEETT--EEE----------------EEEECTTSCEEEEECCSS----SS
T ss_pred EecCCCCE---------EEEEEECCEEEEEEEECC--eeE----------------EEEEECCCCeeEEeecCC----Cc
Confidence 54322111 367888888887765432 112 234566555444442111 11
Q ss_pred eeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEE
Q 007338 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLY 500 (607)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~ 500 (607)
.+.. .+++++++.+++..++.++|+++|.+++.+++.+.|+..+. ..+.....+|.+.+++.||.+|+++|+
T Consensus 372 ~~~~-------~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~dg~~i~~~l~ 443 (693)
T 3iuj_A 372 SVSG-------FNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAA-PFKPEDYVSEQRFYQSKDGTRVPLIIS 443 (693)
T ss_dssp EEEE-------CCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCS-SCCGGGEEEEEEEEECTTSCEEEEEEE
T ss_pred eEEe-------eecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCC-CcChhhCeeEEEEEecCCCcEEEEEEE
Confidence 1111 24567889999999999999999999998888888887753 233333489999999999999999999
Q ss_pred cCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEEeCCCCceeccCCC-------
Q 007338 501 LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGPSIPIIGEGLW------- 572 (607)
Q Consensus 501 ~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl~~~~~~~~g~g~~------- 572 (607)
+|++++++++ .|+||++|+++ .....+.+ ...+.|+++||+|+. ++. +|.|+.
T Consensus 444 ~p~~~~~~~~--~P~ll~~hGg~--------------~~~~~~~~~~~~~~l~~~G~~v~~-~d~--RG~g~~g~~~~~~ 504 (693)
T 3iuj_A 444 YRKGLKLDGS--NPTILYGYGGF--------------DVSLTPSFSVSVANWLDLGGVYAV-ANL--RGGGEYGQAWHLA 504 (693)
T ss_dssp EESSCCCSSC--CCEEEECCCCT--------------TCCCCCCCCHHHHHHHHTTCEEEE-ECC--TTSSTTCHHHHHT
T ss_pred ecCCCCCCCC--ccEEEEECCCC--------------CcCCCCccCHHHHHHHHCCCEEEE-EeC--CCCCccCHHHHHh
Confidence 9999876554 49999998641 11111112 235799999999998 443 343321
Q ss_pred CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 573 SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 573 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
....+.....+|++++++||++++++|.+++
T Consensus 505 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 535 (693)
T 3iuj_A 505 GTQQNKQNVFDDFIAAAEYLKAEGYTRTDRL 535 (693)
T ss_dssp TSGGGTHHHHHHHHHHHHHHHHTTSCCGGGE
T ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCcceE
Confidence 2233445678899999999999999999886
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=260.02 Aligned_cols=384 Identities=13% Similarity=0.084 Sum_probs=235.4
Q ss_pred cccceEEc-cCCCEEEEEeecCcccccCCCceeEEEEECCCC-ceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 32 KINFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~S-PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
....++|| |||++|||+..... ....+||++|+++| +. ++.. +......+.|+||++.|+++.....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G-----~~~~~l~v~dl~~g~~~--l~~~----~~~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSG-----NEVYTIEFKRISDPSQT--IADK----VSGTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSS-----SSCEEEEEEETTCTTCC--CCCC----EEEECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCC-----CceEEEEEEECCCCCEe--CCcc----ccCceeeEEEecCCCEEEEEEECCC
Confidence 35789999 99999999987521 23467999999999 62 2211 1111468999999876565421100
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC--eeec---CCCCceeeeeeC
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDF---GTPAVYTAVEPS 183 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l---t~~~~~~~~~~S 183 (607)
+ ...+||++++ +++ .+.+ ........+.||
T Consensus 244 --------------------~------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 244 --------------------L------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp --------------------C------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred --------------------C------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 0 1247888888 443 2233 222345678999
Q ss_pred CCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC--ee--EEeccCCCCCCCCcccccccCCCCcceeecCCCceEEE
Q 007338 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (607)
Q Consensus 184 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~ 259 (607)
|||++|++...... ..+||++|++++ +. +.|..
T Consensus 280 pDg~~l~~~~~~~~----------~~~l~~~d~~~~~~~~~~~~l~~--------------------------------- 316 (751)
T 2xe4_A 280 ADTNTLCIGSQSPE----------TAEVHLLDLRKGNAHNTLEIVRP--------------------------------- 316 (751)
T ss_dssp TTSSEEEEEEECSS----------CEEEEEEESSSCTTCCCEEESSC---------------------------------
T ss_pred CCCCEEEEEecCCC----------CceEEEEECCCCCCCceeEEeec---------------------------------
Confidence 99999999975321 347999998765 22 22211
Q ss_pred EEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc-ccceEEEEEcCCCCCCCc
Q 007338 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWLVCPGSKDVAP 338 (607)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~~l~~~dl~~~~~~~ 338 (607)
........+.|+ +|..|++.++.+ .++.+||++++++. ++.
T Consensus 317 ------------------------------------~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~ 358 (751)
T 2xe4_A 317 ------------------------------------REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQP-SDW 358 (751)
T ss_dssp ------------------------------------CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTST-TCC
T ss_pred ------------------------------------CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCc-ccc
Confidence 000001112232 255565555443 45679999998753 233
Q ss_pred eE-eeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeec-------CCCC-eeE
Q 007338 339 RV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI-------NTGS-KER 409 (607)
Q Consensus 339 ~~-l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~-------~~g~-~~~ 409 (607)
+. ++.......+ ..++.+++.|++.....+ ...++ .+++ ++++ .+.
T Consensus 359 ~~~li~~~~~~~l-------~~~~~~~~~lv~~~~~~g--~~~l~----------------~~dl~~~~~~~~~g~~~~~ 413 (751)
T 2xe4_A 359 SHVLVDHSEDVFM-------ESIAVRSNYLVVAGRRAG--LTRIW----------------TMMADSQDGVFKAGTGLRE 413 (751)
T ss_dssp CCEEECCCSSEEE-------EEEEECSSEEEEEEEETT--EEEEE----------------EEECCTTTSCCCTTTCCEE
T ss_pred eeeEECCCCCcEE-------EEEEEECCEEEEEEEeCC--EEEEE----------------EEecccccccccCCccceE
Confidence 44 4322211101 223334667777665432 22232 3453 3455 444
Q ss_pred EeecCCcccceeeeeeecCCCcccc--cccCCEEEEEeecccccceEEEEecCCCceeeEecCCCC-CCcccCCceEEEE
Q 007338 410 IWESNREKYFETAVALVFGQGEEDI--NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP-YPTLASLQKEMIK 486 (607)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~--s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~-~~~~~~~~~e~i~ 486 (607)
|.-.. ......+. ... +.+++.+++++++.++|+++|.+++.+++.+.|+..+.+ ..+...+.+|.++
T Consensus 414 l~l~~----~~~~~~~~-----~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 484 (751)
T 2xe4_A 414 VVMEE----PIFTVHLV-----ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERRF 484 (751)
T ss_dssp CCCCC----SSCEEEEC-----GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGGEEEEEEE
T ss_pred ECCCC----ceeEEEec-----cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccceEEEEEE
Confidence 42111 00111111 011 457788999999999999999999988888888866432 2333334789999
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCC-CchhHHHhccCeEEEeCCCCc
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~-~~~~q~la~~GY~Vl~~~~~~ 565 (607)
|++.||.+|+++|++|+++++++++ |+||++|+++ ....... ....+.|+++||+|+. ++.
T Consensus 485 ~~s~dG~~i~~~l~~p~~~~~~~~~--P~vl~~HGg~--------------~~~~~~~~~~~~~~l~~~G~~v~~-~d~- 546 (751)
T 2xe4_A 485 ATAPDQTKIPLSVVYHKDLDMSQPQ--PCMLYGYGSY--------------GLSMDPQFSIQHLPYCDRGMIFAI-AHI- 546 (751)
T ss_dssp EECTTCCEEEEEEEEETTSCTTSCC--CEEEECCCCT--------------TCCCCCCCCGGGHHHHTTTCEEEE-ECC-
T ss_pred EECCCCcEEEEEEEcCCCCCCCCCc--cEEEEECCCC--------------CcCCCCcchHHHHHHHhCCcEEEE-Eee-
Confidence 9999999999999999998765555 9999988642 1111111 1246899999999998 443
Q ss_pred eeccCCC--------CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 566 IIGEGLW--------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 566 ~~g~g~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+|.|+. ....+.....+|++++++||++++++|.+++.
T Consensus 547 -RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 592 (751)
T 2xe4_A 547 -RGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLA 592 (751)
T ss_dssp -TTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEE
T ss_pred -CCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEE
Confidence 343331 12234457789999999999999999998863
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=253.29 Aligned_cols=414 Identities=15% Similarity=0.081 Sum_probs=248.4
Q ss_pred eeeEEEeccCCCCCCCeeeeec---CCCCC--cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHG---YPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~---~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (607)
..||+.++... .+++.++|+. +.... .+..++|||||++|||.+.... ....+|+++|+++|+..+.+.
T Consensus 133 ~~l~~~~~~~~-~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G-----~e~~~i~v~dl~tg~~~~~~~ 206 (741)
T 1yr2_A 133 SQLLVRPADAP-VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG-----SDWRTVKFVGVADGKPLADEL 206 (741)
T ss_dssp CEEEEEETTSC-TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT-----CSEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCcc-CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC-----CceEEEEEEECCCCCCCCccC
Confidence 45777775310 1456666642 12221 4778999999999999987521 233789999999998765521
Q ss_pred CCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceE
Q 007338 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (607)
Q Consensus 80 ~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (607)
... .+..+.|||| +.|+++....... + +. . . +. ....+|
T Consensus 207 -~~~----~~~~~~wspD-~~l~~~~~~~~~~---------~--------~~------~----~---~~-----~~~~~v 245 (741)
T 1yr2_A 207 -KWV----KFSGLAWLGN-DALLYSRFAEPKE---------G--------QA------F----Q---AL-----NYNQTV 245 (741)
T ss_dssp -EEE----ESCCCEESTT-SEEEEEECCCC--------------------------------------C-----CCCCEE
T ss_pred -CCc----eeccEEEECC-CEEEEEEecCccc---------c--------cc------c----c---cC-----CCCCEE
Confidence 110 1358999999 7666653221100 0 00 0 0 00 013578
Q ss_pred EEEeC-CCC--eeecCC-C---CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC--e-eEEeccCCC
Q 007338 160 VLGSL-DGT--AKDFGT-P---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--L-VRELCDLPP 229 (607)
Q Consensus 160 ~~~~~-~g~--~~~lt~-~---~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~-~~~l~~~~~ 229 (607)
|++++ +++ .+.+.. . ..+..+.|||||++|++.+..... ...+||++|++++ + .+.|..
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~l~~--- 314 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--------PVNTVHVARVTNGKIGPVTALIP--- 314 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC--------SCCEEEEEEEETTEECCCEEEEC---
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC--------CcceEEEEECCCCCCcccEEecC---
Confidence 88888 443 233322 1 135689999999999998753210 1247999998776 3 333321
Q ss_pred CCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCC
Q 007338 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (607)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~D 309 (607)
.......+ |+||
T Consensus 315 -------------------------------------------------------------------~~~~~~~~-~~~d 326 (741)
T 1yr2_A 315 -------------------------------------------------------------------DLKAQWDF-VDGV 326 (741)
T ss_dssp -------------------------------------------------------------------SSSSCEEE-EEEE
T ss_pred -------------------------------------------------------------------CCCceEEE-Eecc
Confidence 00001112 3478
Q ss_pred CcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCC
Q 007338 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (607)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~ 389 (607)
|..|++..+.+..+.+|+++|+++++.+.+.++...-. .+.. +.|+ ++.+++....++ ...+
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~-----~~~~--~~~lv~~~~~dg--~~~l-------- 388 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLES-----VGIA--GNRLFASYIHDA--KSQV-------- 388 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEE-----EEEE--BTEEEEEEEETT--EEEE--------
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEE-----EEEE--CCEEEEEEEECC--EEEE--------
Confidence 88777665544446789999988731123444422111 1111 4454 445555554322 2222
Q ss_pred CCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEec
Q 007338 390 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (607)
Q Consensus 390 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~ 469 (607)
..++++++..+.+.-.. ...+.. .++++|++.++|+.++...|+++|++++.+++.+.|..
T Consensus 389 --------~~~~~~g~~~~~l~~~~----~~~v~~-------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 389 --------LAFDLDGKPAGAVSLPG----IGSASG-------LSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp --------EEEETTSCEEEECBCSS----SCEEEE-------EECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC
T ss_pred --------EEEeCCCCceeeccCCC----CeEEEE-------eecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence 24555333333332110 111222 24678888999999999999999999998888776765
Q ss_pred CCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chh
Q 007338 470 FPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSS 548 (607)
Q Consensus 470 ~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~ 548 (607)
. ....+.....++.+.|++.||.+|+++|++|+++ ++ +.|+||++|+++ .....+.+ ...
T Consensus 450 ~-~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~--~~--~~p~vl~~hGg~--------------~~~~~~~~~~~~ 510 (741)
T 1yr2_A 450 V-HLTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KG--PLPTLLYGYGGF--------------NVALTPWFSAGF 510 (741)
T ss_dssp C-CCSSCGGGEEEEEEEEECTTSCEEEEEEEEETTC--CS--CCCEEEECCCCT--------------TCCCCCCCCHHH
T ss_pred C-CCCCChhHCEEEEEEEEcCCCCEEEEEEEecCCC--CC--CCcEEEEECCCC--------------CccCCCCcCHHH
Confidence 3 2222333348899999999999999999999987 23 349999988642 11111112 235
Q ss_pred HHHhccCeEEEeCCCCceeccCCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 549 LIFLARRFAVLAGPSIPIIGEGLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+.|+++||+|+. ++. +|.|+. ....+.....+|+++++++|++++++|.+++
T Consensus 511 ~~l~~~G~~v~~-~d~--rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ri 569 (741)
T 1yr2_A 511 MTWIDSGGAFAL-ANL--RGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGL 569 (741)
T ss_dssp HHHHTTTCEEEE-ECC--TTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTTCE
T ss_pred HHHHHCCcEEEE-Eec--CCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHE
Confidence 789999999998 443 343332 1223345678999999999999999998875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=184.42 Aligned_cols=344 Identities=12% Similarity=0.093 Sum_probs=197.0
Q ss_pred CCCeeeeecCCCC---CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEE
Q 007338 18 LGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW 94 (607)
Q Consensus 18 ~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W 94 (607)
+++.++|+..... ....+|+|||||++|||.+.. ++..+||++|+++|+.+++|...... ...+.|
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-------~g~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~ 88 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF-------DGPWNYYLLDLNTQVATQLTEGRGDN----TFGGFL 88 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTCEEEECCCSSCBC----SSSCEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC-------CCCceEEEEeCCCCceEEeeeCCCCC----ccceEE
Confidence 6677888754321 123459999999999999864 45679999999999999998654321 236789
Q ss_pred ecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCC
Q 007338 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT 173 (607)
Q Consensus 95 spd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~ 173 (607)
|||++.|++... ...|+++++ +|+.+.+..
T Consensus 89 spdg~~l~~~~~-------------------------------------------------~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 89 SPDDDALFYVKD-------------------------------------------------GRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CTTSSEEEEEET-------------------------------------------------TTEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC-------------------------------------------------CCeEEEEECCCCcceeeee
Confidence 999887776420 136777888 566555432
Q ss_pred -CC-ce--eeeeeCCCCceEEEEEccCCC-ccccC--------CCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 174 -PA-VY--TAVEPSPDQKYVLITSMHRPY-SYKVP--------CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 174 -~~-~~--~~~~~SpDg~~i~~~~~~~~~-~~~~~--------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
+. .. ....++|||+.++........ ..... .......|+++|+++++.+.+...+
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------------ 187 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN------------ 187 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES------------
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC------------
Confidence 22 22 233459999998765422110 00000 0011257999999999888876411
Q ss_pred cCCCCcceeec-CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC--cccceeeEcCCCcEEEEEE
Q 007338 241 REGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 241 ~~~~~~~~wsp-dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~--~~~~~~~ws~Dg~~l~~~~ 317 (607)
.....+.||| ||+. |+|+... ..+ .....+++++. .+.+.+.+.... .....+.|||||+.|++..
T Consensus 188 -~~~~~~~~sp~dg~~-l~~~~~~-~~~-----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 188 -QWLGHPIYRPYDDST-VAFCHEG-PHD-----LVDARMWLINE---DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp -SCEEEEEEETTEEEE-EEEEECS-CTT-----TSSCSEEEEET---TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred -ccccccEECCCCCCE-EEEEEec-CCC-----CCcceEEEEeC---CCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence 1123589999 9984 5555431 110 11235666653 333555565443 2456789999999877655
Q ss_pred eccc-cceEEEEEcCCCCCCCceEeeeccc-cccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcc
Q 007338 318 WYKT-SQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 395 (607)
Q Consensus 318 ~~~~-~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~ 395 (607)
.... ....||++|+++ ++.+.+..... ......+.. ..|+|||+.|++...+.+ + + ......
T Consensus 257 ~~~~~~~~~l~~~d~~~--g~~~~l~~~~~~~~~~~~~~~--~~~spdg~~l~~~~~~~~--~---~-------~~~~~~ 320 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPET--LENRQLTSMPACSHLMSNYDG--SLMVGDGSDAPVDVQDDS--G---Y-------KIENDP 320 (388)
T ss_dssp EETTCCCEEEEEECTTT--CCEEEEEEECCEEEEEECTTS--SEEEEEECCC------------------------CCCC
T ss_pred cCCCCCcceEEEEecCC--CceEEEEcCCCceeeeecCCC--CeEccCCCcceeEeeecc--c---c-------ccCCCC
Confidence 4322 223599999998 45555542211 111111111 579999998887653210 0 0 001122
Q ss_pred eeEeeecCCCCeeEEeecCCcccceeeeee-ecCCCcccccccCCEEEEEeecccccceEEEEecCCCc
Q 007338 396 FLDLFDINTGSKERIWESNREKYFETAVAL-VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (607)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~ 463 (607)
.|+.+++++++.++|+..... ...+..- ........|+|||++|+|..... ..+.||+++++.+.
T Consensus 321 ~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 321 FLYVFNMKNGTQHRVARHDTS--WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPESV 386 (388)
T ss_dssp EEEEEETTTTEEEEEEECCCC--CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGGG
T ss_pred EEEEEeccCCceEEeccccCc--ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChhc
Confidence 355678888887777544310 0000000 00001247899999998876554 45679999986543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-18 Score=188.16 Aligned_cols=151 Identities=13% Similarity=-0.017 Sum_probs=114.0
Q ss_pred ccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCC
Q 007338 434 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPL 513 (607)
Q Consensus 434 ~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~l 513 (607)
.+++++.++++.++..+|+++|++++. ++.+.|+..+. ..+...+.+|.+.|++.||.+|+++|++|+++++++++
T Consensus 403 ~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~~-~~~~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~-- 478 (711)
T 4hvt_A 403 SYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKALY-SFDSENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKN-- 478 (711)
T ss_dssp CCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCSS-CCCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCC--
T ss_pred ecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCCc-ccCcccCeeEEEEEECCCCeEEEEEEEecCCCCCCCCc--
Confidence 456778899999999999999999987 77888887753 33334458999999999999999999999998766655
Q ss_pred CEEEEeccCCccCcccCCccccCCCcCCCCCCc-hh-HHHhccCeEEEeCCCCc-eeccCCC----CchhhHHHHhhcHH
Q 007338 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SS-LIFLARRFAVLAGPSIP-IIGEGLW----SNWFQVQRLLLKKL 586 (607)
Q Consensus 514 P~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~-~~-q~la~~GY~Vl~~~~~~-~~g~g~~----~~~~~~~~~~~~~~ 586 (607)
|+||++|+++ .....+.+. .. |.|+++||+|+. ++.+ +.++|.. ....+....++|++
T Consensus 479 P~vl~~HGG~--------------~~~~~~~~~~~~~q~la~~Gy~Vv~-~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~ 543 (711)
T 4hvt_A 479 PTLLEAYGGF--------------QVINAPYFSRIKNEVWVKNAGVSVL-ANIRGGGEFGPEWHKSAQGIKRQTAFNDFF 543 (711)
T ss_dssp CEEEECCCCT--------------TCCCCCCCCHHHHHHTGGGTCEEEE-ECCTTSSTTCHHHHHTTSGGGTHHHHHHHH
T ss_pred cEEEEECCCC--------------CCCCCCcccHHHHHHHHHCCCEEEE-EeCCCCCCcchhHHHhhhhccCcCcHHHHH
Confidence 9999998642 211111122 22 699999999998 4331 1123322 34456678889999
Q ss_pred HHHHHHHHhcccccccc
Q 007338 587 FDVEWLIQAELLLEDTL 603 (607)
Q Consensus 587 ~~v~~~~~~~~~~~~~~ 603 (607)
++++||++++++|.++|
T Consensus 544 aav~~L~~~~~~d~~rI 560 (711)
T 4hvt_A 544 AVSEELIKQNITSPEYL 560 (711)
T ss_dssp HHHHHHHHTTSCCGGGE
T ss_pred HHHHHHHHcCCCCcccE
Confidence 99999999999999886
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-17 Score=184.27 Aligned_cols=338 Identities=11% Similarity=0.022 Sum_probs=193.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc-ccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
...+++|||||+.|+. .. ..|+++|+++|+.+++....... .......+.||||++.+++....
T Consensus 18 ~~~~~~w~~dg~~~~~-~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~--- 82 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYK-QE-----------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY--- 82 (740)
T ss_dssp CCCCEEECSSSEEEEE-ET-----------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE---
T ss_pred cccccEECCCCcEEEE-cC-----------CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC---
Confidence 3668999999975544 21 48999999999987775443211 11112248999998866664211
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCC-CCceeeeeeCCCCce
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
. .+++. .....+|++|+ +|+.++|+. ......++|||||++
T Consensus 83 -------------------~-----~~~r~-------------~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~ 125 (740)
T 4a5s_A 83 -------------------V-----KQWRH-------------SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHK 125 (740)
T ss_dssp -------------------E-----ECSSS-------------CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTC
T ss_pred -------------------e-----eeEEE-------------ccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCE
Confidence 0 00110 02368999999 678888875 345678999999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcc-ccccc-----CCCCcceeecCCCceEEEEEe
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC-YNSVR-----EGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~~-----~~~~~~~wspdg~~~l~~~~~ 262 (607)
|+|+.. .+||++++.+++.++|+.......+..+ .++++ ...+.+.|||||+. |+|...
T Consensus 126 la~~~~--------------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~ 190 (740)
T 4a5s_A 126 LAYVWN--------------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQF 190 (740)
T ss_dssp EEEEET--------------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEE
T ss_pred EEEEEC--------------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCE-EEEEEE
Confidence 999953 2799999999988888753211110000 00000 11235899999995 555543
Q ss_pred ecCCCCc--c----------------------ccCCCceEEeccCCCCC---CC--Cceeeee------cCcccceeeEc
Q 007338 263 QDRGDAN--V----------------------EVSPRDIIYTQPAEPAE---GE--KPEILHK------LDLRFRSVSWC 307 (607)
Q Consensus 263 ~~~~~~~--~----------------------~~~~~~~~~~~~~~~~~---g~--~~~~l~~------~~~~~~~~~ws 307 (607)
.+..-.. . ..+....+++++. .+ |. +...+.. ....+..+.||
T Consensus 191 d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT--DSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET--TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred cccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC--CCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 3221100 0 0011125666664 22 21 2233332 33446789999
Q ss_pred CCCcEEEEEEeccccceEEEEEcCCCCCC-----CceEeeeccccccccCCCCCCeeeCCCCCEEE-EEeeeccCcCcEE
Q 007338 308 DDSLALVNETWYKTSQTRTWLVCPGSKDV-----APRVLFDRVFENVYSDPGSPMMTRTSTGTNVI-AKIKKENDEQIYI 381 (607)
Q Consensus 308 ~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~-~~~~~~~~~~~~l 381 (607)
|||+.+++..+.......|+++|+++++. ..+.++.......+.......+.|+|||+.++ +.....+ ..+|
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G--~~~l 346 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG--YRHI 346 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS--CEEE
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC--ceEE
Confidence 99997666555545556899999988420 02223211111001000001288999999887 5544322 2333
Q ss_pred EEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeec-cccc--ceEEEEe
Q 007338 382 LLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES-KTEI--TQYHILS 458 (607)
Q Consensus 382 ~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss-~~~p--~~l~~~~ 458 (607)
+.+++++++.++|+..... +..+ +++|++.++|+.+. ...| ..||+++
T Consensus 347 ----------------~~~~~~~~~~~~lT~g~~~-----v~~~--------~~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 347 ----------------CYFQIDKKDCTFITKGTWE-----VIGI--------EALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp ----------------EEEETTCSSCEESCCSSSC-----EEEE--------EEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ----------------EEEECCCCceEecccCCEE-----EEEE--------EEEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 3578777877777654311 1111 23467888887754 1223 4688888
Q ss_pred cCCCcee-eEec
Q 007338 459 WPLKKSS-QITN 469 (607)
Q Consensus 459 ~~~~~~~-~Lt~ 469 (607)
+.+++.+ +||.
T Consensus 398 ~~g~~~~~~lt~ 409 (740)
T 4a5s_A 398 LIDYTKVTCLSC 409 (740)
T ss_dssp TTEEEEEEESST
T ss_pred CCCCCcceeecc
Confidence 8766554 6663
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-17 Score=188.16 Aligned_cols=368 Identities=13% Similarity=0.025 Sum_probs=216.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||+.++. +|+.++|+... ..+..++|||||++|||.+....+ .+..+||++|+++|+.++|+.+...
T Consensus 33 ~~l~~~~~~----gg~~~~lt~~~--~~v~~~~~SPDG~~la~~s~~~~~----~~~~~i~~~d~~~g~~~~lt~~~~~- 101 (1045)
T 1k32_A 33 DDLWEHDLK----SGSTRKIVSNL--GVINNARFFPDGRKIAIRVMRGSS----LNTADLYFYNGENGEIKRITYFSGK- 101 (1045)
T ss_dssp TEEEEEETT----TCCEEEEECSS--SEEEEEEECTTSSEEEEEEEESTT----CCEEEEEEEETTTTEEEECCCCCEE-
T ss_pred CcEEEEECC----CCcEEEeeeCC--CcccCeEECCCCCEEEEEEeeccC----CCCCeEEEEECCCCCeEEcccCCCc-
Confidence 379999987 89999998533 368999999999999999864210 2457999999999999999865432
Q ss_pred ccccc-------cceEEecCCeEEEEEecCCCC-CCCCCc--cCCCCCeeeecCCcc-----------------------
Q 007338 85 LNAVF-------GSFVWVNNSTLLIFTIPSSRR-DPPKKT--MVPLGPKIQSNEQKN----------------------- 131 (607)
Q Consensus 85 ~~~~~-------~~~~Wspd~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~----------------------- 131 (607)
+ ..+.||||++++|........ ...... .+..+..........
T Consensus 102 ----~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 102 ----STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK 177 (1045)
T ss_dssp ----EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred ----ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence 3 679999998866654321100 000000 000110000000000
Q ss_pred ----cccccccccc-------c----------cCcccccceeee----ccceEEEEeCC-CCeeecCCCCceeeeeeCCC
Q 007338 132 ----IIISRMTDNL-------L----------KDEYDESLFDYY----TTAQLVLGSLD-GTAKDFGTPAVYTAVEPSPD 185 (607)
Q Consensus 132 ----~~~~~~~~~~-------~----------~~~~~~~~~~~~----~~~~l~~~~~~-g~~~~lt~~~~~~~~~~SpD 185 (607)
....+.+... + ....+ ...+. ...+||.+++. +..++++....+....||||
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpD 255 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTD 255 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEES
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCC
Confidence 0000000000 0 00001 11111 23588988884 47777876554456799999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceee-cCCCceEEEEEeec
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQD 264 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws-pdg~~~l~~~~~~~ 264 (607)
|++|++... ..|++++++++.+..+....... .+. +.........++|| |||+. |++..
T Consensus 256 G~~la~~~~--------------~~i~~~d~~~~~l~~l~~~~~~~-~~~-~~~~~~~v~~~~~S~pdG~~-la~~~--- 315 (1045)
T 1k32_A 256 GRRILFSKG--------------GSIYIFNPDTEKIEKIEIGDLES-PED-RIISIPSKFAEDFSPLDGDL-IAFVS--- 315 (1045)
T ss_dssp SSCEEEEET--------------TEEEEECTTTCCEEECCCCCCCB-CCS-EEEECGGGGEEEEEECGGGC-EEEEE---
T ss_pred CCEEEEEeC--------------CEEEEecCCceEeeeeccCcccc-ccc-ccccccccceeeecCCCCCE-EEEEE---
Confidence 999999742 27899999766655443210000 000 00000123469999 99985 44432
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCc-ccceeeEcCCCcEEEEEEeccccceEEE-EEcCCCCCCCceEee
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTW-LVCPGSKDVAPRVLF 342 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~~~ws~Dg~~l~~~~~~~~~~~~l~-~~dl~~~~~~~~~l~ 342 (607)
...+++++. ..+ +...+..... ....+.|+ ||+.|++... ..+|| ++++++ ++.+.+.
T Consensus 316 ----------~~~i~~~~~--~~~-~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~--~~~~~l~ 375 (1045)
T 1k32_A 316 ----------RGQAFIQDV--SGT-YVLKVPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRT--GKAEKFE 375 (1045)
T ss_dssp ----------TTEEEEECT--TSS-BEEECSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTT--CCEEECC
T ss_pred ----------cCEEEEEcC--CCC-ceEEccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCC--CCceEec
Confidence 234555553 222 3344444444 67789999 9988777653 35899 999987 3445554
Q ss_pred ec--cccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccce
Q 007338 343 DR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (607)
Q Consensus 343 ~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (607)
.. .+.. +.|+|||+.|++...+ + .+ ..+|+++|+...+..... .
T Consensus 376 ~~~~~~~~---------~~~SpDG~~la~~~~~----~-~v----------------~~~d~~tg~~~~~~~~~~----~ 421 (1045)
T 1k32_A 376 ENLGNVFA---------MGVDRNGKFAVVANDR----F-EI----------------MTVDLETGKPTVIERSRE----A 421 (1045)
T ss_dssp CCCCSEEE---------EEECTTSSEEEEEETT----S-EE----------------EEEETTTCCEEEEEECSS----S
T ss_pred CCccceee---------eEECCCCCEEEEECCC----C-eE----------------EEEECCCCceEEeccCCC----C
Confidence 21 1222 8899999998876532 1 22 246887888776653321 1
Q ss_pred eeeeeecCCCcccccccCCEEEEEeecc------cccceEEEEecCCCceeeEecC
Q 007338 421 TAVALVFGQGEEDINLNQLKILTSKESK------TEITQYHILSWPLKKSSQITNF 470 (607)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~~v~~~ss~------~~p~~l~~~~~~~~~~~~Lt~~ 470 (607)
.+. ...|||||+++++..... ..+..+++.++.+++.+.|+..
T Consensus 422 ~v~-------~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 422 MIT-------DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp CCC-------CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred Ccc-------ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 111 246899999988876653 4567899999988877777654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-16 Score=175.34 Aligned_cols=328 Identities=14% Similarity=0.152 Sum_probs=191.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc------------------c--ccccc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL------------------N--AVFGS 91 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~------------------~--~~~~~ 91 (607)
.+..++|||||++|||.+..+.. .....||++|+++|+.++++....... . ..+..
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~----~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSD----RNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSC----TTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCceEecCCCEEEEEeccCCC----CcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 57899999999999998863100 224699999999999888764322100 0 11467
Q ss_pred eEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC---C
Q 007338 92 FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG---T 167 (607)
Q Consensus 92 ~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g---~ 167 (607)
+.||||++.|++.. ..+|+++++ ++ +
T Consensus 114 ~~~SpDg~~l~~~~--------------------------------------------------~~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 114 YQWSPDAQRLLFPL--------------------------------------------------GGELYLYDLKQEGKAA 143 (741)
T ss_dssp CEECTTSSEEEEEE--------------------------------------------------TTEEEEEESSSCSTTS
T ss_pred eEECCCCCEEEEEe--------------------------------------------------CCcEEEEECCCCCcce
Confidence 89999988766631 146777888 56 6
Q ss_pred eeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcc-cccc----c
Q 007338 168 AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC-YNSV----R 241 (607)
Q Consensus 168 ~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~----~ 241 (607)
.++++.. .....++|||||++|+|.+. ..|+++|+.+++.++++...... +..+ .+.. .
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~~--------------~~i~~~d~~~g~~~~~~~~~~~~-~~~g~~~~v~~~~~ 208 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIRG--------------RNLWVIDLASGRQMQLTADGSTT-IGNGIAEFVADEEM 208 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEET--------------TEEEEEETTTTEEEECCCCCCSS-EEESCCCHHHHHHS
T ss_pred EEEcccCCcccccccCCCCCCEEEEEeC--------------CcEEEEecCCCCEEEeccCCccc-eeccccceeeeecc
Confidence 6677654 35678999999999999863 26999999999888876522110 0000 0000 0
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCcc---------------------ccCCCceEEeccCCCCC-CCCceeeee---
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANV---------------------EVSPRDIIYTQPAEPAE-GEKPEILHK--- 296 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-g~~~~~l~~--- 296 (607)
.....+.|||||+. |++........... .......+++++. .+ + +...+..
T Consensus 209 ~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~--~~~~-~~~~~~~~~~ 284 (741)
T 2ecf_A 209 DRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP--AEQA-QTQWIDLGKE 284 (741)
T ss_dssp CCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS--STTC-CCEEECCCSC
T ss_pred ccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC--CCCC-ceEEecCCCC
Confidence 01356999999995 55544322110000 0011225666664 23 3 4444431
Q ss_pred cCcccceeeEcCCCcEEEEEEe-ccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeecc
Q 007338 297 LDLRFRSVSWCDDSLALVNETW-YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (607)
Q Consensus 297 ~~~~~~~~~ws~Dg~~l~~~~~-~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~ 375 (607)
....+..+.| |||+.|++... .......|+++|++++ +.+.++.......+.. ...+.|+|||+ +++....++
T Consensus 285 ~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~--~~~~~~spdg~-~~~~~~~~g 358 (741)
T 2ecf_A 285 QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWVPL--HNSLRFLDDGS-ILWSSERTG 358 (741)
T ss_dssp SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCCCC--CSCCEECTTSC-EEEEECTTS
T ss_pred cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcCCc--CCceEECCCCe-EEEEecCCC
Confidence 2345678999 99998776543 2234568999999884 4455543211100000 01288999999 555543322
Q ss_pred CcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeeccccc--ce
Q 007338 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI--TQ 453 (607)
Q Consensus 376 ~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p--~~ 453 (607)
...+| .++++++ .+.|+... ..+..+ ..|++|++.+++..+. ..+ ..
T Consensus 359 --~~~l~----------------~~~~~~~-~~~l~~~~-----~~v~~~------~~~s~dg~~l~~~~~~-~~~~~~~ 407 (741)
T 2ecf_A 359 --FQHLY----------------RIDSKGK-AAALTHGN-----WSVDEL------LAVDEKAGLAYFRAGI-ESARESQ 407 (741)
T ss_dssp --SCEEE----------------EECSSSC-EEESCCSS-----SCEEEE------EEEETTTTEEEEEECS-SCTTCBE
T ss_pred --ccEEE----------------EEcCCCC-eeeeeecc-----eEEEeE------eEEeCCCCEEEEEEeC-CCCceEE
Confidence 23343 4555434 44443221 111111 1478999988877654 333 34
Q ss_pred EEEEecCCCceeeEec
Q 007338 454 YHILSWPLKKSSQITN 469 (607)
Q Consensus 454 l~~~~~~~~~~~~Lt~ 469 (607)
||.++..++..++|+.
T Consensus 408 l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 408 IYAVPLQGGQPQRLSK 423 (741)
T ss_dssp EEEEETTCCCCEECCC
T ss_pred EEEEEcCCCCeeeccc
Confidence 6777765555677765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=166.69 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=169.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..|++.++. ++..+.++... ..+..++|||||++|||.+.. .+...|+++|+++|+.++++....
T Consensus 159 ~~i~i~d~~----g~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~-------~~~~~i~~~d~~tg~~~~l~~~~~-- 223 (415)
T 2hqs_A 159 YELRVSDYD----GYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR-- 223 (415)
T ss_dssp EEEEEEETT----SCSCEEEEEES--SCEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSS--
T ss_pred ceEEEEcCC----CCCCEEEeCCC--CcceeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCcEEEeecCCC--
Confidence 578888875 67778887533 358999999999999998853 345799999999999888865443
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
.+..+.|+||++.|+++... + ...+||++++
T Consensus 224 ---~~~~~~~spdg~~la~~~~~---------------------------------------~-------g~~~i~~~d~ 254 (415)
T 2hqs_A 224 ---HNGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDL 254 (415)
T ss_dssp ---CEEEEEECTTSSEEEEEECT---------------------------------------T-------SSCEEEEEET
T ss_pred ---cccCEEEcCCCCEEEEEEec---------------------------------------C-------CCceEEEEEC
Confidence 25689999998866654210 0 1247888998
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+++.++++... ....++|||||++|++.+.... ...||++|+.+++.+.++.. ..
T Consensus 255 ~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g----------~~~i~~~d~~~~~~~~l~~~-------------~~ 311 (415)
T 2hqs_A 255 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWE-------------GS 311 (415)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCS-------------SS
T ss_pred CCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC----------CcEEEEEECCCCCEEEEecC-------------CC
Confidence 66777776543 5568999999999999975321 13799999999887766431 01
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
....+.|||||+. |++....+ + ...+++++. ..+ +...+.... ....+.|+|||+.|++.... .+
T Consensus 312 ~~~~~~~spdG~~-l~~~~~~~-g--------~~~i~~~d~--~~~-~~~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~ 376 (415)
T 2hqs_A 312 QNQDADVSSDGKF-MVMVSSNG-G--------QQHIAKQDL--ATG-GVQVLSSTF-LDETPSLAPNGTMVIYSSSQ-GM 376 (415)
T ss_dssp EEEEEEECTTSSE-EEEEEECS-S--------CEEEEEEET--TTC-CEEECCCSS-SCEEEEECTTSSEEEEEEEE-TT
T ss_pred cccCeEECCCCCE-EEEEECcC-C--------ceEEEEEEC--CCC-CEEEecCCC-CcCCeEEcCCCCEEEEEEcC-CC
Confidence 1235899999984 44443211 1 235666664 333 445554433 56789999999987776532 23
Q ss_pred ceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCC
Q 007338 323 QTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTG 364 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg 364 (607)
...||++|+++ +..+.|.. ..+.+ +.|+|.-
T Consensus 377 ~~~l~~~d~~g--~~~~~l~~~~~~v~~---------~~~~~~~ 409 (415)
T 2hqs_A 377 GSVLNLVSTDG--RFKARLPATDGQVKF---------PAWSPYL 409 (415)
T ss_dssp EEEEEEEETTS--CCEEECCCSSSEEEE---------EEECCCC
T ss_pred ccEEEEEECCC--CcEEEeeCCCCCCcC---------Ccccccc
Confidence 45899999987 34555543 33444 7888753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=165.70 Aligned_cols=339 Identities=10% Similarity=0.051 Sum_probs=185.4
Q ss_pred CCCeeeeecCCCC---CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEE
Q 007338 18 LGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW 94 (607)
Q Consensus 18 ~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W 94 (607)
+...++|+..... ..+..++|||||++|||.... ++..+||++|+++++.++++..... ....+.|
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~l~~~~~~----~~~~~~~ 88 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQLTEGKGD----NTFGGFI 88 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEECCCSSCB----CTTTCEE
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEEeecCCCC----ccccceE
Confidence 3446667632211 127889999999999999864 4567899999999999998754331 1234899
Q ss_pred ecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCC
Q 007338 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT 173 (607)
Q Consensus 95 spd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~ 173 (607)
|||++.|++... ..+||++++ +++.++++.
T Consensus 89 spdg~~l~~~~~-------------------------------------------------~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 89 STDERAFFYVKN-------------------------------------------------ELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp CTTSSEEEEEET-------------------------------------------------TTEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEEc-------------------------------------------------CCcEEEEECCCCCcEEEEe
Confidence 999887766421 014555555 344444432
Q ss_pred -CCc-e-------------------eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCC
Q 007338 174 -PAV-Y-------------------TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (607)
Q Consensus 174 -~~~-~-------------------~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (607)
+.. . ....|||||+++++...... .....|+++|+++++.+.+...
T Consensus 120 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~--------~~~~~l~~~d~~~g~~~~~~~~----- 186 (396)
T 3c5m_A 120 VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT--------NPTCRLIKVDIETGELEVIHQD----- 186 (396)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT--------CCCEEEEEEETTTCCEEEEEEE-----
T ss_pred cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC--------CCcceEEEEECCCCcEEeeccC-----
Confidence 111 0 01456677666655431000 0124799999999888776531
Q ss_pred CCcccccccCCCCcceeec-CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec--CcccceeeEcCC
Q 007338 233 IPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDD 309 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~wsp-dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~--~~~~~~~~ws~D 309 (607)
......+.||| ||+ .|+++.. +..+ .....+++++. .+.+.+.+... ......+.||||
T Consensus 187 --------~~~~~~~~~sp~dg~-~l~~~~~-~~~~-----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 187 --------TAWLGHPIYRPFDDS-TVGFCHE-GPHD-----LVDARMWLVNE---DGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp --------SSCEEEEEEETTEEE-EEEEEEC-SCSS-----SCSCCCEEEET---TSCCCEESSCCCTTEEEEEEEECTT
T ss_pred --------CcccccceECCCCCC-EEEEEec-CCCC-----CCCceEEEEEC---CCCceeEeeccCCCccccceEECCC
Confidence 11123589999 676 4555542 1110 11134566553 23244555442 224567899999
Q ss_pred CcEEEEEEeccc-cceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCC-CCCEEEEEeeeccCcCcEEEEeec-
Q 007338 310 SLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGR- 386 (607)
Q Consensus 310 g~~l~~~~~~~~-~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~l~~~~~- 386 (607)
|+.|++...... ....|+++|+++ ++.+.+....... +.|+| ||+.+++.... .+ +...+
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~~~~~---------~~~s~~dg~~l~~~~~~--~p----~~~~~~ 311 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPET--LENEEVMVMPPCS---------HLMSNFDGSLMVGDGCD--AP----VDVADA 311 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTT--CCEEEEEECCSEE---------EEEECSSSSEEEEEECC--C-----------
T ss_pred CCEEEEEecCCCCccceEEEEECCC--CCeEEeeeCCCCC---------CCccCCCCceEEEecCC--cc----eeeccc
Confidence 987766543221 223599999987 3445554221111 67899 99976654311 00 00000
Q ss_pred CCCCCCCcceeEeeecCCCCeeEEeecCCcccceee-eeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCcee
Q 007338 387 GFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA-VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (607)
Q Consensus 387 g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~ 465 (607)
+.........++.+|+++++.++|...... .... ...........|++|++.|++..... ..+++|++++.+++.+
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTS--WDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESYKH 388 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCC--CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTCC-
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCc--cccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEcccccc
Confidence 000001122355678877776666433210 0000 00000001246899999888876654 4567999998776655
Q ss_pred eE
Q 007338 466 QI 467 (607)
Q Consensus 466 ~L 467 (607)
.+
T Consensus 389 ~~ 390 (396)
T 3c5m_A 389 LE 390 (396)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-16 Score=173.79 Aligned_cols=341 Identities=10% Similarity=0.030 Sum_probs=188.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
....++|||||+.+ +.. . + ..|+++|+++|+.+++....... ...+..+.||||++.|++......
T Consensus 18 ~~~~~~~spdg~~~-~~~-~-------d--g~i~~~d~~~g~~~~~~~~~~~~-~~~v~~~~~SpDg~~l~~~~~~~~-- 83 (723)
T 1xfd_A 18 HDPEAKWISDTEFI-YRE-Q-------K--GTVRLWNVETNTSTVLIEGKKIE-SLRAIRYEISPDREYALFSYNVEP-- 83 (723)
T ss_dssp CCCCCCBSSSSCBC-CCC-S-------S--SCEEEBCGGGCCCEEEECTTTTT-TTTCSEEEECTTSSEEEEEESCCC--
T ss_pred cccccEEcCCCcEE-EEe-C-------C--CCEEEEECCCCcEEEEecccccc-ccccceEEECCCCCEEEEEecCcc--
Confidence 46789999999954 432 1 2 38999999999887776433210 001568999999887766532110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC----ceeeeeeCCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA----VYTAVEPSPDQ 186 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~----~~~~~~~SpDg 186 (607)
. ... .....|+++++ +|+.++|+... .+..++|||||
T Consensus 84 -------------------~------~~~-------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG 125 (723)
T 1xfd_A 84 -------------------I------YQH-------------SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG 125 (723)
T ss_dssp -------------------C------SSS-------------CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred -------------------c------eee-------------cceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence 0 000 01368899999 66777776432 25679999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccc-ccc-----cCCCCcceeecCCCceEEEE
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY-NSV-----REGMRSISWRADKPSTLYWV 260 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~~~-----~~~~~~~~wspdg~~~l~~~ 260 (607)
++|+|.+. .+|+++++.+++.++++.......+..+. +.. ......++|||||+. |++.
T Consensus 126 ~~la~~~~--------------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~-la~~ 190 (723)
T 1xfd_A 126 QQLIFIFE--------------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR-LAYA 190 (723)
T ss_dssp TCEEEEET--------------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE-EEEE
T ss_pred CEEEEEEC--------------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE-EEEE
Confidence 99999974 27999999999888876521110000000 000 001235999999995 5554
Q ss_pred EeecCCCCcc----------------------ccCCCceEEeccCCCCCCCCceeeeec------CcccceeeEcCCCcE
Q 007338 261 EAQDRGDANV----------------------EVSPRDIIYTQPAEPAEGEKPEILHKL------DLRFRSVSWCDDSLA 312 (607)
Q Consensus 261 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~g~~~~~l~~~------~~~~~~~~ws~Dg~~ 312 (607)
...+..-... .......+++++. ..+.....+... ...+..+.|||||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~--~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL--NGPTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES--SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC--CCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 4332110000 0011235777774 333122444322 334567999999997
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEE-eeeccCcCcEEEEeecCCCCC
Q 007338 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK-IKKENDEQIYILLNGRGFTPE 391 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~-~~~~~~~~~~l~~~~~g~~~~ 391 (607)
+++..........|+++|++++ +.+.++......... .....+.|+|||+.|++. ....+...
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~------------- 332 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEAWLH-RQNEEPVFSKDGRKFFFIRAIPQGGRG------------- 332 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSSCCC-CCCCCCEECTTSCSEEEEEEECCSSSS-------------
T ss_pred EEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCCEEe-ccCCCceEcCCCCeEEEEEecccCCCc-------------
Confidence 7655443334568999999884 444443211101000 000128899999988876 33221000
Q ss_pred CCcceeEeee-cCCCC---eeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeeccc-ccceEEEEecCCC-cee
Q 007338 392 GNIPFLDLFD-INTGS---KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWPLK-KSS 465 (607)
Q Consensus 392 ~~~~~l~~~d-~~~g~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~-~p~~l~~~~~~~~-~~~ 465 (607)
....|+.++ ..+++ .+.|+... . .+... ..|++|++.|++...... .-..||.+++.++ +.+
T Consensus 333 -~~~~l~~~d~~~~~~~~~~~~l~~~~----~-~~~~~------~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 400 (723)
T 1xfd_A 333 -KFYHITVSSSQPNSSNDNIQSITSGD----W-DVTKI------LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (723)
T ss_dssp -CEEEEEEECSSCCSSSCCCCBSCCSS----S-CEEEE------EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred -ceeEEEEEeccCCCCccceeEeecCC----e-EEEee------eEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcc
Confidence 011233456 44555 44453221 1 11111 258999999887765421 2345777776554 445
Q ss_pred eEec
Q 007338 466 QITN 469 (607)
Q Consensus 466 ~Lt~ 469 (607)
.|+.
T Consensus 401 ~l~~ 404 (723)
T 1xfd_A 401 CLSC 404 (723)
T ss_dssp CSST
T ss_pred eecc
Confidence 5553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-15 Score=154.14 Aligned_cols=307 Identities=9% Similarity=0.017 Sum_probs=183.8
Q ss_pred ceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc
Q 007338 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (607)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 140 (607)
..++|+....+++.++||..........+..+.||||++.|++....
T Consensus 10 ~~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--------------------------------- 56 (388)
T 3pe7_A 10 TFDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF--------------------------------- 56 (388)
T ss_dssp CCEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---------------------------------
T ss_pred cceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC---------------------------------
Confidence 36788755555677889865432111122358999998866664210
Q ss_pred cccCcccccceeeeccceEEEEeC-CCCeeecCCCCc--eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV--YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~~--~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
+ ...+||++++ +|+.++++.... ...+.|||||++|+|.... ..|+++|+.
T Consensus 57 ------~-------g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-------------~~l~~~d~~ 110 (388)
T 3pe7_A 57 ------D-------GPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-------------RNLMRVDLA 110 (388)
T ss_dssp ------T-------SSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-------------TEEEEEETT
T ss_pred ------C-------CCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-------------CeEEEEECC
Confidence 0 1358999999 678888876432 2367899999999999742 379999999
Q ss_pred CCeeEEeccCCCCCCCCcccccccCCCCc--ceeecCCCceEEEEEeecCCCCc-----------cccCCCceEEeccCC
Q 007338 218 GKLVRELCDLPPAEDIPVCYNSVREGMRS--ISWRADKPSTLYWVEAQDRGDAN-----------VEVSPRDIIYTQPAE 284 (607)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~wspdg~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 284 (607)
+++.+.+...+... ... ...+|||+..+ .+... ..+.. ........+++++.
T Consensus 111 ~g~~~~~~~~~~~~------------~~~~~~~~~~dg~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 175 (388)
T 3pe7_A 111 TLEENVVYQVPAEW------------VGYGTWVANSDCTKLV-GIEIR-REDWVPLTDWKKFHEFYFTKPCCRLMRVDL- 175 (388)
T ss_dssp TCCEEEEEECCTTE------------EEEEEEEECTTSSEEE-EEEEE-GGGCCCCCSHHHHHHHGGGCCCEEEEEEET-
T ss_pred CCcceeeeechhhc------------ccccceeECCCCCeec-ccccc-CcccccccccchhhhhhccCCcceEEEEEC-
Confidence 99888776532110 011 23478888433 22211 11100 01123356777774
Q ss_pred CCCCCCceeeeecCcccceeeEcC-CCcEEEEEEecc--ccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeC
Q 007338 285 PAEGEKPEILHKLDLRFRSVSWCD-DSLALVNETWYK--TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRT 361 (607)
Q Consensus 285 ~~~g~~~~~l~~~~~~~~~~~ws~-Dg~~l~~~~~~~--~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 361 (607)
.+| +.+.+.........+.||| ||+.|++..... ....+||++|+++ +..+.++......... .+.|+
T Consensus 176 -~~g-~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~-----~~~~s 246 (388)
T 3pe7_A 176 -KTG-ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCT-----HEFWV 246 (388)
T ss_dssp -TTC-CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEE-----EEEEC
T ss_pred -CCC-ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC--CceEEeeeCCCCcccc-----cceEC
Confidence 444 6667766666678899999 999887765321 1245899999987 4556665322100011 17899
Q ss_pred CCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEE
Q 007338 362 STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKI 441 (607)
Q Consensus 362 ~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 441 (607)
|||+.|++.....+.... .|+.+|+++|+.+.+..... ...... ......|+|||+.+
T Consensus 247 pdg~~l~~~~~~~~~~~~----------------~l~~~d~~~g~~~~l~~~~~---~~~~~~---~~~~~~~spdg~~l 304 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDR----------------FIYSADPETLENRQLTSMPA---CSHLMS---NYDGSLMVGDGSDA 304 (388)
T ss_dssp TTSSCEEEEEEETTCCCE----------------EEEEECTTTCCEEEEEEECC---EEEEEE---CTTSSEEEEEECCC
T ss_pred CCCCEEEEEecCCCCCcc----------------eEEEEecCCCceEEEEcCCC---ceeeee---cCCCCeEccCCCcc
Confidence 999988877654321111 13357888888777654321 001100 00113589999988
Q ss_pred EEEeec-----ccccceEEEEecCCCceeeEecCCC
Q 007338 442 LTSKES-----KTEITQYHILSWPLKKSSQITNFPH 472 (607)
Q Consensus 442 v~~~ss-----~~~p~~l~~~~~~~~~~~~Lt~~~~ 472 (607)
+++... .....+||++++.+++.++|+....
T Consensus 305 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 305 PVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp ------------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred eeEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 876543 2456789999999999999987643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=154.06 Aligned_cols=169 Identities=21% Similarity=0.289 Sum_probs=102.0
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
...||+.++. +++.++| ..+..|+|||||++|||.+.... .+..+||++++++|+.++++....
T Consensus 42 ~~~l~~~d~~----~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~-----~~~~~l~~~~~~~g~~~~l~~~~~- 105 (347)
T 2gop_A 42 ENTIVIENLK----NNARRFI------ENATMPRISPDGKKIAFMRANEE-----KKVSEIWVADLETLSSKKILEAKN- 105 (347)
T ss_dssp EEEEEEEETT----TCCEEEE------ESCEEEEECTTSSEEEEEEEETT-----TTEEEEEEEETTTTEEEEEEEESE-
T ss_pred cceEEEEeCC----CCceEEc------ccCCCeEECCCCCEEEEEEeccC-----CCcceEEEEECCCCceEEEEcCCC-
Confidence 5679999987 7787777 25789999999999999986420 256789999999999988875432
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
+..+.|+||++.|++........ . ..+.+.. +.+..+...+......+||+++
T Consensus 106 -----~~~~~wspdg~~l~~~~~~~~~~------------------~---~~~~~~~-~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 106 -----IRSLEWNEDSRKLLIVGFKRRED------------------E---DFIFEDD-VPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp -----EEEEEECTTSSEEEEEEECCCC-------------------------------CCCC---------CEEEEEEEE
T ss_pred -----ccceeECCCCCEEEEEEccCCCc------------------C---CcEEEcc-cceeecCcccccCccceEEEEE
Confidence 56899999987666553211000 0 0000110 1111111111111246899999
Q ss_pred C-CCCe-eecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcC-CccEEEEeCCCCeeEEe
Q 007338 164 L-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARF-SQKVQVWTTDGKLVREL 224 (607)
Q Consensus 164 ~-~g~~-~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~~~~l 224 (607)
+ +|+. ++|+.+ .+..+.||||| |+|+........ ... ...||+++ +++.+.|
T Consensus 159 ~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~----~~~~~~~l~~~d--~~~~~~l 213 (347)
T 2gop_A 159 TESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIP----QYFKFWDIYIWE--DGKEEKM 213 (347)
T ss_dssp TTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSC----CSSCCEEEEEEE--TTEEEEE
T ss_pred CCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccc----cccccccEEEeC--CCceEEe
Confidence 9 6666 777653 55688999999 776654321100 001 23688888 5555444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-15 Score=144.69 Aligned_cols=261 Identities=12% Similarity=0.042 Sum_probs=169.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC-CceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~ 83 (607)
..|++.++. +++.+++.... ..+..+.|||||++|++... ..|+++|+++ ++..+++.....
T Consensus 22 ~~i~~~d~~----~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~-----------~~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 22 SSIEIFNIR----TRKMRVVWQTP--ELFEAPNWSPDGKYLLLNSE-----------GLLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp EEEEEEETT----TTEEEEEEEES--SCCEEEEECTTSSEEEEEET-----------TEEEEEESSSCCSCEECCCTTCC
T ss_pred eeEEEEeCC----CCceeeeccCC--cceEeeEECCCCCEEEEEcC-----------CeEEEEeCCCCCCceEecccccc
Confidence 568899986 77777776532 36899999999999998642 4899999999 888877643311
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
..+..+.|+||++.+++..... + ...+||.++
T Consensus 85 ---~~~~~~~~spdg~~l~~~~~~~--------------------------------------~-------~~~~l~~~~ 116 (297)
T 2ojh_A 85 ---ICNNDHGISPDGALYAISDKVE--------------------------------------F-------GKSAIYLLP 116 (297)
T ss_dssp ---CBCSCCEECTTSSEEEEEECTT--------------------------------------T-------SSCEEEEEE
T ss_pred ---ccccceEECCCCCEEEEEEeCC--------------------------------------C-------CcceEEEEE
Confidence 1256899999988777652100 0 135788888
Q ss_pred C-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 164 L-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 164 ~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+ +++.+.+........+.|||||++|+++..... ...||.+++.+++.+.+... ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~-------------~~ 173 (297)
T 2ojh_A 117 STGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHG-------------EG 173 (297)
T ss_dssp TTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCS-------------SS
T ss_pred CCCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccC-------------CC
Confidence 8 557777765555667899999999998765321 12688888888877766431 11
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc-
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT- 321 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~- 321 (607)
....+.|+|||+. +++....+ ....++.++. .+.....+.........+.|+|||+.|++......
T Consensus 174 ~~~~~~~s~dg~~-l~~~~~~~---------~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 174 RNDGPDYSPDGRW-IYFNSSRT---------GQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp CEEEEEECTTSSE-EEEEECTT---------SSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred ccccceECCCCCE-EEEEecCC---------CCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCC
Confidence 2245899999984 33332111 1234454442 22244455444556677999999998776543211
Q ss_pred ------cceEEEEEcCCCCCCCceEeeec-cccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 322 ------SQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 322 ------~~~~l~~~dl~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
....|+++|+.++ +.+.+... ...... ..+.|+|||+.|++...+
T Consensus 241 ~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~-----~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGG--NVETLFDLFGGQGTM-----NSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CSCCSSEEEEEEEEETTSC--SCEEEEEEEESTTTS-----CSCCBCTTSSEEEEEEEC
T ss_pred CcccccCceEEEEEecCCC--CceeeeccCCCCccc-----ccceECCCCCEEEEEEec
Confidence 2357999999883 44555321 001111 128899999998887654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-14 Score=148.47 Aligned_cols=251 Identities=15% Similarity=0.145 Sum_probs=165.7
Q ss_pred CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCC
Q 007338 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (607)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~ 120 (607)
.+++|+|.+..... .....|+++|++++..+.++..... +..+.||||++.+++....
T Consensus 142 ~~~~l~~~s~~~~~----~~~~~i~i~d~~g~~~~~l~~~~~~-----v~~~~~Spdg~~la~~s~~------------- 199 (415)
T 2hqs_A 142 FRTRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFE------------- 199 (415)
T ss_dssp TTCEEEEEEECSSS----SCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECT-------------
T ss_pred CCCEEEEEEecCCC----CccceEEEEcCCCCCCEEEeCCCCc-----ceeeEEcCCCCEEEEEEec-------------
Confidence 48899998864100 1127999999998888888754432 6789999998876664210
Q ss_pred CCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCC
Q 007338 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (607)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~ 198 (607)
+ ....|+++++ +|+.+.+... .....++|||||++|+|+.....
T Consensus 200 ---------~------------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g- 245 (415)
T 2hqs_A 200 ---------S------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG- 245 (415)
T ss_dssp ---------T------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS-
T ss_pred ---------C------------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC-
Confidence 0 1247888888 6777766543 35678999999999998864321
Q ss_pred ccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceE
Q 007338 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (607)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (607)
...|++||+.+++.+.+..
T Consensus 246 ---------~~~i~~~d~~~~~~~~l~~---------------------------------------------------- 264 (415)
T 2hqs_A 246 ---------SLNLYVMDLASGQIRQVTD---------------------------------------------------- 264 (415)
T ss_dssp ---------SCEEEEEETTTCCEEECCC----------------------------------------------------
T ss_pred ---------CceEEEEECCCCCEEeCcC----------------------------------------------------
Confidence 2369999998876554421
Q ss_pred EeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec--cccccccCCCCC
Q 007338 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSP 356 (607)
Q Consensus 279 ~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~ 356 (607)
.......+.|||||+.|++.... .+..+||++|+.++ +.+.+... .+..
T Consensus 265 ------------------~~~~~~~~~~spdg~~l~~~s~~-~g~~~i~~~d~~~~--~~~~l~~~~~~~~~-------- 315 (415)
T 2hqs_A 265 ------------------GRSNNTEPTWFPDSQNLAFTSDQ-AGRPQVYKVNINGG--APQRITWEGSQNQD-------- 315 (415)
T ss_dssp ------------------CSSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETTSS--CCEECCCSSSEEEE--------
T ss_pred ------------------CCCcccceEECCCCCEEEEEECC-CCCcEEEEEECCCC--CEEEEecCCCcccC--------
Confidence 11123457899999987776532 23458999999883 44554321 1222
Q ss_pred CeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccc
Q 007338 357 MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINL 436 (607)
Q Consensus 357 ~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 436 (607)
+.|+|||+.|++.....+ ... +..+|+++++.+.+.... .+. ...|+|
T Consensus 316 -~~~spdG~~l~~~~~~~g--~~~----------------i~~~d~~~~~~~~l~~~~------~~~-------~~~~sp 363 (415)
T 2hqs_A 316 -ADVSSDGKFMVMVSSNGG--QQH----------------IAKQDLATGGVQVLSSTF------LDE-------TPSLAP 363 (415)
T ss_dssp -EEECTTSSEEEEEEECSS--CEE----------------EEEEETTTCCEEECCCSS------SCE-------EEEECT
T ss_pred -eEECCCCCEEEEEECcCC--ceE----------------EEEEECCCCCEEEecCCC------CcC-------CeEEcC
Confidence 789999999888765321 122 335687777765553211 111 146899
Q ss_pred cCCEEEEEeecccccceEEEEecCCCceeeEecC
Q 007338 437 NQLKILTSKESKTEITQYHILSWPLKKSSQITNF 470 (607)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~ 470 (607)
|+..+++.... .....||++++.++..++|+..
T Consensus 364 dg~~l~~~s~~-~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 364 NGTMVIYSSSQ-GMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp TSSEEEEEEEE-TTEEEEEEEETTSCCEEECCCS
T ss_pred CCCEEEEEEcC-CCccEEEEEECCCCcEEEeeCC
Confidence 99988776654 3345799999887777777755
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-14 Score=158.89 Aligned_cols=295 Identities=14% Similarity=0.162 Sum_probs=173.2
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC-----Cceeeccc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-----GEAKPLFE 79 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-----g~~~~lt~ 79 (607)
..|++.++. +++.++++.. ...+..++|||||++|||+.. .+||++|+++ |+.++++.
T Consensus 101 ~~i~~~d~~----~~~~~~l~~~--~~~~~~~~~SpdG~~la~~~~-----------~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 101 GGLVGFDML----ARKVTYLFDT--NEETASLDFSPVGDRVAYVRN-----------HNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp TEEEEEETT----TTEEEEEECC--TTCCTTCEECTTSSEEEEEET-----------TEEEEEECBCTTSCCCCCEESCS
T ss_pred CEEEEEECC----CCceEEccCC--cccccCCcCCCCCCEEEEEEC-----------CeEEEEecCcccccCCCcEEecc
Confidence 368888986 7778888743 235889999999999999642 5899999999 99888875
Q ss_pred CCCccc-cc---------cccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCccccc
Q 007338 80 SPDICL-NA---------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (607)
Q Consensus 80 ~~~~~~-~~---------~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (607)
.....+ +. .+..+.||||++.|++...++.... . ........... . .. ...++....
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~------~~~~~~~~~~~----~-~~-~~~y~~~g~ 230 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-P------TPIVDYHPLEA----E-SK-PLYYPMAGT 230 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-C------EEEEECCSSSC----E-EE-EECCCBTTS
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-e------EEeeccCCCCC----c-eE-EeeCCCCCC
Confidence 543210 00 0257899999887666532211110 0 00000000000 0 00 011111110
Q ss_pred ceeeeccceEEEEeC-CCCeeecCCC----CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEE
Q 007338 150 LFDYYTTAQLVLGSL-DGTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRE 223 (607)
Q Consensus 150 ~~~~~~~~~l~~~~~-~g~~~~lt~~----~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~ 223 (607)
. ....+|+++++ +++.+.+... ..+..++|||||++|++....+... ...|+++|+.++ ..+.
T Consensus 231 ~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--------~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 231 P---SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN--------ECKVNAYDAETGRFVRT 299 (706)
T ss_dssp C---CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC--------EEEEEEEETTTCCEEEE
T ss_pred C---CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC--------eeEEEEEECCCCceeeE
Confidence 0 12468999999 5666666532 2456899999999999986543211 237999999988 6666
Q ss_pred eccCCCCCCCCcccccccCCCCcceeec--CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCccc
Q 007338 224 LCDLPPAEDIPVCYNSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF 301 (607)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~wsp--dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~ 301 (607)
+........ ......+.||| ||+ +++....+ ....++.++. ++...+.++......
T Consensus 300 ~~~~~~~~~--------~~~~~~~~~sp~~dg~--~l~~~~~~---------g~~~l~~~~~---~~~~~~~l~~~~~~v 357 (706)
T 2z3z_A 300 LFVETDKHY--------VEPLHPLTFLPGSNNQ--FIWQSRRD---------GWNHLYLYDT---TGRLIRQVTKGEWEV 357 (706)
T ss_dssp EEEEECSSC--------CCCCSCCEECTTCSSE--EEEEECTT---------SSCEEEEEET---TSCEEEECCCSSSCE
T ss_pred EEEccCCCe--------ECccCCceeecCCCCE--EEEEEccC---------CccEEEEEEC---CCCEEEecCCCCeEE
Confidence 542100000 00123589999 997 33332211 1234555542 332344555444444
Q ss_pred ce-eeEcCCCcEEEEEEeccc-cceEEEEEcCCCCCCCceEeee-ccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 302 RS-VSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 302 ~~-~~ws~Dg~~l~~~~~~~~-~~~~l~~~dl~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.. +.|+|||+.|++....+. ...+||.+|+++ +..+.+.. ..+.. +.|+|||+.+++....
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~---------~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG--GKTKDLTPESGMHR---------TQLSPDGSAIIDIFQS 421 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC--CCCEESCCSSSEEE---------EEECTTSSEEEEEEEC
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC--CCceeccCCCceEE---------EEECCCCCEEEEEecC
Confidence 44 799999998776653322 246899999988 34565542 12222 7899999988877543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-15 Score=166.31 Aligned_cols=332 Identities=10% Similarity=-0.001 Sum_probs=181.4
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
..+++||||| .+++... ...|+++|+++|+.++++...... ...+..+.|||||+.|++.....
T Consensus 18 ~~~~~~s~dg-~~~~~~~----------d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~---- 81 (719)
T 1z68_A 18 TFFPNWISGQ-EYLHQSA----------DNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYS---- 81 (719)
T ss_dssp CCCCEESSSS-EEEEECT----------TSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEE----
T ss_pred CCccEECCCC-eEEEEcC----------CCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCc----
Confidence 4589999999 4555431 248999999999998887432110 00146899999988776642100
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe---eecCCCCceeeeeeCCCCce
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~lt~~~~~~~~~~SpDg~~ 188 (607)
+ .++. .....|+++++ +|+. ++|+ .....++|||||++
T Consensus 82 -----------------~------~~~~-------------s~~~~i~~~d~~~g~~~~~~~l~--~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 82 -----------------K------LWRY-------------SYTATYYIYDLSNGEFVRGNELP--RPIQYLCWSPVGSK 123 (719)
T ss_dssp -----------------E------CSSS-------------CEEEEEEEEETTTTEECCSSCCC--SSBCCEEECSSTTC
T ss_pred -----------------e------eEEe-------------ecceEEEEEECCCCccccceecC--cccccceECCCCCE
Confidence 0 0100 01357999999 5666 5664 23567999999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcc-ccccc-----CCCCcceeecCCCceEEEEEe
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC-YNSVR-----EGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~~-----~~~~~~~wspdg~~~l~~~~~ 262 (607)
|+|+.. .+|+++++.+++.++++.......+..+ .+..+ .....++|||||+. |++...
T Consensus 124 la~~~~--------------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~ 188 (719)
T 1z68_A 124 LAYVYQ--------------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEF 188 (719)
T ss_dssp EEEEET--------------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEE
T ss_pred EEEEEC--------------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEE
Confidence 999852 2799999999888877642111100000 00000 11146999999995 555543
Q ss_pred ecCCCCcc----------------------ccCCCceEEeccCCCCCCCCce---ee------eecCcccceeeEcCCCc
Q 007338 263 QDRGDANV----------------------EVSPRDIIYTQPAEPAEGEKPE---IL------HKLDLRFRSVSWCDDSL 311 (607)
Q Consensus 263 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~g~~~~---~l------~~~~~~~~~~~ws~Dg~ 311 (607)
.+..-... .......+++++. ..+ +.. .+ ......+..++||||++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT--TYP-AYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES--SCH-HHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC--CCC-CccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 32210000 0011225666664 222 211 11 11233457899999986
Q ss_pred EEEEEEeccccceEEEEEc----CCCCCCCceEeee---ccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEe
Q 007338 312 ALVNETWYKTSQTRTWLVC----PGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (607)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d----l~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~ 384 (607)
.++..........+||++| +.+ ++.+.++. ......+.......+.|+|||+.+++...... ....
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-g~~~---- 338 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQT--WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD-GYKH---- 338 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSS--EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT-SCEE----
T ss_pred EEEEEeccccCeEEEEEEcccCCCCC--CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC-CceE----
Confidence 5444333334456899999 776 33333331 11111011000002789999998777543211 1222
Q ss_pred ecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeec---ccccceEEEEecCC
Q 007338 385 GRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES---KTEITQYHILSWPL 461 (607)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss---~~~p~~l~~~~~~~ 461 (607)
|+.+++++++.+.|+.... .+..+ .++ +++.++|+... ...-..||.+++.+
T Consensus 339 ------------l~~~~~~~~~~~~lt~~~~-----~v~~~-------~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 339 ------------IHYIKDTVENAIQITSGKW-----EAINI-------FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp ------------EEEESSCSTTCEECSCSSS-----CEEEE-------EEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred ------------EEEEECCCCceEecccCce-----EEEEE-------EEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 3356776676665643221 11111 234 77888887754 12334688888755
Q ss_pred C--ceeeEe
Q 007338 462 K--KSSQIT 468 (607)
Q Consensus 462 ~--~~~~Lt 468 (607)
+ +.+.|+
T Consensus 394 g~~~~~~l~ 402 (719)
T 1z68_A 394 YPPSKKCVT 402 (719)
T ss_dssp SSCCEEESS
T ss_pred CCCCceecc
Confidence 5 345565
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-14 Score=146.85 Aligned_cols=284 Identities=14% Similarity=0.086 Sum_probs=165.0
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.++. +++.++++... ......+.|||||++|+|.... .+||++|+++++.++++....
T Consensus 60 ~~l~~~d~~----~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~----------~~l~~~d~~~~~~~~~~~~~~-- 122 (396)
T 3c5m_A 60 RNYYLLNLE----TQQAVQLTEGK-GDNTFGGFISTDERAFFYVKNE----------LNLMKVDLETLEEQVIYTVDE-- 122 (396)
T ss_dssp CEEEEEETT----TTEEEECCCSS-CBCTTTCEECTTSSEEEEEETT----------TEEEEEETTTCCEEEEEECCT--
T ss_pred ceEEEEECC----CCcEEEeecCC-CCccccceECCCCCEEEEEEcC----------CcEEEEECCCCCcEEEEeccc--
Confidence 368999986 78888886322 2123449999999999999752 379999999999888864322
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceee------eccce
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY------YTTAQ 158 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 158 (607)
.|+++++.+++....... ..... . .....+.....+ ....+
T Consensus 123 --------~~~~~g~~l~~~~~~~~~------------~~~~~---~----------~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 123 --------EWKGYGTWVANSDCTKLV------------GIEIL---K----------RDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp --------TEEEEEEEEECTTSSEEE------------EEEEE---G----------GGCCCCCSHHHHHHHHHTCCCEE
T ss_pred --------ccCCCCCEEEeccCCccc------------ccccc---c----------cccCCCCcceeeeeeccCCCcce
Confidence 288887766653110000 00000 0 000001110000 12458
Q ss_pred EEEEeC-CCCeeecCCC-CceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCc
Q 007338 159 LVLGSL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (607)
Q Consensus 159 l~~~~~-~g~~~~lt~~-~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (607)
|+++++ +|+.+.++.. ..+..+.||| ||++|+|.+.. +.. .....|+++++++++.+.+... ..
T Consensus 170 l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~------~~~~~l~~~d~~~~~~~~l~~~-~~----- 236 (396)
T 3c5m_A 170 LIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHD------LVDARMWLVNEDGSNVRKIKEH-AE----- 236 (396)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECS-CSS------SCSCCCEEEETTSCCCEESSCC-CT-----
T ss_pred EEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecC-CCC------CCCceEEEEECCCCceeEeecc-CC-----
Confidence 999999 6677766532 3456889999 89999998642 110 0124799999998877776531 00
Q ss_pred ccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcC-CCcEEE
Q 007338 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD-DSLALV 314 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~-Dg~~l~ 314 (607)
......+.|||||+. |++.....+. ....+++++. .+| +.+.+..... .. +.|+| ||+.++
T Consensus 237 -----~~~~~~~~~spdg~~-l~~~~~~~~~-------~~~~l~~~d~--~~g-~~~~l~~~~~-~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 237 -----GESCTHEFWIPDGSA-MAYVSYFKGQ-------TDRVIYKANP--ETL-ENEEVMVMPP-CS-HLMSNFDGSLMV 298 (396)
T ss_dssp -----TEEEEEEEECTTSSC-EEEEEEETTT-------CCEEEEEECT--TTC-CEEEEEECCS-EE-EEEECSSSSEEE
T ss_pred -----CccccceEECCCCCE-EEEEecCCCC-------ccceEEEEEC--CCC-CeEEeeeCCC-CC-CCccCCCCceEE
Confidence 011234799999985 5555332221 1123677663 333 4445543332 22 89999 999766
Q ss_pred EEEec------------cccceEEEEEcCCCCCCCceEeeecccc------ccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 315 NETWY------------KTSQTRTWLVCPGSKDVAPRVLFDRVFE------NVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 315 ~~~~~------------~~~~~~l~~~dl~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
+.... ..+...||++|++++ +.+.|...... +.... ...+.|+|||+.|++....
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAK--SAQKLCKHSTSWDVLDGDRQIT--HPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTT--BCCEEEECCCCCCCBTTBSSTT--CCCCEECTTSSEEEEEECT
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccC--ceEEccCCCCccccccccccCC--CCCceEccCCCeEEEEecC
Confidence 54310 123468999999883 44555432210 00000 1127899999998887653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-12 Score=150.84 Aligned_cols=289 Identities=9% Similarity=-0.026 Sum_probs=172.8
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||+... +++.++++.+.. .+..|.|||| .|+|++.. ++...||.+++++++.++++....
T Consensus 185 ~~lw~~~~-----~~~~~~l~~~~~--~v~~~~~s~d--~l~~~~~~-------dg~~~l~~~~~~g~~~~~l~~~~~-- 246 (1045)
T 1k32_A 185 GKIWIEVN-----SGAFKKIVDMST--HVSSPVIVGH--RIYFITDI-------DGFGQIYSTDLDGKDLRKHTSFTD-- 246 (1045)
T ss_dssp CEEEEEEE-----TTEEEEEECCSS--CCEEEEEETT--EEEEEECT-------TSSCEEEEEETTSCSCEECCCCCS--
T ss_pred CCEEEECC-----CCCeEECcCCCC--cccceEEeCC--EEEEEEec-------cCceEEEEEeCCCCcceEecCCCC--
Confidence 35666442 366777764433 6899999998 78888764 567899999999888888875432
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccc------cccccccccCc-ccccceeeeccc
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIII------SRMTDNLLKDE-YDESLFDYYTTA 157 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~-~~~~~~~~~~~~ 157 (607)
+..+.||||++.+++.....-... .............+.... ...+.. +..+ .+.....+....
T Consensus 247 ----~~~~~~SpDG~~la~~~~~~i~~~----d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~-~~~S~pdG~~la~~~~~ 317 (1045)
T 1k32_A 247 ----YYPRHLNTDGRRILFSKGGSIYIF----NPDTEKIEKIEIGDLESPEDRIISIPSKFA-EDFSPLDGDLIAFVSRG 317 (1045)
T ss_dssp ----SCEEEEEESSSCEEEEETTEEEEE----CTTTCCEEECCCCCCCBCCSEEEECGGGGE-EEEEECGGGCEEEEETT
T ss_pred ----cceeeEcCCCCEEEEEeCCEEEEe----cCCceEeeeeccCcccccccccccccccce-eeecCCCCCEEEEEEcC
Confidence 456799999875555421100000 000001110000000000 000111 1222 334344444467
Q ss_pred eEEEEeC-CCCeeecCCC-C-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEE-EEeCCCCeeEEeccCCCCCCC
Q 007338 158 QLVLGSL-DGTAKDFGTP-A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ-VWTTDGKLVRELCDLPPAEDI 233 (607)
Q Consensus 158 ~l~~~~~-~g~~~~lt~~-~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~-~~d~~~~~~~~l~~~~~~~~~ 233 (607)
.|+++++ +++..+++.. . ....++|| ||++|++.+.. ..++ ++++.+++.+.+...
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~-------------~~l~~~~d~~~~~~~~l~~~------ 377 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTRE-------------GDFLGIYDYRTGKAEKFEEN------ 377 (1045)
T ss_dssp EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETT-------------EEEEEEEETTTCCEEECCCC------
T ss_pred EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECC-------------CceEEEEECCCCCceEecCC------
Confidence 8999998 5677777643 3 45689999 99999998641 2688 999998887776520
Q ss_pred CcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee-ecCcccceeeEcCCCcE
Q 007338 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLA 312 (607)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~ws~Dg~~ 312 (607)
......++|||||+. |++.. ....+++++. .+| +...+. .....+..++|||||+.
T Consensus 378 -------~~~~~~~~~SpDG~~-la~~~------------~~~~v~~~d~--~tg-~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 378 -------LGNVFAMGVDRNGKF-AVVAN------------DRFEIMTVDL--ETG-KPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp -------CCSEEEEEECTTSSE-EEEEE------------TTSEEEEEET--TTC-CEEEEEECSSSCCCCEEECTTSCE
T ss_pred -------ccceeeeEECCCCCE-EEEEC------------CCCeEEEEEC--CCC-ceEEeccCCCCCccceEECCCCCe
Confidence 012235899999984 33321 1235677764 344 444444 34455678999999998
Q ss_pred EEEEEecc------ccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 313 LVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 313 l~~~~~~~------~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
|++..... .....|+++|++++ +.+.++...... ..+.|+|||+.|++...
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g--~~~~l~~~~~~~-------~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTENSHD-------YAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTT--EEEECSCSSSBE-------EEEEECTTSCEEEEEES
T ss_pred EEEEecCccccccCCCCCeEEEEECCCC--cEEEeeCCCccc-------CCceEcCCCCEEEEEec
Confidence 77654322 23458999999883 444454321111 01789999999988765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-12 Score=123.28 Aligned_cols=268 Identities=15% Similarity=0.119 Sum_probs=162.8
Q ss_pred CCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccc
Q 007338 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (607)
Q Consensus 59 ~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 138 (607)
.....|+++|+.+++.+++..... .+..+.|+||++++++..
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~--------------------------------- 60 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPE-----LFEAPNWSPDGKYLLLNS--------------------------------- 60 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESS-----CCEEEEECTTSSEEEEEE---------------------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCc-----ceEeeEECCCCCEEEEEc---------------------------------
Confidence 345789999999999887765433 267899999998777631
Q ss_pred cccccCcccccceeeeccceEEEEeC-C-CCeeecCCC---CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEE
Q 007338 139 DNLLKDEYDESLFDYYTTAQLVLGSL-D-GTAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (607)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~-g~~~~lt~~---~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (607)
...|+++++ + ++...+... ..+..+.|||||++|++....... ...|+.
T Consensus 61 -----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---------~~~l~~ 114 (297)
T 2ojh_A 61 -----------------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFG---------KSAIYL 114 (297)
T ss_dssp -----------------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTS---------SCEEEE
T ss_pred -----------------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCC---------cceEEE
Confidence 135667777 5 666655432 244679999999999998743210 237999
Q ss_pred EeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCcee
Q 007338 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (607)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 293 (607)
+++.++..+.+... .....+.|||||+. |++....++ .-.++.++. .+.+...
T Consensus 115 ~~~~~~~~~~~~~~--------------~~~~~~~~spdg~~-l~~~~~~~~---------~~~l~~~~~---~~~~~~~ 167 (297)
T 2ojh_A 115 LPSTGGTPRLMTKN--------------LPSYWHGWSPDGKS-FTYCGIRDQ---------VFDIYSMDI---DSGVETR 167 (297)
T ss_dssp EETTCCCCEECCSS--------------SSEEEEEECTTSSE-EEEEEEETT---------EEEEEEEET---TTCCEEE
T ss_pred EECCCCceEEeecC--------------CCccceEECCCCCE-EEEEECCCC---------ceEEEEEEC---CCCcceE
Confidence 99988877776531 11234799999984 443332211 113444432 2224445
Q ss_pred eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeecc--ccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 294 l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+.........+.|+|||..+++.... .+..+||.+++.+ +..+.+.... +.. +.|+|+|+.|++..
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~i~~~~~~~--~~~~~~~~~~~~~~~---------~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSR-TGQMQIWRVRVDG--SSVERITDSAYGDWF---------PHPSPSGDKVVFVS 235 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETTS--SCEEECCCCSEEEEE---------EEECTTSSEEEEEE
T ss_pred cccCCCccccceECCCCCEEEEEecC-CCCccEEEECCCC--CCcEEEecCCcccCC---------eEECCCCCEEEEEE
Confidence 55555567789999999977765422 3456899999876 3444443221 222 78999999988876
Q ss_pred eeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecc
Q 007338 372 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 448 (607)
Q Consensus 372 ~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~ 448 (607)
........ .......|..+++++++...+...... ...+. ...|+||++.+++.....
T Consensus 236 ~~~~~~~~----------~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~-------~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 236 YDADVFDH----------PRDLDVRVQLMDMDGGNVETLFDLFGG--QGTMN-------SPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTCCSC----------CSSEEEEEEEEETTSCSCEEEEEEEES--TTTSC-------SCCBCTTSSEEEEEEECC
T ss_pred cCCCCCcc----------cccCceEEEEEecCCCCceeeeccCCC--Ccccc-------cceECCCCCEEEEEEecc
Confidence 54210000 000011244578777776655432100 00111 246899999888776543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-12 Score=141.70 Aligned_cols=275 Identities=15% Similarity=0.092 Sum_probs=161.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccccc---c--cceEEe--cCCeE-EEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAV---F--GSFVWV--NNSTL-LIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~---~--~~~~Ws--pd~~~-l~~ 103 (607)
.+..|+||+| .++|++.+..+ ++...||++ ..+|+.++||..... +... + ..+.|+ ||++. |++
T Consensus 25 ~~~~~~~s~~--~~~~~~~~~~~----~~~~~l~~~-~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 25 RPACVGAVGD--EVWWVAPRPAE----AGRATLVRR-RADGAEESALPAPWN-VRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp CCEEEEEETT--EEEEEEEETTT----TTEEEEEEE-CTTSCEEESSCTTCC-BCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred ccceeEEcCC--eEEEEecCccc----CCcEEEEEE-CCCCCcceeCCCCcc-ccccccccCCccceeeeecCCCeEEEE
Confidence 6889999955 78888764221 456889988 667888999865421 1000 0 156687 89776 666
Q ss_pred EecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC----CCeeecCCC-----
Q 007338 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----GTAKDFGTP----- 174 (607)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~lt~~----- 174 (607)
+.. ...+||++++. ++.++|+..
T Consensus 97 ~~~------------------------------------------------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~ 128 (662)
T 3azo_A 97 THF------------------------------------------------GDQRLYAFEPDAPGGAVPRPLTPVSAVGG 128 (662)
T ss_dssp EBT------------------------------------------------TTCCEEEECTTSTTCCCCEECSCCCCSTT
T ss_pred EEC------------------------------------------------CCCeEEEEcCCCCCCCCCEeccCCccCCC
Confidence 410 02468888887 677888762
Q ss_pred C-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC------CeeEEec-cCCCCCCCCcccccccCCCCc
Q 007338 175 A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------KLVRELC-DLPPAEDIPVCYNSVREGMRS 246 (607)
Q Consensus 175 ~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------~~~~~l~-~~~~~~~~~~~~~~~~~~~~~ 246 (607)
. ....++|||||++|++++...... .+ .....+|+++++++ ++.+.|+ .
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-------------------- 185 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGE--GP-SDVRRFLAAVPLDGSAAADRSAVRELSDD-------------------- 185 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSS--ST-TCEEEEEEEEETTSTTTTCGGGSEESSCS--------------------
T ss_pred CccccCcEECCCCCEEEEEEecccCC--CC-CCceeEEEEEECCCCccccCCceeEEEec--------------------
Confidence 2 456899999999999997541100 00 00024788999887 5544443 1
Q ss_pred ceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc----c
Q 007338 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----S 322 (607)
Q Consensus 247 ~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~----~ 322 (607)
.......+.|||||+.|++..+... .
T Consensus 186 --------------------------------------------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 186 --------------------------------------------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp --------------------------------------------------CSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred --------------------------------------------------CCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 1112345778888887766553321 2
Q ss_pred ceEEEEEcCCCCCC---CceEeeec---cccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcce
Q 007338 323 QTRTWLVCPGSKDV---APRVLFDR---VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPF 396 (607)
Q Consensus 323 ~~~l~~~dl~~~~~---~~~~l~~~---~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~ 396 (607)
...||++|+++. + +.+.++.. .+.. +.|+|||+ ++|.....+ ...
T Consensus 216 ~~~i~~~d~~~~-g~~~~~~~l~~~~~~~~~~---------~~~spdg~-l~~~~~~~~--~~~---------------- 266 (662)
T 3azo_A 216 GTELKTARVTED-GRFADTRTLLGGPEEAIAQ---------AEWAPDGS-LIVATDRTG--WWN---------------- 266 (662)
T ss_dssp CEEEEEEEECTT-SCEEEEEEEEEETTBCEEE---------EEECTTSC-EEEEECTTS--SCE----------------
T ss_pred CcEEEEEEECCC-CcccccEEeCCCCCceEcc---------eEECCCCe-EEEEECCCC--CeE----------------
Confidence 358999999831 3 34455432 1222 88999999 666654321 222
Q ss_pred eEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecC
Q 007338 397 LDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 470 (607)
Q Consensus 397 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~ 470 (607)
|+++++++++.+.++..... ..... .........+++++. ++++.+. .-..||++++.+++.++|+..
T Consensus 267 l~~~~~~~~~~~~l~~~~~~--~~~p~-w~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 267 LHRVDPATGAATQLCRREEE--FAGPL-WTPGMRWFAPLANGL-IAVVHGK--GAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp EEEECTTTCCEEESSCCSSB--SSCCC-CSTTCCSEEECTTSC-EEEEEBS--SSCEEEEEETTTTEEEECCSS
T ss_pred EEEEECCCCceeeccccccc--ccCcc-ccccCceEeEeCCCE-EEEEEEc--CccEEEEEECCCCcEEEecCC
Confidence 33567767776666543211 10000 000000123455544 6666665 456799999888887777654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-12 Score=128.00 Aligned_cols=115 Identities=10% Similarity=0.104 Sum_probs=78.8
Q ss_pred ecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 25 HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 25 t~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+.....++.|++ ||++|||+....... ......+||++|+++++.++| .. +..+.|||||+.|++.
T Consensus 9 ~~l~~~~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~l---~~------~~~~~~SpDg~~la~~ 76 (347)
T 2gop_A 9 KTFAKFAYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNARRFI---EN------ATMPRISPDGKKIAFM 76 (347)
T ss_dssp -CCCCSCEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCEEEE---ES------CEEEEECTTSSEEEEE
T ss_pred ccceeeEEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCceEEc---cc------CCCeEECCCCCEEEEE
Confidence 33444446789999 999999987541100 012367899999999998877 11 5689999998866664
Q ss_pred ecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCCceeeeeeC
Q 007338 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPS 183 (607)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~~~~~~~~S 183 (607)
.... + . ...+||++++ +|+.++++....+..+.||
T Consensus 77 ~~~~---------------------~-----------------~------~~~~l~~~~~~~g~~~~l~~~~~~~~~~ws 112 (347)
T 2gop_A 77 RANE---------------------E-----------------K------KVSEIWVADLETLSSKKILEAKNIRSLEWN 112 (347)
T ss_dssp EEET---------------------T-----------------T------TEEEEEEEETTTTEEEEEEEESEEEEEEEC
T ss_pred Eecc---------------------C-----------------C------CcceEEEEECCCCceEEEEcCCCccceeEC
Confidence 2100 0 0 1357999998 5677777543226789999
Q ss_pred CCCceEEEEEcc
Q 007338 184 PDQKYVLITSMH 195 (607)
Q Consensus 184 pDg~~i~~~~~~ 195 (607)
|||++|+|.+..
T Consensus 113 pdg~~l~~~~~~ 124 (347)
T 2gop_A 113 EDSRKLLIVGFK 124 (347)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCEEEEEEcc
Confidence 999999999753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-10 Score=117.43 Aligned_cols=247 Identities=13% Similarity=0.051 Sum_probs=151.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|++.++. +++...... ....+..+.|||||++|+++... ...|+++|+++++..+......
T Consensus 13 ~v~v~d~~----~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~~~--- 74 (391)
T 1l0q_A 13 NISVIDVT----SNKVTATIP--VGSNPMGAVISPDGTKVYVANAH---------SNDVSIIDTATNNVIATVPAGS--- 74 (391)
T ss_dssp EEEEEETT----TTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGG---------GTEEEEEETTTTEEEEEEECSS---
T ss_pred EEEEEECC----CCeEEEEee--cCCCcceEEECCCCCEEEEECCC---------CCeEEEEECCCCeEEEEEECCC---
Confidence 57788876 565554432 23357899999999998776532 3689999999998765543333
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
.+..+.|+||++.++++.. ....|+++++
T Consensus 75 --~v~~~~~spdg~~l~~~~~------------------------------------------------~~~~v~v~d~~ 104 (391)
T 1l0q_A 75 --SPQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDTT 104 (391)
T ss_dssp --SEEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEETT
T ss_pred --CccceEECCCCCEEEEEEC------------------------------------------------CCCEEEEEECC
Confidence 2678999999887665410 0135666676
Q ss_pred CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 ~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+++.. .+........++|+|||++|+++... ...|++||+.+++....... ...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~-------------~~~ 159 (391)
T 1l0q_A 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSV-------------GRS 159 (391)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEEC-------------CSS
T ss_pred CCeEEEEEeCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEEec-------------CCC
Confidence 45433 23333445689999999999877542 23799999988765544321 122
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccc
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 323 (607)
+..+.|+|||+. + ++... ....+++++. ..+ +.............+.|+|||..++..... ...
T Consensus 160 ~~~~~~~~dg~~-l-~~~~~----------~~~~v~~~d~--~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~ 223 (391)
T 1l0q_A 160 PKGIAVTPDGTK-V-YVANF----------DSMSISVIDT--VTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (391)
T ss_dssp EEEEEECTTSSE-E-EEEET----------TTTEEEEEET--TTT-EEEEEEECSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred cceEEECCCCCE-E-EEEeC----------CCCEEEEEEC--CCC-eEEEEEecCCCccceEECCCCCEEEEEecC-cCC
Confidence 345899999983 2 22211 1134666663 222 222222333456678999999876554321 123
Q ss_pred eEEEEEcCCCCCCCceEeeec--cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 324 TRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 324 ~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
..|+++|+.++ +....+.. .+.. +.|+|+|+.+++...
T Consensus 224 ~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 224 NTVSMIDTGTN--KITARIPVGPDPAG---------IAVTPDGKKVYVALS 263 (391)
T ss_dssp CEEEEEETTTT--EEEEEEECCSSEEE---------EEECTTSSEEEEEET
T ss_pred CcEEEEECCCC--eEEEEEecCCCccE---------EEEccCCCEEEEEcC
Confidence 47888999873 22222221 1222 789999998877653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-10 Score=113.15 Aligned_cols=277 Identities=7% Similarity=-0.016 Sum_probs=155.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
....+.|||||++|++....... ......|+++|+++++..+....... ...+.|+||++.++++...
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~---- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRK---LDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNTV---- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTT---TEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEETT----
T ss_pred CccceEECCCCCEEEEEcCCCcC---CCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEecC----
Confidence 46788999999998666532100 01257899999999987655433221 4678999998866654210
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eecCCC----------Cceee
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP----------AVYTA 179 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~lt~~----------~~~~~ 179 (607)
...|+++|+ +++. ..+... .....
T Consensus 110 --------------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 110 --------------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp --------------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred --------------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCce
Confidence 124445555 3432 222111 12357
Q ss_pred eeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEE
Q 007338 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (607)
Q Consensus 180 ~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~ 259 (607)
+.|||||+++++..... ...|+++|+++++....... ....+..+.|+|||+. + +
T Consensus 146 ~~~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~------------~~~~~~~~~~s~dg~~-l-~ 200 (353)
T 3vgz_A 146 LVADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQN------------TGKMSTGLALDSEGKR-L-Y 200 (353)
T ss_dssp EEEETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECC------------CCTTCCCCEEETTTTE-E-E
T ss_pred EEECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecC------------CCCccceEEECCCCCE-E-E
Confidence 89999999988876321 23699999988766543220 0122456899999983 2 3
Q ss_pred EEeecCCCCccccCCCceEEeccCCCCCCCCceeeee----cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCC
Q 007338 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (607)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~----~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~ 335 (607)
+... ...+++++. .++.....+.. .......++|+|||..++.... ....|+++|+.++
T Consensus 201 ~~~~-----------~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~- 263 (353)
T 3vgz_A 201 TTNA-----------DGELITIDT--ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KAAEVLVVDTRNG- 263 (353)
T ss_dssp EECT-----------TSEEEEEET--TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEETTTC-
T ss_pred EEcC-----------CCeEEEEEC--CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CCCEEEEEECCCC-
Confidence 3211 134555553 23211111211 1122345899999986544332 2347999999873
Q ss_pred CCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCC
Q 007338 336 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (607)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (607)
+....+. ... + ..+.|+|||+.+++.... ...+ ..+|+++++........
T Consensus 264 -~~~~~~~--~~~----~--~~~~~s~dg~~l~v~~~~----~~~v----------------~~~d~~~~~~~~~~~~~- 313 (353)
T 3vgz_A 264 -NILAKVA--APE----S--LAVLFNPARNEAYVTHRQ----AGKV----------------SVIDAKSYKVVKTFDTP- 313 (353)
T ss_dssp -CEEEEEE--CSS----C--CCEEEETTTTEEEEEETT----TTEE----------------EEEETTTTEEEEEEECC-
T ss_pred -cEEEEEE--cCC----C--ceEEECCCCCEEEEEECC----CCeE----------------EEEECCCCeEEEEEecC-
Confidence 3222221 111 1 127899999987776532 1122 24677666544333221
Q ss_pred cccceeeeeeecCCCcccccccCCEEEEEeec
Q 007338 416 EKYFETAVALVFGQGEEDINLNQLKILTSKES 447 (607)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss 447 (607)
..+.. ..|++|++.++++...
T Consensus 314 ----~~~~~-------~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 ----THPNS-------LALSADGKTLYVSVKQ 334 (353)
T ss_dssp ----SEEEE-------EEECTTSCEEEEEEEC
T ss_pred ----CCCCe-------EEEcCCCCEEEEEEcc
Confidence 12222 3578899877776655
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-12 Score=136.84 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=131.6
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC--CCCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~--~~g~~~~lt~~~~~ 83 (607)
+||. +. +|+.++++.... ..+..|.|||| +|+|++.... + .....||++++ .++.. +++....
T Consensus 47 ~lw~--~~----~g~~~~lt~~~~-~~~~~~~~spd--~~l~~~~~~~--g--~~~~~l~~~~~~~~g~~~-~l~~~~~- 111 (582)
T 3o4h_A 47 NAYL--YD----GGETVKLNREPI-NSVLDPHYGVG--RVILVRDVSK--G--AEQHALFKVNTSRPGEEQ-RLEAVKP- 111 (582)
T ss_dssp EEEE--EE----TTEEEECCSSCC-SEECEECTTCS--EEEEEEECST--T--SCCEEEEEEETTSTTCCE-ECTTSCS-
T ss_pred eEEE--Ec----CCCcEeeecccc-cccccccCCCC--eEEEEeccCC--C--CcceEEEEEeccCCCccc-cccCCCC-
Confidence 3666 43 888999985432 26889999999 6888776411 0 34578999999 65554 6764432
Q ss_pred cccccccceEEecCCe-EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 84 CLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
...+.|+||++ +++.+.. ...+.++
T Consensus 112 -----~~~~~~s~dg~~~~~~s~~-------------------------------------------------~~~~~l~ 137 (582)
T 3o4h_A 112 -----MRILSGVDTGEAVVFTGAT-------------------------------------------------EDRVALY 137 (582)
T ss_dssp -----BEEEEEEECSSCEEEEEEC-------------------------------------------------SSCEEEE
T ss_pred -----ceeeeeCCCCCeEEEEecC-------------------------------------------------CCCceEE
Confidence 34568999965 4554310 0111134
Q ss_pred eC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 163 SL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 163 ~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
++ +|+.++++.... ..+.|||||++|++.+..... ...||++|+++++.++|+...
T Consensus 138 d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~---------~~~i~~~d~~~g~~~~l~~~~------------- 194 (582)
T 3o4h_A 138 ALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGE------------- 194 (582)
T ss_dssp EEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETT---------EEEEEEEETTTCCCEEECCSS-------------
T ss_pred EccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCC---------CeEEEEEcCCCCCceEeecCC-------------
Confidence 65 566666654333 678999999999988754211 136999999999888886411
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceee--------EcCCCcEE
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS--------WCDDSLAL 313 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~--------ws~Dg~~l 313 (607)
.....++|||||+. |+ .. ...+ ...+++++. .+| +.+.+.........+. ||||| .+
T Consensus 195 ~~~~~~~~SpDG~~-l~-~~-~~~~--------~~~i~~~d~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~ 259 (582)
T 3o4h_A 195 GSFSSASISPGMKV-TA-GL-ETAR--------EARLVTVDP--RDG-SVEDLELPSKDFSSYRPTAITWLGYLPDG-RL 259 (582)
T ss_dssp CEEEEEEECTTSCE-EE-EE-ECSS--------CEEEEEECT--TTC-CEEECCCSCSHHHHHCCSEEEEEEECTTS-CE
T ss_pred CccccceECCCCCE-EE-Ec-cCCC--------eeEEEEEcC--CCC-cEEEccCCCcChhhhhhccccceeEcCCC-cE
Confidence 11246999999994 33 21 1111 135677764 233 4443333344555677 99999 44
Q ss_pred EEEEeccccceEEEEE
Q 007338 314 VNETWYKTSQTRTWLV 329 (607)
Q Consensus 314 ~~~~~~~~~~~~l~~~ 329 (607)
++.... .+..+||.+
T Consensus 260 ~~~~~~-~g~~~l~~~ 274 (582)
T 3o4h_A 260 AVVARR-EGRSAVFID 274 (582)
T ss_dssp EEEEEE-TTEEEEEET
T ss_pred EEEEEc-CCcEEEEEE
Confidence 443322 234566655
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-11 Score=121.25 Aligned_cols=87 Identities=8% Similarity=-0.112 Sum_probs=55.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|++..+.. ++|+.+.+...........+.|||||+ |++.... .....|+++++++|+.+++......
T Consensus 17 ~i~v~~~d~--~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~-- 84 (347)
T 3hfq_A 17 GIYQGTLDT--TAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAP-- 84 (347)
T ss_dssp EEEEEEEET--TTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEE--
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecC--
Confidence 466666542 366666554333334578899999999 6665532 2357899999988887666531110
Q ss_pred cccccceEEecCCeEEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~ 104 (607)
......+.|+||++.+++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~ 103 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSA 103 (347)
T ss_dssp SCCCSEEEEETTTTEEEEE
T ss_pred CCCCEEEEECCCCCEEEEE
Confidence 1124578999999877765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-11 Score=132.55 Aligned_cols=282 Identities=9% Similarity=0.032 Sum_probs=156.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc--cccccccceEEecCCeEEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~--~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
.++.|. |||++++|..+... .....||+++..+++.+.|++.... .....+..+.||||++.+++.....
T Consensus 75 ~~~~p~--~dG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~- 146 (710)
T 2xdw_A 75 KYSCHF--KKGKRYFYFYNTGL-----QNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS- 146 (710)
T ss_dssp EECCCE--EETTEEEEEEECSS-----CSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET-
T ss_pred cCCCCE--EECCEEEEEEEcCC-----ceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC-
Confidence 456664 99999999987521 2245899999988887766432110 0001245889999988776642110
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-ceeeeeeCCCCc
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQK 187 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-~~~~~~~SpDg~ 187 (607)
|. ...+|+++++ +|+..+++... .+..++|||||+
T Consensus 147 --------------------G~-----------------------~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~ 183 (710)
T 2xdw_A 147 --------------------GS-----------------------DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK 183 (710)
T ss_dssp --------------------TC-----------------------SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS
T ss_pred --------------------CC-----------------------ceEEEEEEECCCCCCCcccccCcccceEEEEeCCC
Confidence 11 1247899999 66665543222 245799999999
Q ss_pred eEEEEEccCCCc---cccCCCcCCccEEEEeCCCCeeE--EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEe
Q 007338 188 YVLITSMHRPYS---YKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 188 ~i~~~~~~~~~~---~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (607)
.|+|++...+.. ........+..||++++.++... .+..
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~------------------------------------ 227 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE------------------------------------ 227 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC------------------------------------
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec------------------------------------
Confidence 999997643210 00000011335777776554210 0000
Q ss_pred ecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc-ceEEEEEcCCC------CC
Q 007338 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS-QTRTWLVCPGS------KD 335 (607)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~-~~~l~~~dl~~------~~ 335 (607)
.. ........+.|||||+.|++....... ...||++|+++ +.
T Consensus 228 -----------------------~~--------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 228 -----------------------FP--------DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp -----------------------CT--------TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred -----------------------cC--------CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 00 011123468899999987766543222 56899999976 32
Q ss_pred CCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCC---eeEEee
Q 007338 336 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS---KERIWE 412 (607)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~---~~~l~~ 412 (607)
...+.|....-.. ...|+++|+.+++.....+ .... |..+++++++ .+.|+.
T Consensus 277 ~~~~~l~~~~~~~--------~~~~s~dg~~l~~~s~~~~-~~~~----------------l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 277 LKWVKLIDNFEGE--------YDYVTNEGTVFTFKTNRHS-PNYR----------------LINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp CCCEEEECSSSSC--------EEEEEEETTEEEEEECTTC-TTCE----------------EEEEETTSCCGGGCEEEEC
T ss_pred cceEEeeCCCCcE--------EEEEeccCCEEEEEECCCC-CCCE----------------EEEEeCCCCCcccceeccC
Confidence 2355665321111 1457889998888764321 1222 3356776553 244543
Q ss_pred cCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCc-eeeEe
Q 007338 413 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK-SSQIT 468 (607)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~-~~~Lt 468 (607)
.... ..+.. ..++ +++.++++...... ..|+++++.+++ .+.|+
T Consensus 332 ~~~~---~~~~~-------~~~~-~~~~lv~~~~~~g~-~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 332 EHEK---DVLEW-------VACV-RSNFLVLCYLHDVK-NTLQLHDLATGALLKIFP 376 (710)
T ss_dssp CCSS---CEEEE-------EEEE-TTTEEEEEEEETTE-EEEEEEETTTCCEEEEEC
T ss_pred CCCC---CeEEE-------EEEE-cCCEEEEEEEECCE-EEEEEEECCCCCEEEecC
Confidence 3210 01111 1233 35677777765443 569999875554 45554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-10 Score=127.22 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=153.5
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc--cccccccceEEecCCeEEEEEecCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~--~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
.+.| +|||++++|.++... .....||+++..+++.++|++.... .....+..+.||||++.++++....
T Consensus 72 ~~~p--~~dG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~-- 142 (695)
T 2bkl_A 72 VSTP--SRRNGRFFYVRTHKD-----KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN-- 142 (695)
T ss_dssp ECCC--EEETTEEEEEEECTT-----CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET--
T ss_pred CCCC--EEECCEEEEEEEcCC-----CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC--
Confidence 4444 499999999987521 2357899999998988888753210 0011256889999988776653110
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee---ecCCCCceeeeeeCCCC
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGTPAVYTAVEPSPDQ 186 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~lt~~~~~~~~~~SpDg 186 (607)
|. ...+|+++|+ +|+.. .+... ....++|||||
T Consensus 143 -------------------G~-----------------------~~~~i~v~dl~tg~~~~~~~~~~~-~~~~~~wspDg 179 (695)
T 2bkl_A 143 -------------------AA-----------------------DEAVLHVIDVDSGEWSKVDVIEGG-KYATPKWTPDS 179 (695)
T ss_dssp -------------------TC-----------------------SCCEEEEEETTTCCBCSSCCBSCC-TTCCCEECTTS
T ss_pred -------------------CC-----------------------ceEEEEEEECCCCCCcCCcccCcc-cccceEEecCC
Confidence 11 1258899999 56654 22211 22579999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCee--EEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
+.|+|++.+..............+||++++.++.. +.+..
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-------------------------------------- 221 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-------------------------------------- 221 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--------------------------------------
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--------------------------------------
Confidence 99999976432100000001134688888876531 11110
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
.. ........+.|||||+.|++..........||+++..+ +..+.|...
T Consensus 222 ---------------------~~--------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~--~~~~~l~~~ 270 (695)
T 2bkl_A 222 ---------------------RT--------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE--KDFRLLVKG 270 (695)
T ss_dssp ---------------------CC--------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--SSCEEEEEC
T ss_pred ---------------------cC--------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--CceEEeecC
Confidence 00 01123446889999988776654332456899998766 456666532
Q ss_pred cccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCe---eEEeecCCccccee
Q 007338 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK---ERIWESNREKYFET 421 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~ 421 (607)
.-.. . .+.| ++|+ +++.....+ .... |..+++++++. +.++..... ..
T Consensus 271 ~~~~-~------~~~~-~~g~-l~~~s~~~~-~~~~----------------l~~~d~~~~~~~~~~~l~~~~~~---~~ 321 (695)
T 2bkl_A 271 VGAK-Y------EVHA-WKDR-FYVLTDEGA-PRQR----------------VFEVDPAKPARASWKEIVPEDSS---AS 321 (695)
T ss_dssp SSCC-E------EEEE-ETTE-EEEEECTTC-TTCE----------------EEEEBTTBCSGGGCEEEECCCSS---CE
T ss_pred CCce-E------EEEe-cCCc-EEEEECCCC-CCCE----------------EEEEeCCCCCccCCeEEecCCCC---Ce
Confidence 2111 0 0445 6777 666653211 1222 33567766552 445432201 01
Q ss_pred eeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEe
Q 007338 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (607)
Q Consensus 422 ~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt 468 (607)
+.. ++..++.++++..... -..|+++++.++..+.|.
T Consensus 322 l~~---------~~~~~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~ 358 (695)
T 2bkl_A 322 LLS---------VSIVGGHLSLEYLKDA-TSEVRVATLKGKPVRTVQ 358 (695)
T ss_dssp EEE---------EEEETTEEEEEEEETT-EEEEEEEETTCCEEEECC
T ss_pred EEE---------EEEECCEEEEEEEECC-EEEEEEEeCCCCeeEEec
Confidence 111 1223567777766544 456999987554455553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-10 Score=112.62 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=53.0
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+|++.++.. ++|+.+.++.+ .....+...|||||++|++....+. ..+.-.+|.++.++|+.+++.......
T Consensus 27 ~~i~~~~~d~--~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~----~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 27 KGIYTFRFNE--ETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSK----DQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp CEEEEEEEET--TTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSS----TTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCEEEEEEeC--CCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCC----CCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 3677776642 46777777654 4445677899999999877764210 024556677777778877665332111
Q ss_pred ccccccceEEecCCeEEEEE
Q 007338 85 LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+.+ |++.++.+
T Consensus 100 --~~p~~~~~--dg~~l~~~ 115 (361)
T 3scy_A 100 --ADPCYLTT--NGKNIVTA 115 (361)
T ss_dssp --SCEEEEEE--CSSEEEEE
T ss_pred --CCcEEEEE--CCCEEEEE
Confidence 01223344 77766654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-09 Score=108.11 Aligned_cols=293 Identities=11% Similarity=0.043 Sum_probs=154.3
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~ 114 (607)
++.|++++++++.+.. ....|.++|+++++.......... .. .+.|+||++.++.+..
T Consensus 2 ~~~~~~~~~~~~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~~~-------- 59 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVEQ---------HLRRISFFSTDTLEILNQITLGYD----FV-DTAITSDCSNVVVTSD-------- 59 (331)
T ss_dssp -----CCCCEEEEEEG---------GGTEEEEEETTTCCEEEEEECCCC----EE-EEEECSSSCEEEEEES--------
T ss_pred ceeEcCCCCEEEEEec---------CCCeEEEEeCcccceeeeEEccCC----cc-eEEEcCCCCEEEEEeC--------
Confidence 5678888887655543 346899999999987655433322 14 7899999886665421
Q ss_pred CccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC--eeecCCCCceee-eeeCCCCceEE
Q 007338 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTA-VEPSPDQKYVL 190 (607)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~lt~~~~~~~-~~~SpDg~~i~ 190 (607)
....|+++++ +++ ...+........ +.|||||++|+
T Consensus 60 ----------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 99 (331)
T 3u4y_A 60 ----------------------------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99 (331)
T ss_dssp ----------------------------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred ----------------------------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE
Confidence 0236777777 554 333433333345 89999999998
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCcc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~ 270 (607)
+...... ...|++||+++++....... ...+..+.|+|||+. ++ +...+.+.
T Consensus 100 -~~~~~~~---------~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~spdg~~-l~-~~~~~~~~--- 151 (331)
T 3u4y_A 100 -TVTGLNH---------PFNMQSYSFLKNKFISTIPI-------------PYDAVGIAISPNGNG-LI-LIDRSSAN--- 151 (331)
T ss_dssp -ECCCSSS---------SCEEEEEETTTTEEEEEEEC-------------CTTEEEEEECTTSSC-EE-EEEETTTT---
T ss_pred -EecCCCC---------cccEEEEECCCCCeEEEEEC-------------CCCccceEECCCCCE-EE-EEecCCCc---
Confidence 4322100 12799999988766543221 122346999999984 33 32221111
Q ss_pred ccCCCceEEeccCCCCCCCCc----eeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCc-eEe--ee
Q 007338 271 EVSPRDIIYTQPAEPAEGEKP----EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP-RVL--FD 343 (607)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~----~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~-~~l--~~ 343 (607)
.+.+++. ...| .. ............+.|+|||+.++.... ....|+++|+.++ +. +.+ +.
T Consensus 152 ------~i~~~~~-~~~g-~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~--~~~~~~~~~~ 218 (331)
T 3u4y_A 152 ------TVRRFKI-DADG-VLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNP--ENITLLNAVG 218 (331)
T ss_dssp ------EEEEEEE-CTTC-CEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSST--TSCEEEEEEE
T ss_pred ------eEEEEEE-CCCC-cEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCC--cccceeeecc
Confidence 1333332 0111 11 111122233567899999986544332 1246888898874 32 112 21
Q ss_pred ccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccc-eee
Q 007338 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF-ETA 422 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~-~~~ 422 (607)
.. . .+. .+.|+|||+.+++.... ...+ ..+|+++++.+.+......... ...
T Consensus 219 ~~--~---~~~--~~~~spdg~~l~v~~~~----~~~i----------------~~~d~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
T 3u4y_A 219 TN--N---LPG--TIVVSRDGSTVYVLTES----TVDV----------------FNFNQLSGTLSFVKSFGHGLLIDPRP 271 (331)
T ss_dssp CS--S---CCC--CEEECTTSSEEEEECSS----EEEE----------------EEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred CC--C---CCc--eEEECCCCCEEEEEEcC----CCEE----------------EEEECCCCceeeecccccccccCCCC
Confidence 11 1 111 28899999988776532 1112 2467767765443211100000 000
Q ss_pred eeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCc
Q 007338 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (607)
Q Consensus 423 ~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~ 463 (607)
.. ......|++|++.++++... -..+.++++.+..
T Consensus 272 ~~---~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 272 LF---GANQMALNKTETKLFISANI---SRELKVFTISGKV 306 (331)
T ss_dssp GT---TCCCEEECTTSSEEEEEETT---TTEEEEEETTSCE
T ss_pred cc---cccceEECCCCCEEEEecCC---CCcEEEEEecCCc
Confidence 00 00013688999987665433 2357788875543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-09 Score=108.44 Aligned_cols=257 Identities=9% Similarity=-0.008 Sum_probs=161.0
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCccccc----CCCceeEEEEECCCCceeecccCCC
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNV----SSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~----~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
||--++. +++.++|+. ...--++|+|++|+|+......+.. ......||++++++++.++|+...
T Consensus 39 ly~~~~d----g~~~~~l~~------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~- 107 (302)
T 3s25_A 39 LYAMNID----GSNIHKLSN------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP- 107 (302)
T ss_dssp EEEEETT----SCSCEEEEE------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC-
T ss_pred EEEEcCC----CCCCEEccC------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC-
Confidence 6666654 667888872 2346779999999999865210000 012578999999999888886321
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
...|+++++.|+++... . .....|+++
T Consensus 108 --------~~~~s~~g~~Iy~~~~~--------------------~-------------------------~~~~~Iy~~ 134 (302)
T 3s25_A 108 --------CIYASLIGNYIYYLHYD--------------------T-------------------------QTATSLYRI 134 (302)
T ss_dssp --------EEEEEEETTEEEEEEES--------------------S-------------------------SSCEEEEEE
T ss_pred --------ccEEEEeCCEEEEEeec--------------------C-------------------------CCCceEEEE
Confidence 23688886666664100 0 013579999
Q ss_pred eCCC-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 163 SLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 163 ~~~g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+++| ..++|+.... ..++|+|++|+|+... ...||+++++++..+.|..
T Consensus 135 ~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~g------------~~~Iy~~~l~g~~~~~l~~--------------- 184 (302)
T 3s25_A 135 RIDGEEKKKIKNHYL---FTCNTSDRYFYYNNPK------------NGQLYRYDTASQSEALFYD--------------- 184 (302)
T ss_dssp ETTSCCCEEEESSCC---CCSEEETTEEEEECTT------------TCCEEEEETTTTEEEEEEC---------------
T ss_pred ECCCCCeEEEeCCCc---eEeeEECCEEEEEeCC------------CceEEEEECCCCCEEEEeC---------------
Confidence 9976 6777775433 4568899999999541 1379999999886665421
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.. ...+ ++|++..|++..+...
T Consensus 185 -------------------------------------------------------~~--~~~~-~~P~g~~iy~t~~~~~ 206 (302)
T 3s25_A 185 -------------------------------------------------------CN--CYKP-VVLDDTNVYYMDVNRD 206 (302)
T ss_dssp -------------------------------------------------------SC--EEEE-EEEETTEEEEEEGGGT
T ss_pred -------------------------------------------------------CC--ccce-eeecCCEEEEEEcCCC
Confidence 00 0012 3488887777665422
Q ss_pred cceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeee
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 401 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d 401 (607)
.+|+++++++. ..+.|++... +.++|+|+.|+|..... .. .|.+++
T Consensus 207 --~~I~~~~ldG~--~~~~Lt~~~~-----------~~~~~~g~~Iy~~~~~~---~~----------------~i~~~~ 252 (302)
T 3s25_A 207 --NAIVHVNINNP--NPVVLTEANI-----------EHYNVYGSLIFYQRGGD---NP----------------ALCVVK 252 (302)
T ss_dssp --TEEEEECSSSC--CCEECSCSCE-----------EEEEEETTEEEEEECSS---SC----------------EEEEEE
T ss_pred --cEEEEEECCCC--CeEEEeCCCc-----------ceEEECCCEEEEEECCC---Cc----------------EEEEEE
Confidence 58999999994 5566653211 45788899998875321 22 344677
Q ss_pred cCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEe
Q 007338 402 INTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (607)
Q Consensus 402 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt 468 (607)
+++...++|.... . .++++.+++|+|+..... .++++.+.+...++|.
T Consensus 253 ~DG~~r~~l~~~~-------~---------~~i~i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 253 NDGTGFKELAKGE-------F---------CNINVTSQYVYFTDFVSN---KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp TTSCCCEEEEESC-------E---------EEEEECSSEEEEEETTTC---CEEEEESSSCCSCEEC
T ss_pred CCCCccEEeeCCc-------c---------ceEEEeCCEEEEEECCCC---eEEEEECCCCCceEec
Confidence 7665556664321 1 124567789988865433 3888887655555554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-09 Score=107.74 Aligned_cols=260 Identities=9% Similarity=-0.036 Sum_probs=143.6
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCcc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDIC 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~ 84 (607)
.|.+.++. +++.......... .. .+.|||||++|++... ....|+++|+++++. .........
T Consensus 21 ~v~~~d~~----~~~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~- 84 (331)
T 3u4y_A 21 RISFFSTD----TLEILNQITLGYD-FV-DTAITSDCSNVVVTSD---------FCQTLVQIETQLEPPKVVAIQEGQS- 84 (331)
T ss_dssp EEEEEETT----TCCEEEEEECCCC-EE-EEEECSSSCEEEEEES---------TTCEEEEEECSSSSCEEEEEEECSS-
T ss_pred eEEEEeCc----ccceeeeEEccCC-cc-eEEEcCCCCEEEEEeC---------CCCeEEEEECCCCceeEEecccCCC-
Confidence 56777775 6766555543332 45 8999999998776653 245999999999885 322222221
Q ss_pred ccccccc-eEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 85 LNAVFGS-FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 85 ~~~~~~~-~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
... +.|+||++.++.. ... + ....|++++
T Consensus 85 ----~~~~~~~s~dg~~l~~~-~~~---------------------~------------------------~~~~i~v~d 114 (331)
T 3u4y_A 85 ----SMADVDITPDDQFAVTV-TGL---------------------N------------------------HPFNMQSYS 114 (331)
T ss_dssp ----CCCCEEECTTSSEEEEC-CCS---------------------S------------------------SSCEEEEEE
T ss_pred ----CccceEECCCCCEEEEe-cCC---------------------C------------------------CcccEEEEE
Confidence 345 8999999877732 100 0 012667777
Q ss_pred C-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCcc-EEEEeCCC-CeeEEeccCCCCCCCCccccc
Q 007338 164 L-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQK-VQVWTTDG-KLVRELCDLPPAEDIPVCYNS 239 (607)
Q Consensus 164 ~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~-l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~ 239 (607)
+ +++.. .+........+.|||||++|+++.... .. +++|+++. +........ .+ .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~----~~-----~ 173 (331)
T 3u4y_A 115 FLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQE----FI-----S 173 (331)
T ss_dssp TTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEE----EE-----C
T ss_pred CCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCc----cc-----c
Confidence 7 45433 333333446899999999988775421 24 66666653 222111000 00 0
Q ss_pred ccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCC---ceeeeecCcccceeeEcCCCcEEEEE
Q 007338 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~l~~~~~~~~~~~ws~Dg~~l~~~ 316 (607)
....++.+.|+|||+. + |+... ....+.+++. .++.. ...+ ........++|+|||+.++..
T Consensus 174 ~~~~~~~~~~spdg~~-l-~v~~~----------~~~~v~v~d~--~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNF-A-FVANL----------IGNSIGILET--QNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp SSSSEEEEEECTTSSE-E-EEEET----------TTTEEEEEEC--SSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEE
T ss_pred CCCCccceEECCCCCE-E-EEEeC----------CCCeEEEEEC--CCCcccceeeec-cCCCCCceEEECCCCCEEEEE
Confidence 0123456899999983 2 22211 1234555553 33322 2222 233455678999999965443
Q ss_pred EeccccceEEEEEcCCCCCCCceEee--ecccc-ccccCCCCCCeeeCCCCCEEEEEee
Q 007338 317 TWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFE-NVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 317 ~~~~~~~~~l~~~dl~~~~~~~~~l~--~~~~~-~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.. ....|+++|+.++ +.+.+. ...+. ..-...+...+.|+|||+.+++...
T Consensus 239 ~~---~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 239 TE---STVDVFNFNQLSG--TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp CS---SEEEEEEEETTTT--EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred Ec---CCCEEEEEECCCC--ceeeecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence 21 2346889999873 332231 11100 0000000012689999999887764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-09 Score=105.65 Aligned_cols=268 Identities=11% Similarity=-0.003 Sum_probs=145.9
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCC-cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
..|++.++. +++......+.... ....+.|||||++|++... ....|+++|+++++..........
T Consensus 11 ~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTE----KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---------KSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETT----TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---------TTTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECC----CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---------CCCeEEEEECCCCCeEeeEEcCCc
Confidence 357788876 56554443333311 3788999999999877653 246899999999887543222210
Q ss_pred c-ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 84 C-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 84 ~-~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. .......+.|+||++.+++..... +. . . +. + .....+|+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~---------------------~~------~----~---~~--~-~~~~~~i~v~ 120 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPV---------------------RL------E----L---TH--F-EVQPTRVALY 120 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEE---------------------EE------C----S---SC--E-EECCCEEEEE
T ss_pred ccccccccceEECCCCCEEEEEeccc---------------------cc------c----c---cc--c-cccCceEEEE
Confidence 0 001145789999987766642100 00 0 0 00 0 0013578888
Q ss_pred eC-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++ +++.. .+........+.|||||++|++.. ..|+++|+.+++........
T Consensus 121 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~~~~------------ 173 (337)
T 1pby_B 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQ------------ 173 (337)
T ss_dssp ETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECST------------
T ss_pred ECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeeeecc------------
Confidence 88 55433 343333445788999999998872 16899999988765433211
Q ss_pred cCCCCcceeecCCCceEE-----------EEEeecCCCCccccCCCceEEeccCCCCCCCCceeee--ecCcccceeeEc
Q 007338 241 REGMRSISWRADKPSTLY-----------WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWC 307 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~--~~~~~~~~~~ws 307 (607)
.......|+|||+..++ |......+...........+++++. ..+ +...+. ........+.|+
T Consensus 174 -~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~~~-~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 174 -SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL--ETG-EMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp -TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET--TTC-CEEEEEEEECSSCEEEEEEC
T ss_pred -ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC--CCC-CceEeecCCCCCceeeEEEC
Confidence 11124578898874210 0000000000000001113555553 232 222221 112234568999
Q ss_pred CCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEE
Q 007338 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAK 370 (607)
Q Consensus 308 ~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~ 370 (607)
|||+.++... ..|+++|++++ +....+. ..+.. +.|+|||+.+++.
T Consensus 250 ~dg~~l~~~~------~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~~ 297 (337)
T 1pby_B 250 PAKTRAFGAY------NVLESFDLEKN--ASIKRVPLPHSYYS---------VNVSTDGSTVWLG 297 (337)
T ss_dssp TTSSEEEEEE------SEEEEEETTTT--EEEEEEECSSCCCE---------EEECTTSCEEEEE
T ss_pred CCCCEEEEeC------CeEEEEECCCC--cCcceecCCCceee---------EEECCCCCEEEEE
Confidence 9998765542 47999999873 3222221 11222 7899999987765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-09 Score=105.66 Aligned_cols=262 Identities=13% Similarity=0.093 Sum_probs=134.3
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC--CCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~--~g~~~~lt~~~~~ 83 (607)
.|++.++.. +++.+.+..+..........|||||++|++.... + ..|.++++. +++.+.+......
T Consensus 16 ~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------~--~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 16 QIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP-------E--FRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT-------T--TEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEECC---CCcEEEeeeEecCCCCceEEECCCCCEEEEeecC-------C--CeEEEEEecCCCCceeeccccccC
Confidence 356666541 4544444433334467889999999998777642 2 455555554 7776655322211
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
..+..+.|+|+++.++++... ...|.+++
T Consensus 84 ---~~~~~~~~s~dg~~l~~~~~~------------------------------------------------~~~i~~~d 112 (343)
T 1ri6_A 84 ---GSLTHISTDHQGQFVFVGSYN------------------------------------------------AGNVSVTR 112 (343)
T ss_dssp ---SCCSEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEE
T ss_pred ---CCCcEEEEcCCCCEEEEEecC------------------------------------------------CCeEEEEE
Confidence 125688999998876664210 01222223
Q ss_pred C-CCC---ee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEec--cCCCCCCCCc
Q 007338 164 L-DGT---AK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELC--DLPPAEDIPV 235 (607)
Q Consensus 164 ~-~g~---~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~--~~~~~~~~~~ 235 (607)
+ +|. .. .+........+.|||||++|++.... ...|++|++.+ ++...+. .....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~----- 175 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEVTTV----- 175 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEEECS-----
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCC------------CCEEEEEEecCCCceeeecccccccC-----
Confidence 2 221 11 12222345678999999999877522 13688899876 6554332 10000
Q ss_pred ccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee---cC------cccceeeE
Q 007338 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD------LRFRSVSW 306 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~---~~------~~~~~~~w 306 (607)
....++.+.|+|||+. ++.. .. . ...+.+++.....| +...+.. .. .....++|
T Consensus 176 ----~~~~~~~~~~~pdg~~-l~~~-~~--~--------~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 176 ----EGAGPRHMVFHPNEQY-AYCV-NE--L--------NSSVDVWELKDPHG-NIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp ----TTCCEEEEEECTTSSE-EEEE-ET--T--------TTEEEEEESSCTTS-CCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred ----CCCCcceEEECCCCCE-EEEE-eC--C--------CCEEEEEEecCCCC-cEEEEeeccccCccccccCCccceEE
Confidence 0122345889999983 2222 11 1 12344444311222 2221111 11 12235899
Q ss_pred cCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 307 s~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
+|||+.++... ... ..+.+++++...+..+.+....... .+. .+.|+|+|+.+++...
T Consensus 239 s~dg~~l~v~~-~~~--~~i~v~d~~~~~~~~~~~~~~~~~~---~~~--~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 239 TPDGRHLYACD-RTA--SLITVFSVSEDGSVLSKEGFQPTET---QPR--GFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp CTTSSEEEEEE-TTT--TEEEEEEECTTSCCEEEEEEEECSS---SCC--CEEECTTSSEEEEECT
T ss_pred CCCCCEEEEEe-cCC--CEEEEEEEcCCCCceEEeeeecCCC---ccc--eEEECCCCCEEEEecC
Confidence 99998765432 122 2455666552112333332111111 011 2889999998877653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-08 Score=104.54 Aligned_cols=266 Identities=9% Similarity=0.027 Sum_probs=155.6
Q ss_pred ceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc
Q 007338 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (607)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 140 (607)
...|+++|+++++..+....... +..+.|+||++.++.+..
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~---------------------------------- 51 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANA---------------------------------- 51 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEG----------------------------------
T ss_pred CCEEEEEECCCCeEEEEeecCCC-----cceEEECCCCCEEEEECC----------------------------------
Confidence 46899999999987655433321 568899999887665310
Q ss_pred cccCcccccceeeeccceEEEEeC-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
....|.++++ +++.. .+........++|||||++|++.... ...|++||+.+
T Consensus 52 --------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~------------~~~v~v~d~~~ 105 (391)
T 1l0q_A 52 --------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------------SSTLSVIDTTS 105 (391)
T ss_dssp --------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTT
T ss_pred --------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC------------CCEEEEEECCC
Confidence 0135666676 55433 33333456789999999999888532 23799999998
Q ss_pred CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC
Q 007338 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (607)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~ 298 (607)
++....... ...+..+.|+|||+. +++.. . ....+++++. ..+ +........
T Consensus 106 ~~~~~~~~~-------------~~~~~~~~~s~dg~~-l~~~~-~----------~~~~v~~~d~--~~~-~~~~~~~~~ 157 (391)
T 1l0q_A 106 NTVAGTVKT-------------GKSPLGLALSPDGKK-LYVTN-N----------GDKTVSVINT--VTK-AVINTVSVG 157 (391)
T ss_dssp TEEEEEEEC-------------SSSEEEEEECTTSSE-EEEEE-T----------TTTEEEEEET--TTT-EEEEEEECC
T ss_pred CeEEEEEeC-------------CCCcceEEECCCCCE-EEEEe-C----------CCCEEEEEEC--CCC-cEEEEEecC
Confidence 866554321 122346899999984 22221 1 1235666664 222 222222223
Q ss_pred cccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEeeeccC
Q 007338 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (607)
Q Consensus 299 ~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 376 (607)
.....+.|+|||..++..... ...|+++|+.++ .....+. ..+.. +.|+|+|+.+++......
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~---~~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~~~~~- 222 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTN--SVIDTVKVEAAPSG---------IAVNPEGTKAYVTNVDKY- 222 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT--EEEEEEECSSEEEE---------EEECTTSSEEEEEEECSS-
T ss_pred CCcceEEECCCCCEEEEEeCC---CCEEEEEECCCC--eEEEEEecCCCccc---------eEECCCCCEEEEEecCcC-
Confidence 345678999999876433211 236888899873 3222222 11222 789999998887764211
Q ss_pred cCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEE
Q 007338 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (607)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~ 456 (607)
... +..+|+.+++........ ..+.. ..+++|++.++++.+.. ..+++
T Consensus 223 -~~~----------------v~~~d~~~~~~~~~~~~~-----~~~~~-------~~~s~dg~~l~~s~~~d---~~v~v 270 (391)
T 1l0q_A 223 -FNT----------------VSMIDTGTNKITARIPVG-----PDPAG-------IAVTPDGKKVYVALSFX---NTVSV 270 (391)
T ss_dssp -CCE----------------EEEEETTTTEEEEEEECC-----SSEEE-------EEECTTSSEEEEEETTT---TEEEE
T ss_pred -CCc----------------EEEEECCCCeEEEEEecC-----CCccE-------EEEccCCCEEEEEcCCC---CEEEE
Confidence 111 224576666543332221 11111 35788988886665432 46888
Q ss_pred EecCCCceee
Q 007338 457 LSWPLKKSSQ 466 (607)
Q Consensus 457 ~~~~~~~~~~ 466 (607)
+++.+++...
T Consensus 271 ~d~~~~~~~~ 280 (391)
T 1l0q_A 271 IDTATNTITA 280 (391)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9988776544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-10 Score=126.30 Aligned_cols=281 Identities=9% Similarity=0.078 Sum_probs=153.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC---CCceeecccCCCcc--ccccccceEEecCCeEEEEEec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~---~g~~~~lt~~~~~~--~~~~~~~~~Wspd~~~l~~~~~ 106 (607)
..+.| +|||++++|.++... .....||+++.. +++.++|++..... ....+..+.||||++.+++...
T Consensus 110 ~~~~p--~pdG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~ 182 (741)
T 1yr2_A 110 RFGLP--QRRGASVFYSWNSGL-----MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQ 182 (741)
T ss_dssp EECCC--EEETTEEEEEEECSS-----CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEE
T ss_pred ccCCC--EEECCEEEEEEEcCC-----CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEc
Confidence 34455 499999999987521 225889999997 77777764321100 0012568999999887666421
Q ss_pred CCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-ceeeeeeCC
Q 007338 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSP 184 (607)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-~~~~~~~Sp 184 (607)
.. |. ...+|+++|+ +|+..+..... .+..++|||
T Consensus 183 ~~---------------------G~-----------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp 218 (741)
T 1yr2_A 183 DG---------------------GS-----------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLG 218 (741)
T ss_dssp ET---------------------TC-----------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEEST
T ss_pred CC---------------------CC-----------------------ceEEEEEEECCCCCCCCccCCCceeccEEEEC
Confidence 10 11 1247899999 66655442222 235789999
Q ss_pred CCceEEEEEccCCCcc-ccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEee
Q 007338 185 DQKYVLITSMHRPYSY-KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (607)
| +.|+|++...+... .......+.+||++++.++...
T Consensus 219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~----------------------------------------- 256 (741)
T 1yr2_A 219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA----------------------------------------- 256 (741)
T ss_dssp T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-----------------------------------------
T ss_pred C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-----------------------------------------
Confidence 9 99999975432100 0000011235777776544210
Q ss_pred cCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc-ccceEEEEEcCCCCCCC-ceEe
Q 007338 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWLVCPGSKDVA-PRVL 341 (607)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~~l~~~dl~~~~~~-~~~l 341 (607)
+.+.. . .. ........+.|||||+.|++..... .....||++|++++... .+.|
T Consensus 257 ------------~~lv~-~---~~--------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 257 ------------DQPVF-A---TP--------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ------------CEEEE-C---CT--------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred ------------CEEEe-c---cC--------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 00000 0 00 0111245688999999877665432 13568999999873224 5666
Q ss_pred eeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCC--CeeEEeecCCcccc
Q 007338 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG--SKERIWESNREKYF 419 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~ 419 (607)
....-.. + ..++++|+.+++.....+ .... |..++++++ +.+.++....
T Consensus 313 ~~~~~~~-~-------~~~~~dg~~l~~~s~~~~-~~~~----------------l~~~d~~~~~~~~~~l~~~~~---- 363 (741)
T 1yr2_A 313 IPDLKAQ-W-------DFVDGVGDQLWFVSGDGA-PLKK----------------IVRVDLSGSTPRFDTVVPESK---- 363 (741)
T ss_dssp ECSSSSC-E-------EEEEEETTEEEEEECTTC-TTCE----------------EEEEECSSSSCEEEEEECCCS----
T ss_pred cCCCCce-E-------EEEeccCCEEEEEECCCC-CCCE----------------EEEEeCCCCccccEEEecCCC----
Confidence 5321111 0 224588888888764321 1222 335676653 4455543321
Q ss_pred eeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEe
Q 007338 420 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (607)
Q Consensus 420 ~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt 468 (607)
..+. .++..++.++++...... ..|+++++.++..+.|+
T Consensus 364 ~~l~---------~~~~~~~~lv~~~~~dg~-~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 364 DNLE---------SVGIAGNRLFASYIHDAK-SQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp SEEE---------EEEEEBTEEEEEEEETTE-EEEEEEETTSCEEEECB
T ss_pred CeEE---------EEEEECCEEEEEEEECCE-EEEEEEeCCCCceeecc
Confidence 1111 123345778777765444 56999987555555554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-08 Score=101.81 Aligned_cols=254 Identities=11% Similarity=-0.015 Sum_probs=146.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|++.++. +++....... ......+.|||||+++++... ....|+++|+++++............
T Consensus 70 ~v~~~d~~----~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~~~ 134 (353)
T 3vgz_A 70 VVYRLDPV----TLEVTQAIHN--DLKPFGATINNTTQTLWFGNT---------VNSAVTAIDAKTGEVKGRLVLDDRKR 134 (353)
T ss_dssp EEEEECTT----TCCEEEEEEE--SSCCCSEEEETTTTEEEEEET---------TTTEEEEEETTTCCEEEEEESCCCCC
T ss_pred cEEEEcCC----CCeEEEEEec--CCCcceEEECCCCCEEEEEec---------CCCEEEEEeCCCCeeEEEEecCCCcc
Confidence 47777765 5655444322 235788999999998776653 23589999999998754433322100
Q ss_pred c-----ccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 86 N-----AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 86 ~-----~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
. .....+.|+||++.+++.... ....|+
T Consensus 135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------------------------------------~~~~i~ 167 (353)
T 3vgz_A 135 TEEVRPLQPRELVADDATNTVYISGIG-----------------------------------------------KESVIW 167 (353)
T ss_dssp CSSCCCCEEEEEEEETTTTEEEEEEES-----------------------------------------------SSCEEE
T ss_pred ccccCCCCCceEEECCCCCEEEEEecC-----------------------------------------------CCceEE
Confidence 0 002457899998776664100 124577
Q ss_pred EEeC-CCCee-ecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccc
Q 007338 161 LGSL-DGTAK-DFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (607)
Q Consensus 161 ~~~~-~g~~~-~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (607)
++|+ +++.. .+. .......+.|+|||++|++... ...|+++|+.+++..........
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~------- 227 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------------DGELITIDTADNKILSRKKLLDD------- 227 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------------TSEEEEEETTTTEEEEEEECCCS-------
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------------CCeEEEEECCCCeEEEEEEcCCC-------
Confidence 7777 55433 333 2233567899999999888742 13688999988866543321100
Q ss_pred ccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEE
Q 007338 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 238 ~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~ 317 (607)
+.......+.|+|||+. + |+... ....+++++. .++ +........ ....+.|+|||+.++...
T Consensus 228 -~~~~~~~~~~~s~dg~~-l-~~~~~----------~~~~v~~~d~--~~~-~~~~~~~~~-~~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 228 -GKEHFFINISLDTARQR-A-FITDS----------KAAEVLVVDT--RNG-NILAKVAAP-ESLAVLFNPARNEAYVTH 290 (353)
T ss_dssp -SSCCCEEEEEEETTTTE-E-EEEES----------SSSEEEEEET--TTC-CEEEEEECS-SCCCEEEETTTTEEEEEE
T ss_pred -CCCcccceEEECCCCCE-E-EEEeC----------CCCEEEEEEC--CCC-cEEEEEEcC-CCceEEECCCCCEEEEEE
Confidence 00011224899999983 3 33221 1235666663 333 222211222 224689999998644432
Q ss_pred eccccceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 318 WYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 318 ~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
. ....|+++|+.++ +....+. ..... +.|++||+.+++...
T Consensus 291 ~---~~~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 291 R---QAGKVSVIDAKSY--KVVKTFDTPTHPNS---------LALSADGKTLYVSVK 333 (353)
T ss_dssp T---TTTEEEEEETTTT--EEEEEEECCSEEEE---------EEECTTSCEEEEEEE
T ss_pred C---CCCeEEEEECCCC--eEEEEEecCCCCCe---------EEEcCCCCEEEEEEc
Confidence 2 1247889998873 3222221 12222 789999998877654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-08 Score=101.79 Aligned_cols=267 Identities=9% Similarity=0.008 Sum_probs=151.5
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC-ccccccccceEEec
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-ICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~-~~~~~~~~~~~Wsp 96 (607)
++..+.+..++.........||| ++.+++.... ...|+++|+++++..+...... ......+..+.|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 110 GITHRFISRFKTGFQPKSVRFID-NTRLAIPLLE---------DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp TCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTT---------SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred CCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCC---------CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC
Confidence 34444444344343567899999 5666666532 3569999999998766432110 00011245788988
Q ss_pred CCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eecCC-
Q 007338 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT- 173 (607)
Q Consensus 97 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~lt~- 173 (607)
++++++.... ...|.++++ +++. ..+..
T Consensus 180 ~~~~~~s~~~-------------------------------------------------d~~v~~~d~~~~~~~~~~~~~ 210 (433)
T 3bws_A 180 HNELWVSQMQ-------------------------------------------------ANAVHVFDLKTLAYKATVDLT 210 (433)
T ss_dssp GTEEEEEEGG-------------------------------------------------GTEEEEEETTTCCEEEEEECS
T ss_pred CCEEEEEECC-------------------------------------------------CCEEEEEECCCceEEEEEcCC
Confidence 8888776310 134555666 4432 23322
Q ss_pred CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCC
Q 007338 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (607)
Q Consensus 174 ~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (607)
......++|+|||++++++... ...|++||+.+++......
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~------------~~~i~~~d~~~~~~~~~~~--------------------------- 251 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWI------------SEDISVIDRKTKLEIRKTD--------------------------- 251 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETT------------TTEEEEEETTTTEEEEECC---------------------------
T ss_pred CCCeeEEEEcCCCCEEEEEecC------------CCcEEEEECCCCcEEEEec---------------------------
Confidence 2345689999999999877532 2378999988764322110
Q ss_pred CceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc----cceEEEEE
Q 007338 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTRTWLV 329 (607)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~----~~~~l~~~ 329 (607)
.......+.|+|||..++....... ....|+++
T Consensus 252 -------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~ 288 (433)
T 3bws_A 252 -------------------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIY 288 (433)
T ss_dssp -------------------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEE
T ss_pred -------------------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEE
Confidence 0011345778888876554432211 13478889
Q ss_pred cCCCCCCCceEee--eccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCe
Q 007338 330 CPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 407 (607)
Q Consensus 330 dl~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~ 407 (607)
|+.++ +..... ...+.. +.|+|+|+.+++....+ + . +..+++++++.
T Consensus 289 d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~~~~---~-~----------------v~v~d~~~~~~ 337 (433)
T 3bws_A 289 SMDKE--KLIDTIGPPGNKRH---------IVSGNTENKIYVSDMCC---S-K----------------IEVYDLKEKKV 337 (433)
T ss_dssp ETTTT--EEEEEEEEEECEEE---------EEECSSTTEEEEEETTT---T-E----------------EEEEETTTTEE
T ss_pred ECCCC--cEEeeccCCCCcce---------EEECCCCCEEEEEecCC---C-E----------------EEEEECCCCcE
Confidence 98873 322222 222222 78999998887765321 1 1 22356666654
Q ss_pred eEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeeccccc-----------ceEEEEecCCCceeeEe
Q 007338 408 ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI-----------TQYHILSWPLKKSSQIT 468 (607)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p-----------~~l~~~~~~~~~~~~Lt 468 (607)
....... ..+.. ..++++++.+++.....+.+ ..++++++.+++.....
T Consensus 338 ~~~~~~~-----~~~~~-------~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 338 QKSIPVF-----DKPNT-------IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EEEEECS-----SSEEE-------EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EEEecCC-----CCCCe-------EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 4333211 11222 35788988776655443332 47999998777655443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-09 Score=105.29 Aligned_cols=270 Identities=10% Similarity=0.067 Sum_probs=160.5
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
..-.+++||++|+|+... +...||.++.++.++++|+.. ..-.+++++..|+++......
T Consensus 17 n~g~~~~~g~~iy~~n~~--------d~~~ly~~~~dg~~~~~l~~~---------~~~~i~~~g~~Iyy~~~~~~~--- 76 (302)
T 3s25_A 17 NAGLFCESDGEVFFSNTN--------DNGRLYAMNIDGSNIHKLSND---------TAMYINADKNYVYYVRNNNQK--- 76 (302)
T ss_dssp GTTCEEEETTEEEEEEGG--------GTTEEEEEETTSCSCEEEEEE---------EEEEEEECSSEEEEEEECC-----
T ss_pred cceEEEEeCCEEEEEeCC--------CCceEEEEcCCCCCCEEccCC---------ceeeEEEcCCEEEEEECCCCc---
Confidence 344578999999998753 347899999999999999632 123456887766665321100
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCceEEEE
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLIT 192 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~i~~~ 192 (607)
. . .. . .+ ......|++++++| +.++|+... ...|+++|++|+|+
T Consensus 77 ---------~----~-~~--------~---------~~-~~n~~~Iy~i~~dg~~~~~l~~~~---~~~~s~~g~~Iy~~ 121 (302)
T 3s25_A 77 ---------I----T-SQ--------T---------FF-SYDRNSLCRIKRNGHGSTVLDPDP---CIYASLIGNYIYYL 121 (302)
T ss_dssp --------------------------C---------CS-SCCSEEEEEEETTSCCCEEEECSC---EEEEEEETTEEEEE
T ss_pred ---------c----c-cc--------c---------ee-ccCCCeEEEEeCCCCcceEeecCC---ccEEEEeCCEEEEE
Confidence 0 0 00 0 00 01246899999966 666676433 23688899999998
Q ss_pred EccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCcccc
Q 007338 193 SMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEV 272 (607)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~ 272 (607)
...... ...||++++++...++|+..
T Consensus 122 ~~~~~~---------~~~Iy~~~~dGs~~~~lt~~--------------------------------------------- 147 (302)
T 3s25_A 122 HYDTQT---------ATSLYRIRIDGEEKKKIKNH--------------------------------------------- 147 (302)
T ss_dssp EESSSS---------CEEEEEEETTSCCCEEEESS---------------------------------------------
T ss_pred eecCCC---------CceEEEEECCCCCeEEEeCC---------------------------------------------
Confidence 621100 24799999998766665430
Q ss_pred CCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccC
Q 007338 273 SPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSD 352 (607)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~ 352 (607)
.. +.|+++|+.|++... +...||+++++++ ..+.|+......
T Consensus 148 -------------------------~~----~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~--~~~~l~~~~~~~---- 189 (302)
T 3s25_A 148 -------------------------YL----FTCNTSDRYFYYNNP---KNGQLYRYDTASQ--SEALFYDCNCYK---- 189 (302)
T ss_dssp -------------------------CC----CCSEEETTEEEEECT---TTCCEEEEETTTT--EEEEEECSCEEE----
T ss_pred -------------------------Cc----eEeeEECCEEEEEeC---CCceEEEEECCCC--CEEEEeCCCccc----
Confidence 00 223456666655432 3457999999883 445555321111
Q ss_pred CCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcc
Q 007338 353 PGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEE 432 (607)
Q Consensus 353 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (607)
+ +.|+|+.|++..... +. .|.+++++++..++|+... + .
T Consensus 190 -----~-~~P~g~~iy~t~~~~---~~----------------~I~~~~ldG~~~~~Lt~~~-------~---------~ 228 (302)
T 3s25_A 190 -----P-VVLDDTNVYYMDVNR---DN----------------AIVHVNINNPNPVVLTEAN-------I---------E 228 (302)
T ss_dssp -----E-EEEETTEEEEEEGGG---TT----------------EEEEECSSSCCCEECSCSC-------E---------E
T ss_pred -----e-eeecCCEEEEEEcCC---Cc----------------EEEEEECCCCCeEEEeCCC-------c---------c
Confidence 3 348899998876431 12 3446788777766664221 1 1
Q ss_pred cccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEE
Q 007338 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLT 496 (607)
Q Consensus 433 ~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~ 496 (607)
.++|++++|+++.... . ..|+++++++...++|+... ... -.+....|-|+......|.
T Consensus 229 ~~~~~g~~Iy~~~~~~-~-~~i~~~~~DG~~r~~l~~~~--~~~-i~i~~d~Iy~td~~~~~i~ 287 (302)
T 3s25_A 229 HYNVYGSLIFYQRGGD-N-PALCVVKNDGTGFKELAKGE--FCN-INVTSQYVYFTDFVSNKEY 287 (302)
T ss_dssp EEEEETTEEEEEECSS-S-CEEEEEETTSCCCEEEEESC--EEE-EEECSSEEEEEETTTCCEE
T ss_pred eEEECCCEEEEEECCC-C-cEEEEEECCCCccEEeeCCc--cce-EEEeCCEEEEEECCCCeEE
Confidence 3678889987764332 2 67999999877777787542 111 1124456666654322344
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-08 Score=99.44 Aligned_cols=299 Identities=11% Similarity=0.017 Sum_probs=144.7
Q ss_pred CceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCcccccccccc
Q 007338 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (607)
Q Consensus 60 ~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 139 (607)
..-.+|.+|.++|+..+++..... .....+.|+||++ ++.+... +
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~-l~~~~~~----------------------~--------- 60 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDC-LYSVDKE----------------------D--------- 60 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCE-EEEEEEE----------------------T---------
T ss_pred CCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCe-EEEEEec----------------------C---------
Confidence 456688888888987665322111 1245789999999 5543110 0
Q ss_pred ccccCcccccceeeeccceEEEEeC-CCCeeecCC----CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEE
Q 007338 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (607)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~----~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (607)
....|+++++ +|+.+.+.. ......++|||||++|++.... ...+.+|
T Consensus 61 ---------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~------------~~~v~v~ 113 (347)
T 3hfq_A 61 ---------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH------------KGTAEVM 113 (347)
T ss_dssp ---------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred ---------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC------------CCEEEEE
Confidence 0135566666 455444322 2234578999999999888632 1357778
Q ss_pred eCC-CCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCcee
Q 007338 215 TTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (607)
Q Consensus 215 d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 293 (607)
++. ++..+.+........-|. .......+..+.|+|||+ ++ +.... .+.+.+++. ..+| +...
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~--l~-v~~~~----------~~~v~~~~~-~~~g-~~~~ 177 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR--LA-VIDLG----------SDKVYVYNV-SDAG-QLSE 177 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC--EE-EEETT----------TTEEEEEEE-CTTS-CEEE
T ss_pred EeCCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCc--EE-EEeCC----------CCEEEEEEE-CCCC-cEEE
Confidence 874 455555433211100000 000001123489999998 33 32211 124445443 1122 2222
Q ss_pred eee----cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeecc-ccccccC-CCCCCeeeCCCCCEE
Q 007338 294 LHK----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSD-PGSPMMTRTSTGTNV 367 (607)
Q Consensus 294 l~~----~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~-~~~~~~~-~~~~~~~~~~dg~~~ 367 (607)
+.. .......++|+|||+.++.... ..+.-.+|.++..+ ++.+.+.... ....+.. .....+.|+|||+.+
T Consensus 178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~-~~~~v~v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGE-LSSQIASLKYDTQT--GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEET-TTTEEEEEEEETTT--TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred eeeEEcCCCCCCceEEECCCCCEEEEEeC-CCCEEEEEEecCCC--CceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 211 1113345899999986544321 22333455555433 2333321100 0000000 000127799999988
Q ss_pred EEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecC-CCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEee
Q 007338 368 IAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKE 446 (607)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~s 446 (607)
++.....+ ...+ ++++ .|+.+.+...... -..+. ...|+||++++++...
T Consensus 255 ~v~~~~~~--~v~v------------------~~~~~~g~~~~~~~~~~~--~~~~~-------~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 255 YVSNRGYN--TLAV------------------FAVTADGHLTLIQQISTE--GDFPR-------DFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEETTT--EEEE------------------EEECGGGCEEEEEEEECS--SSCCC-------EEEECTTSSEEEEEET
T ss_pred EEEeCCCC--EEEE------------------EEECCCCcEEEeEEEecC--CCCcC-------eEEECCCCCEEEEEEc
Confidence 77654211 2223 2332 2333333111100 00111 1358899987765544
Q ss_pred cccccceEEEEecCCCceeeEec
Q 007338 447 SKTEITQYHILSWPLKKSSQITN 469 (607)
Q Consensus 447 s~~~p~~l~~~~~~~~~~~~Lt~ 469 (607)
. ..--.+|.++..+++++.+..
T Consensus 306 ~-~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 306 N-TDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp T-TTEEEEEEECTTTCCEEEEEE
T ss_pred C-CCcEEEEEEeCCCCeEEeccc
Confidence 3 333446666877888877654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-08 Score=97.87 Aligned_cols=202 Identities=8% Similarity=0.024 Sum_probs=110.2
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
..+..++|+||+++|+....+ ..|.+|++.+++...+.... ........+.|+|+++
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d-------------~~i~~~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEA-------------STLSIWDLAAPTPRIKAELT----------SSAPACYALAISPDSK 154 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESS-------------SEEEEEECCCC--EEEEEEE----------CSSSCEEEEEECTTSS
T ss_pred CcEEEEEEcCCCCEEEEEcCC-------------CcEEEEECCCCCcceeeecc----------cCCCceEEEEECCCCC
Confidence 356789999999999887532 37889999877633322110 0011223589999987
Q ss_pred ceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCC
Q 007338 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
. ++ .... ...+.+++. ..+.....+......+..+.|+|++..|+.... ...+.++|+.+.
T Consensus 155 ~-l~-~~~~-----------dg~v~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~ 215 (337)
T 1gxr_A 155 V-CF-SCCS-----------DGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREG 215 (337)
T ss_dssp E-EE-EEET-----------TSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTT
T ss_pred E-EE-EEeC-----------CCcEEEEeC--CCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCC
Confidence 3 22 2111 123555553 222112233334456778999999987776542 136778888773
Q ss_pred CCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEee
Q 007338 335 DVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (607)
Q Consensus 335 ~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (607)
+....+. ..+.. +.|+|+|+.++....+ .... .+++.+++...+..
T Consensus 216 --~~~~~~~~~~~v~~---------~~~s~~~~~l~~~~~~---~~i~------------------~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 216 --RQLQQHDFTSQIFS---------LGYCPTGEWLAVGMES---SNVE------------------VLHVNKPDKYQLHL 263 (337)
T ss_dssp --EEEEEEECSSCEEE---------EEECTTSSEEEEEETT---SCEE------------------EEETTSSCEEEECC
T ss_pred --ceEeeecCCCceEE---------EEECCCCCEEEEEcCC---CcEE------------------EEECCCCCeEEEcC
Confidence 2222221 12222 7899999987765432 1222 24555554433311
Q ss_pred cCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceee
Q 007338 413 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (607)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~ 466 (607)
. ...+.. ..|+++++.++... . -..+++.++.+++...
T Consensus 264 ~-----~~~v~~-------~~~~~~~~~l~~~~-~---dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 264 H-----ESCVLS-------LKFAYCGKWFVSTG-K---DNLLNAWRTPYGASIF 301 (337)
T ss_dssp C-----SSCEEE-------EEECTTSSEEEEEE-T---TSEEEEEETTTCCEEE
T ss_pred C-----ccceeE-------EEECCCCCEEEEec-C---CCcEEEEECCCCeEEE
Confidence 1 112222 35788888665333 2 2468888887766543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-08 Score=113.17 Aligned_cols=273 Identities=8% Similarity=0.074 Sum_probs=151.2
Q ss_pred EEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC---CccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP---DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~---~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
..+++|.+++|..+... ....-+|+.+..+++ +.|.+.. .+. ...+..+.||||+++++++...
T Consensus 83 ~p~~~g~~~y~~~~~~~-----~~~~~~~r~~~~~~~-~vllD~n~la~~~-~~~l~~~~~SpDg~~lAy~~~~------ 149 (693)
T 3iuj_A 83 APFREGRYHYFFKNDGL-----QNQNVLWRQQEGKPA-EVFLDPNTLSPDG-TTALDQLSFSRDGRILAYSLSL------ 149 (693)
T ss_dssp CCEEETTEEEEEEECSS-----CSSCEEEEECTTSCC-EEEECGGGGSTTS-CCEEEEEEECTTSSEEEEEEEC------
T ss_pred CCEEECCEEEEEEEcCC-----CceeEEEEeCCCCCc-EEEEehhhccCCC-cEEEEEEEECCCCCEEEEEEec------
Confidence 33578999999876421 223456775544333 3343221 111 1124578999998876664321
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCCc-eeeeeeCCCCceEEE
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV-YTAVEPSPDQKYVLI 191 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~~-~~~~~~SpDg~~i~~ 191 (607)
.|. ....|+++|+ +|+..+.+.... ...++|| ||+.|+|
T Consensus 150 ---------------~G~-----------------------~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 150 ---------------AGS-----------------------DWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFY 190 (693)
T ss_dssp ---------------SSC-----------------------CEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEE
T ss_pred ---------------CCC-----------------------ceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEE
Confidence 011 1257899999 677655432222 3578999 9999999
Q ss_pred EEccCCCccccCCCcCCccEEEEeCCCCee--EEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
++...+..........+.+||++++.++.. ..|..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~------------------------------------------- 227 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG------------------------------------------- 227 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEES-------------------------------------------
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEe-------------------------------------------
Confidence 986532000000001134677777655421 11100
Q ss_pred cccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccc
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN 348 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~ 348 (607)
... .......+.|||||+.|++..........||++|+++++...+.|....-..
T Consensus 228 ------------------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 228 ------------------------AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp ------------------------CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred ------------------------cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 001 1112346789999998776654333345899999988544566665322111
Q ss_pred cccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCe---eEEeecCCcccceeeeee
Q 007338 349 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK---ERIWESNREKYFETAVAL 425 (607)
Q Consensus 349 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~~~~~ 425 (607)
+ ..|+++|+.++|.....+ .... |..+++++++. +.++..... .
T Consensus 284 -~-------~~~~~~g~~l~~~t~~~~-~~~~----------------l~~~d~~~~~~~~~~~l~~~~~~----~---- 330 (693)
T 3iuj_A 284 -V-------SLVDNKGSTLYLLTNRDA-PNRR----------------LVTVDAANPGPAHWRDLIPERQQ----V---- 330 (693)
T ss_dssp -E-------EEEEEETTEEEEEECTTC-TTCE----------------EEEEETTSCCGGGCEEEECCCSS----C----
T ss_pred -E-------EEEeccCCEEEEEECCCC-CCCE----------------EEEEeCCCCCccccEEEecCCCC----E----
Confidence 0 226778888887765321 1222 34567766543 444432211 1
Q ss_pred ecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEe
Q 007338 426 VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (607)
Q Consensus 426 ~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt 468 (607)
. +++++++.+++....... +.|+++++.++..+.|+
T Consensus 331 -----~-~~s~~g~~lv~~~~~~g~-~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 331 -----L-TVHSGSGYLFAEYMVDAT-ARVEQFDYEGKRVREVA 366 (693)
T ss_dssp -----E-EEEEETTEEEEEEEETTE-EEEEEECTTSCEEEEEC
T ss_pred -----E-EEEEECCEEEEEEEECCe-eEEEEEECCCCeeEEee
Confidence 1 367888888887766444 46999998776666654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-07 Score=93.98 Aligned_cols=305 Identities=10% Similarity=0.052 Sum_probs=158.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|||||+.|+.... ...|.++|+.+++.......... .+..+.|+|++++++....
T Consensus 34 ~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~~----- 94 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSK----------DSSASVWYSLNGERLGTLDGHTG----TIWSIDVDCFTKYCVTGSA----- 94 (369)
T ss_dssp CEEEEEECTTSCEEEEEES----------SSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEET-----
T ss_pred eEEEEEEcCCCCEEEEEeC----------CCEEEEEeCCCchhhhhhhhcCC----cEEEEEEcCCCCEEEEEeC-----
Confidence 5899999999998877653 25788889998876544322222 2678999999887776421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eecCCCCceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~lt~~~~~~~~~~SpDg~~i 189 (607)
...|.++++ +++. ..+.....+..+.|+|++++|
T Consensus 95 --------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 130 (369)
T 3zwl_B 95 --------------------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF 130 (369)
T ss_dssp --------------------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEE
T ss_pred --------------------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEE
Confidence 124455555 4432 233334456789999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCee-EEeccCCCCCCCCccccccc--CCCCcceeecCCCceEEEEEeecCC
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVR--EGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~--~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
+........ ....+.+|++..+.. ..+..... ... ..+.... .....+.|+|+++. ++ ...
T Consensus 131 ~~~~~~~~~--------~~g~i~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~---- 194 (369)
T 3zwl_B 131 LAILDNVMK--------NPGSINIYEIERDSATHELTKVSE-EPI-HKIITHEGLDAATVAGWSTKGKY-II-AGH---- 194 (369)
T ss_dssp EEEECCBTT--------BCCEEEEEEEEECTTTCCEEEECS-SCS-EEEECCTTCCCEEEEEECGGGCE-EE-EEE----
T ss_pred EEecCCccC--------CCCEEEEEEecCCccceeeccccc-cee-eeccCCcCccceeEEEEcCCCCE-EE-EEc----
Confidence 887643100 023677787754321 00100000 000 0000000 02335889999983 22 111
Q ss_pred CCccccCCCceEEeccCCCCC-CCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--
Q 007338 267 DANVEVSPRDIIYTQPAEPAE-GEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD-- 343 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~-- 343 (607)
....+.+++. .. +.....+......+..+.|+||+..|+.... + ..|.++|+.+. .....+.
T Consensus 195 -------~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--~~i~v~d~~~~--~~~~~~~~~ 259 (369)
T 3zwl_B 195 -------KDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR--D--TNSFLVDVSTL--QVLKKYETD 259 (369)
T ss_dssp -------TTSEEEEEET--TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET--T--SEEEEEETTTC--CEEEEEECS
T ss_pred -------CCCEEEEEEC--CCCcEeEEEEecCCCceeEEEECCCCCEEEEecC--C--ceEEEEECCCC--ceeeeecCC
Confidence 1124555553 11 1112233334456788999999988776542 1 36778888873 3222222
Q ss_pred ccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeee
Q 007338 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 423 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 423 (607)
..+.. +.|+|+++.++...... ...++.... ......+..++..+++........ ...+.
T Consensus 260 ~~~~~---------~~~~~~~~~l~~~~~~~---~~~~~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~----~~~v~ 319 (369)
T 3zwl_B 260 CPLNT---------AVITPLKEFIILGGGQE---AKDVTTTSA----NEGKFEARFYHKIFEEEIGRVQGH----FGPLN 319 (369)
T ss_dssp SCEEE---------EEECSSSSEEEEEECCC--------------------CEEEEEETTTCCEEEEEECC----SSCEE
T ss_pred CCcee---------EEecCCCceEEEeecCC---CceEEEEec----CCCcceeEEEecCCCcchhheecc----cCcEE
Confidence 11222 78999999887766431 222221110 011123444566555544332221 11222
Q ss_pred eeecCCCcccccccCCEEEEEeecccccceEEEEecCC
Q 007338 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (607)
Q Consensus 424 ~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~ 461 (607)
. ..|++++..++ +.+.. ..+.+.++..
T Consensus 320 ~-------~~~s~~~~~l~-s~~~d---g~v~iw~~~~ 346 (369)
T 3zwl_B 320 T-------VAISPQGTSYA-SGGED---GFIRLHHFEK 346 (369)
T ss_dssp E-------EEECTTSSEEE-EEETT---SEEEEEEECH
T ss_pred E-------EEECCCCCEEE-EEcCC---CeEEEEECcc
Confidence 2 35788887654 33332 3466666544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-08 Score=113.78 Aligned_cols=270 Identities=7% Similarity=-0.002 Sum_probs=149.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC---CCC--ceeecccCC---CccccccccceEEe-cCCeEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETG--EAKPLFESP---DICLNAVFGSFVWV-NNSTLLI 102 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g--~~~~lt~~~---~~~~~~~~~~~~Ws-pd~~~l~ 102 (607)
..+.|. ++|.+++|+++... .....|++.+. .++ +.+.+.+.. .+.-.-..+.+.|| ||++.++
T Consensus 118 ~~~~p~--~~g~~~yy~~~~~g-----~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lA 190 (751)
T 2xe4_A 118 DMSAPY--VYGKYRYYTREVKG-----KPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVA 190 (751)
T ss_dssp EECCCE--EETTEEEEEEECTT-----CCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEE
T ss_pred cCCCCe--EECCEEEEEEECCC-----CceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEE
Confidence 466676 79999999987421 22356888887 554 444443221 00000014578999 9988766
Q ss_pred EEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCCC--Ccee
Q 007338 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYT 178 (607)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~~--~~~~ 178 (607)
++... .|. ...+||++++ +| +. +... ....
T Consensus 191 y~~~~---------------------~G~-----------------------~~~~l~v~dl~~g~~~--l~~~~~~~~~ 224 (751)
T 2xe4_A 191 FSVDM---------------------SGN-----------------------EVYTIEFKRISDPSQT--IADKVSGTNG 224 (751)
T ss_dssp EEEES---------------------SSS-----------------------SCEEEEEEETTCTTCC--CCCCEEEECS
T ss_pred EEEeC---------------------CCC-----------------------ceEEEEEEECCCCCEe--CCccccCcee
Confidence 65311 011 1247999999 56 42 2211 1234
Q ss_pred eeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEE
Q 007338 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (607)
.+.|||||+.|+|+..+... .+..||++++.++.... .++
T Consensus 225 ~~~WspDg~~l~y~~~d~~~--------~~~~v~~~~lgt~~~~~--------------------------------~lv 264 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETL--------RENKVWRHVMGKLQSED--------------------------------VCL 264 (751)
T ss_dssp CCEECSSTTEEEEEEECTTC--------CEEEEEEEETTSCGGGC--------------------------------EEE
T ss_pred eEEEecCCCEEEEEEECCCC--------CCCEEEEEECCCCchhc--------------------------------EEE
Confidence 78999999999999753210 12478888886652110 000
Q ss_pred EEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCc
Q 007338 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (607)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~ 338 (607)
+- . ........+.|||||+.|++..+.. ....||++|++++....
T Consensus 265 ~~-----------------------------~-----~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 265 YE-----------------------------E-----HNPLFSAFMYKAADTNTLCIGSQSP-ETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp EE-----------------------------C-----CCTTCEEEEEECTTSSEEEEEEECS-SCEEEEEEESSSCTTCC
T ss_pred Ee-----------------------------c-----CCCceEEEEEECCCCCEEEEEecCC-CCceEEEEECCCCCCCc
Confidence 00 0 0011124578999999877765432 45799999998853345
Q ss_pred --eEeeeccccccccCCCCCCeeeCCC---CCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCC-CCeeE-Ee
Q 007338 339 --RVLFDRVFENVYSDPGSPMMTRTST---GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT-GSKER-IW 411 (607)
Q Consensus 339 --~~l~~~~~~~~~~~~~~~~~~~~~d---g~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~-g~~~~-l~ 411 (607)
+.++.... . ..|+++ |+.+++.....+.... .|+.+++++ ++.+. +.
T Consensus 310 ~~~~l~~~~~-~---------~~~s~~~~~g~~l~~~t~~~~a~~~----------------~L~~~d~~~~~~~~~~li 363 (751)
T 2xe4_A 310 TLEIVRPREK-G---------VRYDVQMHGTSHLVILTNEGGAVNH----------------KLLIAPRGQPSDWSHVLV 363 (751)
T ss_dssp CEEESSCCCT-T---------CCEEEEEETTTEEEEEECTTTCTTC----------------EEEEEETTSTTCCCCEEE
T ss_pred eeEEeecCCC-C---------ceEEEeeeeCCEEEEEeCCCCCCCc----------------EEEEEcCCCcccceeeEE
Confidence 55543221 1 344444 7777777653201122 344567654 34444 43
Q ss_pred ecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEec-------CCCc-eeeEe
Q 007338 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW-------PLKK-SSQIT 468 (607)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~-------~~~~-~~~Lt 468 (607)
....+ . .+ ..++++++.++++.... ....|+++++ .+++ .++|+
T Consensus 364 ~~~~~--~-~l---------~~~~~~~~~lv~~~~~~-g~~~l~~~dl~~~~~~~~~g~~~~~l~ 415 (751)
T 2xe4_A 364 DHSED--V-FM---------ESIAVRSNYLVVAGRRA-GLTRIWTMMADSQDGVFKAGTGLREVV 415 (751)
T ss_dssp CCCSS--E-EE---------EEEEECSSEEEEEEEET-TEEEEEEEECCTTTSCCCTTTCCEECC
T ss_pred CCCCC--c-EE---------EEEEEECCEEEEEEEeC-CEEEEEEEecccccccccCCccceEEC
Confidence 33211 0 11 12445667887777553 4457999986 4555 56653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-07 Score=92.52 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=132.3
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
...+....|+|||+.|+.... ...|.++|+.+++...+..... ....+..+.|+|++++++....
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~--- 161 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGE----------ASTLSIWDLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCS--- 161 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEES----------SSEEEEEECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEET---
T ss_pred CCcEEEEEEcCCCCEEEEEcC----------CCcEEEEECCCCCcceeeeccc--CCCceEEEEECCCCCEEEEEeC---
Confidence 336889999999999887653 3578899999887322211111 0112567899999887776421
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCC
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQ 186 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg 186 (607)
...+.++++ +++ ...+.. ...+..+.|+||+
T Consensus 162 ----------------------------------------------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 162 ----------------------------------------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp ----------------------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ----------------------------------------------CCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence 123444555 333 223332 2356789999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
++|+....+ ..|++||+.+++....... ......+.|+|+++. ++ +..
T Consensus 196 ~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~-l~-~~~---- 243 (337)
T 1gxr_A 196 TKLWTGGLD-------------NTVRSWDLREGRQLQQHDF-------------TSQIFSLGYCPTGEW-LA-VGM---- 243 (337)
T ss_dssp SEEEEEETT-------------SEEEEEETTTTEEEEEEEC-------------SSCEEEEEECTTSSE-EE-EEE----
T ss_pred CEEEEEecC-------------CcEEEEECCCCceEeeecC-------------CCceEEEEECCCCCE-EE-EEc----
Confidence 998877532 3789999987765443221 112345899999983 22 211
Q ss_pred CCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--c
Q 007338 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--R 344 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~ 344 (607)
....+.+++. ..+ +...+......+..+.|+||+..|+.... + ..|.++|+.++ +...... .
T Consensus 244 -------~~~~i~~~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--g~i~~~~~~~~--~~~~~~~~~~ 307 (337)
T 1gxr_A 244 -------ESSNVEVLHV--NKP-DKYQLHLHESCVLSLKFAYCGKWFVSTGK--D--NLLNAWRTPYG--ASIFQSKESS 307 (337)
T ss_dssp -------TTSCEEEEET--TSS-CEEEECCCSSCEEEEEECTTSSEEEEEET--T--SEEEEEETTTC--CEEEEEECSS
T ss_pred -------CCCcEEEEEC--CCC-CeEEEcCCccceeEEEECCCCCEEEEecC--C--CcEEEEECCCC--eEEEEecCCC
Confidence 1123455553 122 33334444556788999999998776542 2 35777788773 2222221 1
Q ss_pred cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 345 VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.+.. +.|+|+++.++...
T Consensus 308 ~v~~---------~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 308 SVLS---------CDISVDDKYIVTGS 325 (337)
T ss_dssp CEEE---------EEECTTSCEEEEEE
T ss_pred cEEE---------EEECCCCCEEEEec
Confidence 2222 78999999776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-07 Score=95.39 Aligned_cols=275 Identities=12% Similarity=0.078 Sum_probs=145.9
Q ss_pred ceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc
Q 007338 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (607)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 140 (607)
...|+++|+++++..+........ .....+.|+||++.++++..
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~---------------------------------- 53 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVN---------------------------------- 53 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEET----------------------------------
T ss_pred CCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCCCCEEEEEeC----------------------------------
Confidence 468999999998875544332200 01467899999876665421
Q ss_pred cccCcccccceeeeccceEEEEeC-CCCee-ecCCCC------ceeeeeeCCCCceEEEEEccC---CCccccCCCcCCc
Q 007338 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVLITSMHR---PYSYKVPCARFSQ 209 (607)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~------~~~~~~~SpDg~~i~~~~~~~---~~~~~~~~~~~~~ 209 (607)
....|+++++ +++.. .+.... ....+.|||||++|++..... +..+.. ...
T Consensus 54 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~----~~~ 115 (337)
T 1pby_B 54 --------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV----QPT 115 (337)
T ss_dssp --------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE----CCC
T ss_pred --------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc----cCc
Confidence 0135666676 45432 232221 334789999999998885221 000000 024
Q ss_pred cEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCC
Q 007338 210 KVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (607)
Q Consensus 210 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 289 (607)
.|+++|+++++....... ...+..+.|+|||+. ++.. . ..+++++. .++
T Consensus 116 ~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~-l~~~----~----------~~i~~~d~--~~~- 164 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-------------PRQITMLAWARDGSK-LYGL----G----------RDLHVMDP--EAG- 164 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-------------CSSCCCEEECTTSSC-EEEE----S----------SSEEEEET--TTT-
T ss_pred eEEEEECCCCcEEEEEeC-------------CCCcceeEECCCCCE-EEEe----C----------CeEEEEEC--CCC-
Confidence 799999988765543221 123456899999984 3222 1 23555553 222
Q ss_pred CceeeeecCcccceeeEcCCCcEEEEEEecc--------------------ccceEEEEEcCCCCCCCceEeeecccccc
Q 007338 290 KPEILHKLDLRFRSVSWCDDSLALVNETWYK--------------------TSQTRTWLVCPGSKDVAPRVLFDRVFENV 349 (607)
Q Consensus 290 ~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~--------------------~~~~~l~~~dl~~~~~~~~~l~~~~~~~~ 349 (607)
+...............|+|||..++...... .....|+++|+.++ +...+.-......
T Consensus 165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~ 242 (337)
T 1pby_B 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG--EMAMREVRIMDVF 242 (337)
T ss_dssp EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--CEEEEEEEECSSC
T ss_pred cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC--CceEeecCCCCCc
Confidence 2211111111123458899887543211000 01126889999883 3332211000000
Q ss_pred ccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCC
Q 007338 350 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 429 (607)
Q Consensus 350 ~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 429 (607)
. ..+.|+|||+.+++.. +. +..+|+++++........ ..+.
T Consensus 243 ~-----~~~~~s~dg~~l~~~~------~~-----------------v~~~d~~~~~~~~~~~~~-----~~~~------ 283 (337)
T 1pby_B 243 Y-----FSTAVNPAKTRAFGAY------NV-----------------LESFDLEKNASIKRVPLP-----HSYY------ 283 (337)
T ss_dssp E-----EEEEECTTSSEEEEEE------SE-----------------EEEEETTTTEEEEEEECS-----SCCC------
T ss_pred e-----eeEEECCCCCEEEEeC------Ce-----------------EEEEECCCCcCcceecCC-----Ccee------
Confidence 0 0178999999887662 11 224577666544332211 0111
Q ss_pred CcccccccCCEEEEEeecccccceEEEEecCCCceee
Q 007338 430 GEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (607)
Q Consensus 430 ~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~ 466 (607)
...|++|++.+++. . ....++++++.+++...
T Consensus 284 -~~~~s~dg~~l~~~-~---~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 284 -SVNVSTDGSTVWLG-G---ALGDLAAYDAETLEKKG 315 (337)
T ss_dssp -EEEECTTSCEEEEE-S---BSSEEEEEETTTCCEEE
T ss_pred -eEEECCCCCEEEEE-c---CCCcEEEEECcCCcEEE
Confidence 13578898877664 2 23679999988776544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-08 Score=98.82 Aligned_cols=233 Identities=13% Similarity=0.171 Sum_probs=120.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|||||++||-.+..... --...|++++..+++...............+..+.|+|+++++.... +
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~----~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~-d---- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSR----TWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASD-S---- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSS----SCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEET-T----
T ss_pred CEEEEEECCCCCEEEEEcCCCCc----cccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEEC-C----
Confidence 57889999999998876531000 01357899998877643221100000111256889999998766431 0
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe------eecCCCCceeeeeeCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA------KDFGTPAVYTAVEPSP 184 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~------~~lt~~~~~~~~~~Sp 184 (607)
| .|.++|+ +++. ........+..++|||
T Consensus 115 ------------------g---------------------------~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 115 ------------------G---------------------------AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp ------------------S---------------------------CEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred ------------------C---------------------------EEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 1 1111222 1210 0111223567899999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
||++|+....+ ..|.+||+.+++....... -...+..+.|+|++...++-.. .
T Consensus 150 dg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~~------------h~~~v~~v~~s~~~~~~~~s~~--~ 202 (357)
T 4g56_B 150 DGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYNA------------HSSEVNCVAACPGKDTIFLSCG--E 202 (357)
T ss_dssp SSSEEEEEETT-------------SCEEEEETTTTEEEEEECC------------CSSCEEEEEECTTCSSCEEEEE--T
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcC------------CCCCEEEEEEccCCCceeeeec--c
Confidence 99998876532 3688999988765443210 0112335889998875433221 1
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeee--ecCcccceeeEcCCCc-EEEEEEeccccceEEEEEcCCCCCCCceEe
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~--~~~~~~~~~~ws~Dg~-~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l 341 (607)
...+.+++. ..+.....+. ........++|+|++. .|+.... + ..|.++|+.+++ ..+.+
T Consensus 203 ----------dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~--d--~~i~~wd~~~~~-~~~~~ 265 (357)
T 4g56_B 203 ----------DGRILLWDT--RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE--T--GNVSLVNIKNPD-SAQTS 265 (357)
T ss_dssp ----------TSCEEECCT--TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES--S--SCEEEEESSCGG-GCEEE
T ss_pred ----------CCceEEEEC--CCCceeeeeeeccccccccchhhhhcccceEEEeec--c--cceeEEECCCCc-EeEEE
Confidence 123555553 2221112221 1233466789999864 5554321 1 246677887732 22322
Q ss_pred e--eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 342 F--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 342 ~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. ...+.. +.|+|+++.+++..
T Consensus 266 ~~~~~~v~~---------l~~sp~~~~~lasg 288 (357)
T 4g56_B 266 AVHSQNITG---------LAYSYHSSPFLASI 288 (357)
T ss_dssp CCCSSCEEE---------EEECSSSSCCEEEE
T ss_pred eccceeEEE---------EEEcCCCCCEEEEE
Confidence 1 112332 78999986555443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-07 Score=98.79 Aligned_cols=256 Identities=8% Similarity=-0.013 Sum_probs=147.2
Q ss_pred eEEEeccCCCCCCCeeeeecC----CCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 7 IGIHRLLPDDSLGPEKEVHGY----PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~----~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
|++.++. +++..+.... .....+....|+|||+.++... ....|+++|+++++.........
T Consensus 146 i~~~d~~----~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 146 MDVLDIN----SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM----------QANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp EEEEETT----TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG----------GGTEEEEEETTTCCEEEEEECSS
T ss_pred EEEEECC----CCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC----------CCCEEEEEECCCceEEEEEcCCC
Confidence 7777776 6666554311 0111467789999997554332 23689999999887644332212
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. .+..+.|+|+++.++.+.. ....|+++
T Consensus 212 ~----~~~~~~~~~~~~~l~~~~~------------------------------------------------~~~~i~~~ 239 (433)
T 3bws_A 212 K----WSKILLYDPIRDLVYCSNW------------------------------------------------ISEDISVI 239 (433)
T ss_dssp S----SEEEEEEETTTTEEEEEET------------------------------------------------TTTEEEEE
T ss_pred C----CeeEEEEcCCCCEEEEEec------------------------------------------------CCCcEEEE
Confidence 1 2568899999887765420 01355666
Q ss_pred eC-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
|+ +++.. .+........+.|+|||++|++.......-. .....|++||+.+++.......
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-----~~dg~i~~~d~~~~~~~~~~~~------------- 301 (433)
T 3bws_A 240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE-----SGGGRLGIYSMDKEKLIDTIGP------------- 301 (433)
T ss_dssp ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC-----SCCEEEEEEETTTTEEEEEEEE-------------
T ss_pred ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc-----cCCCeEEEEECCCCcEEeeccC-------------
Confidence 66 45433 3333345678999999999988864321100 0024799999988765543210
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
...+..+.|+||++. ++.... ....+.+++. ..+ +.............++|+|||..++......
T Consensus 302 ~~~~~~~~~~~~g~~-l~~~~~-----------~~~~v~v~d~--~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 302 PGNKRHIVSGNTENK-IYVSDM-----------CCSKIEVYDL--KEK-KVQKSIPVFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp EECEEEEEECSSTTE-EEEEET-----------TTTEEEEEET--TTT-EEEEEEECSSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCcceEEECCCCCE-EEEEec-----------CCCEEEEEEC--CCC-cEEEEecCCCCCCeEEEcCCCCEEEEEecCC
Confidence 112345899999984 222211 1234566663 222 2222223344567899999998665543211
Q ss_pred cc-----------ceEEEEEcCCCCCCCceEeeec--cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 321 TS-----------QTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 321 ~~-----------~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.. ...|+++|+.++ +....+.. .+.. +.|+|||+.+++...
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAGNQPTG---------LDVSPDNRYLVISDF 420 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECSSSEEE---------EEECTTSCEEEEEET
T ss_pred CccccccccccccceEEEEEECCCC--cEEEEecCCCCCce---------EEEcCCCCEEEEEEC
Confidence 10 137999999873 33332321 1222 789999998876653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.1e-07 Score=97.34 Aligned_cols=219 Identities=14% Similarity=0.184 Sum_probs=130.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|||+.|+.... + ..|.++|+.+.....+..... .+..+.|+|++++++....+
T Consensus 305 ~v~~~~~~~~~~~l~t~~~--------d--~~i~~w~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~d---- 365 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASD--------D--KTVKLWNRNGQHLQTLTGHSS-----SVWGVAFSPDGQTIASASDD---- 365 (577)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTSCEEEEECCCSS-----CEEEEEECTTSSEEEEEETT----
T ss_pred CeEEEEECCCCCEEEEEeC--------C--CeEEEEeCCCCeeEEEeCCCC-----CEEEEEECCCCCEEEEEeCC----
Confidence 5778899999999877653 2 457777888777666653332 25678999998877764210
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCC-CCceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGT-PAVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~-~~~~~~~~~SpDg~~i 189 (607)
..+.+++.+++ ...+.. ...+..++|||||++|
T Consensus 366 ---------------------------------------------g~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 366 ---------------------------------------------KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp ---------------------------------------------SEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred ---------------------------------------------CEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 12222333332 222322 2345688999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
+....+ ..|.+|+..+...+.+... ...+..+.|+||++. |+.. . .
T Consensus 401 ~~~~~d-------------~~v~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~d~~~-l~~~--~--~--- 446 (577)
T 2ymu_A 401 ASASDD-------------KTVKLWNRNGQLLQTLTGH-------------SSSVWGVAFSPDDQT-IASA--S--D--- 446 (577)
T ss_dssp EEEETT-------------SEEEEECTTCCEEEEEECC-------------SSCEEEEEECTTSSE-EEEE--E--T---
T ss_pred EEEeCC-------------CEEEEEeCCCCEEEEecCC-------------CCCeEEEEECCCCCE-EEEE--c--C---
Confidence 877532 3688899877666655321 112235899999983 2211 1 1
Q ss_pred cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--cccc
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFE 347 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~ 347 (607)
...+.+++. ++.....+......+..++|+|||+.|+.... ++ .|.+.|.++ ...+.+.. ..+.
T Consensus 447 -----d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~--d~--~i~iw~~~~--~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 447 -----DKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD--DK--TVKLWNRNG--QLLQTLTGHSSSVR 512 (577)
T ss_dssp -----TSEEEEEET---TSCEEEEEECCSSCEEEEEECTTSCEEEEEET--TS--EEEEEETTS--CEEEEEECCSSCEE
T ss_pred -----CCEEEEEEC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--CC--EEEEEcCCC--CEEEEEeCCCCCEE
Confidence 123455553 33223344445556778999999998776542 22 455567655 22233322 1233
Q ss_pred ccccCCCCCCeeeCCCCCEEEEEe
Q 007338 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. +.|+|||+.|+...
T Consensus 513 ~---------l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 513 G---------VAFSPDGQTIASAS 527 (577)
T ss_dssp E---------EEECTTSSCEEEEE
T ss_pred E---------EEEcCCCCEEEEEE
Confidence 3 78999999776544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-06 Score=93.74 Aligned_cols=219 Identities=14% Similarity=0.179 Sum_probs=128.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|||+.|+.... ...|.+++..+...+.+..+.. .+..+.|+||+++++....+
T Consensus 264 ~v~~v~~~~d~~~l~~~~~----------d~~i~~w~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~~~d---- 324 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASD----------DKTVKLWNRNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDD---- 324 (577)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSCEEEEETTSCEEEEECCCSS-----CEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEcCCCCEEEEEeC----------CCEEEEEeCCCcEEEEEecCCC-----CeEEEEECCCCCEEEEEeCC----
Confidence 5788999999999877653 2467778876554555543322 25678899998877764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCC-CCceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-PAVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~-~~~~~~~~~SpDg~~i 189 (607)
..+.++++++ ....+.. ...+..++++|||++|
T Consensus 325 ---------------------------------------------~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 325 ---------------------------------------------KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp ---------------------------------------------SCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------CeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEE
Confidence 1122233332 2333332 2345678999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
+..... ..+.+|+..+.....+..- ...++.+.|||||+. |+.. . .
T Consensus 360 ~~~~~d-------------g~v~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~dg~~-l~~~--~--~--- 405 (577)
T 2ymu_A 360 ASASDD-------------KTVKLWNRNGQLLQTLTGH-------------SSSVRGVAFSPDGQT-IASA--S--D--- 405 (577)
T ss_dssp EEEETT-------------SEEEEEETTCCEEEEEECC-------------SSCEEEEEECTTSSC-EEEE--E--T---
T ss_pred EEEeCC-------------CEEEEEcCCCCEEEEecCC-------------CCCeEEEEECCCCCE-EEEE--e--C---
Confidence 877532 2678889877666555320 122346899999984 2211 1 1
Q ss_pred cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--cccc
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFE 347 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~ 347 (607)
...+.+++. .+.....+......+..++|+||++.|+.... ++ .+.+.|+.+ ...+.+.. ..+.
T Consensus 406 -----d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~--d~--~v~~w~~~~--~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 406 -----DKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD--DK--TVKLWNRNG--QLLQTLTGHSSSVR 471 (577)
T ss_dssp -----TSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEET--TS--EEEEEETTS--CEEEEEECCSSCEE
T ss_pred -----CCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEcC--CC--EEEEEECCC--CEEEEEcCCCCCEE
Confidence 123445542 23223344444556778999999998776542 22 455667655 22233322 1233
Q ss_pred ccccCCCCCCeeeCCCCCEEEEEe
Q 007338 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. +.|+|||+.|+...
T Consensus 472 ~---------~~~spd~~~las~~ 486 (577)
T 2ymu_A 472 G---------VAFSPDGQTIASAS 486 (577)
T ss_dssp E---------EEECTTSCEEEEEE
T ss_pred E---------EEEcCCCCEEEEEe
Confidence 2 78999999876554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.5e-07 Score=91.64 Aligned_cols=223 Identities=14% Similarity=0.152 Sum_probs=129.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|++..++-.+. ...|.++|+.+++.......... .+..+.|+||+++++....
T Consensus 82 ~v~~~~~~~~~~~l~s~s~----------D~~i~lWd~~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~g~~----- 142 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSL----------DAHIRLWDLENGKQIKSIDAGPV----DAWTLAFSPDSQYLATGTH----- 142 (321)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCTT----CCCCEEECTTSSEEEEECT-----
T ss_pred CEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCCEEEEEeCCCc----cEEEEEECCCCCEEEEEcC-----
Confidence 4788899999998765542 35788889998875433222211 1457899999988776421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
...+.++++ +++ ...+.. ...+..++|||||++
T Consensus 143 --------------------------------------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 143 --------------------------------------------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp --------------------------------------------TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred --------------------------------------------CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 123333444 332 222222 234668999999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
|+....+ ..|.+||+.+++...... +-...+..+.|+||++. |+ .. .
T Consensus 179 lasg~~d-------------g~i~iwd~~~~~~~~~~~------------~h~~~v~~l~~spd~~~-l~--s~--s--- 225 (321)
T 3ow8_A 179 LASGAID-------------GIINIFDIATGKLLHTLE------------GHAMPIRSLTFSPDSQL-LV--TA--S--- 225 (321)
T ss_dssp EEEEETT-------------SCEEEEETTTTEEEEEEC------------CCSSCCCEEEECTTSCE-EE--EE--C---
T ss_pred EEEEcCC-------------CeEEEEECCCCcEEEEEc------------ccCCceeEEEEcCCCCE-EE--EE--c---
Confidence 9877642 368999998775433211 01123456999999983 21 11 1
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--ccc
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVF 346 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~ 346 (607)
....+.+++. ..+.....+......+..++|+||+..|+.... ++ .+.+.|+.+++ ....+.. ..+
T Consensus 226 -----~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--D~--~v~iwd~~~~~-~~~~~~~h~~~v 293 (321)
T 3ow8_A 226 -----DDGYIKIYDV--QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS--DK--SVKVWDVGTRT-CVHTFFDHQDQV 293 (321)
T ss_dssp -----TTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TS--CEEEEETTTTE-EEEEECCCSSCE
T ss_pred -----CCCeEEEEEC--CCcceeEEEcCCCCceEEEEECCCCCEEEEEeC--CC--cEEEEeCCCCE-EEEEEcCCCCcE
Confidence 1123555553 222122234344456778999999998776542 23 35555776631 1122221 112
Q ss_pred cccccCCCCCCeeeCCCCCEEEEEe
Q 007338 347 ENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.. +.|+++|+.|+...
T Consensus 294 ~~---------v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 294 WG---------VKYNGNGSKIVSVG 309 (321)
T ss_dssp EE---------EEECTTSSEEEEEE
T ss_pred EE---------EEECCCCCEEEEEe
Confidence 22 78999998776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.4e-07 Score=91.33 Aligned_cols=250 Identities=12% Similarity=0.114 Sum_probs=143.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|+|.++. +++...+........+....|||||+.|+.... ...|.++|+.+++..+.......
T Consensus 114 ~v~lw~~~----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-- 177 (401)
T 4aez_A 114 NVYVWNAD----SGSVSALAETDESTYVASVKWSHDGSFLSVGLG----------NGLVDIYDVESQTKLRTMAGHQA-- 177 (401)
T ss_dssp EEEEEETT----TCCEEEEEECCTTCCEEEEEECTTSSEEEEEET----------TSCEEEEETTTCCEEEEECCCSS--
T ss_pred eEEEeeCC----CCcEeEeeecCCCCCEEEEEECCCCCEEEEECC----------CCeEEEEECcCCeEEEEecCCCC--
Confidence 47788876 677666654434446899999999999887653 25788889998875443322221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
.+..+.|. +++++.... ...|.++++.
T Consensus 178 --~v~~~~~~--~~~l~~~~~-------------------------------------------------dg~i~i~d~~ 204 (401)
T 4aez_A 178 --RVGCLSWN--RHVLSSGSR-------------------------------------------------SGAIHHHDVR 204 (401)
T ss_dssp --CEEEEEEE--TTEEEEEET-------------------------------------------------TSEEEEEETT
T ss_pred --ceEEEEEC--CCEEEEEcC-------------------------------------------------CCCEEEEecc
Confidence 25677883 445554311 1234444442
Q ss_pred -C-C-eeecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 166 -G-T-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 166 -g-~-~~~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+ . ...+. ....+..+.|+||++.|+....+ ..|.+||+.+++...... ...
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~------------~~~ 259 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKT------------NHN 259 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEEC------------CCS
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEec------------CCc
Confidence 2 2 22232 23356789999999998887642 368999998765443211 001
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
..+..+.|+|++...++-. ++ .....+.+++. ..+ +..........+..+.|+|++..++......+
T Consensus 260 ~~v~~~~~~p~~~~ll~~~----~g------s~d~~i~i~d~--~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATG----GG------TMDKQIHFWNA--ATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp SCCCEEEECTTSTTEEEEE----CC------TTTCEEEEEET--TTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTT
T ss_pred ceEEEEEECCCCCCEEEEe----cC------CCCCEEEEEEC--CCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCC
Confidence 2345699999988643311 11 01234666664 233 22222234556788999999998776543233
Q ss_pred cceEEEEEcCCCCCCCceEeeec-cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+ .|.++++.+. ....+... .....+ ..+.|+|+|+.|+...
T Consensus 327 g--~i~v~~~~~~--~~~~~~~~~~h~~~v-----~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 327 N--NLSIWSYSSS--GLTKQVDIPAHDTRV-----LYSALSPDGRILSTAA 368 (401)
T ss_dssp C--EEEEEEEETT--EEEEEEEEECCSSCC-----CEEEECTTSSEEEEEC
T ss_pred C--cEEEEecCCc--cceeEEEecCCCCCE-----EEEEECCCCCEEEEEe
Confidence 3 4555566552 22222110 001101 1278999999876654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-07 Score=90.63 Aligned_cols=133 Identities=9% Similarity=-0.075 Sum_probs=67.6
Q ss_pred ccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccc-cccccCCCCCCeeeCCCCCEEEEEeee-ccCc
Q 007338 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKK-ENDE 377 (607)
Q Consensus 300 ~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~dg~~~~~~~~~-~~~~ 377 (607)
....++|+|||+.++.... . ...|.++++++ +..+.+..... ......+ ..+.|+|||+.|++.... .+
T Consensus 212 ~~~~~~~spdg~~l~v~~~-~--~~~v~v~~~~~--g~~~~~~~~~~~~~~~~~~--~~i~~spdg~~l~v~~~~~~~-- 282 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINE-I--GGTVIAFRYAD--GMLDEIQTVAADTVNAQGS--GDIHLSPDGKYLYASNRLKAD-- 282 (361)
T ss_dssp CEEEEEECTTSSEEEEEET-T--TCEEEEEEEET--TEEEEEEEEESCSSCCCCE--EEEEECTTSSEEEEEECSSSC--
T ss_pred CCeEEEEcCCCCEEEEEcC-C--CCeEEEEEecC--CceEEeEEEecCCCCCCCc--ccEEECCCCCEEEEECCCCCC--
Confidence 3457899999986544331 1 23566677665 33333321100 0000000 127899999988776542 11
Q ss_pred CcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEE
Q 007338 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (607)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~ 457 (607)
...+| .++.++|+.+.+...... ..+. ...|+||++++++..... .--.+|.+
T Consensus 283 ~i~v~----------------~~~~~~g~~~~~~~~~~g---~~~~-------~~~~spdg~~l~~~~~~~-~~v~v~~~ 335 (361)
T 3scy_A 283 GVAIF----------------KVDETNGTLTKVGYQLTG---IHPR-------NFIITPNGKYLLVACRDT-NVIQIFER 335 (361)
T ss_dssp EEEEE----------------EECTTTCCEEEEEEEECS---SCCC-------EEEECTTSCEEEEEETTT-TEEEEEEE
T ss_pred EEEEE----------------EEcCCCCcEEEeeEecCC---CCCc-------eEEECCCCCEEEEEECCC-CCEEEEEE
Confidence 22222 344445655444221100 0111 135899998776655433 33346667
Q ss_pred ecCCCceeeEe
Q 007338 458 SWPLKKSSQIT 468 (607)
Q Consensus 458 ~~~~~~~~~Lt 468 (607)
+..+++++.+.
T Consensus 336 d~~~g~~~~~~ 346 (361)
T 3scy_A 336 DQATGLLTDIK 346 (361)
T ss_dssp CTTTCCEEECS
T ss_pred ECCCCcEeecc
Confidence 87777766554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-06 Score=90.60 Aligned_cols=237 Identities=12% Similarity=0.186 Sum_probs=124.1
Q ss_pred CcccceEEccCCC-EEEEEeecCcccccCCCceeEEEEEC----CCCc-------eeecccCCCcc-----ccccccceE
Q 007338 31 AKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA----ETGE-------AKPLFESPDIC-----LNAVFGSFV 93 (607)
Q Consensus 31 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~----~~g~-------~~~lt~~~~~~-----~~~~~~~~~ 93 (607)
..+....|||||+ .||.... ...|.++++ .+++ ...+....... ....+..+.
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEK----------NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEET----------BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred CceEEEEECCCCCcEEEEecC----------CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 3689999999999 7776542 246777788 7776 22232110000 011366889
Q ss_pred EecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecC
Q 007338 94 WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFG 172 (607)
Q Consensus 94 Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt 172 (607)
|+|++++++..... ..|.+++.+++ ...+.
T Consensus 116 ~s~~~~~l~~~~~d-------------------------------------------------g~i~i~~~~~~~~~~~~ 146 (425)
T 1r5m_A 116 WSHDGNSIVTGVEN-------------------------------------------------GELRLWNKTGALLNVLN 146 (425)
T ss_dssp ECTTSSEEEEEETT-------------------------------------------------SCEEEEETTSCEEEEEC
T ss_pred EcCCCCEEEEEeCC-------------------------------------------------CeEEEEeCCCCeeeecc
Confidence 99998877764210 12333344442 33333
Q ss_pred C-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCc---ccccccCCCCcce
Q 007338 173 T-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV---CYNSVREGMRSIS 248 (607)
Q Consensus 173 ~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~ 248 (607)
. ...+..+.|+||+++|+....+ ..+.+||+.+++............... .+.........+.
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVE-------------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETT-------------CCEEEEETTTTEEEEEECCC---------------CCCBSCCE
T ss_pred CCCccEEEEEECCCCCEEEEEecC-------------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence 2 3356789999999998877532 368899998775544322111000000 0000000144688
Q ss_pred eecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEE
Q 007338 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (607)
Q Consensus 249 wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~ 328 (607)
|+|++. ++ +.. ....+.+++. ..+.....+......+..+.|+|++..|+.... + ..|.+
T Consensus 214 ~~~~~~--~~-~~~-----------~~g~i~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d--~~i~i 273 (425)
T 1r5m_A 214 WVDDDK--FV-IPG-----------PKGAIFVYQI--TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD--D--GTLRI 273 (425)
T ss_dssp EEETTE--EE-EEC-----------GGGCEEEEET--TCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--T--SCEEE
T ss_pred EcCCCE--EE-EEc-----------CCCeEEEEEc--CCCceeeeeccCCCceEEEEECCCCCEEEEEcC--C--CEEEE
Confidence 998864 22 111 1134555553 222122334344556778999999987766542 2 25777
Q ss_pred EcCCCCCCCceEee--eccccccccCCCCCCeeeCCCCCEEEEE
Q 007338 329 VCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (607)
Q Consensus 329 ~dl~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~ 370 (607)
+|+...+ ....+. ...+.. +.|+|++ .++..
T Consensus 274 ~d~~~~~-~~~~~~~~~~~i~~---------~~~~~~~-~l~~~ 306 (425)
T 1r5m_A 274 WHGGNGN-SQNCFYGHSQSIVS---------ASWVGDD-KVISC 306 (425)
T ss_dssp ECSSSBS-CSEEECCCSSCEEE---------EEEETTT-EEEEE
T ss_pred EECCCCc-cceEecCCCccEEE---------EEECCCC-EEEEE
Confidence 7887631 222221 111222 7889988 44443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-07 Score=93.15 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=89.1
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..|++.++. +++...............+.|||||+.+++... ....|+++|+++++...........
T Consensus 21 ~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---------~~~~i~~~d~~t~~~~~~~~~~~~~ 87 (349)
T 1jmx_B 21 NNLHVVDVA----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---------HYGDIYGIDLDTCKNTFHANLSSVP 87 (349)
T ss_dssp TEEEEEETT----TTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---------TTTEEEEEETTTTEEEEEEESCCST
T ss_pred CeEEEEECC----CCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---------CCCcEEEEeCCCCcEEEEEEccccc
Confidence 357777876 565544433333224778999999998766642 3468999999998865433222100
Q ss_pred --ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 85 --LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 85 --~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
....+..+.|+||++.+++....... .. ..|. .....|+++
T Consensus 88 ~~~~~~~~~~~~spdg~~l~~~~~~~~~-------------------~~----~~~~--------------~~~~~i~~~ 130 (349)
T 1jmx_B 88 GEVGRSMYSFAISPDGKEVYATVNPTQR-------------------LN----DHYV--------------VKPPRLEVF 130 (349)
T ss_dssp TEEEECSSCEEECTTSSEEEEEEEEEEE-------------------CS----SCEE--------------ECCCEEEEE
T ss_pred ccccccccceEECCCCCEEEEEcccccc-------------------cc----cccc--------------cCCCeEEEE
Confidence 00114578999998877765210000 00 0000 013578888
Q ss_pred eC-CCCee----ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 163 SL-DGTAK----DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 163 ~~-~g~~~----~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
++ +++.. .+..+.....++|||||+ +++. . .+|+++|+.+++...
T Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~--------------~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 131 STADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-G--------------PDIYKMDVKTGKYTV 180 (349)
T ss_dssp EGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-S--------------SSEEEECTTTCCEEE
T ss_pred ECCCccccceeeeccCCCcccceeECCCCc-EEEc-c--------------CcEEEEeCCCCceec
Confidence 88 54322 122233345678999999 6553 1 158999998776554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=96.89 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=43.5
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+...+|||||++||..+. .....|.++|+++++......... .+..+.|+||+++++..
T Consensus 136 ~~~v~fSpDg~~la~as~--------~~d~~i~iwd~~~~~~~~~~~~~~-----~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS--------KVPAIMRIIDPSDLTEKFEIETRG-----EVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEEECTTSSCEEEEES--------CSSCEEEEEETTTTEEEEEEECSS-----CCCEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEEC--------CCCCEEEEeECCCCcEEEEeCCCC-----ceEEEEEccCCceEEec
Confidence 456899999999987653 223578899999988654433322 26789999999988774
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-06 Score=88.86 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=78.5
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
..+..++|||||++|+..+.+ ..|.+||+.+++...... +-...+..+.|+|++.
T Consensus 128 ~~V~~v~~spdg~~l~sgs~d-------------~~i~iwd~~~~~~~~~~~------------~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSKD-------------ICIKVWDLAQQVVLSSYR------------AHAAQVTCVAASPHKD 182 (344)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECSSCT
T ss_pred CCEEEEEECCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEc------------CcCCceEEEEecCCCC
Confidence 456789999999999877542 368999998876543211 0011234588999987
Q ss_pred ceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee--cCcccceeeEcCCC-cEEEEEEeccccceEEEEEcC
Q 007338 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCP 331 (607)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~--~~~~~~~~~ws~Dg-~~l~~~~~~~~~~~~l~~~dl 331 (607)
..++-. . . ...+.+++. ..+.....+.. .......+.|+|++ ..|+.... + ..|.++|+
T Consensus 183 ~~l~s~--s--~--------D~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~--d--g~v~~wd~ 244 (344)
T 4gqb_B 183 SVFLSC--S--E--------DNRILLWDT--RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE--N--GTVSLVDT 244 (344)
T ss_dssp TEEEEE--E--T--------TSCEEEEET--TSSSCEEECC----CCCEEEEEECSSCTTEEEEEET--T--SEEEEEES
T ss_pred Cceeee--c--c--------ccccccccc--cccceeeeeecceeeccceeeeecCCCCcceEEecc--C--CcEEEEEC
Confidence 543211 1 1 123555553 22212222221 22345678999975 45555431 2 25666788
Q ss_pred CCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 332 GSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 332 ~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.+++ ....+.. ..+.. +.|+|+|..+++..
T Consensus 245 ~~~~-~~~~~~~h~~~v~~---------v~fsp~g~~~lasg 276 (344)
T 4gqb_B 245 KSTS-CVLSSAVHSQCVTG---------LVFSPHSVPFLASL 276 (344)
T ss_dssp CC---CCEEEECCSSCEEE---------EEECSSSSCCEEEE
T ss_pred CCCc-EEEEEcCCCCCEEE---------EEEccCCCeEEEEE
Confidence 7742 2233321 12333 78999986555443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-06 Score=90.74 Aligned_cols=118 Identities=8% Similarity=-0.037 Sum_probs=66.2
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE-eccCCCCCCCCcccccccCCCCcceeecC-
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRAD- 252 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspd- 252 (607)
..+..++|+|||++|+..... ..+++|++.++.... ... .+.+-...+..+.|+||
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~-------------g~v~~~~~~~~~~~~~~~~---------~~~~h~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKF-------------GDVYSIDINSIPEEKFTQE---------PILGHVSMLTDVHLIKDS 207 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTSCCCSSCCCC---------CSEECSSCEEEEEEEECT
T ss_pred CCceEEEEcCCCCEEEEEeCC-------------CcEEEEecCCcccccccce---------eeecccCceEEEEEcCCC
Confidence 456789999999999887531 368899987654321 000 00001122345899999
Q ss_pred --CCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCcee-eeecCcccceeeEcCCCcEEEEEEeccccceEEEEE
Q 007338 253 --KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 253 --g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~ 329 (607)
++. |+ .... ...+.+++. ..+..... +......+..+.|+ |+..|+.... + ..|.++
T Consensus 208 ~~~~~-l~-s~~~-----------d~~i~vwd~--~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~--d--~~v~vw 267 (450)
T 2vdu_B 208 DGHQF-II-TSDR-----------DEHIKISHY--PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG--D--DKIFAW 267 (450)
T ss_dssp TSCEE-EE-EEET-----------TSCEEEEEE--SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES--S--SEEEEE
T ss_pred CCCcE-EE-EEcC-----------CCcEEEEEC--CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC--C--CeEEEE
Confidence 652 22 2111 124555553 22212222 22344567889999 9988776542 2 367777
Q ss_pred cCCCC
Q 007338 330 CPGSK 334 (607)
Q Consensus 330 dl~~~ 334 (607)
|+.++
T Consensus 268 d~~~~ 272 (450)
T 2vdu_B 268 DWKTG 272 (450)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 88773
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-07 Score=91.99 Aligned_cols=181 Identities=9% Similarity=0.007 Sum_probs=95.2
Q ss_pred eeEEEeccCCCCCCCeeeeecC--CCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-CCceeecccCCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGY--PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~--~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~ 82 (607)
.||+.++.. .+|+.+.+... ..........|||||++|+. .+. + .|.+++++ +|+..++.....
T Consensus 15 ~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~-~~~-------~---~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG-AAM-------K---KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE-EEB-------T---EEEEEEEEETTEEEEEEEEEC
T ss_pred cEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEE-Ecc-------c---eEEEEEECCCCCEEEeeEeec
Confidence 578777642 36666555432 12225778999999998754 432 2 67888876 777655432211
Q ss_pred ccccccccceEEecCCeE-EEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 83 ICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
.. ....+.|+||++. +++.... +.. ..+... .+..+ ....+|.
T Consensus 82 ~g---~~~~~~~spdg~~l~~~~~~~----------------------~~~---~~~~~~-~~~~~-------g~v~v~~ 125 (365)
T 1jof_A 82 GG---HPRANDADTNTRAIFLLAAKQ----------------------PPY---AVYANP-FYKFA-------GYGNVFS 125 (365)
T ss_dssp CS---SGGGGCTTSCCEEEEEEECSS----------------------TTC---CEEEEE-ESSSC-------CEEEEEE
T ss_pred CC---CCccEEECCCCCEEEEEEecC----------------------Ccc---eeccce-eecCC-------ceEEEEc
Confidence 00 1346789999885 3333210 000 000000 00000 1123343
Q ss_pred EeCCCCee-ecC-----CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC-CCeeEEeccCCCCCCCC
Q 007338 162 GSLDGTAK-DFG-----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIP 234 (607)
Q Consensus 162 ~~~~g~~~-~lt-----~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~ 234 (607)
++.+|+.. .+. .......+.|||||++|++.... ...|++|+++ +++...+.......
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~~--- 190 (365)
T 1jof_A 126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAPD--- 190 (365)
T ss_dssp ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECSS---
T ss_pred cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecCC---
Confidence 43345432 221 22345689999999998765321 1368889987 77665443211000
Q ss_pred cccccccCCCCcceeecCCCc
Q 007338 235 VCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~ 255 (607)
...+++.+.|||||+.
T Consensus 191 -----~g~~p~~~~~spdg~~ 206 (365)
T 1jof_A 191 -----PGDHPRWVAMHPTGNY 206 (365)
T ss_dssp -----TTCCEEEEEECTTSSE
T ss_pred -----CCCCCCEeEECCCCCE
Confidence 0123556899999983
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.5e-06 Score=87.79 Aligned_cols=321 Identities=9% Similarity=0.016 Sum_probs=163.0
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC--CCCceeecccCCCcc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDIC 84 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~--~~g~~~~lt~~~~~~ 84 (607)
|.+-|+. +++..... ..+.......+||||++|+... . + ..|.++|+ ++++...-.....
T Consensus 161 V~v~D~~----t~~~~~~i--~~g~~~~~v~~spdg~~l~v~~-~-------d--~~V~v~D~~~~t~~~~~~i~~g~-- 222 (543)
T 1nir_A 161 IALVDGD----SKKIVKVI--DTGYAVHISRMSASGRYLLVIG-R-------D--ARIDMIDLWAKEPTKVAEIKIGI-- 222 (543)
T ss_dssp EEEEETT----TCCEEEEE--ECSTTEEEEEECTTSCEEEEEE-T-------T--SEEEEEETTSSSCEEEEEEECCS--
T ss_pred EEEEECC----CceEEEEE--ecCcccceEEECCCCCEEEEEC-C-------C--CeEEEEECcCCCCcEEEEEecCC--
Confidence 5555654 55543332 2222367888999999876554 2 2 68999999 7776533222211
Q ss_pred ccccccceEEec----CCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 85 LNAVFGSFVWVN----NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 85 ~~~~~~~~~Wsp----d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
....+.++| |+++++..... ...+.
T Consensus 223 ---~p~~va~sp~~~~dg~~l~v~~~~------------------------------------------------~~~v~ 251 (543)
T 1nir_A 223 ---EARSVESSKFKGYEDRYTIAGAYW------------------------------------------------PPQFA 251 (543)
T ss_dssp ---EEEEEEECCSTTCTTTEEEEEEEE------------------------------------------------SSEEE
T ss_pred ---CcceEEeCCCcCCCCCEEEEEEcc------------------------------------------------CCeEE
Confidence 146789999 98887764210 12233
Q ss_pred EEeC-CCCee-ecC------------CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEecc
Q 007338 161 LGSL-DGTAK-DFG------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (607)
Q Consensus 161 ~~~~-~g~~~-~lt------------~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (607)
++|. ++++. .+. .......+.+|||++.++++... ...|+++|..+.+.-.+..
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEEEE
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCcceeEE
Confidence 3333 23211 111 11134578999999988777532 2378999987653222211
Q ss_pred CCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC---cccce
Q 007338 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---LRFRS 303 (607)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~---~~~~~ 303 (607)
.+ ....++.+.|+|||+. +++.... .+.+.++|. .+| +........ .....
T Consensus 320 i~-----------~~~~~~~~~~spdg~~--l~va~~~----------~~~v~v~D~--~tg-~l~~~i~~g~~ph~g~g 373 (543)
T 1nir_A 320 IG-----------AAPFLHDGGWDSSHRY--FMTAANN----------SNKVAVIDS--KDR-RLSALVDVGKTPHPGRG 373 (543)
T ss_dssp EE-----------CCSSCCCEEECTTSCE--EEEEEGG----------GTEEEEEET--TTT-EEEEEEECSSSBCCTTC
T ss_pred ec-----------cCcCccCceECCCCCE--EEEEecC----------CCeEEEEEC--CCC-eEEEeeccCCCCCCCCC
Confidence 11 1223457899999983 2332211 234555663 333 222211111 11122
Q ss_pred eeE-cCCCc-EEEEEEeccccceEEEEEcCCCCCC---CceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeecc---
Q 007338 304 VSW-CDDSL-ALVNETWYKTSQTRTWLVCPGSKDV---APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN--- 375 (607)
Q Consensus 304 ~~w-s~Dg~-~l~~~~~~~~~~~~l~~~dl~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~--- 375 (607)
..| +|++. .++.... .+ ..|-++|+++.+. ..+++-..... ..+...+.++|||+.|+.......
T Consensus 374 ~~~~~p~~g~~~~s~~~-~d--~~V~v~d~~~~~~~~~~~~~v~~l~~~----g~~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 374 ANFVHPKYGPVWSTSHL-GD--GSISLIGTDPKNHPQYAWKKVAELQGQ----GGGSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp EEEEETTTEEEEEEEBS-SS--SEEEEEECCTTTCTTTBTSEEEEEECS----CSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred cccCCCCCccEEEeccC-CC--ceEEEEEeCCCCCchhcCeEEEEEEcC----CCCceEEEcCCCCCcEEEecCCCCCcc
Confidence 334 57744 4444321 11 2566667765211 12332100000 012223778999999887541000
Q ss_pred -CcCcEEEEeecCCCCCCCcceeEeeecCCCCee-EEeecC----CcccceeeeeeecCCCcccccccCCEEEEEeecc-
Q 007338 376 -DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESN----REKYFETAVALVFGQGEEDINLNQLKILTSKESK- 448 (607)
Q Consensus 376 -~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~-~l~~~~----~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~- 448 (607)
+.. +..+|+++++.. .++.-. .......+.. ..|++||+.++++..+.
T Consensus 447 ~~~~------------------v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~g~~~~~s~~~~~ 501 (543)
T 1nir_A 447 ISQS------------------VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ-------PEYNKRGDEVWFSVWNGK 501 (543)
T ss_dssp HHTC------------------EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE-------EEECSSSSEEEEEEECCT
T ss_pred cCce------------------EEEEECCCCCCCeEEeechhhcccCCCCCceEe-------ccCCCCCCEEEEEeecCC
Confidence 012 223566666543 222100 0000011211 46899999988876543
Q ss_pred cccceEEEEecCCCceee
Q 007338 449 TEITQYHILSWPLKKSSQ 466 (607)
Q Consensus 449 ~~p~~l~~~~~~~~~~~~ 466 (607)
.....+.++|..+++++.
T Consensus 502 ~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 502 NDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp TSCCEEEEEETTTTEEEE
T ss_pred CCCCeEEEEECCCceEEE
Confidence 446789999988887654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-06 Score=87.56 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=120.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|||||+.|+.... ...|.++|..+.....+..+.. .+..+.|+|++++++....++
T Consensus 110 ~v~~~~~s~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~--- 171 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVE----------NGELRLWNKTGALLNVLNFHRA-----PIVSVKWNKDGTHIISMDVEN--- 171 (425)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSCEEEEETTSCEEEEECCCCS-----CEEEEEECTTSSEEEEEETTC---
T ss_pred ceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCeeeeccCCCc-----cEEEEEECCCCCEEEEEecCC---
Confidence 5889999999999887653 2467777855444555543322 267899999988777642111
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC-CCee-----ecC-CCCceeeeeeCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAK-----DFG-TPAVYTAVEPSP 184 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----~lt-~~~~~~~~~~Sp 184 (607)
.+ +.+.- . ....+..+... .... ... ....+..+.|+|
T Consensus 172 ----------~i------------~iwd~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 172 ----------VT------------ILWNV--I-----------SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp ----------CE------------EEEET--T-----------TTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred ----------eE------------EEEEC--C-----------CCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence 00 00000 0 00111112110 0000 000 111256788999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
++. ++.... ...|++||+.+++...... .....+..+.|+|+++. |+ ... .
T Consensus 217 ~~~-~~~~~~-------------~g~i~~~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~-l~-~~~-~ 267 (425)
T 1r5m_A 217 DDK-FVIPGP-------------KGAIFVYQITEKTPTGKLI------------GHHGPISVLEFNDTNKL-LL-SAS-D 267 (425)
T ss_dssp TTE-EEEECG-------------GGCEEEEETTCSSCSEEEC------------CCSSCEEEEEEETTTTE-EE-EEE-T
T ss_pred CCE-EEEEcC-------------CCeEEEEEcCCCceeeeec------------cCCCceEEEEECCCCCE-EE-EEc-C
Confidence 865 444332 2368999998764332211 00112345899999982 22 211 1
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee-
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD- 343 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~- 343 (607)
...+.+++. ..+.....+......+..+.|+|++ .++.... + ..|.++|+.+. +....+.
T Consensus 268 ----------d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--d--~~i~i~d~~~~--~~~~~~~~ 328 (425)
T 1r5m_A 268 ----------DGTLRIWHG--GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSM--D--GSVRLWSLKQN--TLLALSIV 328 (425)
T ss_dssp ----------TSCEEEECS--SSBSCSEEECCCSSCEEEEEEETTT-EEEEEET--T--SEEEEEETTTT--EEEEEEEC
T ss_pred ----------CCEEEEEEC--CCCccceEecCCCccEEEEEECCCC-EEEEEeC--C--CcEEEEECCCC--cEeEeccc
Confidence 123555553 2221233343345567889999999 5554432 1 36777888763 2222221
Q ss_pred --ccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 344 --RVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 344 --~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
..+.. +.|+|+|+.++....
T Consensus 329 ~~~~i~~---------~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 329 DGVPIFA---------GRISQDGQKYAVAFM 350 (425)
T ss_dssp TTCCEEE---------EEECTTSSEEEEEET
T ss_pred CCccEEE---------EEEcCCCCEEEEEEC
Confidence 11222 789999998776553
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-07 Score=92.75 Aligned_cols=229 Identities=8% Similarity=0.064 Sum_probs=126.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....||||+ +|+..+. ...|.++|+++++...............+..+.|+||+++|+....+
T Consensus 84 ~v~~~~~s~d~-~l~~~s~----------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---- 148 (344)
T 4gqb_B 84 GVADLTWVGER-GILVASD----------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---- 148 (344)
T ss_dssp CEEEEEEETTT-EEEEEET----------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEeCCC-eEEEEEC----------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 47789999997 4554332 24688889988864322111000111226789999999987764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
..|.++|+ +++ ...+.. ...+..+.|+|++..
T Consensus 149 ---------------------------------------------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 149 ---------------------------------------------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 12334455 443 233332 335678999999987
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE-eccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
++++... ...|.+||+.+++... +... . ....+..+.|+|++...++-. .
T Consensus 184 ~l~s~s~------------D~~v~iwd~~~~~~~~~~~~~-~----------~~~~~~~~~~~p~~~~~l~sg--~---- 234 (344)
T 4gqb_B 184 VFLSCSE------------DNRILLWDTRCPKPASQIGCS-A----------PGYLPTSLAWHPQQSEVFVFG--D---- 234 (344)
T ss_dssp EEEEEET------------TSCEEEEETTSSSCEEECC---------------CCCEEEEEECSSCTTEEEEE--E----
T ss_pred ceeeecc------------ccccccccccccceeeeeecc-e----------eeccceeeeecCCCCcceEEe--c----
Confidence 7666432 1368899998765433 3210 0 001123588999776543321 1
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE-EEEEEeccccceEEEEEcCCCCCCCceEeee--c
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--R 344 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~-l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~ 344 (607)
....+.+++. ..+.....+......+..++|+|||.. |+.... ++ .|.+.|+.++ +...+.. .
T Consensus 235 ------~dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~--D~--~i~vwd~~~~--~~~~~~~H~~ 300 (344)
T 4gqb_B 235 ------ENGTVSLVDT--KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE--DC--SLAVLDSSLS--ELFRSQAHRD 300 (344)
T ss_dssp ------TTSEEEEEES--CC--CCEEEECCSSCEEEEEECSSSSCCEEEEET--TS--CEEEECTTCC--EEEEECCCSS
T ss_pred ------cCCcEEEEEC--CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC--CC--eEEEEECCCC--cEEEEcCCCC
Confidence 1124556664 333234445555566788999999864 554431 23 4555688763 2222221 1
Q ss_pred cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 345 VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+.. +.|+|+|+.+++...
T Consensus 301 ~V~~---------v~~sp~~~~llas~s 319 (344)
T 4gqb_B 301 FVRD---------ATWSPLNHSLLTTVG 319 (344)
T ss_dssp CEEE---------EEECSSSTTEEEEEE
T ss_pred CEEE---------EEEeCCCCeEEEEEc
Confidence 1333 789999987665543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-06 Score=86.85 Aligned_cols=263 Identities=9% Similarity=0.026 Sum_probs=138.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|.+.++. +++...... .....+....|+|||+.|+.... ...|.++|+.+++.........
T Consensus 55 ~i~vwd~~----~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--- 116 (369)
T 3zwl_B 55 SASVWYSL----NGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSA----------DYSIKLWDVSNGQCVATWKSPV--- 116 (369)
T ss_dssp CEEEEETT----TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECSS---
T ss_pred EEEEEeCC----Cchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEeecCC---
Confidence 46777776 444433321 12336899999999999877653 3578899999988765543332
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
.+..+.|+|++++++........ ..+.+ ..+.- . ... ....+.... .
T Consensus 117 --~v~~~~~~~~~~~l~~~~~~~~~--------~~g~i------------~~~d~--~--~~~------~~~~~~~~~-~ 163 (369)
T 3zwl_B 117 --PVKRVEFSPCGNYFLAILDNVMK--------NPGSI------------NIYEI--E--RDS------ATHELTKVS-E 163 (369)
T ss_dssp --CEEEEEECTTSSEEEEEECCBTT--------BCCEE------------EEEEE--E--ECT------TTCCEEEEC-S
T ss_pred --CeEEEEEccCCCEEEEecCCccC--------CCCEE------------EEEEe--c--CCc------cceeecccc-c
Confidence 26789999998877765321000 00000 00000 0 000 000000000 0
Q ss_pred CCeeec-CCCC--ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCccccccc
Q 007338 166 GTAKDF-GTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 166 g~~~~l-t~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
.....+ .... .+..+.|+||++.|+..... ..|++||+.+ +........ -.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~------------~~ 218 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSIDL------------HE 218 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEEC------------CS
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEec------------CC
Confidence 111111 1112 55689999999988877532 3689999986 433322110 01
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc-
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK- 320 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~- 320 (607)
..+..+.|+||++. |+ ... ....+.+++. ..+ +.............+.|+|++..++......
T Consensus 219 ~~v~~~~~~~~~~~-l~-~~~-----------~d~~i~v~d~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 219 KSISDMQFSPDLTY-FI-TSS-----------RDTNSFLVDV--STL-QVLKKYETDCPLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp SCEEEEEECTTSSE-EE-EEE-----------TTSEEEEEET--TTC-CEEEEEECSSCEEEEEECSSSSEEEEEECCC-
T ss_pred CceeEEEECCCCCE-EE-Eec-----------CCceEEEEEC--CCC-ceeeeecCCCCceeEEecCCCceEEEeecCCC
Confidence 22345899999983 22 111 1134566664 222 2222223445677899999998776553221
Q ss_pred ---------ccceEEEEEcCCCCCCCceEeee---ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 321 ---------TSQTRTWLVCPGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 321 ---------~~~~~l~~~dl~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.+...+.++|+.+. +....+. ..+.. +.|+|+|+.++...
T Consensus 283 ~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~---------~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 283 KDVTTTSANEGKFEARFYHKIFE--EEIGRVQGHFGPLNT---------VAISPQGTSYASGG 334 (369)
T ss_dssp ------------CEEEEEETTTC--CEEEEEECCSSCEEE---------EEECTTSSEEEEEE
T ss_pred ceEEEEecCCCcceeEEEecCCC--cchhheecccCcEEE---------EEECCCCCEEEEEc
Confidence 11125666777663 2222221 11222 78999999776554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-05 Score=79.26 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=114.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|||||++||.... ...|.++++.+++..+....... .+..+.|+|++++++....
T Consensus 25 ~v~~~~~s~~~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~~----- 85 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA----------DKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSNLLVSASD----- 85 (312)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEET-----
T ss_pred cEEEEEECCCCCEEEEeeC----------CCeEEEEeCCCcccchhhccCCC----ceEEEEEcCCCCEEEEECC-----
Confidence 5889999999999877653 24677889988876544322222 2668999999888776421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
...|.++++ +++ ...+.. ...+..+.|+|+++.
T Consensus 86 --------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 86 --------------------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp --------------------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred --------------------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 123444455 343 223322 234568899999998
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeE-EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
|+....+ ..|.+||+.+++.. .+.. -...+..+.|+|+++. + .....
T Consensus 122 l~s~~~d-------------~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~-l-~~~~~---- 169 (312)
T 4ery_A 122 IVSGSFD-------------ESVRIWDVKTGKCLKTLPA-------------HSDPVSAVHFNRDGSL-I-VSSSY---- 169 (312)
T ss_dssp EEEEETT-------------SCEEEEETTTCCEEEEECC-------------CSSCEEEEEECTTSSE-E-EEEET----
T ss_pred EEEEeCC-------------CcEEEEECCCCEEEEEecC-------------CCCcEEEEEEcCCCCE-E-EEEeC----
Confidence 8876532 36899999876543 3321 0111235899999883 2 11111
Q ss_pred CccccCCCceEEeccCCCCCCCCceeee-ecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
...+.+++. ..+.....+. .....+..+.|+|++..|+.... + ..+.++|+.+
T Consensus 170 -------d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d--~~i~iwd~~~ 223 (312)
T 4ery_A 170 -------DGLCRIWDT--ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL--D--NTLKLWDYSK 223 (312)
T ss_dssp -------TSCEEEEET--TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET--T--TEEEEEETTT
T ss_pred -------CCcEEEEEC--CCCceeeEEeccCCCceEEEEECCCCCEEEEEcC--C--CeEEEEECCC
Confidence 123455553 2221112222 12234667899999998776542 2 2567778876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-06 Score=88.03 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=121.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc---eeecccCCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPD 82 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~ 82 (607)
.|.+.++.. .+++.+.+..+..........|||||++|++... ....|.++|+..++ ..+......
T Consensus 61 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~ 129 (343)
T 1ri6_A 61 RVLAYRIAP--DDGALTFAAESALPGSLTHISTDHQGQFVFVGSY---------NAGNVSVTRLEDGLPVGVVDVVEGLD 129 (343)
T ss_dssp EEEEEEECT--TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET---------TTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred eEEEEEecC--CCCceeeccccccCCCCcEEEEcCCCCEEEEEec---------CCCeEEEEECCCCccccccccccCCC
Confidence 345555431 2455555544443336788999999999877653 23467777874332 222222111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+..+.|+||++.++.... ....|+++
T Consensus 130 -----~~~~~~~s~dg~~l~~~~~------------------------------------------------~~~~v~~~ 156 (343)
T 1ri6_A 130 -----GCHSANISPDNRTLWVPAL------------------------------------------------KQDRICLF 156 (343)
T ss_dssp -----TBCCCEECTTSSEEEEEEG------------------------------------------------GGTEEEEE
T ss_pred -----CceEEEECCCCCEEEEecC------------------------------------------------CCCEEEEE
Confidence 1567899999887666420 01234444
Q ss_pred eC-C-CCeee-----cC--CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC--CCeeEEeccCCCCC
Q 007338 163 SL-D-GTAKD-----FG--TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (607)
Q Consensus 163 ~~-~-g~~~~-----lt--~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (607)
++ + ++... +. .......+.|+|||++|+++... ...+.+|+++ +++...+....
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------------~~~i~~~~~~~~~g~~~~~~~~~--- 221 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------------NSSVDVWELKDPHGNIECVQTLD--- 221 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEESSCTTSCCEEEEEEE---
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEEecCCCCcEEEEeecc---
Confidence 44 2 43321 11 12234578999999999887532 2367888884 45443322110
Q ss_pred CCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee--ecCcccceeeEcCC
Q 007338 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDD 309 (607)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~--~~~~~~~~~~ws~D 309 (607)
..+..+. ....+..+.|+|||+. | ++... . ...+.+++.....+ ..+.+. ........++|+||
T Consensus 222 ~~~~~~~-~~~~~~~i~~s~dg~~-l-~v~~~--~--------~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~s~d 287 (343)
T 1ri6_A 222 MMPENFS-DTRWAADIHITPDGRH-L-YACDR--T--------ASLITVFSVSEDGS-VLSKEGFQPTETQPRGFNVDHS 287 (343)
T ss_dssp CSCTTCC-SCCCEEEEEECTTSSE-E-EEEET--T--------TTEEEEEEECTTSC-CEEEEEEEECSSSCCCEEECTT
T ss_pred ccCcccc-ccCCccceEECCCCCE-E-EEEec--C--------CCEEEEEEEcCCCC-ceEEeeeecCCCccceEEECCC
Confidence 0000000 0011224899999983 2 22211 1 13455555311111 222222 12223667899999
Q ss_pred CcEEEEEEeccccceEEEEEcCCC
Q 007338 310 SLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
|..++.... ..+.-.+|.+|..+
T Consensus 288 g~~l~~~~~-~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 288 GKYLIAAGQ-KSHHISVYEIVGEQ 310 (343)
T ss_dssp SSEEEEECT-TTCEEEEEEEETTT
T ss_pred CCEEEEecC-CCCeEEEEEEcCCC
Confidence 987655432 23445677778776
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-05 Score=81.61 Aligned_cols=234 Identities=9% Similarity=0.062 Sum_probs=130.6
Q ss_pred cccceEEccCC-CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCCC
Q 007338 32 KINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-d~~~l~~~~~~~~ 109 (607)
.+....|+||| +.||.... ...|.++|+.+++......... ....+..+.|+| ++++++....
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~--- 139 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK----------GGDIILWDYDVQNKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSSI--- 139 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB----------TSCEEEEETTSTTCEEEECCCS--TTCBEEEEEEETTEEEEEEEEET---
T ss_pred CEEEEEECCCCCCEEEEEcC----------CCeEEEEeCCCcccceeeecCC--cCCceeEEEeCCCCCCEEEEEeC---
Confidence 58999999999 66665543 2578888999887655432110 112367899999 4677666421
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCC----CCceeeeeeCC
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT----PAVYTAVEPSP 184 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~----~~~~~~~~~Sp 184 (607)
...|.++++.+ ....+.. ...+..++|+|
T Consensus 140 ----------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 140 ----------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp ----------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET
T ss_pred ----------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEECC
Confidence 12333444432 2222221 13467899999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
|++.|+....+ ..|.+||+.+.....+..- ...+..+.|+|+++..++-. .
T Consensus 174 ~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~l~s~-~-- 224 (383)
T 3ei3_B 174 SRQMLATGDST-------------GRLLLLGLDGHEIFKEKLH-------------KAKVTHAEFNPRCDWLMATS-S-- 224 (383)
T ss_dssp TTTEEEEEETT-------------SEEEEEETTSCEEEEEECS-------------SSCEEEEEECSSCTTEEEEE-E--
T ss_pred CCCEEEEECCC-------------CCEEEEECCCCEEEEeccC-------------CCcEEEEEECCCCCCEEEEE-e--
Confidence 99988877532 3789999977666655320 12234699999998533321 1
Q ss_pred CCCCccccCCCceEEeccCCCCC--CCCceeeeecCcccceeeEcC-CCcEEEEEEeccccceEEEEEcCCCCCCCceEe
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAE--GEKPEILHKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~l~~~~~~~~~~~ws~-Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l 341 (607)
. ...+.+++..... + ...........+..+.|+| ||..|+.... + ..|.++|+.+.+ ....+
T Consensus 225 -~--------d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~--d--~~i~iwd~~~~~-~~~~~ 289 (383)
T 3ei3_B 225 -V--------DATVKLWDLRNIKDKN-SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ--R--NEIRVYSSYDWS-KPDQI 289 (383)
T ss_dssp -T--------TSEEEEEEGGGCCSTT-CEEEEEECSSCEEEEEECTTTSCEEEEEES--S--SEEEEEETTBTT-SCSEE
T ss_pred -C--------CCEEEEEeCCCCCccc-ceEEEecCCCceEEEEEcCCCCCEEEEEcC--C--CcEEEEECCCCc-ccccc
Confidence 1 1234555531000 1 2222223455678899999 9988776542 1 367777887742 22333
Q ss_pred eeccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
...... .+.........|+|++..+.+..
T Consensus 290 ~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 290 IIHPHR-QFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp EECCBC-CCTTSCCCCCEECSSSSEEEEEC
T ss_pred cccccc-ccccccceEEeccCCCCceEEEe
Confidence 221100 01011111256788877665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-06 Score=98.22 Aligned_cols=230 Identities=12% Similarity=0.108 Sum_probs=134.1
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCe
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.+.+..... .+....|||||+.||.... ...|.++|+.+++.. .+..+.. .+..+.|+|+++
T Consensus 6 ~~~~~~h~~--~v~~i~~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~ 68 (814)
T 3mkq_A 6 KKTFSNRSD--RVKGIDFHPTEPWVLTTLY----------SGRVEIWNYETQVEVRSIQVTET-----PVRAGKFIARKN 68 (814)
T ss_dssp EEEEEEECS--CEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGT
T ss_pred ceeeecCCC--ceEEEEECCCCCEEEEEeC----------CCEEEEEECCCCceEEEEecCCC-----cEEEEEEeCCCC
Confidence 345554333 5899999999999988753 257888999888654 3432222 267899999988
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecC-CCCc
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAV 176 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt-~~~~ 176 (607)
+++.... ...|.++++ +++ ...+. ....
T Consensus 69 ~l~~~~~-------------------------------------------------dg~i~vw~~~~~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 69 WIIVGSD-------------------------------------------------DFRIRVFNYNTGEKVVDFEAHPDY 99 (814)
T ss_dssp EEEEEET-------------------------------------------------TSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEEeC-------------------------------------------------CCeEEEEECCCCcEEEEEecCCCC
Confidence 7776421 124455555 443 33343 2345
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCcccccccCCCCcceeec-CCC
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKP 254 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp-dg~ 254 (607)
+..+.|+|||++|+....+ ..+.+|++.++ ....... .....+..+.|+| ++.
T Consensus 100 v~~~~~s~~~~~l~~~~~d-------------g~i~vw~~~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQTFE------------GHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp EEEEEECSSSSEEEEEETT-------------SEEEEEEGGGTSEEEEEEE------------CCSSCEEEEEEETTEEE
T ss_pred EEEEEEeCCCCEEEEEcCC-------------CEEEEEECCCCceEEEEEc------------CCCCcEEEEEEEcCCCC
Confidence 6789999999998876532 36888998765 3322211 0011234589999 665
Q ss_pred ceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec-CcccceeeEcC--CCcEEEEEEeccccceEEEEEcC
Q 007338 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCD--DSLALVNETWYKTSQTRTWLVCP 331 (607)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~-~~~~~~~~ws~--Dg~~l~~~~~~~~~~~~l~~~dl 331 (607)
.++.. . ....+.+++. ..+.....+... ...+..+.|+| ++..++.... + ..|.++|+
T Consensus 155 -~l~~~-~-----------~dg~v~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d--g~i~~~d~ 215 (814)
T 3mkq_A 155 -TFASG-C-----------LDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD--D--LTIKIWDY 215 (814)
T ss_dssp -EEEEE-E-----------TTSEEEEEET--TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT--T--SEEEEEET
T ss_pred -EEEEE-e-----------CCCeEEEEEC--CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC--C--CEEEEEEC
Confidence 22221 1 1124555553 122122233222 24567889998 8877666432 2 36777788
Q ss_pred CCCCCCceEeee---ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 332 GSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 332 ~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.++ .....+. ..+.. +.|+|+|+.++...
T Consensus 216 ~~~--~~~~~~~~~~~~v~~---------~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 216 QTK--SCVATLEGHMSNVSF---------AVFHPTLPIIISGS 247 (814)
T ss_dssp TTT--EEEEEEECCSSCEEE---------EEECSSSSEEEEEE
T ss_pred CCC--cEEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 763 2222121 11222 78999999776654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.6e-06 Score=89.26 Aligned_cols=220 Identities=11% Similarity=0.103 Sum_probs=120.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee---ecccCCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPD 82 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~---~lt~~~~ 82 (607)
.+.|.++.. ....+.+++... .+...+|||||++||-... ...|.++|+.+++.. .+..+..
T Consensus 40 ~v~l~~~~~---~~~~~~~~~h~~--~v~~~~~spdg~~lasg~~----------d~~v~lWd~~~~~~~~~~~~~~~~~ 104 (611)
T 1nr0_A 40 SVYTVPVGS---LTDTEIYTEHSH--QTTVAKTSPSGYYCASGDV----------HGNVRIWDTTQTTHILKTTIPVFSG 104 (611)
T ss_dssp EEEEEETTC---SSCCEEECCCSS--CEEEEEECTTSSEEEEEET----------TSEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEecCCC---cccCeEecCCCC--ceEEEEECCCCcEEEEEeC----------CCCEEEeECCCCcceeeEeecccCC
Confidence 466777751 334444543332 5889999999999887653 246778898765432 2222222
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+..+.|+||++.++....... ....++++
T Consensus 105 -----~v~~v~fs~dg~~l~~~~~~~~---------------------------------------------~~~~v~~w 134 (611)
T 1nr0_A 105 -----PVKDISWDSESKRIAAVGEGRE---------------------------------------------RFGHVFLF 134 (611)
T ss_dssp -----CEEEEEECTTSCEEEEEECCSS---------------------------------------------CSEEEEET
T ss_pred -----ceEEEEECCCCCEEEEEECCCC---------------------------------------------ceeEEEEe
Confidence 2678999999887776421100 01233333
Q ss_pred eCCCCeeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 163 SLDGTAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 163 ~~~g~~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+.......+.. ...+..++|+||+..++++... ...+.+||..+++...... +-.
T Consensus 135 d~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~------------D~~v~lwd~~~~~~~~~l~------------~H~ 190 (611)
T 1nr0_A 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVAIFEGPPFKFKSTFG------------EHT 190 (611)
T ss_dssp TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET------------TSCEEEEETTTBEEEEEEC------------CCS
T ss_pred eCCCCcceecCCCCCceEEEECCCCCeEEEEEeC------------CCeEEEEECCCCeEeeeec------------ccc
Confidence 32112222322 2356789999999864444332 1368889987765433211 001
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee-------ecCcccceeeEcCCCcEEE
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALV 314 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~-------~~~~~~~~~~ws~Dg~~l~ 314 (607)
..+..++|||||+. |+ ... .+ ..+.+++. .+|.....+. .+...+..++|+|||..|+
T Consensus 191 ~~V~~v~fspdg~~-la--s~s--~D--------~~i~lwd~--~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 191 KFVHSVRYNPDGSL-FA--STG--GD--------GTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp SCEEEEEECTTSSE-EE--EEE--TT--------SCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CceEEEEECCCCCE-EE--EEE--CC--------CcEEEEEC--CCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 22346899999982 21 111 11 23444543 2221112221 2344577899999999887
Q ss_pred EEEeccccceEEEEEcCCC
Q 007338 315 NETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 315 ~~~~~~~~~~~l~~~dl~~ 333 (607)
.... ++ .+.+.|+.+
T Consensus 256 s~s~--D~--~v~lWd~~~ 270 (611)
T 1nr0_A 256 SASA--DK--TIKIWNVAT 270 (611)
T ss_dssp EEET--TS--EEEEEETTT
T ss_pred EEeC--CC--eEEEEeCCC
Confidence 6542 23 344557766
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-06 Score=86.56 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=80.8
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
..+.++++++.++... ....|+++|+++++..+....... .....+.|+||++.++.+..
T Consensus 3 ~g~~~~~~~~~~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~------- 62 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTN----------YPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNN------- 62 (349)
T ss_dssp -CCCCCTTCEEEEEEE----------TTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEET-------
T ss_pred ccccccCCCEEEEEeC----------CCCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeC-------
Confidence 3566777776543332 246899999999987544433220 01467899999886665420
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCCCC-------ceeeeeeCC
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA-------VYTAVEPSP 184 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~-------~~~~~~~Sp 184 (607)
....|+++++ +++.. .+.... ....+.|||
T Consensus 63 -----------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 63 -----------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 101 (349)
T ss_dssp -----------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred -----------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence 0135566666 44322 222111 135789999
Q ss_pred CCceEEEEEccCC---CccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 185 DQKYVLITSMHRP---YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 185 Dg~~i~~~~~~~~---~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
||++|++...... ..+.. ....|++||+++++....... + .....+..+.|+|||+
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~~~~~~~---------~-~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRT---------F-PMPRQVYLMRAADDGS 160 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEE----CCCEEEEEEGGGGGGBCCSEE---------E-ECCSSCCCEEECTTSC
T ss_pred CCCEEEEEccccccccccccc----CCCeEEEEECCCccccceeee---------c-cCCCcccceeECCCCc
Confidence 9999998864310 00100 024789999987543211100 0 0011234577999998
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-06 Score=88.07 Aligned_cols=182 Identities=10% Similarity=0.123 Sum_probs=109.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|||||+.|+.... ...|.++++.+++.......... .+..+.|+||+++++....
T Consensus 124 ~~~~~~~spdg~~l~~g~~----------dg~v~i~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~lasg~~----- 184 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTH----------VGKVNIFGVESGKKEYSLDTRGK----FILSIAYSPDGKYLASGAI----- 184 (321)
T ss_dssp CCCCEEECTTSSEEEEECT----------TSEEEEEETTTCSEEEEEECSSS----CEEEEEECTTSSEEEEEET-----
T ss_pred cEEEEEECCCCCEEEEEcC----------CCcEEEEEcCCCceeEEecCCCc----eEEEEEECCCCCEEEEEcC-----
Confidence 5778999999999887643 35788889998876433222221 2568899999988776421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCC-CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~-~~~~~~~~SpDg~~ 188 (607)
...|.++|+ +++ ...+... ..+..++|+|||++
T Consensus 185 --------------------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 185 --------------------------------------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL 220 (321)
T ss_dssp --------------------------------------------TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE
T ss_pred --------------------------------------------CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE
Confidence 123344455 343 2233322 34568999999998
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE-eccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
|+..+.+ ..|.+||+.+++... +.. -...+..++|+||++. |+ ....
T Consensus 221 l~s~s~d-------------g~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~-l~--s~s~--- 268 (321)
T 3ow8_A 221 LVTASDD-------------GYIKIYDVQHANLAGTLSG-------------HASWVLNVAFCPDDTH-FV--SSSS--- 268 (321)
T ss_dssp EEEECTT-------------SCEEEEETTTCCEEEEECC-------------CSSCEEEEEECTTSSE-EE--EEET---
T ss_pred EEEEcCC-------------CeEEEEECCCcceeEEEcC-------------CCCceEEEEECCCCCE-EE--EEeC---
Confidence 8776532 368899998665433 221 0112345899999983 21 1111
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEE
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~ 317 (607)
...+.+++. ..+.....+......+..++|+|||..|+...
T Consensus 269 -------D~~v~iwd~--~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 269 -------DKSVKVWDV--GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp -------TSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -------CCcEEEEeC--CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 123555553 22211223333445677899999998877654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-07 Score=91.93 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=40.7
Q ss_pred cccceEEccCCCEEEEEeecCcc-cccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~-~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...+|||||+.++++...... .-.......|.++|+.+++.. .+..... ...+..+.|+|++++|+..
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV---DSKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC---SSCEEEEEECSSSSCEEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec---CCceEEEEECCCCCeEEEE
Confidence 57789999999966665532100 000012357888899887532 2211111 1226689999998877764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-06 Score=100.51 Aligned_cols=292 Identities=7% Similarity=-0.041 Sum_probs=149.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.+.+.++. ++.............+....|||+|+.++.... ...|.++|+.+++..........
T Consensus 820 ~v~~~d~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------dg~v~vwd~~~~~~~~~~~~h~~-- 883 (1249)
T 3sfz_A 820 KVLLFDIH----TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----------QYCVELWNIDSRLKVADCRGHLS-- 883 (1249)
T ss_dssp EEEEEETT----TCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----------SSCEEEEETTTTEEEEEECCCSS--
T ss_pred cEEEEEec----CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceeeecCCCcc--
Confidence 45666665 333333322233346889999999999877643 35688889998875433222221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCC------CccC-----------CCCCe-eeec----------CCcccc--cc
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPK------KTMV-----------PLGPK-IQSN----------EQKNII--IS 135 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~------~~~~-----------~~~~~-~~~~----------~~g~~~--~~ 135 (607)
.+..+.|+|+++.++....++.-..-. .... +.... .... ..+... ..
T Consensus 884 --~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1249)
T 3sfz_A 884 --WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE 961 (1249)
T ss_dssp --CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC
T ss_pred --ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEccc
Confidence 266889999988777654332100000 0000 00000 0000 000000 00
Q ss_pred ccccccccCccccccee-eeccceEEEEeC-CCCe-eecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccE
Q 007338 136 RMTDNLLKDEYDESLFD-YYTTAQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKV 211 (607)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~g~~-~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l 211 (607)
..+.. +....+..... ....+.+.++++ +++. ..+.. ...+..++|||||++|+..+.+ ..+
T Consensus 962 ~~i~~-~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-------------g~i 1027 (1249)
T 3sfz_A 962 AQVSC-CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVI 1027 (1249)
T ss_dssp SCEEE-EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-------------SBE
T ss_pred CcEEE-EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-------------CEE
Confidence 00000 00001111111 112346667777 4543 33332 2355689999999998876532 368
Q ss_pred EEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCc
Q 007338 212 QVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP 291 (607)
Q Consensus 212 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 291 (607)
.+|++.+++...+.. ....+..+.|+|++. ++ ... ....+.+++. .+|...
T Consensus 1028 ~vwd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~--l~--~~~----------~dg~v~vwd~--~~~~~~ 1078 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQA-------------HQETVKDFRLLQDSR--LL--SWS----------FDGTVKVWNV--ITGRIE 1078 (1249)
T ss_dssp EEEETTTTEEECCBC-------------CSSCEEEEEECSSSE--EE--EEE----------SSSEEEEEET--TTTCCC
T ss_pred EEEECCCCceEEEec-------------CCCcEEEEEEcCCCc--EE--EEE----------CCCcEEEEEC--CCCcee
Confidence 999999886654321 011223578888775 21 111 1234566664 344334
Q ss_pred eeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEE
Q 007338 292 EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIA 369 (607)
Q Consensus 292 ~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~ 369 (607)
..+......+..++|+|||..++.... ++ .+.++|+.+++ ....+.. ..+.. +.|+|||+.++.
T Consensus 1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~--d~--~v~iwd~~~~~-~~~~l~~h~~~v~~---------~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISSDATKFSSTSA--DK--TAKIWSFDLLS-PLHELKGHNGCVRC---------SAFSLDGILLAT 1144 (1249)
T ss_dssp EEEECCSSCCCCEEECSSSSSCEEECC--SS--CCCEECSSSSS-CSBCCCCCSSCEEE---------EEECSSSSEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEEcC--CC--cEEEEECCCcc-eeeeeccCCCcEEE---------EEECCCCCEEEE
Confidence 445455566788999999987666432 22 35556776631 1222221 11222 789999998776
Q ss_pred Eee
Q 007338 370 KIK 372 (607)
Q Consensus 370 ~~~ 372 (607)
...
T Consensus 1145 ~~~ 1147 (1249)
T 3sfz_A 1145 GDD 1147 (1249)
T ss_dssp EET
T ss_pred EeC
Confidence 543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-06 Score=88.17 Aligned_cols=110 Identities=6% Similarity=0.050 Sum_probs=70.4
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
....+|||||++|+.... ...|+++|+.+++..+...... ......|++++++++....
T Consensus 59 ~~~~~~s~~g~~l~~~~~----------d~~v~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~------ 117 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARL----------DGHDFLFNTIIRDGSKMLKRAD-----YTAVDTAKLQMRRFILGTT------ 117 (420)
T ss_dssp CTTCEEEEEETTEEEEEE----------TTEEEEEECCSEETTTTSCSCC-----EEEEEEECSSSCEEEEEET------
T ss_pred ccceeeeecCCeEEEEEc----------CCcEEEEEecccceeeEEecCC-----ceEEEEEecCCCEEEEEEC------
Confidence 347899999999988764 2588999998876544432221 1334567888887776421
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeec-C-CCCceeeeeeCCCCceE
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-G-TPAVYTAVEPSPDQKYV 189 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l-t-~~~~~~~~~~SpDg~~i 189 (607)
...|.++++ +++.... . ....+..++|+||+++|
T Consensus 118 -------------------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 154 (420)
T 3vl1_A 118 -------------------------------------------EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL 154 (420)
T ss_dssp -------------------------------------------TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE
T ss_pred -------------------------------------------CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE
Confidence 123344455 3433332 2 23456789999999988
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
+..+.+ ..|.+||+.++
T Consensus 155 ~s~s~d-------------~~i~iwd~~~~ 171 (420)
T 3vl1_A 155 ISSSQD-------------MQLKIWSVKDG 171 (420)
T ss_dssp EEEETT-------------SEEEEEETTTC
T ss_pred EEEeCC-------------CeEEEEeCCCC
Confidence 876532 36889998765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.2e-06 Score=84.80 Aligned_cols=208 Identities=10% Similarity=0.027 Sum_probs=118.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
......|+|||++||.... ...|.++|+.+++.......... .+..+.|+|++++++....
T Consensus 99 ~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~----- 159 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTT----------EGDIKVLDSNFNLQREIDQAHVS----EITKLKFFPSGEALISSSQ----- 159 (420)
T ss_dssp EEEEEEECSSSCEEEEEET----------TSCEEEECTTSCEEEEETTSSSS----CEEEEEECTTSSEEEEEET-----
T ss_pred ceEEEEEecCCCEEEEEEC----------CCCEEEEeCCCcceeeecccccC----ccEEEEECCCCCEEEEEeC-----
Confidence 4555689999999887653 25788889998887665322222 2678999999887776421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
...|.++++ ++ ....+.. ...+..++|+||++.
T Consensus 160 --------------------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 160 --------------------------------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195 (420)
T ss_dssp --------------------------------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred --------------------------------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence 124555565 44 3344432 345678999999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCc---cc---------ccccCCCCcceeecCCCce
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV---CY---------NSVREGMRSISWRADKPST 256 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~---~~---------~~~~~~~~~~~wspdg~~~ 256 (607)
|+..+.+ ..+.+||+.+++.............+. .+ .........+.|+|+|+.
T Consensus 196 l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~- 261 (420)
T 3vl1_A 196 VLSASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY- 261 (420)
T ss_dssp EEEEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-
T ss_pred EEEEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-
Confidence 8876532 368899998765544322110000000 00 000122345889999873
Q ss_pred EEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcCCCc-EEEEEEeccccceEEEEEcCCCC
Q 007338 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~Dg~-~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
| .... . ...+.+++. ..+.....+.. ....+..+.|+|++. .|+.... + ..|.++|+.+.
T Consensus 262 l-~~~~-~----------dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--d--g~i~vwd~~~~ 323 (420)
T 3vl1_A 262 V-IAGH-V----------SGVITVHNV--FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE--N--GMLAQWDLRSP 323 (420)
T ss_dssp E-EEEE-T----------TSCEEEEET--TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET--T--SEEEEEETTCT
T ss_pred E-EEEc-C----------CCeEEEEEC--CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC--C--CeEEEEEcCCC
Confidence 2 1111 1 123555553 22211222222 234577899999998 6665432 2 36777788774
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-05 Score=83.84 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc------------eeecccCCCc-------cccccccc
Q 007338 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------------AKPLFESPDI-------CLNAVFGS 91 (607)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~------------~~~lt~~~~~-------~~~~~~~~ 91 (607)
..+....|||||++||.... ...|.++++.+++ ...+..+... .....+..
T Consensus 29 ~~V~~v~~s~~g~~la~g~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDK----------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp GSEEEEEECSSSSEEEEEET----------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred CcEEEEEECCCCCEEEEEcC----------CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEE
Confidence 36889999999999987653 2578888888766 2333322200 00022668
Q ss_pred eEEecCC--eEEEEE
Q 007338 92 FVWVNNS--TLLIFT 104 (607)
Q Consensus 92 ~~Wspd~--~~l~~~ 104 (607)
+.|+|++ .+++..
T Consensus 99 l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECCCCSSSEEEEE
T ss_pred EEEcCCCCcceEEEe
Confidence 9999986 566654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-05 Score=77.72 Aligned_cols=225 Identities=10% Similarity=0.087 Sum_probs=122.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|||||+.|+-.+. ...|.++|+.+++.......... .+..+.|+|++++++....+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~d---- 118 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQ----------DGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD---- 118 (340)
T ss_dssp CEEEEEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECSSS----CEEEEEECTTSSEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEeC----------CCcEEEEECCCCCcceEeecCCc----cEEEEEECCCCCEEEEEeCC----
Confidence 5889999999998876543 24788889988875433222221 25678999998887764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC--C---eeecC-CCCceeeeeeCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--T---AKDFG-TPAVYTAVEPSP 184 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g--~---~~~lt-~~~~~~~~~~Sp 184 (607)
..+.++++ ++ . ...+. ....+..+.|+|
T Consensus 119 ---------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 119 ---------------------------------------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp ---------------------------------------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred ---------------------------------------------CeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 11222222 11 1 11121 223456788898
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
+++ |+..+. ...+.+||+.+++....... -...+..+.|+|+++. ++....
T Consensus 154 ~~~-l~s~s~-------------d~~i~~wd~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~---l~sg~~ 204 (340)
T 1got_B 154 DNQ-IVTSSG-------------DTTCALWDIETGQQTTTFTG------------HTGDVMSLSLAPDTRL---FVSGAC 204 (340)
T ss_dssp TTE-EEEEET-------------TSCEEEEETTTTEEEEEECC------------CSSCEEEEEECTTSSE---EEEEET
T ss_pred CCc-EEEEEC-------------CCcEEEEECCCCcEEEEEcC------------CCCceEEEEECCCCCE---EEEEeC
Confidence 875 544432 13688999987754432210 0112345899999872 111111
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
...+.+++. ..+.....+......+..+.|+|++..|+.... ++ .+.+.|+.+. .....+..
T Consensus 205 ----------d~~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--d~--~v~iwd~~~~--~~~~~~~~ 266 (340)
T 1got_B 205 ----------DASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSD--DA--TCRLFDLRAD--QELMTYSH 266 (340)
T ss_dssp ----------TSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSEEEEEET--TS--CEEEEETTTT--EEEEEECC
T ss_pred ----------CCcEEEEEC--CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC--CC--cEEEEECCCC--cEEEEEcc
Confidence 123555553 222122233334556778999999988776542 23 3555577662 21111111
Q ss_pred -cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 345 -VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.... +...+.|+|+|+.++...
T Consensus 267 ~~~~~-----~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 267 DNIIC-----GITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp TTCCS-----CEEEEEECTTSSEEEEEE
T ss_pred CCccc-----ceEEEEECCCCCEEEEEC
Confidence 0000 001278999999876654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-05 Score=78.49 Aligned_cols=238 Identities=11% Similarity=0.122 Sum_probs=125.7
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.+.+.+... .+....|||||++||-.+. ...|.++|..+++.......... .+..+.|+|++.+
T Consensus 57 ~~~l~gH~~--~V~~~~~s~d~~~l~s~s~----------Dg~v~vWd~~~~~~~~~~~~~~~----~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 57 RRTLKGHGN--KVLCMDWCKDKRRIVSSSQ----------DGKVIVWDSFTTNKEHAVTMPCT----WVMACAYAPSGCA 120 (354)
T ss_dssp EEEEECCSS--CEEEEEECTTSSEEEEEET----------TSEEEEEETTTCCEEEEEECSSS----CCCEEEECTTSSE
T ss_pred EEEecCCCC--eEEEEEECCCCCEEEEEeC----------CCeEEEEECCCCCcceEEecCCC----CEEEEEECCCCCE
Confidence 344544332 5899999999998876543 24678889988765433222221 2568899999988
Q ss_pred EEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC---C---CeeecC-C
Q 007338 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD---G---TAKDFG-T 173 (607)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g---~~~~lt-~ 173 (607)
++....+ +. -.+|.+... + ....+. .
T Consensus 121 lasg~~d----------------------~~-------------------------i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 121 IACGGLD----------------------NK-------------------------CSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp EEEESTT----------------------SE-------------------------EEEEECCCCTTCCSGGGCEEEEEC
T ss_pred EEEeeCC----------------------CC-------------------------EEEEEEeccccccccccceeeecc
Confidence 7764211 00 011111100 0 011111 2
Q ss_pred CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE-eccCCCCCCCCcccccccCCCCcceeecC
Q 007338 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (607)
Q Consensus 174 ~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (607)
...+..+.|+|+++.|+..+.+ ..+.+||+++++... +.. -...+..+.|+|+
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D-------------~~v~lwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGD-------------GTCALWDVESGQLLQSFHG-------------HGADVLCLDLAPS 207 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEEC-------------CSSCEEEEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCeEEEEEcC-------------CCCCeEEEEEEeC
Confidence 2345688999999988877542 378899998775433 221 0111223566664
Q ss_pred CCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCC
Q 007338 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~ 332 (607)
....++..... ...+.+++. ..+.....+......+..++|+|++..|+.... ++ .+.++|+.
T Consensus 208 ~~g~~l~sgs~-----------Dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--D~--~v~lwd~~ 270 (354)
T 2pbi_B 208 ETGNTFVSGGC-----------DKKAMVWDM--RSGQCVQAFETHESDVNSVRYYPSGDAFASGSD--DA--TCRLYDLR 270 (354)
T ss_dssp SSCCEEEEEET-----------TSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TS--CEEEEETT
T ss_pred CCCCEEEEEeC-----------CCeEEEEEC--CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC--CC--eEEEEECC
Confidence 32112222111 123555553 233122233334456778999999988776542 23 34455776
Q ss_pred CCCCCceEeeec-cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 333 SKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 333 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.. ....++.. .... +...+.|+|+|+.++...
T Consensus 271 ~~--~~~~~~~~~~~~~-----~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 271 AD--REVAIYSKESIIF-----GASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp TT--EEEEEECCTTCCS-----CEEEEEECTTSSEEEEEE
T ss_pred CC--cEEEEEcCCCccc-----ceeEEEEeCCCCEEEEEE
Confidence 52 21222211 1000 011277899999776554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-06 Score=93.33 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=124.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
......|||||+.||+... ..+.++++++++.. .++.+.. .+..+.|+||+++++....+
T Consensus 20 ~~~~~~~spdg~~l~~~~~-----------~~v~l~~~~~~~~~~~~~~h~~-----~v~~~~~spdg~~lasg~~d--- 80 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNG-----------TSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVH--- 80 (611)
T ss_dssp CCCCCEECTTSSEEEEEET-----------TEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETT---
T ss_pred ceeEEeeCCCCCEEEeCCC-----------CEEEEecCCCcccCeEecCCCC-----ceEEEEECCCCcEEEEEeCC---
Confidence 5677899999999998652 37888899876653 4433332 26789999999988874211
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC--e-eecC-CCCceeeeeeCCC
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--A-KDFG-TPAVYTAVEPSPD 185 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~-~~lt-~~~~~~~~~~SpD 185 (607)
..+.++|+ +++ . ..+. ....+..++||||
T Consensus 81 ----------------------------------------------~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 81 ----------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp ----------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------CCEEEeECCCCcceeeEeecccCCceEEEEECCC
Confidence 12222333 221 1 1121 2235678999999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecC
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~ 265 (607)
|++|+........ ...+++||... ....+.. -...+..+.|+|+++..|+- ..
T Consensus 115 g~~l~~~~~~~~~---------~~~v~~wd~~~-~~~~l~g-------------h~~~v~~v~f~p~~~~~l~s--~s-- 167 (611)
T 1nr0_A 115 SKRIAAVGEGRER---------FGHVFLFDTGT-SNGNLTG-------------QARAMNSVDFKPSRPFRIIS--GS-- 167 (611)
T ss_dssp SCEEEEEECCSSC---------SEEEEETTTCC-BCBCCCC-------------CSSCEEEEEECSSSSCEEEE--EE--
T ss_pred CCEEEEEECCCCc---------eeEEEEeeCCC-CcceecC-------------CCCCceEEEECCCCCeEEEE--Ee--
Confidence 9999887643210 12577777422 1111110 01223458999998743321 11
Q ss_pred CCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee-ec
Q 007338 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-DR 344 (607)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~-~~ 344 (607)
.+ ..+.+++. ..+.....+..+...+..++|+|||..|+.... ++ .+.+.|+.++ +....+ ..
T Consensus 168 ~D--------~~v~lwd~--~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~--D~--~i~lwd~~~g--~~~~~~~~~ 231 (611)
T 1nr0_A 168 DD--------NTVAIFEG--PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG--DG--TIVLYNGVDG--TKTGVFEDD 231 (611)
T ss_dssp TT--------SCEEEEET--TTBEEEEEECCCSSCEEEEEECTTSSEEEEEET--TS--CEEEEETTTC--CEEEECBCT
T ss_pred CC--------CeEEEEEC--CCCeEeeeeccccCceEEEEECCCCCEEEEEEC--CC--cEEEEECCCC--cEeeeeccc
Confidence 11 23444443 111011233334456778999999998776542 23 3445576653 222212 10
Q ss_pred -----cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 345 -----VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 345 -----~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.....+ ..+.|+|||+.|+....
T Consensus 232 ~~~~~~h~~~V-----~~v~~spdg~~l~s~s~ 259 (611)
T 1nr0_A 232 SLKNVAHSGSV-----FGLTWSPDGTKIASASA 259 (611)
T ss_dssp TSSSCSSSSCE-----EEEEECTTSSEEEEEET
T ss_pred cccccccCCCE-----EEEEECCCCCEEEEEeC
Confidence 000101 12789999998765543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-05 Score=84.60 Aligned_cols=253 Identities=15% Similarity=0.133 Sum_probs=131.6
Q ss_pred CCCcccceEEcc----CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc-------cccccceEEecC
Q 007338 29 DGAKINFVSWSP----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL-------NAVFGSFVWVNN 97 (607)
Q Consensus 29 ~~~~~~~~~~SP----DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~-------~~~~~~~~Wspd 97 (607)
.+.......||| ||++|+..... ...|.++|.++++..+......... ...+..+.++|+
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~---------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYW---------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEE---------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEcc---------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 344678899999 99987665422 3578899999988754432211000 001345677777
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-ee--ecCC
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AK--DFGT 173 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~--~lt~ 173 (607)
++.++++.. ....|+++++ +++ .. .+..
T Consensus 291 ~~~~~vs~~------------------------------------------------~~g~i~vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 291 HPEFIVNVK------------------------------------------------ETGKVLLVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp SSEEEEEET------------------------------------------------TTTEEEEEECTTSSSCEEEEEEC
T ss_pred CCEEEEEEC------------------------------------------------CCCeEEEEEecCCCcceeEEecc
Confidence 655444310 1245666666 332 11 3323
Q ss_pred CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCccee-ecC
Q 007338 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISW-RAD 252 (607)
Q Consensus 174 ~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w-spd 252 (607)
......+.|||||++++.+... ...|.+||++++++....... ..| .. .+...| +|+
T Consensus 323 ~~~~~~~~~spdg~~l~va~~~------------~~~v~v~D~~tg~l~~~i~~g---~~p------h~-g~g~~~~~p~ 380 (543)
T 1nir_A 323 APFLHDGGWDSSHRYFMTAANN------------SNKVAVIDSKDRRLSALVDVG---KTP------HP-GRGANFVHPK 380 (543)
T ss_dssp CSSCCCEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEECS---SSB------CC-TTCEEEEETT
T ss_pred CcCccCceECCCCCEEEEEecC------------CCeEEEEECCCCeEEEeeccC---CCC------CC-CCCcccCCCC
Confidence 3345678999999999877543 236889999988765533210 000 00 022334 566
Q ss_pred CCceEEEEEeecCCCCccccCCCceEEeccCCCCC-----CCCceeeeecCcccceeeEcCCCcEEEEEEeccc---cce
Q 007338 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-----GEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT---SQT 324 (607)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~---~~~ 324 (607)
+.. +|+... .+ .+.+.+++..+.. +...+.+.........+.++|||+.|+....... ...
T Consensus 381 ~g~--~~~s~~-~~--------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~ 449 (543)
T 1nir_A 381 YGP--VWSTSH-LG--------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 449 (543)
T ss_dssp TEE--EEEEEB-SS--------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred Ccc--EEEecc-CC--------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence 442 233211 01 1234455432210 1111223322333456889999998766531111 124
Q ss_pred EEEEEcCCCCCCCceEeeeccccccccCCCC--CCeeeCCCCCEEEEEee
Q 007338 325 RTWLVCPGSKDVAPRVLFDRVFENVYSDPGS--PMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 325 ~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~dg~~~~~~~~ 372 (607)
.|.++|+++.+...+.|.-..+.. ....+. -.+.+++||+.+++...
T Consensus 450 ~v~v~d~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 450 SVAVFDLKNLDAKYQVLPIAEWAD-LGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp CEEEEETTCTTSCCEEECHHHHHC-CCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred eEEEEECCCCCCCeEEeechhhcc-cCCCCCceEeccCCCCCCEEEEEee
Confidence 788899988532223331000000 000010 01778999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-05 Score=79.68 Aligned_cols=197 Identities=12% Similarity=0.097 Sum_probs=107.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee-cccCCCcc-------------ccccccceEEecC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDIC-------------LNAVFGSFVWVNN 97 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~-------------~~~~~~~~~Wspd 97 (607)
.+...+|||||++||.... ..+.++++.+|+... +....... ....+..+.|+||
T Consensus 66 ~V~~v~fspdg~~la~g~~-----------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN-----------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CCCEEEECTTSSEEEEECB-----------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred EEEEEEECCCCCEEEEEcC-----------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 5889999999999987542 245667888876533 32111000 0001447789999
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eecCC-C
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT-P 174 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~lt~-~ 174 (607)
+++++.... ...|.++++ +++. ..+.. .
T Consensus 135 g~~l~s~~~-------------------------------------------------d~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 135 GKFLATGAE-------------------------------------------------DRLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp SSEEEEEET-------------------------------------------------TSCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEcC-------------------------------------------------CCeEEEEECCCCcEEEEEccCC
Confidence 887776421 123334455 3332 23332 2
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeec-CC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DK 253 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp-dg 253 (607)
..+..++|+|||++|+..+.+ ..+.+||+.+++....... ......+.|+| ||
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSI-------------EDGVTTVAVSPGDG 219 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEEC-------------SSCEEEEEECSTTC
T ss_pred CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEEc-------------CCCcEEEEEECCCC
Confidence 356789999999998876532 3688999988765443210 12234588898 67
Q ss_pred CceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee-------eecCcccceeeEcCCCcEEEEEEeccccceEE
Q 007338 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (607)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l-------~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l 326 (607)
+. ++ ... .. ..+.+++. ..+.....+ ......+..+.|+|||..|+.... ++ .+
T Consensus 220 ~~-l~-~~s-~d----------~~v~iwd~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--d~--~v 280 (393)
T 1erj_A 220 KY-IA-AGS-LD----------RAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL--DR--SV 280 (393)
T ss_dssp CE-EE-EEE-TT----------SCEEEEET--TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET--TS--EE
T ss_pred CE-EE-EEc-CC----------CcEEEEEC--CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC--CC--EE
Confidence 62 21 111 11 22344442 122111111 122345678999999998776542 23 34
Q ss_pred EEEcCCC
Q 007338 327 WLVCPGS 333 (607)
Q Consensus 327 ~~~dl~~ 333 (607)
.+.|+..
T Consensus 281 ~~wd~~~ 287 (393)
T 1erj_A 281 KLWNLQN 287 (393)
T ss_dssp EEEEC--
T ss_pred EEEECCC
Confidence 4556554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-06 Score=85.61 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=123.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc---eeecccCCCccccccccceEEecCCeEEEEEecCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~ 108 (607)
.+....|||||+.||.... ...|.++|+.+++ ...+..+.. .+..+.|+|++++++....+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d- 73 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN----------NHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTD- 73 (372)
T ss_dssp CCCEEEECTTSSEEEEECS----------SSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETT-
T ss_pred CeEEEEECCCCCEEEEEeC----------CCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCC-
Confidence 6889999999999887643 3578888998885 333432222 26789999998877764210
Q ss_pred CCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee---ecC-CCCceeeeeeC
Q 007338 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFG-TPAVYTAVEPS 183 (607)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~lt-~~~~~~~~~~S 183 (607)
..|.++++ +++.. .+. ....+..+.|+
T Consensus 74 ------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 74 ------------------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ------------------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ------------------------------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 12223333 33211 111 22356789999
Q ss_pred CCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee----EEeccCCCCCCCCcccccccCCCCcceeecCCCceEEE
Q 007338 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV----RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (607)
Q Consensus 184 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~ 259 (607)
||+++|+....+ ..+.+|++..+.. ..+.. + ....+..+.|+|+++. ++
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~-~-----------~~~~i~~~~~~~~~~~-l~- 158 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKK-P-----------IRSTVLSLDWHPNSVL-LA- 158 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECT-T-----------CCSCEEEEEECTTSSE-EE-
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeec-c-----------cCCCeeEEEEcCCCCE-EE-
Confidence 999998887642 2577788776542 22211 0 0112345899999873 21
Q ss_pred EEeecCCCCccccCCCceEEeccCC----------------CCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccc
Q 007338 260 VEAQDRGDANVEVSPRDIIYTQPAE----------------PAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (607)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 323 (607)
... .. ..+.+++.. ...+.....+......+..+.|+|++..|+.... +
T Consensus 159 ~~~-~d----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d-- 223 (372)
T 1k8k_C 159 AGS-CD----------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH--D-- 223 (372)
T ss_dssp EEE-TT----------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--T--
T ss_pred EEc-CC----------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC--C--
Confidence 111 11 223344320 0011111222233445778999999987766542 2
Q ss_pred eEEEEEcCCCCCCCceEeeec---cccccccCCCCCCeeeCCCCCEEEEE
Q 007338 324 TRTWLVCPGSKDVAPRVLFDR---VFENVYSDPGSPMMTRTSTGTNVIAK 370 (607)
Q Consensus 324 ~~l~~~dl~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~dg~~~~~~ 370 (607)
..|.++|+.++ +....+.. .+.. +.|+|+|+.++..
T Consensus 224 ~~i~i~d~~~~--~~~~~~~~~~~~v~~---------~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 224 STVCLADADKK--MAVATLASETLPLLA---------VTFITESSLVAAG 262 (372)
T ss_dssp TEEEEEEGGGT--TEEEEEECSSCCEEE---------EEEEETTEEEEEE
T ss_pred CEEEEEECCCC--ceeEEEccCCCCeEE---------EEEecCCCEEEEE
Confidence 25777787763 22222211 1222 7889998865543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-06 Score=87.71 Aligned_cols=256 Identities=12% Similarity=0.121 Sum_probs=131.9
Q ss_pred eeEEEeccCCCCCCCe-eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC----C-ceeeccc
Q 007338 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----G-EAKPLFE 79 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~----g-~~~~lt~ 79 (607)
.|.|.++. +++. +.+..+.....+....|||||+.|+.... ...|.++++.+ . ....+..
T Consensus 46 ~v~iw~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~v~vw~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 46 SLELWSLL----AADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD----------NGSLELYSTNEANNAINSMARFSN 111 (416)
T ss_dssp CCEEEESS----SGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES----------SSCEEEECCSSTTSCCCEEEECCC
T ss_pred eEEEEEcc----CCCCCcEEEEEecCCceEEEEECCCCCeEEEEcc----------CCeEEEeecccccccccchhhccC
Confidence 37777876 3321 12222333446899999999999887653 24677778876 2 2334432
Q ss_pred CCCccccccccceEEecC-CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccce
Q 007338 80 SPDICLNAVFGSFVWVNN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (607)
Q Consensus 80 ~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (607)
+.. .+..+.|+|+ +++++....+ + .
T Consensus 112 h~~-----~v~~~~~~~~~~~~l~s~~~d----------------------g---------------------------~ 137 (416)
T 2pm9_A 112 HSS-----SVKTVKFNAKQDNVLASGGNN----------------------G---------------------------E 137 (416)
T ss_dssp SSS-----CCCEEEECSSSTTBEEEECSS----------------------S---------------------------C
T ss_pred Ccc-----ceEEEEEcCCCCCEEEEEcCC----------------------C---------------------------e
Confidence 222 2678999998 7777764211 0 1
Q ss_pred EEEEeC-CCC-------eeec---C-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEecc
Q 007338 159 LVLGSL-DGT-------AKDF---G-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (607)
Q Consensus 159 l~~~~~-~g~-------~~~l---t-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (607)
|.++++ +++ ...+ . ....+..++|+|++..++++... ...|.+||+.+++......
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS------------SNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS------------SSCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC------------CCCEEEEECCCCCcceEEe
Confidence 111222 111 0111 1 12245689999995545444332 2368999998775544322
Q ss_pred CCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCC-Cceeee-ecCccccee
Q 007338 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILH-KLDLRFRSV 304 (607)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~-~~~~~~~~~ 304 (607)
..... .+....+..+.|+|++...++.. ..++.+ ..+.+++. ..+. ....+. .....+..+
T Consensus 206 ~~~~~------~~~~~~v~~~~~~~~~~~~l~~~-~~d~~~--------~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 206 YTSPN------SGIKQQLSVVEWHPKNSTRVATA-TGSDND--------PSILIWDL--RNANTPLQTLNQGHQKGILSL 268 (416)
T ss_dssp CCCCS------SCCCCCEEEEEECSSCTTEEEEE-ECCSSS--------CCCCEEET--TSTTSCSBCCCSCCSSCEEEE
T ss_pred ccccc------cccCCceEEEEECCCCCCEEEEE-ECCCCC--------ceEEEEeC--CCCCCCcEEeecCccCceeEE
Confidence 11000 00011234599999987544332 222110 02334443 1111 122232 344567789
Q ss_pred eEcC-CCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCC-CEEEEE
Q 007338 305 SWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG-TNVIAK 370 (607)
Q Consensus 305 ~ws~-Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg-~~~~~~ 370 (607)
.|+| ++..|+.... + ..|.++|+.++ +....+... .... ..+.|+|++ +.++..
T Consensus 269 ~~s~~~~~~l~s~~~--d--g~v~~wd~~~~--~~~~~~~~~-~~~v-----~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGR--D--NTVLLWNPESA--EQLSQFPAR-GNWC-----FKTKFAPEAPDLFACA 324 (416)
T ss_dssp EECSSCSSCEEEEES--S--SEEEEECSSSC--CEEEEEECS-SSCC-----CCEEECTTCTTEEEEC
T ss_pred EeCCCCCCeEEEEeC--C--CCEEEeeCCCC--ccceeecCC-CCce-----EEEEECCCCCCEEEEE
Confidence 9999 7877666542 2 35777788773 222222111 1111 128899998 554443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-05 Score=83.75 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=136.4
Q ss_pred eEEEeccCCCCCCC-eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 7 IGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
|.|-++. +++ .+.+.... ..+....|+|||+.|+-.+. + ..|.++|+.+++..+.......
T Consensus 132 i~vwd~~----~~~~~~~l~~h~--~~V~~v~~~~~~~~l~sgs~--------D--~~i~iwd~~~~~~~~~~~~h~~-- 193 (410)
T 1vyh_C 132 IKVWDYE----TGDFERTLKGHT--DSVQDISFDHSGKLLASCSA--------D--MTIKLWDFQGFECIRTMHGHDH-- 193 (410)
T ss_dssp EEEEETT----TCCCCEEECCCS--SCEEEEEECTTSSEEEEEET--------T--SCCCEEETTSSCEEECCCCCSS--
T ss_pred EEEEECC----CCcEEEEEeccC--CcEEEEEEcCCCCEEEEEeC--------C--CeEEEEeCCCCceeEEEcCCCC--
Confidence 5666765 444 33444322 25889999999998766543 2 4577779988875433222221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
.+..+.|+|++++++.... ...+.++|+
T Consensus 194 --~V~~v~~~p~~~~l~s~s~-------------------------------------------------D~~i~~wd~~ 222 (410)
T 1vyh_C 194 --NVSSVSIMPNGDHIVSASR-------------------------------------------------DKTIKMWEVQ 222 (410)
T ss_dssp --CEEEEEECSSSSEEEEEET-------------------------------------------------TSEEEEEETT
T ss_pred --CEEEEEEeCCCCEEEEEeC-------------------------------------------------CCeEEEEECC
Confidence 2678999999887776421 123444455
Q ss_pred CCC-eeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 ~g~-~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
++. ...+.. ...+..+.++|||+.|+..+.+ ..+.+||+.+++....... -..
T Consensus 223 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D-------------~~v~vwd~~~~~~~~~~~~------------h~~ 277 (410)
T 1vyh_C 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELRE------------HRH 277 (410)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECC------------CSS
T ss_pred CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCceeeEecC------------CCc
Confidence 443 233332 2345678999999988877542 3688999987654432110 011
Q ss_pred CCCcceeecCCCc------------------eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCccccee
Q 007338 243 GMRSISWRADKPS------------------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSV 304 (607)
Q Consensus 243 ~~~~~~wspdg~~------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~ 304 (607)
.+..+.|+|++.. .++... .....+.+++. ..|.....+......+..+
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-----------s~D~~i~iwd~--~~~~~~~~~~~h~~~v~~v 344 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-----------SRDKTIKMWDV--STGMCLMTLVGHDNWVRGV 344 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-----------ETTSEEEEEET--TTTEEEEEEECCSSCEEEE
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEE-----------eCCCeEEEEEC--CCCceEEEEECCCCcEEEE
Confidence 1234777776431 111111 11234566664 2221222333344557789
Q ss_pred eEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 305 ~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.|+|+|..|+.... ++ .|.+.|+.+++ ....+.. ..+.. +.|+|++..|+...
T Consensus 345 ~~~~~g~~l~s~s~--D~--~i~vwd~~~~~-~~~~~~~h~~~v~~---------l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 345 LFHSGGKFILSCAD--DK--TLRVWDYKNKR-CMKTLNAHEHFVTS---------LDFHKTAPYVVTGS 399 (410)
T ss_dssp EECSSSSCEEEEET--TT--EEEEECCTTSC-CCEEEECCSSCEEE---------EEECSSSSCEEEEE
T ss_pred EEcCCCCEEEEEeC--CC--eEEEEECCCCc-eEEEEcCCCCcEEE---------EEEcCCCCEEEEEe
Confidence 99999988776542 23 46666776632 2333322 12333 78999988765443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=89.48 Aligned_cols=229 Identities=8% Similarity=0.070 Sum_probs=116.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|||||+.|+ .+. + ..|.++|+.+++...+...........+..+.|+||+++|+....+
T Consensus 96 ~V~~~~~s~d~~~l~-~s~--------d--g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---- 160 (357)
T 4g56_B 96 GVTDVAWVSEKGILV-ASD--------S--GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---- 160 (357)
T ss_dssp CEEEEEEETTTEEEE-EET--------T--SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CEEEEEEcCCCCEEE-EEC--------C--CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 478899999997553 221 2 3578889988765332211100111236688999999887764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
..|.++|+ +++ ...+.. ...+..++|+|+++.
T Consensus 161 ---------------------------------------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 161 ---------------------------------------------FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 12333444 343 223322 235668899999876
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
++++... ...|.+||+.+++........ .....+..+.|+|++...++-. .
T Consensus 196 ~~~s~~~------------dg~v~~wd~~~~~~~~~~~~~----------~~~~~v~~v~~sp~~~~~la~g--~----- 246 (357)
T 4g56_B 196 IFLSCGE------------DGRILLWDTRKPKPATRIDFC----------ASDTIPTSVTWHPEKDDTFACG--D----- 246 (357)
T ss_dssp CEEEEET------------TSCEEECCTTSSSCBCBCCCT----------TCCSCEEEEEECTTSTTEEEEE--E-----
T ss_pred eeeeecc------------CCceEEEECCCCceeeeeeec----------cccccccchhhhhcccceEEEe--e-----
Confidence 6555432 136889999876433211100 0001123589999876543321 1
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE-EEEEEeccccceEEEEEcCCCCCCCceEeee--cc
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RV 345 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~-l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~ 345 (607)
....+.+++. ..+.....+......+..++|+|++.. |+... . ++ .|.+.|+.++ +...... ..
T Consensus 247 -----~d~~i~~wd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~-D~--~i~iwd~~~~--~~~~~~~H~~~ 313 (357)
T 4g56_B 247 -----ETGNVSLVNI--KNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-E-DC--TVAVLDADFS--EVFRDLSHRDF 313 (357)
T ss_dssp -----SSSCEEEEES--SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-T-TS--CEEEECTTSC--EEEEECCCSSC
T ss_pred -----cccceeEEEC--CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-C-CC--EEEEEECCCC--cEeEECCCCCC
Confidence 1123455553 222223334344456778999999854 55433 1 22 4566688773 2222222 11
Q ss_pred ccccccCCCCCCeeeCC-CCCEEEEEe
Q 007338 346 FENVYSDPGSPMMTRTS-TGTNVIAKI 371 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~-dg~~~~~~~ 371 (607)
+.. +.|+| |++.|+-..
T Consensus 314 V~~---------vafsP~d~~~l~s~s 331 (357)
T 4g56_B 314 VTG---------VAWSPLDHSKFTTVG 331 (357)
T ss_dssp EEE---------EEECSSSTTEEEEEE
T ss_pred EEE---------EEEeCCCCCEEEEEc
Confidence 332 78998 677655443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=9e-06 Score=84.97 Aligned_cols=235 Identities=10% Similarity=0.091 Sum_probs=120.2
Q ss_pred cccceEEccC-CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCCC
Q 007338 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-d~~~l~~~~~~~~ 109 (607)
.++...|+|+ ++.||.-.. ...|.+||+.+++...+.... +....+..+.|+| |+.+|+....+
T Consensus 121 ~V~~l~~~P~~~~~lasGs~----------dg~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~s~s~D-- 186 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSK----------GGDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQFYASSME-- 186 (435)
T ss_dssp CEEEEEECSSCTTCEEEEET----------TSCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTEEEEECSS--
T ss_pred CEEEEEEeCCCCCEEEEEeC----------CCEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCEEEEEeCC--
Confidence 5889999995 556655432 257888899877644332211 1112367899998 57777764211
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCC----CceeeeeeCC
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPSP 184 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~----~~~~~~~~Sp 184 (607)
..|.++|+.+ ..+.+... ..+..++|+|
T Consensus 187 -----------------------------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 187 -----------------------------------------------GTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp -----------------------------------------------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred -----------------------------------------------CEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 1122334422 22222111 1345789999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
|++.|+.... ...|.+||+++..+..+.. -...+..+.|+|+++..++-. .
T Consensus 220 ~~~~l~~g~~-------------dg~i~~wd~~~~~~~~~~~-------------h~~~v~~v~~~p~~~~~~~s~-s-- 270 (435)
T 4e54_B 220 SSRMVVTGDN-------------VGNVILLNMDGKELWNLRM-------------HKKKVTHVALNPCCDWFLATA-S-- 270 (435)
T ss_dssp TTTEEEEECS-------------SSBEEEEESSSCBCCCSBC-------------CSSCEEEEEECTTCSSEEEEE-E--
T ss_pred CCCEEEEEeC-------------CCcEeeeccCcceeEEEec-------------ccceEEeeeecCCCceEEEEe-c--
Confidence 9998887643 2368999998765433321 012234589999988543221 1
Q ss_pred CCCCccccCCCceEEeccCCCCCCC-CceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~ 343 (607)
.+ ..+.+++....... ...........+..++|+|||..|+.... ++ .|.++|+.+.+ ....+..
T Consensus 271 -~d--------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~--D~--~i~iwd~~~~~-~~~~~~~ 336 (435)
T 4e54_B 271 -VD--------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ--KS--EIRVYSASQWD-CPLGLIP 336 (435)
T ss_dssp -TT--------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES--SS--CEEEEESSSSS-SEEEECC
T ss_pred -Cc--------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC--CC--EEEEEECCCCc-cceEEec
Confidence 11 12233332001100 11111123345678899999998776542 23 45556776632 2222221
Q ss_pred ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.... ...........|++++..++...
T Consensus 337 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 337 HPHR-HFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp CCCC-CCSSSCCCBCEECSSSSCEEEEC
T ss_pred cccc-ccccceeEEEEEcCCCCEEEEEE
Confidence 1100 00000111256788877666544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-05 Score=81.42 Aligned_cols=222 Identities=12% Similarity=0.096 Sum_probs=122.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|||+.|+..+. ...|.++|+.+++..+....... .+..+.|+|++++++....+
T Consensus 110 ~V~~~~~~p~~~~l~s~s~----------Dg~i~vwd~~~~~~~~~l~~h~~----~V~~v~~~~~~~~l~sgs~D---- 171 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE----------DATIKVWDYETGDFERTLKGHTD----SVQDISFDHSGKLLASCSAD---- 171 (410)
T ss_dssp CEEEEEECSSSSEEEEEES----------SSCEEEEETTTCCCCEEECCCSS----CEEEEEECTTSSEEEEEETT----
T ss_pred cEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEeccCC----cEEEEEEcCCCCEEEEEeCC----
Confidence 5788999999998776553 24788889998876433222221 26788999998887764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~lt~-~~~~~~~~~SpDg~~ 188 (607)
+ .|.++++ +++. ..+.. ...+..+.|+|+|++
T Consensus 172 ------------------~---------------------------~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 172 ------------------M---------------------------TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp ------------------S---------------------------CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred ------------------C---------------------------eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 1 1112233 2222 22222 235678999999998
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeE-EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
|+..+.+ ..|.+||+.++... .+.. -...+..+.|+|||+. +.... .
T Consensus 207 l~s~s~D-------------~~i~~wd~~~~~~~~~~~~-------------h~~~v~~~~~~~~g~~--l~s~s-~--- 254 (410)
T 1vyh_C 207 IVSASRD-------------KTIKMWEVQTGYCVKTFTG-------------HREWVRMVRPNQDGTL--IASCS-N--- 254 (410)
T ss_dssp EEEEETT-------------SEEEEEETTTCCEEEEEEC-------------CSSCEEEEEECTTSSE--EEEEE-T---
T ss_pred EEEEeCC-------------CeEEEEECCCCcEEEEEeC-------------CCccEEEEEECCCCCE--EEEEc-C---
Confidence 8776532 37899999876533 2321 0112335788899872 11111 1
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCC--------------------CcEEEEEEeccccceEEE
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD--------------------SLALVNETWYKTSQTRTW 327 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~D--------------------g~~l~~~~~~~~~~~~l~ 327 (607)
...+.+++. ..+.....+......+..+.|+|+ |..|+.... + ..+.
T Consensus 255 -------D~~v~vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--D--~~i~ 321 (410)
T 1vyh_C 255 -------DQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--D--KTIK 321 (410)
T ss_dssp -------TSCEEEEET--TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--T--SEEE
T ss_pred -------CCeEEEEEC--CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--C--CeEE
Confidence 123444443 222112233334455677889886 334544331 2 2466
Q ss_pred EEcCCCCCCCceEeeec--cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 328 LVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 328 ~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+.|+.++. ....+..+ .+.. +.|+|+|+.|+...
T Consensus 322 iwd~~~~~-~~~~~~~h~~~v~~---------v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 322 MWDVSTGM-CLMTLVGHDNWVRG---------VLFHSGGKFILSCA 357 (410)
T ss_dssp EEETTTTE-EEEEEECCSSCEEE---------EEECSSSSCEEEEE
T ss_pred EEECCCCc-eEEEEECCCCcEEE---------EEEcCCCCEEEEEe
Confidence 67877631 11222211 1222 78899998776544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-05 Score=75.22 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=125.6
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.+.+..... .+....|||||+.|+.... ...|.++|+.+++..+....... .+....|+|++++
T Consensus 6 ~~~~~~h~~--~V~~~~fsp~~~~l~s~~~----------dg~v~lWd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 6 KKTFSNRSD--RVKGIDFHPTEPWVLTTLY----------SGRVELWNYETQVEVRSIQVTET----PVRAGKFIARKNW 69 (304)
T ss_dssp EEEEEEECS--CEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS----CEEEEEEEGGGTE
T ss_pred EEeecCCCC--ceEEEEECCCCCEEEEEcC----------CCcEEEEECCCCceeEEeeccCC----cEEEEEEeCCCCE
Confidence 345554333 5899999999999876553 25778889998865433222221 2567899999888
Q ss_pred EEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecC-CCCce
Q 007338 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVY 177 (607)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt-~~~~~ 177 (607)
++.... ...|.++++ +++ ...+. ....+
T Consensus 70 l~s~s~-------------------------------------------------d~~i~vwd~~~~~~~~~~~~h~~~v 100 (304)
T 2ynn_A 70 IIVGSD-------------------------------------------------DFRIRVFNYNTGEKVVDFEAHPDYI 100 (304)
T ss_dssp EEEEET-------------------------------------------------TSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEECC-------------------------------------------------CCEEEEEECCCCcEEEEEeCCCCcE
Confidence 776421 123444455 443 23333 23456
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCcccccccCCCCcceeecCCCce
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (607)
..++|+|++++|+..+.+ ..|.+||+.++ ....... +-...+..+.|+|++...
T Consensus 101 ~~~~~~~~~~~l~sgs~D-------------~~v~lWd~~~~~~~~~~~~------------~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 101 RSIAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQTFE------------GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEECSSSSEEEEEETT-------------SCEEEEEGGGTTEEEEEEC------------CCCSCEEEEEECTTCTTE
T ss_pred EEEEEcCCCCEEEEECCC-------------CeEEEEECCCCcchhhhhc------------ccCCcEEEEEECCCCCCE
Confidence 789999999988766532 36889998765 3332211 001122358899854322
Q ss_pred EEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcC--CCcEEEEEEeccccceEEEEEcCCC
Q 007338 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCD--DSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~--Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
++-. . ....+.+++. ..+.....+.. .......+.|+| ++..|+.... ++ .|.+.|+.+
T Consensus 156 l~sg-s-----------~D~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~--D~--~i~iWd~~~ 217 (304)
T 2ynn_A 156 FASG-C-----------LDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD--DL--TIKIWDYQT 217 (304)
T ss_dssp EEEE-E-----------TTSEEEEEET--TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET--TS--EEEEEETTT
T ss_pred EEEE-e-----------CCCeEEEEEC--CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC--CC--eEEEEeCCC
Confidence 2211 1 1123555553 11111122221 223345567775 5666665532 22 455668776
Q ss_pred CCCCceEeeec--cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 334 KDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 334 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
++ ....+..+ .+.. +.|+|+++.|+...
T Consensus 218 ~~-~~~~~~~h~~~v~~---------~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 218 KS-CVATLEGHMSNVSF---------AVFHPTLPIIISGS 247 (304)
T ss_dssp TE-EEEEEECCSSCEEE---------EEECSSSSEEEEEE
T ss_pred Cc-cceeeCCCCCCEEE---------EEECCCCCEEEEEc
Confidence 31 11222111 1222 67899998665544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.62 E-value=8.9e-05 Score=74.55 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=119.8
Q ss_pred cccceEE-----cc-CCCEEEEEeecCcccccCCCceeEEEEECCCCc-------e-eecccCCCccccccccceEEecC
Q 007338 32 KINFVSW-----SP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------A-KPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 32 ~~~~~~~-----SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~-~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
.+....| +| ||+.|+-.+. + ..|.++|+..++ . ..+..+.. .+..+.|+|+
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~--------D--~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSR--------D--KTVMIWKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEET--------T--SCEEEEEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhheeeEEEeecCCCCCEEEEEcC--------C--CEEEEEECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 4778888 77 8988775543 3 356666776432 1 22322222 2668899999
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecC-CC
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TP 174 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt-~~ 174 (607)
+++++.... ...+.++++ +++ ...+. ..
T Consensus 88 ~~~l~s~s~-------------------------------------------------D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSSW-------------------------------------------------DKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEET-------------------------------------------------TSEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEcC-------------------------------------------------CCcEEEEECCCCcEEEEEcCCC
Confidence 888776421 123334455 443 23332 23
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
..+..++|+|||++|+..+.+ ..|.+||+.+.....+.... .-...+..+.|+|+++
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECKFSSAEKE----------NHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEEEECCTTT----------SCSSCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCceeeeeccc----------CCCceeeeeeeccccc
Confidence 456789999999998876532 36889998865443332100 0011123478888874
Q ss_pred ce-------EEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 255 ST-------LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 255 ~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
.. -+++.. .....+.+++. .+.....+......+..++|+|||+.|+.... ++ .|.
T Consensus 176 ~~~~~~~~~~~l~s~----------~~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~--dg--~v~ 238 (343)
T 2xzm_R 176 SANKVQPFAPYFASV----------GWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGGK--DK--KLL 238 (343)
T ss_dssp SCSCCCSSCCEEEEE----------ETTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEET--TC--EEE
T ss_pred cccccCCCCCEEEEE----------cCCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEcC--CC--eEE
Confidence 20 011111 11123445542 11011223334456778999999998876542 22 566
Q ss_pred EEcCCCCCCCceEe-eeccccccccCCCCCCeeeCCCCCEEEE
Q 007338 328 LVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (607)
Q Consensus 328 ~~dl~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~~~~ 369 (607)
+.|+.........+ ....+.. +.|+|++..++.
T Consensus 239 iwd~~~~~~~~~~~~~~~~v~~---------v~~sp~~~~la~ 272 (343)
T 2xzm_R 239 IWDILNLTYPQREFDAGSTINQ---------IAFNPKLQWVAV 272 (343)
T ss_dssp EEESSCCSSCSEEEECSSCEEE---------EEECSSSCEEEE
T ss_pred EEECCCCcccceeecCCCcEEE---------EEECCCCCEEEE
Confidence 66774321112222 1122333 789999886653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-05 Score=76.68 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=107.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|||||+.||.... + ..|.++|+.+++......... .....+..+.|+|++++|+....+
T Consensus 18 ~v~~l~~sp~g~~las~~~--------D--~~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~s~D---- 82 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG--------D--RRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFD---- 82 (345)
T ss_dssp CEEEEEECTTSSCEEEEET--------T--SCEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEEETT----
T ss_pred cEEEEEECCCCCEEEEEcC--------C--CeEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEEECC----
Confidence 4678999999999887653 2 456677887775321110011 111236789999999887764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC---eeecCC-CCceeeeeeCCCCc
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT---AKDFGT-PAVYTAVEPSPDQK 187 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~lt~-~~~~~~~~~SpDg~ 187 (607)
+ ...||.++ .+. ...+.. ...+..++|+|||+
T Consensus 83 ------------------~-------------------------~v~iw~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~ 118 (345)
T 3fm0_A 83 ------------------A-------------------------TTCIWKKN-QDDFECVTTLEGHENEVKSVAWAPSGN 118 (345)
T ss_dssp ------------------S-------------------------CEEEEEEC-CC-EEEEEEECCCSSCEEEEEECTTSS
T ss_pred ------------------C-------------------------cEEEEEcc-CCCeEEEEEccCCCCCceEEEEeCCCC
Confidence 0 01222221 111 122322 23567899999999
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCee-EEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCC
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
+|+..+.+ ..|.+||+.++.. ..+..+. .-...+..+.|+|+++. |+- ....
T Consensus 119 ~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~-l~s--~s~d- 171 (345)
T 3fm0_A 119 LLATCSRD-------------KSVWVWEVDEEDEYECVSVLN----------SHTQDVKHVVWHPSQEL-LAS--ASYD- 171 (345)
T ss_dssp EEEEEETT-------------SCEEEEEECTTSCEEEEEEEC----------CCCSCEEEEEECSSSSC-EEE--EETT-
T ss_pred EEEEEECC-------------CeEEEEECCCCCCeEEEEEec----------CcCCCeEEEEECCCCCE-EEE--EeCC-
Confidence 98877642 3688898875532 2221100 00112345899999973 221 1111
Q ss_pred CCccccCCCceEEeccCCCCCCCCc---eeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcC
Q 007338 267 DANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~---~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl 331 (607)
..+.+++. ..+ +. ..+......+..++|+|||..|+.... ++.-+||....
T Consensus 172 ---------~~i~~w~~--~~~-~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~--D~~v~iW~~~~ 225 (345)
T 3fm0_A 172 ---------DTVKLYRE--EED-DWVCCATLEGHESTVWSLAFDPSGQRLASCSD--DRTVRIWRQYL 225 (345)
T ss_dssp ---------SCEEEEEE--ETT-EEEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEEEC
T ss_pred ---------CcEEEEEe--cCC-CEEEEEEecCCCCceEEEEECCCCCEEEEEeC--CCeEEEecccc
Confidence 12333332 111 11 123233456778999999998776542 34567776543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.6e-05 Score=89.37 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=82.2
Q ss_pred eEEEeccCCCCCCCe-eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
|.+.++. +++. ..+.. ....+....|||||++||.... ...|.++|+.+++..........
T Consensus 639 i~vw~~~----~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~-- 700 (1249)
T 3sfz_A 639 LQVFKAE----TGEKLLDIKA--HEDEVLCCAFSSDDSYIATCSA----------DKKVKIWDSATGKLVHTYDEHSE-- 700 (1249)
T ss_dssp EEEEETT----TCCEEEEECC--CSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTCCEEEEEECCSS--
T ss_pred EEEEECC----CCCEEEEecc--CCCCEEEEEEecCCCEEEEEeC----------CCeEEEEECCCCceEEEEcCCCC--
Confidence 5666765 4443 33332 2336889999999999887653 25799999999876543322222
Q ss_pred cccccceEEecCC-e-EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 86 NAVFGSFVWVNNS-T-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 86 ~~~~~~~~Wspd~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+.|+|++ . +++.... ...|.+++
T Consensus 701 --~v~~~~~~~~~~~~~l~sg~~-------------------------------------------------d~~v~vwd 729 (1249)
T 3sfz_A 701 --QVNCCHFTNKSNHLLLATGSN-------------------------------------------------DFFLKLWD 729 (1249)
T ss_dssp --CEEEEEECSSSSCCEEEEEET-------------------------------------------------TSCEEEEE
T ss_pred --cEEEEEEecCCCceEEEEEeC-------------------------------------------------CCeEEEEE
Confidence 26688999863 3 4443210 12344455
Q ss_pred C-CCC-eeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 164 L-DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 164 ~-~g~-~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
+ +++ ...+.. ...+..+.|+|||+.|+..+.+ ..|.+||+.+++..
T Consensus 730 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-------------g~v~vwd~~~~~~~ 778 (1249)
T 3sfz_A 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD-------------GTLRLWDVRSANER 778 (1249)
T ss_dssp TTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS-------------SEEEEEEGGGTEEE
T ss_pred CCCcchhheecCCCCCEEEEEEecCCCEEEEEECC-------------CeEEEEeCCCCccc
Confidence 5 443 223322 3356789999999988877542 36888998766543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-07 Score=92.30 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=116.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|||||++||.... ...|.++|+.+++.+.+..... ....+..+.|+|++++++....+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d---- 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA----------TNQVELYEQDGNGWKHARTFSD--HDKIVTCVDWAPKSNRIVTCSQD---- 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCS----------SSCBCEEEEETTEEEECCCBCC--CSSCEEEEEECTTTCCEEEEETT----
T ss_pred cEEEEEECCCCCEEEEecC----------CCEEEEEEccCCceEEEEEEec--CCceEEEEEEeCCCCEEEEEeCC----
Confidence 5889999999998876542 2466777887774222221111 11226688999998877764211
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC----eeecC-CCCceeeeeeCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT----AKDFG-TPAVYTAVEPSPD 185 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~~lt-~~~~~~~~~~SpD 185 (607)
..|.++++ +++ ...+. ....+..+.|+||
T Consensus 77 ---------------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (377)
T 3dwl_C 77 ---------------------------------------------RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN 111 (377)
T ss_dssp ---------------------------------------------SSEEEC------CCCCEEECCCCSSCEEEEECCTT
T ss_pred ---------------------------------------------CeEEEEEcCCCCceeeeeEecccCCceEEEEECCC
Confidence 11222222 222 12222 2235678999999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCCe----eEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
++.|+....+ ..|.+||+.+++ .+.+... -...+..+.|+||++. |+. .
T Consensus 112 ~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~-l~~-~ 164 (377)
T 3dwl_C 112 EDKFAVGSGA-------------RVISVCYFEQENDWWVSKHLKRP------------LRSTILSLDWHPNNVL-LAA-G 164 (377)
T ss_dssp SSCCEEEESS-------------SCEEECCC-----CCCCEEECSS------------CCSCEEEEEECTTSSE-EEE-E
T ss_pred CCEEEEEecC-------------CeEEEEEECCcccceeeeEeecc------------cCCCeEEEEEcCCCCE-EEE-E
Confidence 9998887642 368889988765 3333210 0122345899999873 221 1
Q ss_pred eecCCCCccccCCCceEEeccCC--CCC--------CCC---ceeee--ecCcccceeeEcCCCcEEEEEEeccccceEE
Q 007338 262 AQDRGDANVEVSPRDIIYTQPAE--PAE--------GEK---PEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (607)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~--~~~--------g~~---~~~l~--~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l 326 (607)
..+ ..+.+++.. ... +.. ...+. .....+..+.|+|||..|+.... ++ .|
T Consensus 165 ~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~--~i 229 (377)
T 3dwl_C 165 CAD-----------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH--DS--SV 229 (377)
T ss_dssp ESS-----------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET--TT--EE
T ss_pred eCC-----------CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC--CC--cE
Confidence 111 123333320 000 000 01111 23345678999999997776542 22 45
Q ss_pred EEEcCCCCCCC---ceEeee--ccccccccCCCCCCeeeCCCCCEEEEE
Q 007338 327 WLVCPGSKDVA---PRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAK 370 (607)
Q Consensus 327 ~~~dl~~~~~~---~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~ 370 (607)
.++|+.+++.. ...+.. ..+.. +.|+|+|+.|+..
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~---------~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRS---------LLWANESAIVAAG 269 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEE---------EEEEETTEEEEEE
T ss_pred EEEECCCCCCcceeeEeecCCCCceEE---------EEEcCCCCEEEEE
Confidence 55666663211 111211 11222 7899999876544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=79.48 Aligned_cols=231 Identities=10% Similarity=0.033 Sum_probs=124.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.-..|.|+|+++.|+|+-. ....|+++|+++++.+.+. ... .+..+.|++++++++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~---------~~~~i~~~d~~~~~~~~~~-~~~-----~~~~i~~~~dG~l~v~~------- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDI---------PAKKVCRWDSFTKQVQRVT-MDA-----PVSSVALRQSGGYVATI------- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEET---------TTTEEEEEETTTCCEEEEE-CSS-----CEEEEEEBTTSSEEEEE-------
T ss_pred cccCCeEECCCCEEEEEEC---------CCCEEEEEECCCCcEEEEe-CCC-----ceEEEEECCCCCEEEEE-------
Confidence 4568999999999888753 3468999999998775442 122 25678899998865542
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCC-----C-CceeeeeeCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-----P-AVYTAVEPSP 184 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~-----~-~~~~~~~~Sp 184 (607)
...|+++++ +++.+.+.. + .....+.++|
T Consensus 72 --------------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~ 107 (297)
T 3g4e_A 72 --------------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP 107 (297)
T ss_dssp --------------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT
T ss_pred --------------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC
Confidence 013444454 343333211 1 1245789999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
||+ |++..+......... ......||.++.++. ...+... ...+..+.|+|||+. ||+....
T Consensus 108 dG~-l~~~~~~~~~~~~~~-~~~~~~l~~~d~~g~-~~~~~~~-------------~~~pngi~~spdg~~-lyv~~~~- 169 (297)
T 3g4e_A 108 AGR-YFAGTMAEETAPAVL-ERHQGALYSLFPDHH-VKKYFDQ-------------VDISNGLDWSLDHKI-FYYIDSL- 169 (297)
T ss_dssp TSC-EEEEEEECCSBTTBC-CTTCEEEEEECTTSC-EEEEEEE-------------ESBEEEEEECTTSCE-EEEEEGG-
T ss_pred CCC-EEEecCCcccccccc-cCCCcEEEEEECCCC-EEEEeec-------------cccccceEEcCCCCE-EEEecCC-
Confidence 998 666654321100000 001236888887654 3333210 011235899999983 4443221
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCc---eeeee---cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCc
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKP---EILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~l~~---~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~ 338 (607)
...++.++.++.+| .. +.+.. .......+++.++|..++.... ..+|+++|++++ +.
T Consensus 170 ----------~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~~v~~~d~~tG--~~ 232 (297)
T 3g4e_A 170 ----------SYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GGRVIRLDPVTG--KR 232 (297)
T ss_dssp ----------GTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TTEEEEECTTTC--CE
T ss_pred ----------CCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CCEEEEEcCCCc--eE
Confidence 12344443212233 22 11211 1223456788889876555431 236999999863 32
Q ss_pred eEeee---ccccccccCCCCCCeeeC-CCCCEEEEEee
Q 007338 339 RVLFD---RVFENVYSDPGSPMMTRT-STGTNVIAKIK 372 (607)
Q Consensus 339 ~~l~~---~~~~~~~~~~~~~~~~~~-~dg~~~~~~~~ 372 (607)
...+. ..+.. +.+. ||++.||+.+.
T Consensus 233 ~~~i~~p~~~~t~---------~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 LQTVKLPVDKTTS---------CCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECSSSBEEE---------EEEESGGGCEEEEEEB
T ss_pred EEEEECCCCCceE---------EEEeCCCCCEEEEEcC
Confidence 22221 12222 5665 77777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-06 Score=93.63 Aligned_cols=215 Identities=11% Similarity=0.083 Sum_probs=124.1
Q ss_pred eeEEEeccCCCCCC-CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee-cccCCCc
Q 007338 6 GIGIHRLLPDDSLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~ 83 (607)
.|.|.++. ++ ..+.+.. ....+..+.|||||++|+.... ...|.++|+.+++... +..+..
T Consensus 36 ~v~iwd~~----~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~- 98 (814)
T 3mkq_A 36 RVEIWNYE----TQVEVRSIQV--TETPVRAGKFIARKNWIIVGSD----------DFRIRVFNYNTGEKVVDFEAHPD- 98 (814)
T ss_dssp EEEEEETT----TTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEET----------TSEEEEEETTTCCEEEEEECCSS-
T ss_pred EEEEEECC----CCceEEEEec--CCCcEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEecCCC-
Confidence 46667765 44 3344442 2336899999999999988753 3578999999887643 332222
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+.|+|++++++.... ...+.+++
T Consensus 99 ----~v~~~~~s~~~~~l~~~~~-------------------------------------------------dg~i~vw~ 125 (814)
T 3mkq_A 99 ----YIRSIAVHPTKPYVLSGSD-------------------------------------------------DLTVKLWN 125 (814)
T ss_dssp ----CEEEEEECSSSSEEEEEET-------------------------------------------------TSEEEEEE
T ss_pred ----CEEEEEEeCCCCEEEEEcC-------------------------------------------------CCEEEEEE
Confidence 2678999999887665421 01233334
Q ss_pred C-CC-Ce-eecC-CCCceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccc
Q 007338 164 L-DG-TA-KDFG-TPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (607)
Q Consensus 164 ~-~g-~~-~~lt-~~~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (607)
+ ++ .. ..+. ....+..+.|+| |++.|+....+ ..|.+||+.++........
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~----------- 181 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTT----------- 181 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-------------SEEEEEETTCSSCSEEEEC-----------
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCcceeEEec-----------
Confidence 3 22 21 2222 223567899999 77777776532 3688999876543222110
Q ss_pred cccCCCCcceeec--CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEE
Q 007338 239 SVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 239 ~~~~~~~~~~wsp--dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~ 316 (607)
........+.|+| +++. +.... ....+.+++. ..+.....+......+..+.|+|+|..++..
T Consensus 182 ~~~~~v~~~~~~~~~~~~~--l~~~~-----------~dg~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPY--MITAS-----------DDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp CCTTCCCEEEECCSTTCCE--EEEEC-----------TTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred CCCCCEEEEEEEECCCCCE--EEEEe-----------CCCEEEEEEC--CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 0012344588998 7762 22211 1124555553 2221222333344567789999999877665
Q ss_pred EeccccceEEEEEcCCC
Q 007338 317 TWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 317 ~~~~~~~~~l~~~dl~~ 333 (607)
.. ++ .|.++|+.+
T Consensus 247 ~~--dg--~v~vwd~~~ 259 (814)
T 3mkq_A 247 SE--DG--TLKIWNSST 259 (814)
T ss_dssp ET--TS--CEEEEETTT
T ss_pred eC--CC--eEEEEECCC
Confidence 42 22 466668776
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-05 Score=75.77 Aligned_cols=220 Identities=12% Similarity=0.126 Sum_probs=120.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-----eecccCCCccccccccceEEecCCeEEEEEec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~ 106 (607)
.+....|||||+.|+.... ...+.++++.+++. +.+..+. ..+..+.|+++++++....
T Consensus 99 ~v~~~~~s~~~~~l~s~~~----------d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~s~- 162 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGL----------DNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFLDDNQIVTSSG- 162 (340)
T ss_dssp CEEEEEECTTSSEEEEEET----------TCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEEETTEEEEEET-
T ss_pred cEEEEEECCCCCEEEEEeC----------CCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEECCCCcEEEEEC-
Confidence 5778899999998877653 25677888876532 1222111 1255778888877543320
Q ss_pred CCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeC
Q 007338 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPS 183 (607)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~S 183 (607)
...+.++|+ +++ ...+.. ...+..++|+
T Consensus 163 -------------------------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 163 -------------------------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp -------------------------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred -------------------------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 012333444 342 223332 2356789999
Q ss_pred CCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE-eccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEe
Q 007338 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 184 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (607)
||++.|+..+.+ ..+.+||+.++.... +.. -...+..+.|+|+++. + +..
T Consensus 194 ~~~~~l~sg~~d-------------~~v~~wd~~~~~~~~~~~~-------------h~~~v~~v~~~p~~~~-l--~s~ 244 (340)
T 1got_B 194 PDTRLFVSGACD-------------ASAKLWDVREGMCRQTFTG-------------HESDINAICFFPNGNA-F--ATG 244 (340)
T ss_dssp TTSSEEEEEETT-------------SCEEEEETTTCSEEEEECC-------------CSSCEEEEEECTTSSE-E--EEE
T ss_pred CCCCEEEEEeCC-------------CcEEEEECCCCeeEEEEcC-------------CcCCEEEEEEcCCCCE-E--EEE
Confidence 999987766532 368899998765433 221 0112345899999973 2 111
Q ss_pred ecCCCCccccCCCceEEeccCCCCCCCCceeeeec--CcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceE
Q 007338 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (607)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~--~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~ 340 (607)
... ..+.+++. ..+.....+... ...+..+.|+|+|..|+.... + ..+.+.|+...+ ....
T Consensus 245 s~d----------~~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--d--~~i~vwd~~~~~-~~~~ 307 (340)
T 1got_B 245 SDD----------ATCRLFDL--RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD--D--FNCNVWDALKAD-RAGV 307 (340)
T ss_dssp ETT----------SCEEEEET--TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET--T--SEEEEEETTTCC-EEEE
T ss_pred cCC----------CcEEEEEC--CCCcEEEEEccCCcccceEEEEECCCCCEEEEECC--C--CeEEEEEcccCc-EeeE
Confidence 111 23444443 111011111111 124667899999998776542 2 256667876631 1222
Q ss_pred eee--ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 341 LFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 341 l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+.. ..+.. +.|+|+|+.|+...
T Consensus 308 ~~~h~~~v~~---------~~~s~dg~~l~s~s 331 (340)
T 1got_B 308 LAGHDNRVSC---------LGVTDDGMAVATGS 331 (340)
T ss_dssp EECCSSCEEE---------EEECTTSSCEEEEE
T ss_pred eecCCCcEEE---------EEEcCCCCEEEEEc
Confidence 221 12222 78999998766544
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.58 E-value=0.0001 Score=75.31 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=42.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||||++|+-.+. ...|.++|+.+++.......... .+..+.|+|++++++..
T Consensus 68 ~V~~~~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~h~~----~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQ----------DGRLIVWNALTSQKTHAIKLHCP----WVMECAFAPNGQSVACG 126 (380)
T ss_dssp CEEEEEECTTSSCEEEEET----------TSEEEEEETTTTEEEEEEECCCT----TCCCCEECTTSSEEEEC
T ss_pred EEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCccceEEecCCC----CEEEEEECCCCCEEEEe
Confidence 5899999999999876553 25788889998875433222221 25688999999887763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.9e-05 Score=84.46 Aligned_cols=197 Identities=10% Similarity=0.070 Sum_probs=112.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC----ce-eecccCCCcccccc-ccceEEec--CCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EA-KPLFESPDICLNAV-FGSFVWVN--NSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----~~-~~lt~~~~~~~~~~-~~~~~Wsp--d~~~l~~ 103 (607)
.+....|||||+.||+... ..|.++|++++ +. ..+..+. .. +..+.|+| |+++++.
T Consensus 20 ~v~~~~~spdg~~l~~~~~-----------~~v~v~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCG-----------KSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCCEEETTTTEEEEEET-----------TEEEEEECCSSCCSSCSEEEECTTT-----TSCEEEEEECSSTTCCEEEE
T ss_pred ceeEEEECCCCCEEEEecC-----------CeEEEEECCCCCCccccceEEecCC-----CceEEEEEECcCCCCCEEEE
Confidence 5889999999999999762 37889999987 44 3443222 23 56889999 9988776
Q ss_pred EecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC--------C-eeecC-
Q 007338 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--------T-AKDFG- 172 (607)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g--------~-~~~lt- 172 (607)
...+ | .|.++++ ++ + ...+.
T Consensus 84 ~~~d----------------------g---------------------------~v~vw~~~~~~~~~~~~~~~~~~~~~ 114 (615)
T 1pgu_A 84 GDES----------------------G---------------------------KVIVWGWTFDKESNSVEVNVKSEFQV 114 (615)
T ss_dssp EETT----------------------S---------------------------EEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred ecCC----------------------C---------------------------EEEEEeCCCCcccccccccccchhhc
Confidence 4211 1 1111111 11 0 11121
Q ss_pred CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecC
Q 007338 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (607)
Q Consensus 173 ~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (607)
....+..++|+|||++|+........ ...|++|+ .+.....+.. -...+..+.|+|+
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~---------~~~v~~~d-~~~~~~~~~~-------------~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDN---------FGVFISWD-SGNSLGEVSG-------------HSQRINACHLKQS 171 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSC---------SEEEEETT-TCCEEEECCS-------------CSSCEEEEEECSS
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCC---------ccEEEEEE-CCCcceeeec-------------CCccEEEEEECCC
Confidence 22356789999999999988643211 13677787 3333333321 0112345899999
Q ss_pred CCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc---ccceeeEcCC-CcEEEEEEeccccceEEEE
Q 007338 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCDD-SLALVNETWYKTSQTRTWL 328 (607)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~---~~~~~~ws~D-g~~l~~~~~~~~~~~~l~~ 328 (607)
++..++-.. ....+.+++. ..+.....+..... .+..+.|+|+ +..++.... + ..|.+
T Consensus 172 ~~~~l~~~~------------~d~~v~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d--g~i~v 233 (615)
T 1pgu_A 172 RPMRSMTVG------------DDGSVVFYQG--PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--D--RKISC 233 (615)
T ss_dssp SSCEEEEEE------------TTTEEEEEET--TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--T--CCEEE
T ss_pred CCcEEEEEe------------CCCcEEEEeC--CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--C--CeEEE
Confidence 974333221 1134555553 22211122333334 5778999999 887766542 1 35777
Q ss_pred EcCCCC
Q 007338 329 VCPGSK 334 (607)
Q Consensus 329 ~dl~~~ 334 (607)
+|+.++
T Consensus 234 wd~~~~ 239 (615)
T 1pgu_A 234 FDGKSG 239 (615)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 788763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.8e-05 Score=73.79 Aligned_cols=225 Identities=9% Similarity=0.061 Sum_probs=119.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc------eeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~------~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+....|+|++..++++... + ..|.++++.+.+ .+.+..+.. .+..+.|+||+++++...
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~-------D--~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASR-------D--KTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSAS 84 (319)
T ss_dssp CEEEEEECSSCTTEEEEEET-------T--SEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred eEEEEEccCCCccEEEEecC-------C--ccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEEe
Confidence 57889999987554555443 3 355555654321 122322222 256789999998877642
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecC-CCCceeeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEP 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt-~~~~~~~~~~ 182 (607)
. ...|.++|+ +++ ...+. ....+..++|
T Consensus 85 ~-------------------------------------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~ 115 (319)
T 3frx_A 85 W-------------------------------------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDI 115 (319)
T ss_dssp T-------------------------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred C-------------------------------------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEE
Confidence 1 123344455 443 23332 2335678999
Q ss_pred CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc---eEEE
Q 007338 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS---TLYW 259 (607)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~---~l~~ 259 (607)
+|+++.|+..+.+ ..+.+||+++.....+..- ...+..+.|+|.++. ...+
T Consensus 116 ~~~~~~l~s~s~D-------------~~i~vwd~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 116 DKKASMIISGSRD-------------KTIKVWTIKGQCLATLLGH-------------NDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp CTTSCEEEEEETT-------------SCEEEEETTSCEEEEECCC-------------SSCEEEEEECCC------CCEE
T ss_pred cCCCCEEEEEeCC-------------CeEEEEECCCCeEEEEecc-------------CCcEEEEEEccCCCCCCCccEE
Confidence 9999988876542 3688899987766555320 111224667765431 0111
Q ss_pred EEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCce
Q 007338 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (607)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~ 339 (607)
+... ....+.+++. ..+.....+......+..+.|+|||..|+.... ++ .|.+.|+.+++ ...
T Consensus 170 ~s~~----------~d~~i~~wd~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~--dg--~i~iwd~~~~~-~~~ 232 (319)
T 3frx_A 170 ISAG----------NDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGK--DG--EIMLWNLAAKK-AMY 232 (319)
T ss_dssp EEEE----------TTSCEEEEET--TTTEEEEEECCCCSCEEEEEECTTSSEEEEEET--TC--EEEEEETTTTE-EEE
T ss_pred EEEe----------CCCEEEEEEC--CcchhheeecCCCCcEEEEEEcCCCCEEEEEeC--CC--eEEEEECCCCc-EEE
Confidence 1111 1123444443 111011223334456778999999998776542 22 56666887631 111
Q ss_pred Eee-eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 340 VLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 340 ~l~-~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.+. ...+.. +.|+|++..++...
T Consensus 233 ~~~~~~~v~~---------~~~sp~~~~la~~~ 256 (319)
T 3frx_A 233 TLSAQDEVFS---------LAFSPNRYWLAAAT 256 (319)
T ss_dssp EEECCSCEEE---------EEECSSSSEEEEEE
T ss_pred EecCCCcEEE---------EEEcCCCCEEEEEc
Confidence 111 111222 78999998776544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-05 Score=78.57 Aligned_cols=225 Identities=11% Similarity=0.009 Sum_probs=123.6
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
...|.|+||++.++|+.. ....|+++|+++++.+.+.. .. .+..+.|++++++++...
T Consensus 51 ~egp~~~~~~~~l~~~d~---------~~~~i~~~d~~~~~~~~~~~-~~-----~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNI---------LERELHELHLASGRKTVHAL-PF-----MGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEEEEEC-SS-----CEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCCCCEEEEEEC---------CCCEEEEEECCCCcEEEEEC-CC-----cceEEEEeCCCeEEEEEC-------
Confidence 468999999999888753 24689999999988765532 22 256788999998877530
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC------CceeeeeeCCC
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP------AVYTAVEPSPD 185 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~------~~~~~~~~SpD 185 (607)
..|+++++ +|+.+.+... .....+.++||
T Consensus 109 --------------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 144 (326)
T 2ghs_A 109 --------------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS 144 (326)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred --------------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC
Confidence 12555555 4444443211 13457899999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecC
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~ 265 (607)
|+ +++........ .....||.++ +++.+.+... ......+.|+|||+. +++...
T Consensus 145 G~-l~v~~~~~~~~------~~~~~l~~~~--~g~~~~~~~~-------------~~~~~~i~~s~dg~~-lyv~~~--- 198 (326)
T 2ghs_A 145 GA-LWIGTMGRKAE------TGAGSIYHVA--KGKVTKLFAD-------------ISIPNSICFSPDGTT-GYFVDT--- 198 (326)
T ss_dssp SC-EEEEEEETTCC------TTCEEEEEEE--TTEEEEEEEE-------------ESSEEEEEECTTSCE-EEEEET---
T ss_pred CC-EEEEeCCCcCC------CCceEEEEEe--CCcEEEeeCC-------------CcccCCeEEcCCCCE-EEEEEC---
Confidence 97 55554321100 0124788998 4666554320 011235899999983 433321
Q ss_pred CCCccccCCCceEEeccCCCCCC-C--Cceeeee---cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCce
Q 007338 266 GDANVEVSPRDIIYTQPAEPAEG-E--KPEILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (607)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g-~--~~~~l~~---~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~ 339 (607)
....+++++.++.+| . ..+.+.. .......+.+.++|..++... ....|+++|+++ ...+
T Consensus 199 --------~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~~d~~g--~~~~ 264 (326)
T 2ghs_A 199 --------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDRYDTDG--NHIA 264 (326)
T ss_dssp --------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEEECTTC--CEEE
T ss_pred --------CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEEECCCC--CEEE
Confidence 112444444311122 1 1111211 122345677888887655442 123799999854 2222
Q ss_pred Eee-e-ccccccccCCCCCCeeeC-CCCCEEEEEee
Q 007338 340 VLF-D-RVFENVYSDPGSPMMTRT-STGTNVIAKIK 372 (607)
Q Consensus 340 ~l~-~-~~~~~~~~~~~~~~~~~~-~dg~~~~~~~~ 372 (607)
.+. . ..+.. +.++ ++++.|++...
T Consensus 265 ~i~~~~~~~~~---------~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 265 RYEVPGKQTTC---------PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECSCSBEEE---------EEEESTTSCEEEEEEB
T ss_pred EEECCCCCcEE---------EEEecCCCCEEEEEec
Confidence 221 1 11222 6666 77777776654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.6e-05 Score=79.13 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=111.9
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
+....|||||++||.... ...|.++|+++++.......... .+..+.|+|+++.++....
T Consensus 126 v~~v~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~------ 185 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE----------DRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGDKLVSGSG------ 185 (393)
T ss_dssp EEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEET------
T ss_pred EEEEEECCCCCEEEEEcC----------CCeEEEEECCCCcEEEEEccCCC----CEEEEEEcCCCCEEEEecC------
Confidence 678999999999877653 25788889998876544322222 2668999999887776421
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCC-CCceE
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSP-DQKYV 189 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~Sp-Dg~~i 189 (607)
...+.++|+ +++ ...+.....+..+.|+| ||++|
T Consensus 186 -------------------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 186 -------------------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp -------------------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred -------------------------------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 123334455 342 22232333456789999 88888
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeE-EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
+..+.+ ..|.+||+.++... .+.... .. .. +-...+..+.|+|||+. |+ . .. .+
T Consensus 223 ~~~s~d-------------~~v~iwd~~~~~~~~~~~~~~-~~--~~---~h~~~v~~v~~~~~g~~-l~-s-~s--~d- 277 (393)
T 1erj_A 223 AAGSLD-------------RAVRVWDSETGFLVERLDSEN-ES--GT---GHKDSVYSVVFTRDGQS-VV-S-GS--LD- 277 (393)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEEC---------C---CCSSCEEEEEECTTSSE-EE-E-EE--TT-
T ss_pred EEEcCC-------------CcEEEEECCCCcEEEeecccc-cC--CC---CCCCCEEEEEECCCCCE-EE-E-Ee--CC-
Confidence 776532 36889999876543 231100 00 00 00112335899999973 21 1 11 11
Q ss_pred ccccCCCceEEeccCCC----------CCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCC
Q 007338 269 NVEVSPRDIIYTQPAEP----------AEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~----------~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
..+.+++... ..+.....+......+..++|+|++..|+.... + ..+.+.|+.++
T Consensus 278 -------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~--D--~~v~iwd~~~~ 342 (393)
T 1erj_A 278 -------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK--D--RGVLFWDKKSG 342 (393)
T ss_dssp -------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET--T--SEEEEEETTTC
T ss_pred -------CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC--C--CeEEEEECCCC
Confidence 2334443200 000001112223334667899999988776542 2 25666788773
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-05 Score=74.69 Aligned_cols=241 Identities=10% Similarity=0.060 Sum_probs=129.7
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
+.+.+.+.. .......|.|+|||+.|+++... ...|++++++++ .+.+..... ....+.++++
T Consensus 17 ~~~~~~l~~--~~~~~eg~~~d~~g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~~~-----~~~~l~~~~d 79 (296)
T 3e5z_A 17 GAEARRLAD--GFTWTEGPVYVPARSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHPSH-----HQNGHCLNKQ 79 (296)
T ss_dssp TCCCEEEEC--CCSSEEEEEEEGGGTEEEEEEGG---------GTEEEEEETTSC-EEEEESSCS-----SEEEEEECTT
T ss_pred CCcEEEEec--CCccccCCeEeCCCCEEEEEeCC---------CCEEEEEECCCC-eEEEECCCC-----CcceeeECCC
Confidence 445566652 23357789999999988887642 458999999988 655543222 1457888999
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC--
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-- 174 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-- 174 (607)
+++++... ....|++++. +|+.+.+...
T Consensus 80 g~l~v~~~-------------------------------------------------~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 80 GHLIACSH-------------------------------------------------GLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp CCEEEEET-------------------------------------------------TTTEEEEECSTTCCEEEEECEET
T ss_pred CcEEEEec-------------------------------------------------CCCeEEEEcCCCCcEEEEeeccC
Confidence 88766531 0124555666 5554443211
Q ss_pred ----CceeeeeeCCCCceEEEEEcc----CCCc-cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCC
Q 007338 175 ----AVYTAVEPSPDQKYVLITSMH----RPYS-YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (607)
Q Consensus 175 ----~~~~~~~~SpDg~~i~~~~~~----~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (607)
.....+.++|||+ |+++... .... ...........|+.++.+ ++.+.+... ...+.
T Consensus 111 ~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-------------~~~~~ 175 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-------------RVKPN 175 (296)
T ss_dssp TEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC-------------CSSEE
T ss_pred CCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC-------------CCCCc
Confidence 1234688999996 5554210 0000 000000002368899887 555554320 01123
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCc---eeeee-cCcccceeeEcCCCcEEEEEEeccc
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHK-LDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~l~~-~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.+.|+|||+. + +.. .. ...+++++. ..+| +. ..+.. .......+++++||..++.. .
T Consensus 176 gi~~s~dg~~-l-v~~---~~--------~~~i~~~~~-~~~g-~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~--- 236 (296)
T 3e5z_A 176 GLAFLPSGNL-L-VSD---TG--------DNATHRYCL-NARG-ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-G--- 236 (296)
T ss_dssp EEEECTTSCE-E-EEE---TT--------TTEEEEEEE-CSSS-CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-T---
T ss_pred cEEECCCCCE-E-EEe---CC--------CCeEEEEEE-CCCC-cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-C---
Confidence 5899999983 2 221 11 124444443 0122 22 11111 12234568899999866554 1
Q ss_pred cceEEEEEcCCCCCCCceEee-eccccccccCCCCCCeee-CCCCCEEEEEe
Q 007338 322 SQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTR-TSTGTNVIAKI 371 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~-~~dg~~~~~~~ 371 (607)
..|++++.++ .....+. ...+.. +.+ +++++.|++..
T Consensus 237 --~~v~~~~~~g--~~~~~~~~~~~~~~---------~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 237 --DGVHVLTPDG--DELGRVLTPQTTSN---------LCFGGPEGRTLYMTV 275 (296)
T ss_dssp --TEEEEECTTS--CEEEEEECSSCCCE---------EEEESTTSCEEEEEE
T ss_pred --CeEEEECCCC--CEEEEEECCCCcee---------EEEECCCCCEEEEEc
Confidence 3789999875 2222221 111222 556 57888777765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-05 Score=84.75 Aligned_cols=228 Identities=11% Similarity=0.069 Sum_probs=127.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc------eeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~------~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+....|+|++..++++... + ..|.++++..+. .+.++.+.. .+..+.|+|++++++...
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~-------D--~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASR-------D--KSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CEEEEECCTTCCSEEEEEET-------T--SEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred eeEEEEecCCCCCEEEEEeC-------C--CcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEe
Confidence 58899999998666666543 2 466777776532 133433332 266889999998877642
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecC-CCCceeeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEP 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt-~~~~~~~~~~ 182 (607)
. ...|.++|+ +++ .+.+. ....+..++|
T Consensus 450 ~-------------------------------------------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 450 W-------------------------------------------------DGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp T-------------------------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred C-------------------------------------------------CCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 1 123444555 442 33332 2345678999
Q ss_pred CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEe
Q 007338 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (607)
|||+++|+..+.+ ..|.+||+.+.....+..... +-...+..+.|+|++...++....
T Consensus 481 s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 481 SLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGGE---------GHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp CTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSTT---------SCSSCEEEEEECSCSSSCEEEEEE
T ss_pred eCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCCC---------CCCCcEEEEEEeCCCCcceEEEEe
Confidence 9999998877542 368899987765554432100 001112358899987532222211
Q ss_pred ecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee
Q 007338 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~ 342 (607)
. ...+.+++. ..+.....+..+...+..++|+|||..|+.... ++ .|.+.|+.++ +.+.
T Consensus 539 ~-----------d~~v~vwd~--~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~--Dg--~i~iwd~~~~----~~~~ 597 (694)
T 3dm0_A 539 W-----------DKTVKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK--DG--VVLLWDLAEG----KKLY 597 (694)
T ss_dssp T-----------TSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TS--BCEEEETTTT----EEEE
T ss_pred C-----------CCeEEEEEC--CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC--CC--eEEEEECCCC----ceEE
Confidence 1 123555553 222112233344556788999999998776542 23 3555577663 2232
Q ss_pred eccccccccCCCCCCeeeCCCCCEEEEE
Q 007338 343 DRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (607)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~ 370 (607)
........ ..+.|+|++..++..
T Consensus 598 ~~~~~~~v-----~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 598 SLEANSVI-----HALCFSPNRYWLCAA 620 (694)
T ss_dssp CCBCSSCE-----EEEEECSSSSEEEEE
T ss_pred EecCCCcE-----EEEEEcCCCcEEEEE
Confidence 11111111 127899998866554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-05 Score=77.21 Aligned_cols=58 Identities=5% Similarity=0.003 Sum_probs=41.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc----eeecccCCCccccccccceEEecCCe-EEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESPDICLNAVFGSFVWVNNST-LLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~----~~~lt~~~~~~~~~~~~~~~Wspd~~-~l~~~ 104 (607)
.+....|||||+.|+.... ...|.++++.+++ .+.+..... .+..+.|+|+++ +++..
T Consensus 13 ~v~~~~~s~~~~~l~~~~~----------d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSW----------DGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET----------TSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC----------CCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEE
Confidence 5889999999999877653 2567888887776 444433222 267899999988 76664
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-05 Score=82.17 Aligned_cols=83 Identities=10% Similarity=-0.068 Sum_probs=49.1
Q ss_pred eeEEEeccCCCCCCC-------eeeeecCCCCCcccceEEccC----C---CEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 6 GIGIHRLLPDDSLGP-------EKEVHGYPDGAKINFVSWSPD----G---KRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~-------~~~lt~~~~~~~~~~~~~SPD----G---~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
.|.|.++. +++ ...+.. ....+....|+|+ | +.|+.... ...|.++++.+
T Consensus 37 ~i~iw~~~----~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~g~~~~~l~s~~~----------dg~i~iw~~~~ 100 (397)
T 1sq9_A 37 YLKVWDNK----LLDNENPKDKSYSHFV--HKSGLHHVDVLQAIERDAFELCLVATTSF----------SGDLLFYRITR 100 (397)
T ss_dssp EEEEEESB----CCTTCCGGGGEEEEEC--CTTCEEEEEEEEEEETTTEEEEEEEEEET----------TSCEEEEEEEE
T ss_pred EEEEEECC----CcccccCCCcceEEec--CCCcEEEEEEecccccCCccccEEEEEcC----------CCCEEEEEccC
Confidence 46677776 444 445543 2335899999999 9 88776543 25678888887
Q ss_pred Cc------eeecccCCCccccccccceEEe----cCCeE-EEEE
Q 007338 72 GE------AKPLFESPDICLNAVFGSFVWV----NNSTL-LIFT 104 (607)
Q Consensus 72 g~------~~~lt~~~~~~~~~~~~~~~Ws----pd~~~-l~~~ 104 (607)
++ ...+...........+..+.|+ |++++ ++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 76 4555433100001226789999 99887 6664
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.9e-05 Score=76.25 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=43.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC---CeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN---STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd---~~~l~~~ 104 (607)
.+....|||||+.++.....+ .+...|.++|+.+++...+..... ...+..+.|+|+ +++++..
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~------~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFA------RGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEE
T ss_pred ceEEEEEcCCCceEEEecCcc------CCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEe
Confidence 588999999999887765321 125789999999888654432111 112668899988 5766654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-05 Score=75.47 Aligned_cols=242 Identities=10% Similarity=0.013 Sum_probs=128.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
....+.|+|||+ |+++.. ....|+++|+++++.+.++..... .+..+.|++++++++.....
T Consensus 46 ~~~~~~~~~~g~-l~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~----~~~~i~~~~dg~l~v~~~~~---- 107 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDV---------FEGNIFKINPETKEIKRPFVSHKA----NPAAIKIHKDGRLFVCYLGD---- 107 (333)
T ss_dssp CEEEEEECTTSC-EEEEET---------TTCEEEEECTTTCCEEEEEECSSS----SEEEEEECTTSCEEEEECTT----
T ss_pred cccCcEECCCCC-EEEEEC---------CCCEEEEEeCCCCcEEEEeeCCCC----CcceEEECCCCcEEEEeCCC----
Confidence 467899999998 555442 236899999999988776422111 25678999999877764110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC-CCeee-cCC---CCceeeeeeCCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKD-FGT---PAVYTAVEPSPDQ 186 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-lt~---~~~~~~~~~SpDg 186 (607)
+. ....|++++.. +..+. +.. ......+.++|||
T Consensus 108 ------------------~~-----------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 108 ------------------FK-----------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp ------------------SS-----------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred ------------------CC-----------------------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence 00 02356777773 34442 221 1245678999998
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
+ +++........ .....|+.++.++++...+... ...+..+.|+|||+. +++. ...
T Consensus 147 ~-l~v~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~dg~~-l~v~-~~~-- 202 (333)
T 2dg1_A 147 G-FYFTDFRGYST------NPLGGVYYVSPDFRTVTPIIQN-------------ISVANGIALSTDEKV-LWVT-ETT-- 202 (333)
T ss_dssp C-EEEEECCCBTT------BCCEEEEEECTTSCCEEEEEEE-------------ESSEEEEEECTTSSE-EEEE-EGG--
T ss_pred C-EEEEecccccc------CCCceEEEEeCCCCEEEEeecC-------------CCcccceEECCCCCE-EEEE-eCC--
Confidence 5 55554321000 0023689999888776665320 011235889999973 3322 111
Q ss_pred CCccccCCCceEEeccCCCCCCCCceee-----eecC--cccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCce
Q 007338 267 DANVEVSPRDIIYTQPAEPAEGEKPEIL-----HKLD--LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l-----~~~~--~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~ 339 (607)
...+++++. ...|.....+ .... .....+.++++|..++.... ...|+++|+++ ...+
T Consensus 203 --------~~~i~~~d~-~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~----~~~v~~~d~~g--~~~~ 267 (333)
T 2dg1_A 203 --------ANRLHRIAL-EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGRVLVFNKRG--YPIG 267 (333)
T ss_dssp --------GTEEEEEEE-CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTEEEEECTTS--CEEE
T ss_pred --------CCeEEEEEe-cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----CCEEEEECCCC--CEEE
Confidence 123444442 0112111111 0111 23456788899886655421 23788899865 2222
Q ss_pred Eeeeccc-cccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 340 VLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 340 ~l~~~~~-~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.+..... ......+. .+.|++||+.|++....
T Consensus 268 ~~~~~~~~~g~~~~~~--~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 268 QILIPGRDEGHMLRST--HPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTGGGTCSCBCC--EEEECTTSCEEEEEEEC
T ss_pred EEEcCCCccccccCcc--eEEECCCCCEEEEEeCc
Confidence 2211100 00000011 17788998888776653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00019 Score=73.35 Aligned_cols=56 Identities=13% Similarity=-0.067 Sum_probs=38.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-------eeecccCCCccccccccceEEecC----C--
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------AKPLFESPDICLNAVFGSFVWVNN----S-- 98 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~~~lt~~~~~~~~~~~~~~~Wspd----~-- 98 (607)
.+....|+| +.|+.... ...|.++++.+++ ...+..+.. .+..+.|+|+ +
T Consensus 18 ~i~~~~~~~--~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSG----------DGYLKVWDNKLLDNENPKDKSYSHFVHKS-----GLHHVDVLQAIERDAFE 80 (397)
T ss_dssp CEEEEEECS--SEEEEEET----------TSEEEEEESBCCTTCCGGGGEEEEECCTT-----CEEEEEEEEEEETTTEE
T ss_pred CeEEEEecC--CeEEEEcC----------CCEEEEEECCCcccccCCCcceEEecCCC-----cEEEEEEecccccCCcc
Confidence 588999999 56555432 3578889999887 444432222 2668899998 8
Q ss_pred -eEEEEE
Q 007338 99 -TLLIFT 104 (607)
Q Consensus 99 -~~l~~~ 104 (607)
++++..
T Consensus 81 ~~~l~s~ 87 (397)
T 1sq9_A 81 LCLVATT 87 (397)
T ss_dssp EEEEEEE
T ss_pred ccEEEEE
Confidence 777764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00021 Score=73.40 Aligned_cols=220 Identities=13% Similarity=0.194 Sum_probs=119.6
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
.....||+ +.++.... ...|+++|+.+++...+..... ...+..+.|+|++++++....
T Consensus 96 ~~~~~~s~--~~l~~~~~----------d~~v~lw~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~~------ 154 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVAL----------ERNVYVWNADSGSVSALAETDE---STYVASVKWSHDGSFLSVGLG------ 154 (401)
T ss_dssp CBCEEECT--TSEEEEEE----------TTEEEEEETTTCCEEEEEECCT---TCCEEEEEECTTSSEEEEEET------
T ss_pred EEEEeecC--CCEEEEEC----------CCeEEEeeCCCCcEeEeeecCC---CCCEEEEEECCCCCEEEEECC------
Confidence 34466665 44544432 2579999999998766654321 112678999999887776421
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCceE
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKYV 189 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~~i 189 (607)
...|.++++ +++ ...+.. ...+..++| +++.|
T Consensus 155 -------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 189 (401)
T 4aez_A 155 -------------------------------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL 189 (401)
T ss_dssp -------------------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred -------------------------------------------CCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence 123334454 332 333332 234556777 55666
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCC-Ce-eEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDG-KL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
+.... ...|.+||+.. +. ...+.. -...+..+.|+|+++. ++ ....
T Consensus 190 ~~~~~-------------dg~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~-l~-s~~~---- 237 (401)
T 4aez_A 190 SSGSR-------------SGAIHHHDVRIANHQIGTLQG-------------HSSEVCGLAWRSDGLQ-LA-SGGN---- 237 (401)
T ss_dssp EEEET-------------TSEEEEEETTSSSCEEEEEEC-------------CSSCEEEEEECTTSSE-EE-EEET----
T ss_pred EEEcC-------------CCCEEEEecccCcceeeEEcC-------------CCCCeeEEEEcCCCCE-EE-EEeC----
Confidence 65543 23788999873 32 223321 0122345899999873 21 1111
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--cc
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RV 345 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~ 345 (607)
...+.+++. ..+.....+......+..+.|+|++..++..... .....|.++|+.++ +....+. ..
T Consensus 238 -------d~~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~--~~~~~~~~~~~ 305 (401)
T 4aez_A 238 -------DNVVQIWDA--RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-TMDKQIHFWNAATG--ARVNTVDAGSQ 305 (401)
T ss_dssp -------TSCEEEEET--TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC-TTTCEEEEEETTTC--CEEEEEECSSC
T ss_pred -------CCeEEEccC--CCCCccEEecCCcceEEEEEECCCCCCEEEEecC-CCCCEEEEEECCCC--CEEEEEeCCCc
Confidence 124555553 2221122333345567889999988654443211 01236777888773 3222222 22
Q ss_pred ccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+.. +.|+|+|+.++...
T Consensus 306 v~~---------~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 306 VTS---------LIWSPHSKEIMSTH 322 (401)
T ss_dssp EEE---------EEECSSSSEEEEEE
T ss_pred EEE---------EEECCCCCeEEEEe
Confidence 333 88999999877654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00011 Score=72.44 Aligned_cols=218 Identities=13% Similarity=0.130 Sum_probs=119.5
Q ss_pred eeEEEeccCCCCCCCe-eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.|.+.++. .++. ..+.. ....+....|+|+|+.|+.... ...|.++|+.+++..........
T Consensus 88 ~i~vwd~~----~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~- 150 (312)
T 4ery_A 88 TLKIWDVS----SGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSF----------DESVRIWDVKTGKCLKTLPAHSD- 150 (312)
T ss_dssp EEEEEETT----TCCEEEEEEC--CSSCEEEEEECSSSSEEEEEET----------TSCEEEEETTTCCEEEEECCCSS-
T ss_pred EEEEEECC----CCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCEEEEEecCCCC-
Confidence 35666765 4443 33332 2225788999999998876543 25788899998875433222221
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
.+..+.|+|++++++.... ...|.++++
T Consensus 151 ---~v~~~~~~~~~~~l~~~~~-------------------------------------------------d~~i~~wd~ 178 (312)
T 4ery_A 151 ---PVSAVHFNRDGSLIVSSSY-------------------------------------------------DGLCRIWDT 178 (312)
T ss_dssp ---CEEEEEECTTSSEEEEEET-------------------------------------------------TSCEEEEET
T ss_pred ---cEEEEEEcCCCCEEEEEeC-------------------------------------------------CCcEEEEEC
Confidence 2668899999887776421 123334444
Q ss_pred -CCC-eeecCC--CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 165 -DGT-AKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 165 -~g~-~~~lt~--~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
+++ ...+.. ...+..+.|+||+++|+....+ ..|.+||+.+++...........
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~--------- 236 (312)
T 4ery_A 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-------------NTLKLWDYSKGKCLKTYTGHKNE--------- 236 (312)
T ss_dssp TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT-------------TEEEEEETTTTEEEEEECSSCCS---------
T ss_pred CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCcEEEEEEecCCc---------
Confidence 332 222221 2245678999999999877542 36889999877544322100000
Q ss_pred cCCCCcceeec-CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEec
Q 007338 241 REGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (607)
Q Consensus 241 ~~~~~~~~wsp-dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~ 319 (607)
.......+++ +++ .++ . . .....+.+++. ..+.....+......+..++|+|++..++.....
T Consensus 237 -~~~~~~~~~~~~~~-~l~--s--g--------~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 237 -KYCIFANFSVTGGK-WIV--S--G--------SEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300 (312)
T ss_dssp -SSCCCEEEECSSSC-EEE--E--C--------CTTSCEEEEET--TTCCEEEEECCCSSCEEEEEECSSSSEEEEEECT
T ss_pred -eEEEEEEEEeCCCc-EEE--E--E--------CCCCEEEEEEC--CCchhhhhhhccCCcEEEEeecCcCCceEEEEcc
Confidence 0011234443 343 111 1 1 11234556664 2221222333344456788999999887765433
Q ss_pred cccceEEEEEc
Q 007338 320 KTSQTRTWLVC 330 (607)
Q Consensus 320 ~~~~~~l~~~d 330 (607)
.++.-++|..|
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 34455677544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00013 Score=73.44 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=41.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|+|||+.|+-.+. ...|.++|+.+++.. .+..+.. .+..+.|+|++++++..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~----------D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSW----------DKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSA 136 (343)
T ss_dssp CEEEEEECSSTTEEEEEET----------TSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEE
T ss_pred ceEEEEECCCCCEEEEEcC----------CCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEE
Confidence 5888999999998765442 357888899988764 3332222 26789999998877764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-05 Score=78.32 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=124.5
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCc-------e-eecccCCCccccccccceEEecCC-eEE
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------A-KPLFESPDICLNAVFGSFVWVNNS-TLL 101 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~-~~lt~~~~~~~~~~~~~~~Wspd~-~~l 101 (607)
.+....|+| |++.||.... ...|.++|+.+++ . ..+..+.. .+..+.|+|++ .++
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l 147 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSE----------DCTVMVWEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVL 147 (402)
T ss_dssp CEEEEEECTTCTTEEEEEET----------TSEEEEEECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEE
T ss_pred CEEEEEeCCCCCCEEEEEeC----------CCeEEEEEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEE
Confidence 588999999 8887766542 2568888988763 2 23322222 26688999996 566
Q ss_pred EEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeec--C-CCCc
Q 007338 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDF--G-TPAV 176 (607)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l--t-~~~~ 176 (607)
+.... ...|.++|+ +++ ...+ . ....
T Consensus 148 ~s~~~-------------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 148 LSAGC-------------------------------------------------DNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EEEET-------------------------------------------------TSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EEEcC-------------------------------------------------CCEEEEEECCCCCccEEEecCCCCCc
Confidence 65321 123444555 443 3334 2 2345
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec-cCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
+..++|+|||+.|+....+ ..|.+||+.+++..... ... .......+.|+||++
T Consensus 179 v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~- 233 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKDRPH-----------EGTRPVHAVFVSEGK- 233 (402)
T ss_dssp EEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEECSS-----------CSSSCCEEEECSTTE-
T ss_pred eEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeeccCC-----------CCCcceEEEEcCCCc-
Confidence 6789999999999887632 37899999877544322 100 001134589999986
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee--ecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~--~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
++....... ....+.+++. ..+..+..+. .....+..+.|+||+..++.... .++ .|.++|+.+
T Consensus 234 -~l~~g~~~~--------~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~-~dg--~i~i~d~~~ 299 (402)
T 2aq5_A 234 -ILTTGFSRM--------SERQVALWDT--KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK-GDS--SIRYFEITS 299 (402)
T ss_dssp -EEEEEECTT--------CCEEEEEEET--TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET-TCS--CEEEEEECS
T ss_pred -EEEEeccCC--------CCceEEEEcC--ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc-CCC--eEEEEEecC
Confidence 222211101 1234566664 2221211121 22345678899999987654321 123 455566666
Q ss_pred CCCCceEeeeccccccccCCCCCCeeeCCCCCEE
Q 007338 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 367 (607)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~ 367 (607)
++.....+......... ..+.|+|++..+
T Consensus 300 ~~~~~~~l~~~~~~~~v-----~~~~~sp~~~~~ 328 (402)
T 2aq5_A 300 EAPFLHYLSMFSSKESQ-----RGMGYMPKRGLE 328 (402)
T ss_dssp STTCEEEEEEECCSSCC-----SEEEECCGGGSC
T ss_pred CCcceEeecccccCCcc-----cceEEecccccc
Confidence 31112333221111111 127888888754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00031 Score=71.67 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=39.9
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC---------ccccccccceEEec-CCeE
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD---------ICLNAVFGSFVWVN-NSTL 100 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~---------~~~~~~~~~~~Wsp-d~~~ 100 (607)
.+....||| ||+.||.... ...|.++|+.+++......... ......+..+.|+| ++++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGS----------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp CEEEEEECTTTCCEEEEEET----------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred cEEEEEEecCCCCEEEEEcC----------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 689999999 9998877653 2568888998876533321000 00112256888998 4666
Q ss_pred EEEE
Q 007338 101 LIFT 104 (607)
Q Consensus 101 l~~~ 104 (607)
++..
T Consensus 115 l~s~ 118 (408)
T 4a11_B 115 FTSS 118 (408)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.1e-05 Score=73.57 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=47.4
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
+.+.++|+. .......|.|+|||+.|+|+.. ....|++++. +|+.+.+..... ....+.|+++
T Consensus 34 ~~~~~~l~~--~~~~~egp~~~~~g~~l~~~d~---------~~~~i~~~~~-~g~~~~~~~~~~-----~~~gl~~d~d 96 (305)
T 3dr2_A 34 DARLLTLYD--QATWSEGPAWWEAQRTLVWSDL---------VGRRVLGWRE-DGTVDVLLDATA-----FTNGNAVDAQ 96 (305)
T ss_dssp TCCCEEEEC--CCSSEEEEEEEGGGTEEEEEET---------TTTEEEEEET-TSCEEEEEESCS-----CEEEEEECTT
T ss_pred CCceEEEec--CCcCccCCeEeCCCCEEEEEEC---------CCCEEEEEeC-CCCEEEEeCCCC-----ccceeeECCC
Confidence 556666762 3335678999999999988764 2467899998 466555543222 1457889999
Q ss_pred CeEEEE
Q 007338 98 STLLIF 103 (607)
Q Consensus 98 ~~~l~~ 103 (607)
+++++.
T Consensus 97 G~l~v~ 102 (305)
T 3dr2_A 97 QRLVHC 102 (305)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 987665
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-05 Score=78.00 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=80.6
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
..+..++|+|+++.++++... ...|.+||+.+++........ .-...+..+.|+|||+
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGC------------DNVILVWDVGTGAAVLTLGPD----------VHPDTIYSVDWSRDGA 189 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEET------------TSCEEEEETTTTEEEEEECTT----------TCCSCEEEEEECTTSS
T ss_pred CeEEEEEECcCCCCEEEEEcC------------CCEEEEEECCCCCccEEEecC----------CCCCceEEEEECCCCC
Confidence 356789999999655555432 136899999877544322000 0011234599999998
Q ss_pred ceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee-eecC-cccceeeEcCCCcEEEEEEeccccceEEEEEcCC
Q 007338 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l-~~~~-~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~ 332 (607)
. |+.. . ....+.+++. ..+.....+ .... .....+.|+||+..|+.... ......|.++|+.
T Consensus 190 ~-l~~~-~-----------~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 190 L-ICTS-C-----------RDKRVRVIEP--RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTK 253 (402)
T ss_dssp C-EEEE-E-----------TTSEEEEEET--TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETT
T ss_pred E-EEEE-e-----------cCCcEEEEeC--CCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCc
Confidence 4 2211 1 1134556653 222111222 1222 23677899999987665421 1122467788887
Q ss_pred CCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 333 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+.+ .+..+....... +...+.|+|+|+.+++..
T Consensus 254 ~~~-~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 254 HLE-EPLSLQELDTSS-----GVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp BCS-SCSEEEECCCCS-----SCEEEEEETTTTEEEEEE
T ss_pred ccc-CCceEEeccCCC-----ceeEEEEcCCCCEEEEEE
Confidence 742 212222111111 111278999999877654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0001 Score=76.42 Aligned_cols=252 Identities=13% Similarity=0.127 Sum_probs=135.1
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
..|+|-|+. +|+..++..+.. ...+...+|||||++||.... ...|.++|+.+++..+.......
T Consensus 125 ~tV~lWd~~----tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~----------Dg~v~iWd~~~~~~~~~~~~h~~ 190 (420)
T 4gga_A 125 NSVYLWSAS----SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS----------SAEVQLWDVQQQKRLRNMTSHSA 190 (420)
T ss_dssp TEEEEEETT----TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEECC----CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC----------CCeEEEEEcCCCcEEEEEeCCCC
Confidence 347777876 777766654433 235899999999999887553 24678889998876433222221
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+.| ++++++....+ ..++..+
T Consensus 191 ----~v~~~s~--~~~~l~sgs~d-------------------------------------------------~~i~~~d 215 (420)
T 4gga_A 191 ----RVGSLSW--NSYILSSGSRS-------------------------------------------------GHIHHHD 215 (420)
T ss_dssp ----CEEEEEE--ETTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----ceEEEee--CCCEEEEEeCC-------------------------------------------------CceeEee
Confidence 1334444 45565543210 1122222
Q ss_pred C-CC--CeeecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccc
Q 007338 164 L-DG--TAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (607)
Q Consensus 164 ~-~g--~~~~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (607)
. .. ....+. .........|+|+|++++....+ ..+.+|+..+++...... .....
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~--------~~~~~ 274 (420)
T 4gga_A 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPL--------QTFTQ 274 (420)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCS--------EEECC
T ss_pred ecccceeeEEecccccceeeeeecCCCCeeeeeecc-------------ccceEEeeccccccceee--------eeecc
Confidence 2 11 111222 22345678999999998877542 257788887653211000 00000
Q ss_pred ccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEec
Q 007338 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (607)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~ 319 (607)
....+..+.|+|++...++... +.. ...+.+++. .+| +...............|++++..++.....
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~--gs~--------D~~I~iwd~--~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGG--GTS--------DRHIRIWNV--CSG-ACLSAVDAHSQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEE--CTT--------TCEEEEEET--TTT-EEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred cCCceeeeeeCCCcccEEEEEe--ecC--------CCEEEEEeC--Ccc-ccceeeccccceeeeeecCCCCeEEEEEec
Confidence 0112335889998886543221 111 124556664 233 222222333456678899999887765433
Q ss_pred cccceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 320 KTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 320 ~~~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.++ .|.+.|+.+.+ ....+.. ..+.. +.|+|||+.|+-..
T Consensus 342 ~d~--~I~iwd~~~~~-~v~~l~gH~~~V~~---------l~~spdg~~l~S~s 383 (420)
T 4gga_A 342 AQN--QLVIWKYPTMA-KVAELKGHTSRVLS---------LTMSPDGATVASAA 383 (420)
T ss_dssp TTC--CEEEEETTTCC-EEEEECCCSSCEEE---------EEECTTSSCEEEEE
T ss_pred CCC--EEEEEECCCCc-EEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 333 56667877631 1222221 12333 78999999776544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.9e-05 Score=76.77 Aligned_cols=126 Identities=8% Similarity=0.098 Sum_probs=63.8
Q ss_pred ceeeeeeCCCC-ceEEEEEccCCCccccCCCcCCccEEEEeCCCCee-----EEeccCCCCCCCCcccccccCCCCccee
Q 007338 176 VYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-----RELCDLPPAEDIPVCYNSVREGMRSISW 249 (607)
Q Consensus 176 ~~~~~~~SpDg-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~w 249 (607)
.+..++|+|++ +.|+..+.+ ..|.+||+.+++. +.+.......... .+......+..+.|
T Consensus 228 ~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~ 293 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASALCDRHSKLFEEPEDPSNRS-FFSEIISSISDVKF 293 (447)
T ss_dssp CEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSSSCTTCEEECCC-----CC-HHHHHTTCEEEEEE
T ss_pred ceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCccccceeeEeccCCCccccc-cccccCceEEEEEE
Confidence 46789999998 666666532 3688999987653 3332200000000 00000012346999
Q ss_pred ecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcc---------------cceeeEcCCCcEEE
Q 007338 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR---------------FRSVSWCDDSLALV 314 (607)
Q Consensus 250 spdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~---------------~~~~~ws~Dg~~l~ 314 (607)
+|||+.. + ... . ..+.+++. ...+.....+...... ...+.|+|||..|+
T Consensus 294 s~~g~~l-~--~~~----------~-~~v~iwd~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~ 358 (447)
T 3dw8_B 294 SHSGRYM-M--TRD----------Y-LSVKVWDL-NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM 358 (447)
T ss_dssp CTTSSEE-E--EEE----------S-SEEEEEET-TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE
T ss_pred CCCCCEE-E--Eee----------C-CeEEEEeC-CCCccccceeeccccccccccccccccccccceEEEECCCCCEEE
Confidence 9999832 1 111 1 34555554 1112122222222111 11389999999876
Q ss_pred EEEeccccceEEEEEcCCCC
Q 007338 315 NETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 315 ~~~~~~~~~~~l~~~dl~~~ 334 (607)
.... + ..|.++|+.++
T Consensus 359 s~s~--d--g~v~iwd~~~~ 374 (447)
T 3dw8_B 359 TGSY--N--NFFRMFDRNTK 374 (447)
T ss_dssp EECS--T--TEEEEEETTTC
T ss_pred Eecc--C--CEEEEEEcCCC
Confidence 6432 2 35667788773
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00021 Score=70.94 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=42.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||||++|+-.+. ...|.++|+.+++..+....... .+..+.|+|++++++..
T Consensus 67 ~v~~~~~s~dg~~l~s~s~----------D~~v~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~ 125 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW----------DKTLRLWDVATGETYQRFVGHKS----DVMSVDIDKKASMIISG 125 (319)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeC----------CCEEEEEECCCCCeeEEEccCCC----cEEEEEEcCCCCEEEEE
Confidence 5788999999998876543 25788889999876433222221 26688999998887764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-05 Score=79.18 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=48.6
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~ 85 (607)
|.|-|+. +++.+.... ....+....|||||++|+..+. ..+.+++..+++.. ..+....
T Consensus 159 i~iwd~~----~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~-----------~~~~~~~~~~~~~~~~~~~~~~--- 218 (365)
T 4h5i_A 159 MRIIDPS----DLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG-----------SSLEVISTVTGSCIARKTDFDK--- 218 (365)
T ss_dssp EEEEETT----TTEEEEEEE--CSSCCCEEEECTTSSEEEEECS-----------SCEEEEETTTCCEEEEECCCCT---
T ss_pred EEEeECC----CCcEEEEeC--CCCceEEEEEccCCceEEeccc-----------eeEEEEEeccCcceeeeecCCC---
Confidence 5555665 444443332 2335899999999999887652 24666777777643 2222111
Q ss_pred cccccceEEecCCeEEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~ 104 (607)
...+..+.|+||+++++..
T Consensus 219 ~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp TEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEE
Confidence 1225688999999877764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0007 Score=67.15 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=62.7
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
......++|+++.|+....+ ..+.+||+.+.....+..... ........|++++..
T Consensus 130 ~~~~~~~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 130 DVLSVAFSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYTVQDESH-----------SEWVSCVRFSPNSSN 185 (340)
T ss_dssp CEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSSC-----------SSCEEEEEECSCSSS
T ss_pred ceeEEEEeecCccceeecCC-------------CeEEEEEeCCCceEEEEeccc-----------cCcccceEEccCCCC
Confidence 34567889999888776532 257788887665443322100 011223677777664
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
.++..... ...+.+++. ..+.....+......+..++|+|||..|+.... + ..+.+.|+.+
T Consensus 186 ~~~~s~~~-----------d~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--D--g~i~iwd~~~ 246 (340)
T 4aow_A 186 PIIVSCGW-----------DKLVKVWNL--ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK--D--GQAMLWDLNE 246 (340)
T ss_dssp CEEEEEET-----------TSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--T--CEEEEEETTT
T ss_pred cEEEEEcC-----------CCEEEEEEC--CCCceeeEecCCCCcEEEEEECCCCCEEEEEeC--C--CeEEEEEecc
Confidence 33322211 122444442 222111223233456778999999998776542 2 2566668776
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00014 Score=73.16 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=38.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||||++||..+. ++ .+.++++.+++...+..... ....+..+.|+|++++|+..
T Consensus 63 ~v~~~~~sp~g~~l~s~s~--------D~--~v~iw~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~ 123 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASF--------DA--TTCIWKKNQDDFECVTTLEG--HENEVKSVAWAPSGNLLATC 123 (345)
T ss_dssp CEEEEEECTTSSEEEEEET--------TS--CEEEEEECCC-EEEEEEECC--CSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEEECCCCCEEEEEEC--------CC--cEEEEEccCCCeEEEEEccC--CCCCceEEEEeCCCCEEEEE
Confidence 5889999999999887653 33 45566766664332211111 11126789999999887764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-05 Score=84.13 Aligned_cols=141 Identities=8% Similarity=0.073 Sum_probs=76.4
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee--------EEeccCCCCCCCCcccccccCCCCcc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--------RELCDLPPAEDIPVCYNSVREGMRSI 247 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (607)
.+..++|||||++|+..+.+ ..|.+|++.++.. ..+.... .+-...+..+
T Consensus 131 sv~svafSPDG~~LAsgs~D-------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~---------~gh~~~V~sV 188 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNED-------------GELQFFSIRKNSENTPEFYFESSIRLSD---------AGSKDWVTHI 188 (588)
T ss_dssp CEEEEEECSSSSCEEEEETT-------------SEEEEEECCCCTTTCCCCEEEEEEECSC---------TTCCCCEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCccccccceeeeeeeccc---------ccccccEEEE
Confidence 36789999999999988642 3788999988742 3332100 0001224469
Q ss_pred eeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCc----eeee-ecCcccceeeEcCCCcEEEEEEecccc
Q 007338 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP----EILH-KLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 248 ~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~l~-~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
+||||| .+. .. . ...+.+|+. .+.+. +.+. .....+..++|+ |..++....
T Consensus 189 awSPdg--Laa---ss--~--------D~tVrlWd~---~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~---- 244 (588)
T 2j04_A 189 VWYEDV--LVA---AL--S--------NNSVFSMTV---SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP---- 244 (588)
T ss_dssp EEETTE--EEE---EE--T--------TCCEEEECC---CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS----
T ss_pred EEcCCc--EEE---Ee--C--------CCeEEEEEC---CCCccccceeeecccccCcEEEEEEE--CCEEEEEeC----
Confidence 999998 221 11 1 123555553 22121 1232 233467889999 455555431
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeee--CCCCCEEEEEe
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR--TSTGTNVIAKI 371 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~dg~~~~~~~ 371 (607)
..+.+.|+.++ ....+.-+ ....+.+ +.+ +||+..++...
T Consensus 245 -~tIkLWd~~~~--~~~~~~~g-h~~~V~~-----va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 245 -GYVHKIDLKNY--SISSLKTG-SLENFHI-----IPLNHEKESTILLMSN 286 (588)
T ss_dssp -SEEEEEETTTT--EEEEEECS-CCSCCCE-----EEETTCSSCEEEEECS
T ss_pred -CeEEEEECCCC--eEEEEEcC-CCceEEE-----EEeeeCCCCCEEEEEc
Confidence 26777788773 32222211 1111111 678 88887655443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.3e-05 Score=75.43 Aligned_cols=228 Identities=10% Similarity=-0.024 Sum_probs=121.6
Q ss_pred eEEEeccCCCCCCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
|.+.++. +...+.+..... ...+....|||||+.|+.... ...|.++|+.+.....+..+..
T Consensus 143 i~iwd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~h~~--- 205 (383)
T 3ei3_B 143 TTLRDFS----GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----------TGRLLLLGLDGHEIFKEKLHKA--- 205 (383)
T ss_dssp EEEEETT----SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET----------TSEEEEEETTSCEEEEEECSSS---
T ss_pred EEEEECC----CCceEEEeccCCCCCCeEEEEECCCCCEEEEECC----------CCCEEEEECCCCEEEEeccCCC---
Confidence 5566664 444445543221 124789999999998876543 3688999996555555543332
Q ss_pred cccccceEEecCCe-EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 86 NAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
.+..+.|+|+++ +++....+ ..|.++++
T Consensus 206 --~v~~~~~~~~~~~~l~s~~~d-------------------------------------------------~~i~iwd~ 234 (383)
T 3ei3_B 206 --KVTHAEFNPRCDWLMATSSVD-------------------------------------------------ATVKLWDL 234 (383)
T ss_dssp --CEEEEEECSSCTTEEEEEETT-------------------------------------------------SEEEEEEG
T ss_pred --cEEEEEECCCCCCEEEEEeCC-------------------------------------------------CEEEEEeC
Confidence 267899999987 66653210 12223333
Q ss_pred -C----CCe-eecCCCCceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee-EEeccCCCCCCCCcc
Q 007338 165 -D----GTA-KDFGTPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVC 236 (607)
Q Consensus 165 -~----g~~-~~lt~~~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~ 236 (607)
+ +.. ..+.....+..++|+| ||++|+....+ ..|.+||+.+++. ..+...+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~----- 296 (383)
T 3ei3_B 235 RNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR-------------NEIRVYSSYDWSKPDQIIIHPHRQ----- 296 (383)
T ss_dssp GGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS-------------SEEEEEETTBTTSCSEEEECCBCC-----
T ss_pred CCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC-------------CcEEEEECCCCccccccccccccc-----
Confidence 2 211 1222334567899999 99998877542 3788999986532 2222100000
Q ss_pred cccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee--cCcccceeeEcCCCcEEE
Q 007338 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALV 314 (607)
Q Consensus 237 ~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~--~~~~~~~~~ws~Dg~~l~ 314 (607)
..........|+|++.. ..+.....+.. .......+.+++. ..+.....+.. .......++|+|||..|+
T Consensus 297 --~~~~~~~~~~~~p~~~~--~~~~~s~dg~~--s~s~d~~i~iwd~--~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 297 --FQHLTPIKATWHPMYDL--IVAGRYPDDQL--LLNDKRTIDIYDA--NSGGLVHQLRDPNAAGIISLNKFSPTGDVLA 368 (383)
T ss_dssp --CTTSCCCCCEECSSSSE--EEEECBCCTTT--CTTCCCCEEEEET--TTCCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred --cccccceEEeccCCCCc--eEEEecCCccc--ccCCCCeEEEEec--CCCceeeeecCCCCCceEEEEEEecCccEEE
Confidence 00011123577777762 22222211111 2223345677774 33322233332 223455679999999877
Q ss_pred EEEeccccceEEEEEcCCC
Q 007338 315 NETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 315 ~~~~~~~~~~~l~~~dl~~ 333 (607)
... ++ .|.+.|+++
T Consensus 369 s~s---d~--~i~iw~~~~ 382 (383)
T 3ei3_B 369 SGM---GF--NILIWNRED 382 (383)
T ss_dssp EEE---TT--EEEEEECC-
T ss_pred Eec---CC--cEEEEecCC
Confidence 653 23 455556543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-05 Score=77.45 Aligned_cols=80 Identities=10% Similarity=0.043 Sum_probs=49.3
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccC---CCEEEEEeecCcccccCCCceeEEEEECCCCc-e-eecccC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-A-KPLFES 80 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~-~~lt~~ 80 (607)
.|.|.++. +++...+..+.....+....|+|+ |+.|+.... ...|.++|+.+++ . ..+..+
T Consensus 45 ~v~iw~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~ 110 (357)
T 3i2n_A 45 VIQLYEIQ----HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF----------GGNLHIWNLEAPEMPVYSVKGH 110 (357)
T ss_dssp EEEEEEEC----SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET----------TSCEEEECTTSCSSCSEEECCC
T ss_pred EEEEEeCC----CCcccceeeecccCcEEEEEEcCCCCCCceEEEecC----------CCeEEEEeCCCCCccEEEEEec
Confidence 47777876 666554443333336899999999 677766542 3578888998876 3 333322
Q ss_pred CCccccccccce------EEecCCeEEEEE
Q 007338 81 PDICLNAVFGSF------VWVNNSTLLIFT 104 (607)
Q Consensus 81 ~~~~~~~~~~~~------~Wspd~~~l~~~ 104 (607)
.. .+..+ .|+|++++++..
T Consensus 111 ~~-----~v~~~~~~~~~~~s~~~~~l~~~ 135 (357)
T 3i2n_A 111 KE-----IINAIDGIGGLGIGEGAPEIVTG 135 (357)
T ss_dssp SS-----CEEEEEEESGGGCC-CCCEEEEE
T ss_pred cc-----ceEEEeeccccccCCCccEEEEE
Confidence 22 14445 456788777664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00071 Score=72.86 Aligned_cols=205 Identities=8% Similarity=-0.001 Sum_probs=111.4
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
...+.|+.|...++|++.+ +...|+++|+++++.......... ...+.+|||++++|....
T Consensus 156 P~~~~~~~d~~~~~~V~~~--------~~~~V~viD~~t~~v~~~i~~g~~-----p~~v~~SpDGr~lyv~~~------ 216 (567)
T 1qks_A 156 PTQQMNDWDLENLFSVTLR--------DAGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVIGR------ 216 (567)
T ss_dssp CSSCCSCCCGGGEEEEEET--------TTTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEEET------
T ss_pred ccccccccCCCceEEEEeC--------CCCeEEEEECCCCeEEEEEeCCCC-----ccceEECCCCCEEEEEcC------
Confidence 4567888887777888764 457999999999986532222211 347889999998776420
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC---CCC-eeecCCCCceeeeeeC----C
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGT-AKDFGTPAVYTAVEPS----P 184 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~-~~~lt~~~~~~~~~~S----p 184 (607)
...|.++|+ +++ ..++..+..-..+.+| |
T Consensus 217 -------------------------------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p 253 (567)
T 1qks_A 217 -------------------------------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW 253 (567)
T ss_dssp -------------------------------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC
T ss_pred -------------------------------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC
Confidence 123455555 222 2233333334578999 7
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc--cCC--CCcceeecCCCceEEEE
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV--REG--MRSISWRADKPSTLYWV 260 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~--~~~--~~~~~wspdg~~~l~~~ 260 (607)
||+++++.... +..+.++|..+.+.......... ..+.. ... +..+..|++++. + ++
T Consensus 254 DGk~l~v~n~~------------~~~v~ViD~~t~~~~~~i~~~~~-----~~~~~~~~p~~rva~i~~s~~~~~-~-vv 314 (567)
T 1qks_A 254 EDKYAIAGAYW------------PPQYVIMDGETLEPKKIQSTRGM-----TYDEQEYHPEPRVAAILASHYRPE-F-IV 314 (567)
T ss_dssp TTTEEEEEEEE------------TTEEEEEETTTCCEEEEEECCEE-----CTTTCCEESCCCEEEEEECSSSSE-E-EE
T ss_pred CCCEEEEEEcc------------CCeEEEEECCCCcEEEEEecccc-----ccccccccCCCceEEEEEcCCCCE-E-EE
Confidence 99999888542 23678889877654443211000 00000 001 113555666552 1 22
Q ss_pred EeecCCCCccccCCCceEEeccCCCCCCCCceeee--ecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCC
Q 007338 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~--~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
.. .....+++++. .+. +...+. ..........|+|||++|+.... ..+.|.++|+++.
T Consensus 315 ~~----------~~~g~v~~vd~--~~~-~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~ 374 (567)
T 1qks_A 315 NV----------KETGKILLVDY--TDL-NNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEG 374 (567)
T ss_dssp EE----------TTTTEEEEEET--TCS-SEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTT
T ss_pred Ee----------cCCCeEEEEec--CCC-ccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCC
Confidence 11 22234555442 110 101111 11222346789999997654432 2347999999883
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0014 Score=66.66 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=34.9
Q ss_pred EEccCCCEEEEEeec-CcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 37 SWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 37 ~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+|||++ +|+.+. .. +....|+++|+++++..... +.+. .. .+.+|||++.+|.+
T Consensus 27 ~~~~~~~~-~yv~~~~~~-----~~~~~v~v~D~~t~~~~~~i--~~g~---~p-~i~~spDg~~lyv~ 83 (373)
T 2mad_H 27 APGADGRR-SYINLPAHH-----SAIIQQWVLDAGSGSILGHV--NGGF---LP-NPVAAHSGSEFALA 83 (373)
T ss_pred cCCCCCCE-EEEeCCccc-----CCccEEEEEECCCCeEEEEe--cCCC---CC-CeEECCCCCEEEEE
Confidence 34589965 676653 10 11118899999998864322 2211 13 88999999887775
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.5e-07 Score=92.58 Aligned_cols=115 Identities=15% Similarity=0.262 Sum_probs=74.3
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCC-------cCCCCCCchhHHHh
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-------EFSGMTPTSSLIFL 552 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~-------~~~~~~~~~~q~la 552 (607)
...|.++|++.||.+|+|+|++|++.+ + +.|+||++|+...+ ...+.+.+. .|........+.||
T Consensus 90 ~~~e~v~~~~~~g~~l~~~l~~P~~~~--~--~~P~Vv~~HG~g~~----~~~~~~~~g~~~~~~~~y~~~~~~~a~~la 161 (398)
T 3nuz_A 90 YRLEKWEFYPLPKCVSTFLVLIPDNIN--K--PVPAILCIPGSGGN----KEGLAGEPGIAPKLNDRYKDPKLTQALNFV 161 (398)
T ss_dssp EEEEEEEECCSTTBCEEEEEEEESSCC--S--CEEEEEEECCTTCC----HHHHHTCCCSSSTTCCSTTCTTTCHHHHHH
T ss_pred EEEEEEEEEcCCCcEEEEEEEeCCCCC--C--CccEEEEEcCCCCC----cccccccccccccccccccchHHHHHHHHH
Confidence 467889999999999999999998752 3 45999999864110 000000000 01000013468999
Q ss_pred ccCeEEEeCCCCceec-cCCC--------------------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 553 ARRFAVLAGPSIPIIG-EGLW--------------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 553 ~~GY~Vl~~~~~~~~g-~g~~--------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++||+|+. ++.+..| ++.. .+..+....+.|++++++||.++..+|.+++
T Consensus 162 ~~Gy~Vl~-~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI 232 (398)
T 3nuz_A 162 KEGYIAVA-VDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRI 232 (398)
T ss_dssp TTTCEEEE-ECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred HCCCEEEE-ecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 99999998 5543333 1111 1223444566899999999999999998875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-05 Score=82.32 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=41.2
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc-cccccceEEecCCeEEEEE
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL-NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~-~~~~~~~~Wspd~~~l~~~ 104 (607)
...+...+|||||++||-.+. + ..+.++|.++ -...+. . ...+ ...+..++|||||++|+..
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~--------d--g~V~iwd~~~-~l~~l~-~-~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN--------N--GNVSVFKDNK-MLTNLD-S-KGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET--------T--SCEEEEETTE-EEEECC-C-SSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeC--------C--CcEEEEeCCc-eeeecc-C-CCccccccEEEEEEcCCCCEEEEE
Confidence 457999999999999998764 2 3566778654 223332 1 2110 1125689999999988875
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-06 Score=83.74 Aligned_cols=80 Identities=11% Similarity=0.185 Sum_probs=45.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCC-CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc----eeecccC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFES 80 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~----~~~lt~~ 80 (607)
.|.|.++. ++..+.+..+. ....+....|||||++|+.... ...|.++|+.+++ ...+..+
T Consensus 34 ~i~iw~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----------d~~v~vwd~~~~~~~~~~~~~~~~ 99 (377)
T 3dwl_C 34 QVELYEQD----GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ----------DRNAYVYEKRPDGTWKQTLVLLRL 99 (377)
T ss_dssp CBCEEEEE----TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET----------TSSEEEC------CCCCEEECCCC
T ss_pred EEEEEEcc----CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC----------CCeEEEEEcCCCCceeeeeEeccc
Confidence 35666665 44223333222 2235889999999999887653 2467888888876 3333322
Q ss_pred CCccccccccceEEecCCeEEEEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.. .+..+.|+|++++++..
T Consensus 100 ~~-----~v~~~~~~~~~~~l~~~ 118 (377)
T 3dwl_C 100 NR-----AATFVRWSPNEDKFAVG 118 (377)
T ss_dssp SS-----CEEEEECCTTSSCCEEE
T ss_pred CC-----ceEEEEECCCCCEEEEE
Confidence 22 26688999998876664
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-05 Score=77.26 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=79.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCC-CCCcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.|.|-|+. +++...+..+. ....+....||| ||+.|+-.+. + ..|.++|++++..+.+.....
T Consensus 143 ~i~lWd~~----~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~--------D--~~v~iwd~~~~~~~~~~~~~~- 207 (435)
T 4e54_B 143 DIMLWNFG----IKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM--------E--GTTRLQDFKGNILRVFASSDT- 207 (435)
T ss_dssp CEEEECSS----CCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS--------S--SCEEEEETTSCEEEEEECCSS-
T ss_pred EEEEEECC----CCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC--------C--CEEEEeeccCCceeEEeccCC-
Confidence 35666665 44333333222 233689999999 6777654432 2 457778998876655543222
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
....+..+.|+|++++++.... ...|.+++
T Consensus 208 -~~~~~~~~~~~~~~~~l~~g~~-------------------------------------------------dg~i~~wd 237 (435)
T 4e54_B 208 -INIWFCSLDVSASSRMVVTGDN-------------------------------------------------VGNVILLN 237 (435)
T ss_dssp -CSCCCCCEEEETTTTEEEEECS-------------------------------------------------SSBEEEEE
T ss_pred -CCccEEEEEECCCCCEEEEEeC-------------------------------------------------CCcEeeec
Confidence 1112457889999888776411 12344455
Q ss_pred CCC-CeeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 164 LDG-TAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 164 ~~g-~~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
+.+ ....+.. ...+..++|+|+++.++++...+ ..|.+||+...
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d------------~~v~iwd~~~~ 283 (435)
T 4e54_B 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVD------------QTVKIWDLRQV 283 (435)
T ss_dssp SSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT------------SBCCEEETTTC
T ss_pred cCcceeEEEecccceEEeeeecCCCceEEEEecCc------------ceeeEEecccc
Confidence 544 3333332 23567899999998777665422 25678888754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00013 Score=71.96 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=42.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|+|||+.|+..+. ...|.++|+.+++... +..+.. .+..+.|+|++++++..
T Consensus 57 ~v~~~~~~~~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg 115 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD----------DFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSG 115 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET----------TSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEE
T ss_pred cEEEEEEeCCCCEEEEECC----------CCEEEEEECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEE
Confidence 5788999999999877653 3578888999887643 322222 26789999998887764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.7e-05 Score=78.16 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=40.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC--CCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~--~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||||+.|+++... + ..|.++|+. +++..+...... ....+..+.|+|++++|+..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~-------d--g~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADS-------D--KSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGG-------G--TEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECC-------C--CeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEE
Confidence 47889999999998776643 2 456677777 666543321100 01125689999998887764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00024 Score=78.93 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=42.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||||+.|+..+. ...|.++|+.+++.. .+..+.. .+..+.|+|++++++..
T Consensus 432 ~v~~v~~s~~g~~l~sgs~----------Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~ 490 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSW----------DGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSA 490 (694)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEE
Confidence 5889999999998876543 357888899988754 3333322 26789999998877764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0001 Score=74.54 Aligned_cols=185 Identities=12% Similarity=0.097 Sum_probs=108.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~~~~~~ 109 (607)
.+....|+||++.|+..+. ...|.++|+++++..+....... .+..+.|+|+ +.+++....
T Consensus 156 ~v~~~~~~~~~~~l~t~s~----------D~~v~lwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~g~~l~sgs~--- 218 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASG----------DGTCALWDVESGQLLQSFHGHGA----DVLCLDLAPSETGNTFVSGGC--- 218 (354)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECCCSSCCEEEEEET---
T ss_pred cEEEEEEeCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEcCCCC----CeEEEEEEeCCCCCEEEEEeC---
Confidence 4788999999998876542 35788889999886543322221 1456677764 566665321
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eecCC-CCceeeeeeCCCC
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQ 186 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~lt~-~~~~~~~~~SpDg 186 (607)
...+.++|+ +++. ..+.. ...+..++|+|+|
T Consensus 219 ----------------------------------------------Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 219 ----------------------------------------------DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252 (354)
T ss_dssp ----------------------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred ----------------------------------------------CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC
Confidence 123444455 4432 22322 2356789999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
+.|+..+.+ ..+.+||+.++....+.... ....+...+.|+|+|+. +.....
T Consensus 253 ~~l~s~s~D-------------~~v~lwd~~~~~~~~~~~~~----------~~~~~~~~~~~s~~g~~--l~~g~~--- 304 (354)
T 2pbi_B 253 DAFASGSDD-------------ATCRLYDLRADREVAIYSKE----------SIIFGASSVDFSLSGRL--LFAGYN--- 304 (354)
T ss_dssp SEEEEEETT-------------SCEEEEETTTTEEEEEECCT----------TCCSCEEEEEECTTSSE--EEEEET---
T ss_pred CEEEEEeCC-------------CeEEEEECCCCcEEEEEcCC----------CcccceeEEEEeCCCCE--EEEEEC---
Confidence 988877542 36889999876543322100 00112335889999982 222111
Q ss_pred CCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEE
Q 007338 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~ 317 (607)
...+.+++. ..+.....+......+..++|+|||..|+...
T Consensus 305 --------d~~i~vwd~--~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 305 --------DYTINVWDV--LKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp --------TSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred --------CCcEEEEEC--CCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 124555553 33322334444556788899999999877654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00075 Score=72.67 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=37.4
Q ss_pred ceEEEEeCC-CC---eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 157 AQLVLGSLD-GT---AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 157 ~~l~~~~~~-g~---~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
.+|+++|.. .+ ...+........+.|+|||++++++... ..+|.++|++++++...
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------------sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------------RNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEE
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------------CCeEEEEECCCCcEEEE
Confidence 567777762 22 2223333445678999999999988653 23789999998876544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00081 Score=68.45 Aligned_cols=91 Identities=13% Similarity=-0.123 Sum_probs=50.1
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC-Cccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~-~~~~ 85 (607)
+++.|+. +++.. ..++.+... .+.+||||++|++.........--.....|.++|+++++...-.... ....
T Consensus 49 v~v~D~~----t~~~~--~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 49 QWVLDAG----SGSIL--GHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEECC----CCeEE--EEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 4555654 44433 224444344 99999999998776431100000012356889999987764322111 0000
Q ss_pred --cccccceEEecCCeEEEEE
Q 007338 86 --NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 86 --~~~~~~~~Wspd~~~l~~~ 104 (607)
......+.|+||++.++++
T Consensus 122 ~~g~~p~~~~~spDG~~l~v~ 142 (373)
T 2mad_H 122 DVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred ccCCCccceEECCCCCEEEEE
Confidence 0113478999998877765
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=98.29 E-value=6.5e-07 Score=86.67 Aligned_cols=86 Identities=8% Similarity=0.020 Sum_probs=45.5
Q ss_pred CCceeeEecCCCCCCcccCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCc
Q 007338 461 LKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE 539 (607)
Q Consensus 461 ~~~~~~Lt~~~~~~~~~~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~ 539 (607)
.|..+.++..+. ..+.+.. ..+.|++ ..||.+|+|+|++|++-. |.|+||++|++ ++ +.
T Consensus 10 ~~~~r~~~~~~~-~~~~~~~~~e~~~~~-~~dG~~i~g~l~~P~~~~-----~~p~Vl~~HG~------------g~-~~ 69 (259)
T 4ao6_A 10 HGSMRHQMSWNG-KDERKLSVQERGFSL-EVDGRTVPGVYWSPAEGS-----SDRLVLLGHGG------------TT-HK 69 (259)
T ss_dssp -------CEECS-CCEEETTEEEEEEEE-EETTEEEEEEEEEESSSC-----CSEEEEEEC-------------------
T ss_pred cCcceeeeccCC-CccccCCceEEEEEE-eeCCeEEEEEEEeCCCCC-----CCCEEEEeCCC------------cc-cc
Confidence 566666665543 2222322 3334444 579999999999998622 34999998853 11 11
Q ss_pred CCCCCCchhHHHhccCeEEEeCCCCcee
Q 007338 540 FSGMTPTSSLIFLARRFAVLAGPSIPII 567 (607)
Q Consensus 540 ~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (607)
....+....+.||++||+|+. ++.+..
T Consensus 70 ~~~~~~~~a~~la~~Gy~Vl~-~D~rG~ 96 (259)
T 4ao6_A 70 KVEYIEQVAKLLVGRGISAMA-IDGPGH 96 (259)
T ss_dssp --CHHHHHHHHHHHTTEEEEE-ECCCC-
T ss_pred cchHHHHHHHHHHHCCCeEEe-eccCCC
Confidence 110111236899999999998 655433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00084 Score=65.86 Aligned_cols=143 Identities=7% Similarity=-0.069 Sum_probs=76.0
Q ss_pred ceEEEEeC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCc
Q 007338 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (607)
Q Consensus 157 ~~l~~~~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (607)
.+|++++. +++.+.+..+.....+.++|||+ +++... ..|+++|.++++.+.+....... +
T Consensus 35 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~~--------------~~l~~~d~~~g~~~~~~~~~~~~--~- 96 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATIG--------------TKFCALNWKEQSAVVLATVDNDK--K- 96 (297)
T ss_dssp TEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEET--------------TEEEEEETTTTEEEEEEECCTTC--S-
T ss_pred CEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEEC--------------CeEEEEECCCCcEEEEEecCCCC--C-
Confidence 35667777 44444443344556789999999 444431 26899999998887775421100 0
Q ss_pred ccccccCCCCcceeecCCCceEEEEEeecCCCC-ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEE
Q 007338 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDA-NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~ 314 (607)
...+..+.++|||+ + |+........ .........++.++. +| +...+.........++|+|||+.++
T Consensus 97 -----~~~~~di~~d~dG~--l-~~~~~~~~~~~~~~~~~~~~l~~~d~---~g-~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 97 -----NNRFNDGKVDPAGR--Y-FAGTMAEETAPAVLERHQGALYSLFP---DH-HVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp -----SEEEEEEEECTTSC--E-EEEEEECCSBTTBCCTTCEEEEEECT---TS-CEEEEEEEESBEEEEEECTTSCEEE
T ss_pred -----CCCCCCEEECCCCC--E-EEecCCcccccccccCCCcEEEEEEC---CC-CEEEEeeccccccceEEcCCCCEEE
Confidence 01123478889987 3 3322221100 000112234665542 22 3333322222345789999998654
Q ss_pred EEEeccccceEEEEEcCC
Q 007338 315 NETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 315 ~~~~~~~~~~~l~~~dl~ 332 (607)
.... ...+|++++++
T Consensus 165 v~~~---~~~~i~~~~~d 179 (297)
T 3g4e_A 165 YIDS---LSYSVDAFDYD 179 (297)
T ss_dssp EEEG---GGTEEEEEEEC
T ss_pred EecC---CCCcEEEEecc
Confidence 4321 22478888764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-05 Score=77.52 Aligned_cols=136 Identities=12% Similarity=0.154 Sum_probs=82.6
Q ss_pred eeEEEeccCCCCCCCeeeeecCC---CCCcccceEEccC----CCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYP---DGAKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~---~~~~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
.|.|.++.. +...+.+..+. ....+....|+|+ |+.|+.... ...|.++|+.+++.....
T Consensus 45 ~v~vw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~ 111 (366)
T 3k26_A 45 RVTLYECHS---QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS----------RGIIRIINPITMQCIKHY 111 (366)
T ss_dssp EEEEEEECG---GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET----------TCEEEEECTTTCCEEEEE
T ss_pred EEEEEEcCC---CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC----------CCEEEEEEchhceEeeee
Confidence 366667651 33344444222 1235889999999 556655442 358899999988765443
Q ss_pred cCCCccccccccceEEec-CCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccc
Q 007338 79 ESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (607)
Q Consensus 79 ~~~~~~~~~~~~~~~Wsp-d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (607)
..... .+..+.|+| ++++++.... ..
T Consensus 112 ~~~~~----~i~~~~~~~~~~~~l~s~~~-------------------------------------------------dg 138 (366)
T 3k26_A 112 VGHGN----AINELKFHPRDPNLLLSVSK-------------------------------------------------DH 138 (366)
T ss_dssp ESCCS----CEEEEEECSSCTTEEEEEET-------------------------------------------------TS
T ss_pred cCCCC----cEEEEEECCCCCCEEEEEeC-------------------------------------------------CC
Confidence 22221 267899999 7787776421 12
Q ss_pred eEEEEeC-CCC-eeec---C-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 158 QLVLGSL-DGT-AKDF---G-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 158 ~l~~~~~-~g~-~~~l---t-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.|.++++ +++ ...+ . ....+..+.|+||+++|+....+ ..|.+||+.+++
T Consensus 139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~ 194 (366)
T 3k26_A 139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKR 194 (366)
T ss_dssp CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHH
T ss_pred eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCc
Confidence 3444455 343 2222 1 22356789999999998877542 368899988654
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-07 Score=93.69 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=71.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.++|++.||.+|.+++++|++.. + +.|+||++|+. ++...+ +...+.|+++||+|+.
T Consensus 67 ~~~~~~~~~~dg~~i~~~~~~P~~~~--~--~~p~vv~~HG~------------g~~~~~----~~~~~~l~~~G~~v~~ 126 (337)
T 1vlq_A 67 EAYDVTFSGYRGQRIKGWLLVPKLEE--E--KLPCVVQYIGY------------NGGRGF----PHDWLFWPSMGYICFV 126 (337)
T ss_dssp EEEEEEEECGGGCEEEEEEEEECCSC--S--SEEEEEECCCT------------TCCCCC----GGGGCHHHHTTCEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEEecCCCC--C--CccEEEEEcCC------------CCCCCC----chhhcchhhCCCEEEE
Confidence 78999999999999999999998752 3 34999998853 111111 2235688999999998
Q ss_pred CCCCceec-cC--CCCc-----------------------hhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIG-EG--LWSN-----------------------WFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g-~g--~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.+..| ++ .... .-....+..|+.++++||.+++.+|.+++
T Consensus 127 -~d~rG~g~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 194 (337)
T 1vlq_A 127 -MDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERI 194 (337)
T ss_dssp -ECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred -ecCCCCCCcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 5443222 11 1011 11224788999999999999988887765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.9e-05 Score=74.94 Aligned_cols=58 Identities=19% Similarity=0.128 Sum_probs=37.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC--cee-ecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAK-PLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g--~~~-~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
.+....|||||++||.... + ..|.++++.++ +.. .+..+.. .+..+.|+++ +++++..
T Consensus 13 ~v~~~~~s~~~~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSS--------D--KTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp CEEEEEECSSSSEEEEEET--------T--SCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred cEEEEEEcCCCCEEEEEEC--------C--CcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEe
Confidence 5889999999999887653 2 35666676643 332 2322222 2668899866 7777764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00015 Score=73.24 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=51.3
Q ss_pred eeEEEeccCCCCCCC---eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 6 GIGIHRLLPDDSLGP---EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~---~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
.|.|.++. +++ ...+.. ....+....|+|||+.|+.... ...|.++|+.+++.........
T Consensus 31 ~v~i~~~~----~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~ 94 (372)
T 1k8k_C 31 EVHIYEKS----GNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGT----------DRNAYVWTLKGRTWKPTLVILR 94 (372)
T ss_dssp EEEEEEEE----TTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEET----------TSCEEEEEEETTEEEEEEECCC
T ss_pred EEEEEeCC----CCcEEeeeeecC--CCCcccEEEEeCCCCEEEEEcC----------CCeEEEEECCCCeeeeeEEeec
Confidence 47777876 553 334432 2236889999999999887653 2467788888876432211111
Q ss_pred ccccccccceEEecCCeEEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....+..+.|+|++++++..
T Consensus 95 --~~~~v~~~~~~~~~~~l~~~ 114 (372)
T 1k8k_C 95 --INRAARCVRWAPNEKKFAVG 114 (372)
T ss_dssp --CSSCEEEEEECTTSSEEEEE
T ss_pred --CCCceeEEEECCCCCEEEEE
Confidence 11126688999998877764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0011 Score=67.04 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=71.8
Q ss_pred EEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCc
Q 007338 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (607)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~ 116 (607)
...|||+++ |+.+... ......|+++|+++++...-...... . .+..|||++.+|.+....
T Consensus 39 ~~~pd~~~v-yV~~~~~----~~~~~~V~ViD~~t~~v~~~I~vG~~-----P-~va~spDG~~lyVan~~~-------- 99 (386)
T 3sjl_D 39 APAPDARRV-YVNDPAH----FAAVTQQFVIDGEAGRVIGMIDGGFL-----P-NPVVADDGSFIAHASTVF-------- 99 (386)
T ss_dssp CCCCCTTEE-EEEECGG----GCSSEEEEEEETTTTEEEEEEEECSS-----C-EEEECTTSSCEEEEEEEE--------
T ss_pred ccCCCCCEE-EEEcCcc----cCCCCEEEEEECCCCeEEEEEECCCC-----C-cEEECCCCCEEEEEcccc--------
Confidence 446999986 5454210 01247999999999886533222221 3 388999988766641000
Q ss_pred cCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe-eec--CC------CCceeeeeeCCCC
Q 007338 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDF--GT------PAVYTAVEPSPDQ 186 (607)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l--t~------~~~~~~~~~SpDg 186 (607)
. +.. .+ .....|.++|. ++++ ..+ .. ...-..+.+||||
T Consensus 100 -------------~-----r~~-------~G------~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 100 -------------S-----RIA-------RG------ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp -------------E-----ETT-------EE------EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred -------------c-----ccc-------cC------CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 0 000 00 01235677777 5543 223 21 0123478999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
+++++..... ...|.++|+.++++..
T Consensus 149 k~lyVan~~~-----------~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 149 KTLLFYQFSP-----------APAVGVVDLEGKAFKR 174 (386)
T ss_dssp SEEEEEECSS-----------SCEEEEEETTTTEEEE
T ss_pred CEEEEEEcCC-----------CCeEEEEECCCCcEEE
Confidence 9998874211 2368899999876543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00014 Score=75.72 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=63.2
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe----eEEeccCCCCCCCCcccccccCCCCcceee
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (607)
..+..++|+|++..++++... ...|.+||+.++. ...+.. -...+..+.|+
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~------------dg~i~i~d~~~~~~~~~~~~~~~-------------~~~~v~~i~~~ 286 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVAD------------DQKLMIWDTRNNNTSKPSHTVDA-------------HTAEVNCLSFN 286 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCSCSSSCSEEEEC-------------CSSCEEEEEEC
T ss_pred CCEeeeEEeCCCCCEEEEEeC------------CCeEEEEECCCCCCCcceeEeec-------------CCCCeEEEEeC
Confidence 356789999965555555432 2378999998652 222211 01234569999
Q ss_pred cCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE-EEEEEeccccceEEEEE
Q 007338 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLV 329 (607)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~-l~~~~~~~~~~~~l~~~ 329 (607)
|+++..++-. . ....+.+++.. ..+.....+......+..+.|+|++.. |+... . .+ .|.++
T Consensus 287 p~~~~~l~tg-~-----------~dg~v~vwd~~-~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~-~-d~--~i~iw 349 (430)
T 2xyi_A 287 PYSEFILATG-S-----------ADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSG-T-DR--RLHVW 349 (430)
T ss_dssp SSCTTEEEEE-E-----------TTSEEEEEETT-CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE-T-TS--CCEEE
T ss_pred CCCCCEEEEE-e-----------CCCeEEEEeCC-CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe-C-CC--cEEEE
Confidence 9998533221 1 11345555541 111123344445566788999999864 44443 2 23 34445
Q ss_pred cCCC
Q 007338 330 CPGS 333 (607)
Q Consensus 330 dl~~ 333 (607)
|+..
T Consensus 350 d~~~ 353 (430)
T 2xyi_A 350 DLSK 353 (430)
T ss_dssp EGGG
T ss_pred eCCC
Confidence 5544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00023 Score=70.87 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=53.6
Q ss_pred eeEEEeccCCCCCCC----eeeeecCCCCCcccceEEccCCC-EEEEEeecCcccccCCCceeEEEEEC-CCCceeeccc
Q 007338 6 GIGIHRLLPDDSLGP----EKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFE 79 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~----~~~lt~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~-~~g~~~~lt~ 79 (607)
.|.|.++. +++ .+.+... ...+....|+|||+ .|+.... ...|.++|+ .+++...+..
T Consensus 34 ~v~iw~~~----~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 34 SLTVYKFD----IQAKNVDLLQSLRY--KHPLLCCNFIDNTDLQIYVGTV----------QGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEEEE----TTTTEEEEEEEEEC--SSCEEEEEEEESSSEEEEEEET----------TSCEEEECSSSSSSEEECBS
T ss_pred eEEEEEeC----CCCccccceeeeec--CCceEEEEECCCCCcEEEEEcC----------CCeEEEEEeccCCceEeccc
Confidence 46777776 444 4444432 33689999999999 7776542 357899999 9888877754
Q ss_pred --CCCccccccccceEEecCCeEEEEE
Q 007338 80 --SPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 80 --~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+.. .+..+.|+| +++++..
T Consensus 98 ~~~~~-----~v~~l~~~~-~~~l~s~ 118 (342)
T 1yfq_A 98 NEANL-----GICRICKYG-DDKLIAA 118 (342)
T ss_dssp CCCCS-----CEEEEEEET-TTEEEEE
T ss_pred cCCCC-----ceEEEEeCC-CCEEEEE
Confidence 333 267899999 7776664
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00057 Score=66.85 Aligned_cols=231 Identities=10% Similarity=-0.006 Sum_probs=125.3
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|+..+.. ++ .+.+.. +. .......++|||+.++ .. .+...|+++|+++|+.+.+........
T Consensus 51 ~i~~~~~~----~~-~~~~~~-~~-~~~~~l~~~~dg~l~v--~~--------~~~~~i~~~d~~~g~~~~~~~~~~~~~ 113 (296)
T 3e5z_A 51 RTWAWSDD----GQ-LSPEMH-PS-HHQNGHCLNKQGHLIA--CS--------HGLRRLERQREPGGEWESIADSFEGKK 113 (296)
T ss_dssp EEEEEETT----SC-EEEEES-SC-SSEEEEEECTTCCEEE--EE--------TTTTEEEEECSTTCCEEEEECEETTEE
T ss_pred EEEEEECC----CC-eEEEEC-CC-CCcceeeECCCCcEEE--Ee--------cCCCeEEEEcCCCCcEEEEeeccCCCC
Confidence 35555554 44 555542 22 2577889999998533 32 234679999998888776643211111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
...+..+.++|+|++++.....+... . ...... . .+ .....||.++..
T Consensus 114 ~~~~~~i~~d~~G~l~vtd~~~g~~~-------------------~---~~~~~~--~--~~------~~~~~l~~~~~~ 161 (296)
T 3e5z_A 114 LNSPNDVCLAPDGSLWFSDPTYGIDK-------------------P---EEGYGG--E--ME------LPGRWVFRLAPD 161 (296)
T ss_dssp CCCCCCEEECTTSCEEEEECSHHHHC-------------------G---GGSSCC--C--CC------SSSCEEEEECTT
T ss_pred CCCCCCEEECCCCCEEEECCcccccc-------------------c---cccccc--c--cc------CCCcEEEEECCC
Confidence 11134688999999877521000000 0 000000 0 00 013578888877
Q ss_pred CCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC-CCee---EEeccCCCCCCCCcccccc
Q 007338 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV---RELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~---~~l~~~~~~~~~~~~~~~~ 240 (607)
|+.+.+... .....+.|+|||+.+ ++... ...|++++++ .++. ..+... .
T Consensus 162 g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~--~---------- 216 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTG------------DNATHRYCLNARGETEYQGVHFTV--E---------- 216 (296)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEE-EEETT------------TTEEEEEEECSSSCEEEEEEEECC--S----------
T ss_pred CCEEEeecCCCCCccEEECCCCCEE-EEeCC------------CCeEEEEEECCCCcCcCCCeEeeC--C----------
Confidence 766555332 234678999999988 65432 2368888886 4544 222110 0
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeE-cCCCcEEEEEEec
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW-CDDSLALVNETWY 319 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~w-s~Dg~~l~~~~~~ 319 (607)
...+..+.++++|. +|+.. . ..+.+++. .|.....+..... ...++| +||++.|+....
T Consensus 217 ~~~p~~i~~d~~G~---l~v~~--~----------~~v~~~~~---~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~- 276 (296)
T 3e5z_A 217 PGKTDGLRVDAGGL---IWASA--G----------DGVHVLTP---DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS- 276 (296)
T ss_dssp SSCCCSEEEBTTSC---EEEEE--T----------TEEEEECT---TSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-
T ss_pred CCCCCeEEECCCCC---EEEEc--C----------CeEEEECC---CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-
Confidence 12245688999986 24433 1 23444442 2312222322223 677888 588876554432
Q ss_pred cccceEEEEEcCCCC
Q 007338 320 KTSQTRTWLVCPGSK 334 (607)
Q Consensus 320 ~~~~~~l~~~dl~~~ 334 (607)
..||.+++.++
T Consensus 277 ----~~l~~~~~~~~ 287 (296)
T 3e5z_A 277 ----TEFWSIETNVR 287 (296)
T ss_dssp ----TEEEEEECSCC
T ss_pred ----CeEEEEEcccc
Confidence 37999998873
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-06 Score=87.52 Aligned_cols=115 Identities=10% Similarity=0.157 Sum_probs=73.8
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCC-------CcCCCCCCchhHHHh
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-------NEFSGMTPTSSLIFL 552 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p-------~~~~~~~~~~~q~la 552 (607)
...|.+++++.||.+|+|+|++|++.. + +.|+||++|+...+ ...+.+.. ..|........+.||
T Consensus 85 ~~~e~v~~~~~~g~~l~~~l~~P~~~~--~--~~P~Vl~~HG~g~~----~~~~~~~~~~~~~~~~~y~~~~~~~a~~la 156 (391)
T 3g8y_A 85 YILEKWEFYPFPKSVSTFLVLKPEHLK--G--AVPGVLCIPGSGRT----KEGLVGEPGICDKLTEDYNNPKVSMALNMV 156 (391)
T ss_dssp EEEEEEEECCSTTCCEEEEEEEETTCC--S--CEEEEEEECCTTCC----HHHHTTCCCSSGGGCCCTTSTTTCHHHHHH
T ss_pred EEEEEEEEEcCCCCEEEEEEEeCCCCC--C--CCCEEEEeCCCCCC----chhhccccccccccchhhcchHHHHHHHHH
Confidence 467889999999999999999998752 3 44999999864111 00000100 001101113468999
Q ss_pred ccCeEEEeCCCCceec-cCCCC--------------------chhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 553 ARRFAVLAGPSIPIIG-EGLWS--------------------NWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 553 ~~GY~Vl~~~~~~~~g-~g~~~--------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++||+|+. ++.+..| ++... +..++...+.|++++++||.++..+|.+++
T Consensus 157 ~~G~~Vl~-~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI 227 (391)
T 3g8y_A 157 KEGYVAVA-VDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRI 227 (391)
T ss_dssp TTTCEEEE-CCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred HCCCEEEE-ecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeE
Confidence 99999998 6654333 12110 112233445899999999999999998875
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00052 Score=69.57 Aligned_cols=92 Identities=16% Similarity=0.055 Sum_probs=50.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc-
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC- 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~- 84 (607)
.+++.|+. +++.... ++.+... ...+||||++|+......+.....+....|.++|+++++...-.......
T Consensus 32 ~v~v~D~~----t~~~~~~--i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 32 RVHVYDYT----NGKFLGM--VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp EEEEEETT----TCCEEEE--EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred eEEEEECC----CCeEEEE--ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 34555554 5544322 3333344 88999999987665421000000012356999999988764322111100
Q ss_pred -ccccccceEEecCCeEEEEE
Q 007338 85 -LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 -~~~~~~~~~Wspd~~~l~~~ 104 (607)
.......+.++||++.+|.+
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~ 125 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQ 125 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEE
T ss_pred ccCCCcceEEECCCCCEEEEE
Confidence 00124578999999887775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00026 Score=70.64 Aligned_cols=137 Identities=13% Similarity=0.032 Sum_probs=83.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|+..+.. +++.+.+. ++. .+....|+|||+.++.. . ..|+++|+++|+.+.++.......
T Consensus 72 ~i~~~d~~----~~~~~~~~-~~~--~v~~i~~~~dg~l~v~~-~-----------~gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 72 ELHELHLA----SGRKTVHA-LPF--MGSALAKISDSKQLIAS-D-----------DGLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EEEEEETT----TTEEEEEE-CSS--CEEEEEEEETTEEEEEE-T-----------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred EEEEEECC----CCcEEEEE-CCC--cceEEEEeCCCeEEEEE-C-----------CCEEEEECCCCcEEEEeeCCCCCC
Confidence 46666654 55555444 332 57888999999865543 1 249999999998877753321110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
...+..+.++|++++++....... + .....||+++ +
T Consensus 133 ~~~~~~i~~d~~G~l~v~~~~~~~-------------------------------------~------~~~~~l~~~~-~ 168 (326)
T 2ghs_A 133 GNRSNDGRMHPSGALWIGTMGRKA-------------------------------------E------TGAGSIYHVA-K 168 (326)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTC-------------------------------------C------TTCEEEEEEE-T
T ss_pred CCCCCCEEECCCCCEEEEeCCCcC-------------------------------------C------CCceEEEEEe-C
Confidence 112447789999987665321000 0 0134677777 6
Q ss_pred CCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
|+.+.+... .....+.|||||+.|++.... ...|++++++
T Consensus 169 g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~------------~~~I~~~d~~ 209 (326)
T 2ghs_A 169 GKVTKLFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLD 209 (326)
T ss_dssp TEEEEEEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBC
T ss_pred CcEEEeeCCCcccCCeEEcCCCCEEEEEECC------------CCEEEEEEcc
Confidence 665554321 233578999999999887432 2368889875
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-06 Score=94.03 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=67.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCC----Cchh-HHHhccC
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT----PTSS-LIFLARR 555 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~----~~~~-q~la~~G 555 (607)
..|.+.+++.||.+|+++|++|.+. +++ |+||+.||- ..+. +....+.... .... ++||++|
T Consensus 36 ~~~~v~i~~~DG~~L~~~l~~P~~~---~~~--PvIl~~hpy--g~~~------~~~~~~~~~~~~~~~~~~~~~la~~G 102 (652)
T 2b9v_A 36 IKREVMVPMRDGVKLYTVIVIPKNA---RNA--PILLTRTPY--NAKG------RANRVPNALTMREVLPQGDDVFVEGG 102 (652)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTC---CSE--EEEEEEESS--CHHH------HTCSSTTCSSHHHHSCGGGHHHHHTT
T ss_pred EEEEEEEECCCCcEEEEEEEecCCC---CCc--cEEEEECCC--CCCc------ccccccccccccccccchHHHHHhCC
Confidence 5688999999999999999999874 334 999987641 1100 0000111000 1113 8999999
Q ss_pred eEEEeCCCCc-eeccCCCCchh------hH---HHHhhcHHHHHHHHHHh-ccccc
Q 007338 556 FAVLAGPSIP-IIGEGLWSNWF------QV---QRLLLKKLFDVEWLIQA-ELLLE 600 (607)
Q Consensus 556 Y~Vl~~~~~~-~~g~g~~~~~~------~~---~~~~~~~~~~v~~~~~~-~~~~~ 600 (607)
|+|+. .+.+ +.++++.+... |. ...+.|+.++|+||+++ +++|+
T Consensus 103 yaVv~-~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d~ 157 (652)
T 2b9v_A 103 YIRVF-QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNG 157 (652)
T ss_dssp CEEEE-EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEE
T ss_pred CEEEE-EecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCCC
Confidence 99998 3331 22233322111 22 26789999999999999 98885
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=73.51 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=41.8
Q ss_pred CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-CCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+.|||||++|+. ++. +...|++++++ +|+...+..............+.|+||++.++..
T Consensus 145 ~~~~~~~~spdG~~l~~-~~~--------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~ 210 (365)
T 1jof_A 145 TGIHGMVFDPTETYLYS-ADL--------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL 210 (365)
T ss_dssp CCEEEEEECTTSSEEEE-EET--------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred CcceEEEECCCCCEEEE-EcC--------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE
Confidence 35788999999998754 432 34689999998 7876544211100000114578999999877664
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00056 Score=67.03 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=37.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce---eecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~---~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
.+...+|||||++||..+. + ..|.++|+.++.. ..+..+.. .+..+.|+++ +++|+..
T Consensus 11 ~V~~~~~s~~g~~las~s~--------D--~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~ 73 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSS--------D--KTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASC 73 (297)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeC--------C--CEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEE
Confidence 5788999999999877653 2 4677778865422 33332222 2668899853 6776664
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0013 Score=65.91 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=74.8
Q ss_pred cccceEEcc--CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 32 KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
.+....|+| +|+.|+.... ...|.++|+.+++..++..... ...+..+.|+||+++++....
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~~~~~~~~---~~~i~~~~~~pdg~~lasg~~--- 190 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADN----------RGTIGFQSYEDDSQYIVHSAKS---DVEYSSGVLHKDSLLLALYSP--- 190 (343)
T ss_dssp CEEEEECCC---CCEEEEEET----------TCCEEEEESSSSCEEEEECCCS---SCCCCEEEECTTSCEEEEECT---
T ss_pred CEEEEEcCCCCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecCC---CCceEEEEECCCCCEEEEEcC---
Confidence 588999999 9998876553 2578888999988755432221 112568899999998776311
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-e-eecCC--CCceeeeeeCC
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-A-KDFGT--PAVYTAVEPSP 184 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~-~~lt~--~~~~~~~~~Sp 184 (607)
...|.++|+ +++ . ..+.. ...+..++|+|
T Consensus 191 ----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 191 ----------------------------------------------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp ----------------------------------------------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT
T ss_pred ----------------------------------------------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC
Confidence 123444555 443 2 34433 34667899999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
||++|+..+. . .|.+||+..+
T Consensus 225 ~g~~l~s~~~-------------~-~v~iwd~~~~ 245 (343)
T 3lrv_A 225 NGYWMVVECD-------------Q-TVVCFDLRKD 245 (343)
T ss_dssp TSSEEEEEES-------------S-BEEEEETTSS
T ss_pred CCCEEEEEeC-------------C-eEEEEEcCCC
Confidence 9999888762 1 6889998765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00041 Score=79.43 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=74.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|||||+.||.... ...|.+++..+++......... .+..+.|+| +++|+....
T Consensus 19 ~V~~lafspdg~~lAsgs~----------Dg~I~lw~~~~~~~~~~~~~~~-----~V~~l~fsp-g~~L~S~s~----- 77 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATV----------TGEVHIYGQQQVEVVIKLEDRS-----AIKEMRFVK-GIYLVVINA----- 77 (902)
T ss_dssp CEEEEEEETTTTEEEEEET----------TSEEEEECSTTCEEEEECSSCC-----CEEEEEEET-TTEEEEEET-----
T ss_pred CcEEEEECCCCCEEEEEeC----------CCEEEEEeCCCcEEEEEcCCCC-----CEEEEEEcC-CCEEEEEEC-----
Confidence 5889999999999887653 2578888988776543322211 267899999 665554311
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~i 189 (607)
...|.++|+ +++ ...+.....+..++|+||+++|
T Consensus 78 --------------------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 78 --------------------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWM 113 (902)
T ss_dssp --------------------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEE
T ss_pred --------------------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEE
Confidence 123344455 343 2233333456789999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
+....+ ..|.+||+++++..
T Consensus 114 ~sgs~d-------------g~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 114 LIGLQN-------------GSMIVYDIDRDQLS 133 (902)
T ss_dssp EEEETT-------------SCEEEEETTTTEEE
T ss_pred EEEcCC-------------CcEEEEECCCCccc
Confidence 877542 36899999988653
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.4e-06 Score=87.44 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=69.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCC-----------------cCCCC
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-----------------EFSGM 543 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~-----------------~~~~~ 543 (607)
..+.+.++++||.+|.++||+|.+ . + |.|+||..||- . .. .++. .+..+
T Consensus 40 ~~~~v~i~~~DG~~L~a~l~~P~~--~-~--~~P~vl~~~py--g--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (560)
T 3iii_A 40 MEKDGTVEMRDGEKLYINIFRPNK--D-G--KFPVVMSADTY--G--KD-----NKPKITNMGALWPTLGTIPTSSFTPE 105 (560)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSS--S-S--CEEEEEEEESS--C--TT-----CCCC--CHHHHSGGGCCCCCCTTCCT
T ss_pred EEEEEEEECCCCcEEEEEEEecCC--C-C--CCCEEEEecCC--C--CC-----cccccccccccccccccccccccccc
Confidence 567899999999999999999986 2 3 34999987641 1 10 0110 00000
Q ss_pred CCchhHHHhccCeEEEeCCCCceeccCCCC--chhhHHHHhhcHHHHHHHHHHhccccc
Q 007338 544 TPTSSLIFLARRFAVLAGPSIPIIGEGLWS--NWFQVQRLLLKKLFDVEWLIQAELLLE 600 (607)
Q Consensus 544 ~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 600 (607)
.....++||++||+|+. .+. +|.|... -..+......|+.++|+||.++.++|+
T Consensus 106 e~~~~~~la~~Gy~vv~-~D~--RG~G~S~G~~~~~~~~~~~D~~~~i~~l~~~~~~~~ 161 (560)
T 3iii_A 106 ESPDPGFWVPNDYVVVK-VAL--RGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSNG 161 (560)
T ss_dssp TSCCHHHHGGGTCEEEE-EEC--TTSTTCCSCBCTTSHHHHHHHHHHHHHHHTSTTEEE
T ss_pred cCCCHHHHHhCCCEEEE-EcC--CCCCCCCCccccCChhHHHHHHHHHHHHHhCCCCCC
Confidence 00125899999999998 443 3433321 123456789999999999999998874
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=98.07 E-value=5e-06 Score=90.87 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=67.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCC--CCchh-HHHhccCeE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSS-LIFLARRFA 557 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~--~~~~~-q~la~~GY~ 557 (607)
..+.+.+++.||.+|++++++|.+. +++ |+||+.||- . ... ...+.....+ ..... ++||++||+
T Consensus 24 ~~~~v~i~~~DG~~L~~~~~~P~~~---~~~--P~vl~~hgy--g--~~~---~~~~~~~~~~~~~~~~~~~~la~~Gy~ 91 (615)
T 1mpx_A 24 IKREVMIPMRDGVKLHTVIVLPKGA---KNA--PIVLTRTPY--D--ASG---RTERLASPHMKDLLSAGDDVFVEGGYI 91 (615)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTC---CSE--EEEEEEESS--C--HHH---HTCSSCCSSHHHHSCGGGHHHHHTTCE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCCC---CCe--eEEEEEcCC--C--Ccc---ccccccccccccccchhHHHHHhCCeE
Confidence 6688999999999999999999874 334 999987642 1 000 0001100000 01112 899999999
Q ss_pred EEeCCCCc-eeccCCCCchh------hHH---HHhhcHHHHHHHHHHh-ccccc
Q 007338 558 VLAGPSIP-IIGEGLWSNWF------QVQ---RLLLKKLFDVEWLIQA-ELLLE 600 (607)
Q Consensus 558 Vl~~~~~~-~~g~g~~~~~~------~~~---~~~~~~~~~v~~~~~~-~~~~~ 600 (607)
|+. ++.+ +.++++..... |.. ..+.|+.++|+||+++ ++.|+
T Consensus 92 Vv~-~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~~ 144 (615)
T 1mpx_A 92 RVF-QDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNG 144 (615)
T ss_dssp EEE-EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEE
T ss_pred EEE-ECCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCCC
Confidence 998 4332 11233321111 232 6789999999999999 88775
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0019 Score=65.67 Aligned_cols=140 Identities=12% Similarity=0.150 Sum_probs=76.4
Q ss_pred ceEEEEeC--CCC-eeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCC
Q 007338 157 AQLVLGSL--DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (607)
Q Consensus 157 ~~l~~~~~--~g~-~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (607)
..+.++|+ .++ ...+.. ...+..++|+|||++|+..+.+ ..+.+||+.+++............
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-------------~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD-------------GTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS-------------SCEEEEETTTTEEEEEECCCCSSS
T ss_pred CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC-------------CeEEEEECCCCcEEEEeccccccc
Confidence 45666676 233 333432 3356789999999988766532 368999998876554322110000
Q ss_pred CCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee----eecCcccceeeEcC
Q 007338 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL----HKLDLRFRSVSWCD 308 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l----~~~~~~~~~~~ws~ 308 (607)
......+..+.|||+|+. +.... ....+.+++. ..+.....+ ......+..++|+|
T Consensus 295 -----~~~~~~v~~~~~s~~g~~--l~~g~-----------~dg~i~vwd~--~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 295 -----DNELPIVTSVAFSISGRL--LFAGY-----------SNGDCYVWDT--LLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp -----CCSSCSCSEEEECSSSSE--EEEEC-----------TTSCEEEEET--TTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred -----ccccCceEEEEECCCCCE--EEEEE-----------CCCCEEEEEC--CCCceEEEEecccCCCCCceEEEEECC
Confidence 000012346899999983 12211 1124555553 222111222 12345678899999
Q ss_pred CCcEEEEEEeccccceEEEEEcCCC
Q 007338 309 DSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
||..|+.... ++.-+|| ++.+
T Consensus 355 dg~~l~sgs~--D~~i~iW--~~~~ 375 (380)
T 3iz6_a 355 DGSALCTGSW--DKNLKIW--AFSG 375 (380)
T ss_dssp SSSEEEEECT--TSCEEEE--ECCS
T ss_pred CCCEEEEeeC--CCCEEEE--ecCC
Confidence 9998877542 3334555 5555
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.001 Score=68.52 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=70.1
Q ss_pred cCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCC
Q 007338 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (607)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~ 119 (607)
||++++ |+.+.... .....|.++|+++++...-..... .. .+.+|||++.+|.+...
T Consensus 82 ~~~~~v-yV~n~~~~----~~~~~VsVID~~t~~vv~~I~vG~-----~P-gia~SpDgk~lyVan~~------------ 138 (426)
T 3c75_H 82 PDARRV-YIQDPAHF----AAITQQFVIDGSTGRILGMTDGGF-----LP-HPVAAEDGSFFAQASTV------------ 138 (426)
T ss_dssp CCTTEE-EEEECTTT----CSSEEEEEEETTTTEEEEEEEECS-----SC-EEEECTTSSCEEEEEEE------------
T ss_pred CCCCEE-EEECCCcC----CCCCeEEEEECCCCEEEEEEECCC-----CC-ceEECCCCCEEEEEecc------------
Confidence 789875 55543100 011799999999998653322222 14 78999998876664100
Q ss_pred CCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCCC--------CceeeeeeCCCCceE
Q 007338 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP--------AVYTAVEPSPDQKYV 189 (607)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~--------~~~~~~~~SpDg~~i 189 (607)
..+.. .+ .....|.++|. ++++. .+.-+ ..-..+.+||||+++
T Consensus 139 --------------~~~~~-------~G------~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 139 --------------FERIA-------RG------KRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNL 191 (426)
T ss_dssp --------------EEETT-------EE------EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEE
T ss_pred --------------ccccc-------cC------CCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEE
Confidence 00000 00 01246777787 55432 33211 122478999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
++..... ...|.++|+.++++.
T Consensus 192 yV~n~~~-----------~~~VsVID~~t~kvv 213 (426)
T 3c75_H 192 LFYQFSP-----------APAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEECSS-----------SCEEEEEETTTTEEE
T ss_pred EEEecCC-----------CCeEEEEECCCCeEE
Confidence 9885321 236889999887654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0037 Score=63.17 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=33.9
Q ss_pred cCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
||+++ +|+.+.... ......|+++|+++++......... .. .+.++||++.+|.+
T Consensus 13 ~~~~~-~yv~~~~~~---~~~d~~v~v~D~~t~~~~~~i~~g~-----~p-~i~~spdg~~lyv~ 67 (361)
T 2oiz_A 13 PQENR-IYVMDSVFM---HLTESRVHVYDYTNGKFLGMVPTAF-----NG-HVQVSNDGKKIYTM 67 (361)
T ss_dssp CGGGE-EEEEECCGG---GGGGCEEEEEETTTCCEEEEEECCE-----EE-EEEECTTSSEEEEE
T ss_pred CCCCE-EEEECCCCC---ccccCeEEEEECCCCeEEEEecCCC-----CC-ceEECCCCCEEEEE
Confidence 57877 565543110 0123589999999998653322211 13 78999999887775
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0021 Score=62.76 Aligned_cols=254 Identities=9% Similarity=0.063 Sum_probs=126.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....| |||+.|+.... ...|.++|+.+++.......... .+..+.|+|++++++....++.-.
T Consensus 20 ~v~~~~~-~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR----------DGTVRLWSKDDQWLGTVVYTGQG----FLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CEEEEEE-EETTEEEEEET----------TSEEEEEEESSSEEEEEEEECSS----CEEEEEEETTTTEEEEEETTSCEE
T ss_pred CcEEEEe-cCCCEEEEEEc----------CCcEEEEECCCCEEEEEeecCCc----cEEEEEECCCCCEEEEecCCCeEE
Confidence 5888999 99999876543 35788889988875544322222 267899999988777654322100
Q ss_pred CCCCccCCCCC-eeeecCCccccccccccccccCcccccc-eeeeccceEEEEeCCC-CeeecCC-CCceeeeeeCC-CC
Q 007338 112 PPKKTMVPLGP-KIQSNEQKNIIISRMTDNLLKDEYDESL-FDYYTTAQLVLGSLDG-TAKDFGT-PAVYTAVEPSP-DQ 186 (607)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g-~~~~lt~-~~~~~~~~~Sp-Dg 186 (607)
.-......... ..... +.. ..+.. +. .+... ........+.+++ .+ ....+.. ...+..+.|+| ++
T Consensus 85 ~~~~~~~~~~~~~~~~~--~~~---~~i~~-~~--~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLI--GHQ---GNVCS-LS--FQDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp EEETTCCTTSCC-CEEC--CCS---SCEEE-EE--EETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred EEEeeecCCCCcccchh--hcc---cCEEE-EE--ecCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCC
Confidence 00000000000 00000 000 00000 00 01111 1111234555566 33 2223322 23456778887 88
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
+.++....+ ..+.+||.. .....+... .......+.|+|++. ++ . ..
T Consensus 156 ~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~~------------~~~~i~~~~~~~~~~--~~-~-~~--- 202 (313)
T 3odt_A 156 NKFLTASAD-------------KTIKLWQND-KVIKTFSGI------------HNDVVRHLAVVDDGH--FI-S-CS--- 202 (313)
T ss_dssp TEEEEEETT-------------SCEEEEETT-EEEEEECSS------------CSSCEEEEEEEETTE--EE-E-EE---
T ss_pred CEEEEEECC-------------CCEEEEecC-ceEEEEecc------------CcccEEEEEEcCCCe--EE-E-cc---
Confidence 888776532 368888832 222222210 011233589999987 22 1 11
Q ss_pred CCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee---
Q 007338 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--- 343 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--- 343 (607)
....+.+++. ..+.....+......+..+.|+|++. ++.... + ..|.++|+.++ +....+.
T Consensus 203 -------~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~--d--g~v~iwd~~~~--~~~~~~~~~~ 266 (313)
T 3odt_A 203 -------NDGLIKLVDM--HTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGE--D--RTVRIWSKENG--SLKQVITLPA 266 (313)
T ss_dssp -------TTSEEEEEET--TTCCEEEEEECCSSCEEEEEECTTSC-EEEEET--T--SEEEEECTTTC--CEEEEEECSS
T ss_pred -------CCCeEEEEEC--CchhhhhhhhcCCceEEEEEEecCCC-EEEEec--C--CEEEEEECCCC--ceeEEEeccC
Confidence 1134555554 22312233434455678899999995 444321 2 36777888773 3222221
Q ss_pred ccccccccCCCCCCeeeCCCCCEE
Q 007338 344 RVFENVYSDPGSPMMTRTSTGTNV 367 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~~ 367 (607)
..+.. +.|+|+|+.+
T Consensus 267 ~~i~~---------~~~~~~~~~~ 281 (313)
T 3odt_A 267 ISIWS---------VDCMSNGDII 281 (313)
T ss_dssp SCEEE---------EEECTTSCEE
T ss_pred ceEEE---------EEEccCCCEE
Confidence 11222 7899999843
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0034 Score=61.44 Aligned_cols=250 Identities=12% Similarity=0.087 Sum_probs=128.7
Q ss_pred eEEEeccCCCCCCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
|.|-|+. +|+..++..+.. ...+....|+|||++||..+. ...|.++++++++..+......
T Consensus 47 V~iWd~~----tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~----------Dg~v~iw~~~~~~~~~~~~~h~--- 109 (318)
T 4ggc_A 47 VYLWSAS----SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS----------SAEVQLWDVQQQKRLRNMTSHS--- 109 (318)
T ss_dssp EEEEETT----TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCS---
T ss_pred EEEEECC----CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC----------CCcEEEeecCCceeEEEecCcc---
Confidence 5666776 676665543332 225889999999999876543 2578888999987644322211
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
.....+++++++++..... ..+...+.
T Consensus 110 ---~~~~~~~~~~~~l~s~~~~-------------------------------------------------~~~~~~~~~ 137 (318)
T 4ggc_A 110 ---ARVGSLSWNSYILSSGSRS-------------------------------------------------GHIHHHDVR 137 (318)
T ss_dssp ---SCEEEEEEETTEEEEEETT-------------------------------------------------SEEEEEETT
T ss_pred ---ceEEEeecCCCEEEEEecC-------------------------------------------------CceEeeecC
Confidence 1223455556665543210 01111111
Q ss_pred CC-C-eeec-CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 165 DG-T-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 165 ~g-~-~~~l-t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
.+ . ...+ ..........+++++++|+....+ ..+.+||+.+++...... .......
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~--------~~~~~~~ 196 (318)
T 4ggc_A 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPL--------QTFTQHQ 196 (318)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCBTTBSCCS--------EEECCCC
T ss_pred CCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------cceeEEECCCCcccccce--------eeecccC
Confidence 11 1 1111 122345678899999988766532 368889987653211000 0000001
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
..+..+.|+|++...+..... .. ...+.+++. ..+ ................|++++..++......+
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~--~~--------~~~i~lwd~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGG--TS--------DRHIRIWNV--CSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEEC--TT--------TCEEEEEET--TTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred CceEEEEecCCCCcEEEEEec--CC--------CCEEEEEec--ccc-cccccccceeeeeeeeecccccceEEEEEcCC
Confidence 112347788887754433221 11 123444442 111 22222233345667889999887665443222
Q ss_pred cceEEEEEcCCCCCCCceEeee--ccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+ .|.+.|+.+++ ....+.. ..+.. +.|+|||+.|+-..
T Consensus 264 ~--~i~iwd~~~~~-~~~~l~gH~~~V~~---------l~~spdg~~l~S~s 303 (318)
T 4ggc_A 264 N--QLVIWKYPTMA-KVAELKGHTSRVLS---------LTMSPDGATVASAA 303 (318)
T ss_dssp C--CEEEEETTTCC-EEEEECCCSSCEEE---------EEECTTSSCEEEEE
T ss_pred C--EEEEEECCCCc-EEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 3 56667887731 1222221 12333 78999999766443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0024 Score=63.42 Aligned_cols=239 Identities=12% Similarity=0.073 Sum_probs=124.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|++.++. +++.+.+.. .....+....|+|||+.++...... .....|+++|+++++.+.+..... .
T Consensus 67 ~i~~~d~~----~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~--~ 133 (333)
T 2dg1_A 67 NIFKINPE----TKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDF------KSTGGIFAATENGDNLQDIIEDLS--T 133 (333)
T ss_dssp EEEEECTT----TCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTS------SSCCEEEEECTTSCSCEEEECSSS--S
T ss_pred EEEEEeCC----CCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCC------CCCceEEEEeCCCCEEEEEEccCc--c
Confidence 35555554 666666642 1223578899999997544332110 123589999999988764422111 0
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
...+..+.++|++++++..... . . . .....||+++..
T Consensus 134 ~~~~~~i~~d~~g~l~v~~~~~-----------------------~-------~------~-------~~~~~l~~~~~~ 170 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTDFRG-----------------------Y-------S------T-------NPLGGVYYVSPD 170 (333)
T ss_dssp CCCEEEEEECTTSCEEEEECCC-----------------------B-------T------T-------BCCEEEEEECTT
T ss_pred CCcccceEECCCCCEEEEeccc-----------------------c-------c------c-------CCCceEEEEeCC
Confidence 1124577899999887753110 0 0 0 013467888874
Q ss_pred -CCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC--CCeeEEeccCCCCCCCCccccccc
Q 007338 166 -GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 166 -g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
++.+.+... .....+.|+|||++|++.... ...|++++++ +.....+... ....+.. .
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~------------~~~i~~~d~~~~g~~~~~~~~~-----~~~~~~~-~ 232 (333)
T 2dg1_A 171 FRTVTPIIQNISVANGIALSTDEKVLWVTETT------------ANRLHRIALEDDGVTIQPFGAT-----IPYYFTG-H 232 (333)
T ss_dssp SCCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECTTSSSEEEEEEE-----EEEECCS-S
T ss_pred CCEEEEeecCCCcccceEECCCCCEEEEEeCC------------CCeEEEEEecCCCcCcccccce-----EEEecCC-C
Confidence 455554321 234578999999988887532 1368888885 3333222100 0000000 0
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc------ccceeeEcCCCcEEE-
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL------RFRSVSWCDDSLALV- 314 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~------~~~~~~ws~Dg~~l~- 314 (607)
..+..+.++++|. +|+..... ..+++++. +|.....+..... ....++|+||+..|+
T Consensus 233 ~~~~~i~~d~~G~---l~v~~~~~----------~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 233 EGPDSCCIDSDDN---LYVAMYGQ----------GRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp SEEEEEEEBTTCC---EEEEEETT----------TEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCCCceEECCCCC---EEEEEcCC----------CEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 1123477888876 24432211 23444442 2212222221111 356789999986544
Q ss_pred EEEecc-ccceEEEEEcCCCC
Q 007338 315 NETWYK-TSQTRTWLVCPGSK 334 (607)
Q Consensus 315 ~~~~~~-~~~~~l~~~dl~~~ 334 (607)
...... .....||.+++...
T Consensus 297 ~~~~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 297 CSNDIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp EEECGGGTCCEEEEEEECSSC
T ss_pred EeCccCCCCCceEEEEecccC
Confidence 332211 23457888887653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.005 Score=63.45 Aligned_cols=59 Identities=20% Similarity=0.443 Sum_probs=41.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+.+-..||+++ .||... ...|++||+.+|+..++..... ....+..+.|+||+++++..
T Consensus 107 y~~~l~wS~~n-~lAvgl-----------d~tV~lWd~~tg~~~~~~~~~~--~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-----------DNSVYLWSASSGDILQLLQMEQ--PGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-----------TTEEEEEETTTCCEEEEEECCS--TTCCEEEEEECTTSSEEEEE
T ss_pred cceeEEECCCC-EEEEEe-----------CCEEEEEECCCCCEEEEEEecC--CCCcEEEEEECCCCCEEEEE
Confidence 45668999864 666543 2579999999998876643322 11236789999999987764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00083 Score=72.80 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=121.2
Q ss_pred eeEEEeccCCCCCC-----CeeeeecCCCCCc-ccceEEcc--CCCEEEEEeecCcccccCCCceeEEEEECCCC-----
Q 007338 6 GIGIHRLLPDDSLG-----PEKEVHGYPDGAK-INFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----- 72 (607)
Q Consensus 6 ~~~~~~~~~~~~~g-----~~~~lt~~~~~~~-~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----- 72 (607)
.|.|.++. ++ ....+... ... +....||| ||++||.... ...|.++|+.++
T Consensus 40 ~v~v~~~~----~~~~~~~~~~~~~~h--~~~~v~~~~~sp~~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 40 SAFVRCLD----DGDSKVPPVVQFTGH--GSSVVTTVKFSPIKGSQYLCSGDE----------SGKVIVWGWTFDKESNS 103 (615)
T ss_dssp EEEEEECC----SSCCSSCSEEEECTT--TTSCEEEEEECSSTTCCEEEEEET----------TSEEEEEEEEEEGGGTE
T ss_pred eEEEEECC----CCCCccccceEEecC--CCceEEEEEECcCCCCCEEEEecC----------CCEEEEEeCCCCccccc
Confidence 57778876 33 44444432 225 88999999 9999887653 246777788655
Q ss_pred -ceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccce
Q 007338 73 -EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (607)
Q Consensus 73 -~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 151 (607)
+.+.+..... ....+..+.|+|++++++.......
T Consensus 104 ~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~------------------------------------------ 139 (615)
T 1pgu_A 104 VEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGRD------------------------------------------ 139 (615)
T ss_dssp EEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCSS------------------------------------------
T ss_pred ccccccchhhc--ccccEEEEEEeCCCCEEEEeccCCC------------------------------------------
Confidence 2222211110 0112668999999887776421100
Q ss_pred eeeccceEEEEeCCCCeeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCC
Q 007338 152 DYYTTAQLVLGSLDGTAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (607)
Q Consensus 152 ~~~~~~~l~~~~~~g~~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (607)
....|++++.......+.. ...+..+.|+|++++++++... ...+.+||+.+++.......
T Consensus 140 ---~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------d~~v~vwd~~~~~~~~~~~~--- 201 (615)
T 1pgu_A 140 ---NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRT--- 201 (615)
T ss_dssp ---CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET------------TTEEEEEETTTBEEEEEECS---
T ss_pred ---CccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeC------------CCcEEEEeCCCcceeeeecc---
Confidence 0123334442122333332 2356789999999865555432 23788999987654432210
Q ss_pred CCCCcccccccC---CCCcceeecC-CCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee-e---ecCcccc
Q 007338 231 EDIPVCYNSVRE---GMRSISWRAD-KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-H---KLDLRFR 302 (607)
Q Consensus 231 ~~~~~~~~~~~~---~~~~~~wspd-g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l-~---~~~~~~~ 302 (607)
-.. .+..+.|+|+ ++. ++.. . ....+.+++. ..+.....+ . .....+.
T Consensus 202 ---------~~~~~~~v~~~~~~~~~~~~-l~~~-~-----------~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 202 ---------HHKQGSFVRDVEFSPDSGEF-VITV-G-----------SDRKISCFDG--KSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp ---------SSCTTCCEEEEEECSTTCCE-EEEE-E-----------TTCCEEEEET--TTCCEEEECCBTTBCCCSCEE
T ss_pred ---------cCCCCceEEEEEECCCCCCE-EEEE-e-----------CCCeEEEEEC--CCCCEeEEecccccccCCceE
Confidence 011 2346899999 873 2211 1 1124555553 233122223 2 3345577
Q ss_pred eeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 303 SVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 303 ~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
.+.|+ ++..|+.... + ..|.++|+.+
T Consensus 258 ~~~~~-~~~~l~~~~~--d--~~i~~wd~~~ 283 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGA--D--ATIRVWDVTT 283 (615)
T ss_dssp EEEES-SSSEEEEEET--T--SEEEEEETTT
T ss_pred EEEEc-CCCEEEEEcC--C--CcEEEEECCC
Confidence 89999 8887766542 1 2566667765
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=97.97 E-value=6e-06 Score=84.89 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=86.6
Q ss_pred EEEEeecccccceEEEEecCCC--ceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEE
Q 007338 441 ILTSKESKTEITQYHILSWPLK--KSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW 518 (607)
Q Consensus 441 ~v~~~ss~~~p~~l~~~~~~~~--~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~ 518 (607)
+++..++..+|.++|..+.... ..+.++..+. ..+......+.+.+++ ||.+|+|++++|++. + +.|+||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~-dg~~i~~~l~~p~~~---~--~~P~vl~ 157 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDERRQKGQARKVELYQK-AAPLLSPPAERHELVV-DGIPMPVYVRIPEGP---G--PHPAVIM 157 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSTHHHHHHHHHHHHHHH-HGGGSSSCEEEEEEEE-TTEEEEEEEECCSSS---C--CEEEEEE
T ss_pred HHHHHHHhhceeeeeccCCCCCHHHHHHHHHHHH-HHhhcCCCeEEEEEEe-CCEEEEEEEEcCCCC---C--CCCEEEE
Confidence 5566777788888888653211 1123443322 1222224788999988 999999999999874 2 3399998
Q ss_pred eccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHHhcc
Q 007338 519 AYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 519 ~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 597 (607)
.|+. ++... ..+...+.|+++||+|+. ++.+ |.|.. ..........+++.+++++|.+++.
T Consensus 158 ~hG~------------~~~~~---~~~~~~~~l~~~G~~v~~-~d~r--G~G~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (386)
T 2jbw_A 158 LGGL------------ESTKE---ESFQMENLVLDRGMATAT-FDGP--GQGEMFEYKRIAGDYEKYTSAVVDLLTKLEA 219 (386)
T ss_dssp ECCS------------SCCTT---TTHHHHHHHHHTTCEEEE-ECCT--TSGGGTTTCCSCSCHHHHHHHHHHHHHHCTT
T ss_pred eCCC------------CccHH---HHHHHHHHHHhCCCEEEE-ECCC--CCCCCCCCCCCCccHHHHHHHHHHHHHhCCC
Confidence 7642 11111 111226899999999998 5543 33332 1111223335678999999999998
Q ss_pred cccccc
Q 007338 598 LLEDTL 603 (607)
Q Consensus 598 ~~~~~~ 603 (607)
+|.+++
T Consensus 220 ~~~~~i 225 (386)
T 2jbw_A 220 IRNDAI 225 (386)
T ss_dssp EEEEEE
T ss_pred cCcccE
Confidence 888765
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=81.38 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=71.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+++++.||.++.++++.|.+ .+.+ +.|+||++|+.. +....+. ....+.|+++||.|+.
T Consensus 67 ~~~~~~~~~~~g~~~~~~~~~p~~-~~~~--~~p~vv~~hG~~-----------~~~~~~~---~~~~~~l~~~G~~v~~ 129 (367)
T 2hdw_A 67 EHRKVTFANRYGITLAADLYLPKN-RGGD--RLPAIVIGGPFG-----------AVKEQSS---GLYAQTMAERGFVTLA 129 (367)
T ss_dssp EEEEEEEECTTSCEEEEEEEEESS-CCSS--CEEEEEEECCTT-----------CCTTSHH---HHHHHHHHHTTCEEEE
T ss_pred eeEEEEEecCCCCEEEEEEEeCCC-CCCC--CCCEEEEECCCC-----------CcchhhH---HHHHHHHHHCCCEEEE
Confidence 678999999999999999999987 4333 349999988531 1111110 0135789999999998
Q ss_pred CCCCceec-cCCCC-chhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIG-EGLWS-NWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g-~g~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.+..| +.+.+ ..........|+.++++||.++..+|.+++
T Consensus 130 -~d~~g~g~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~ 173 (367)
T 2hdw_A 130 -FDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERI 173 (367)
T ss_dssp -ECCTTSTTSCCSSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred -ECCCCcCCCCCcCccccchhhHHHHHHHHHHHHHhCcCCCcCcE
Confidence 5543322 11111 112246778999999999999988777654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.002 Score=64.86 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=34.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...+|||||+.||.... . .+.++++.+++......... +....|++++..++.+
T Consensus 21 ~V~~v~fs~dg~~la~g~~---------~--~~~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTL---------K--SFEIYNVHPVAHIMSQEMRH------LSKVRMLHRTNYVAFV 76 (355)
T ss_dssp CCCEEEECTTSSEEEEECS---------S--EEEEEEETTEEEEEEEECSC------CCEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCEEEEEcC---------C--EEEEEecCCcceeeeeecCC------eEEEEEcCCCCEEEEE
Confidence 6889999999998876542 2 24577877765433221111 4556777776655443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.003 Score=65.04 Aligned_cols=267 Identities=11% Similarity=-0.013 Sum_probs=122.8
Q ss_pred cccceEEccCCCEEEEEeecCcc--cccCCCceeEEEEECCCCceeecccCC-Cccc--cccccceEEecCCeEEEEEec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEE--DNVSSCKLRVWIADAETGEAKPLFESP-DICL--NAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~--~~~~~~~~~L~v~d~~~g~~~~lt~~~-~~~~--~~~~~~~~Wspd~~~l~~~~~ 106 (607)
.. ...+||||++|+........ .+ +....|.++|+++++...-.... .... ......+.++||++.+|.+..
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G--~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~ 196 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARG--KRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF 196 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEE--EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred CC-ceEECCCCCEEEEEeccccccccC--CCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec
Confidence 45 89999999997665421000 00 12468999999998864322112 0000 011457899999887776521
Q ss_pred CCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccc-eeeeccceEEEEeC-CCCeee-----cCC--CCce
Q 007338 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL-FDYYTTAQLVLGSL-DGTAKD-----FGT--PAVY 177 (607)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~g~~~~-----lt~--~~~~ 177 (607)
......... +......+....-+. ... ..+.+... ........+..+++ +++... +.. ....
T Consensus 197 ~~~~~VsVI-D~~t~kvv~~I~v~g------~~~--~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~ 267 (426)
T 3c75_H 197 SPAPAVGVV-DLEGKTFDRMLDVPD------CYH--IFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLI 267 (426)
T ss_dssp SSSCEEEEE-ETTTTEEEEEEECCS------EEE--EEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBC
T ss_pred CCCCeEEEE-ECCCCeEEEEEEcCC------cee--eccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCcee
Confidence 100000000 000111100000000 000 00000011 11112345555666 443321 111 1122
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCC--CCCCcccccccCCCCcceeecCCCc
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA--EDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
..+.+++|++.+++.+. ...++++|..++....+...... ..+..+ ....+...+.++||++.
T Consensus 268 ~~~~~~~dg~~~~~~s~-------------~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g--~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 268 NHPAFSLRSGRLVWPTY-------------TGKIFQADLTAEGATFRAPIEALTEAERADD--WRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp SCCEECTTTCEEEEEBT-------------TSEEEEEEECSSCEEECCCEESSCTTTGGGT--EEECSSSCEEEEGGGTE
T ss_pred eEeeecCCCCEEEEEeC-------------CCcEEEEeccCCceEEeeeeeeccccccccc--cccCCceeeEEcCCCCE
Confidence 34577999999998853 13689999987766554321110 000000 00112234788898884
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCc-EEEEEEeccccceEEEEEcCCCC
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~-~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
. |+......... .-...+.+.++|. .+......+ ........+.|+|||+ .++.. +.. ...|.++|+++.
T Consensus 333 l--yVa~~~~~~gt-hk~~s~~VsVID~--~T~kvv~~I-~vg~~P~gia~spDg~~~lyv~-n~~--s~~VsVID~~t~ 403 (426)
T 3c75_H 333 I--YLLVDQRDEWK-HKAASRFVVVLNA--ETGERINKI-ELGHEIDSINVSQDAEPLLYAL-SAG--TQTLHIYDAATG 403 (426)
T ss_dssp E--EEEEEECCTTC-TTSCEEEEEEEET--TTCCEEEEE-EEEEEECEEEECCSSSCEEEEE-ETT--TTEEEEEETTTC
T ss_pred E--EEEeccccccc-ccCCCCEEEEEEC--CCCeEEEEE-ECCCCcCeEEEccCCCEEEEEE-cCC--CCeEEEEECCCC
Confidence 3 33221111000 0001235777774 332111222 2233466789999998 44433 322 247999999884
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00093 Score=66.91 Aligned_cols=83 Identities=12% Similarity=0.004 Sum_probs=51.8
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
|.+.++. +++...... .....+....|+| |++.|+.... ...|.++|+.+++......... ..
T Consensus 97 i~v~d~~----~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~-~~ 160 (366)
T 3k26_A 97 IRIINPI----TMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSK----------DHALRLWNIQTDTLVAIFGGVE-GH 160 (366)
T ss_dssp EEEECTT----TCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEET----------TSCEEEEETTTTEEEEEECSTT-SC
T ss_pred EEEEEch----hceEeeeec-CCCCcEEEEEECCCCCCEEEEEeC----------CCeEEEEEeecCeEEEEecccc-cc
Confidence 6666765 444433322 1233689999999 8887766543 3578889999887654431000 01
Q ss_pred cccccceEEecCCeEEEEEe
Q 007338 86 NAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~ 105 (607)
...+..+.|+|++++++...
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec
Confidence 12266899999988777653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0042 Score=62.02 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=53.1
Q ss_pred eeEEEeccCCCCCCCe--eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPE--KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~--~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.|.|.++. ..+.. +.+.. ....+....|+|||++|+.... ...|.++|+.+++...+..+..
T Consensus 65 ~i~iw~~~---~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~- 128 (368)
T 3mmy_A 65 DVRCWEVQ---DSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASC----------DKTAKMWDLSSNQAIQIAQHDA- 128 (368)
T ss_dssp EEEEEEEC---TTSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECSS-
T ss_pred cEEEEEcC---CCCceeEEEecc--ccCCEEEEEECcCCCEEEEEcC----------CCcEEEEEcCCCCceeeccccC-
Confidence 36677775 12444 23332 2336899999999999886542 3588889999998776654333
Q ss_pred cccccccceEE--ecCCeEEEEE
Q 007338 84 CLNAVFGSFVW--VNNSTLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~W--spd~~~l~~~ 104 (607)
.+..+.| ++++++++..
T Consensus 129 ----~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 129 ----PVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp ----CEEEEEEEECSSCEEEEEE
T ss_pred ----ceEEEEEEeCCCCCEEEEc
Confidence 2678899 7788877764
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=97.88 E-value=3e-05 Score=78.19 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=70.8
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
...+.++|++.||.+|+++++.|++ . + +.|+||++|+. ++.. ..+.....++++||+|+
T Consensus 80 ~~~~~~~~~~~~g~~l~~~~~~P~~-~--~--~~p~vv~~HG~------------g~~~----~~~~~~~~~~~~G~~v~ 138 (346)
T 3fcy_A 80 AECYDLYFTGVRGARIHAKYIKPKT-E--G--KHPALIRFHGY------------SSNS----GDWNDKLNYVAAGFTVV 138 (346)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEESC-S--S--CEEEEEEECCT------------TCCS----CCSGGGHHHHTTTCEEE
T ss_pred eEEEEEEEEcCCCCEEEEEEEecCC-C--C--CcCEEEEECCC------------CCCC----CChhhhhHHHhCCcEEE
Confidence 4788999999999999999999987 2 2 34999998853 1111 11223457889999999
Q ss_pred eCCCCceec-cCC--------------------CCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 560 AGPSIPIIG-EGL--------------------WSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g-~g~--------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. ++.+..| +.. .+...+..+++.|+.++++||.....+|.+++
T Consensus 139 ~-~D~rG~g~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i 202 (346)
T 3fcy_A 139 A-MDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRV 202 (346)
T ss_dssp E-ECCTTSSSSCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred E-EcCCCCCCCCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcE
Confidence 8 5543222 111 11222345778999999999999888887765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0015 Score=64.32 Aligned_cols=150 Identities=11% Similarity=0.017 Sum_probs=80.8
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
+|+.+.+.. +. .......++|||+.++. . .+...|++++.+ |+.+.+...........+..+.++++
T Consensus 75 ~g~~~~~~~-~~-~~~~gl~~d~dG~l~v~--~--------~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d 141 (305)
T 3dr2_A 75 DGTVDVLLD-AT-AFTNGNAVDAQQRLVHC--E--------HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD 141 (305)
T ss_dssp TSCEEEEEE-SC-SCEEEEEECTTSCEEEE--E--------TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT
T ss_pred CCCEEEEeC-CC-CccceeeECCCCCEEEE--E--------CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC
Confidence 344555542 22 25678899999984433 2 233579999987 66666643221111112346889999
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCCc
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV 176 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~~ 176 (607)
++++|.-...+... ...+. .. ..+ .....||+++. +|+.+.+.....
T Consensus 142 G~l~~td~~~g~~~---------------~~~~~-------~~-----~~~-----~~~~~v~~~d~~~g~~~~~~~~~~ 189 (305)
T 3dr2_A 142 GAIWFTDPPFGLRK---------------PSQGC-------PA-----DPE-----LAHHSVYRLPPDGSPLQRMADLDH 189 (305)
T ss_dssp SCEEEECCSGGGSC---------------GGGSC-------CC-----CCS-----SSCEEEEEECSSSCCCEEEEEESS
T ss_pred CCEEEeCcCCCccc---------------ccccc-------cc-----ccc-----cCCCeEEEEcCCCCcEEEEecCCC
Confidence 99877410000000 00000 00 000 02357999998 677666551123
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
...++|||||+.|+++....... ....|++++++++
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~-------~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGH-------GSVEITAFAWRDG 225 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC----------CCCEEEEEEEETT
T ss_pred CcceEEcCCCCEEEEEecCCcCC-------CCCEEEEEEecCC
Confidence 35789999999988875321000 0136888887654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0066 Score=60.37 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=114.3
Q ss_pred cCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccC
Q 007338 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (607)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~ 118 (607)
.++++|+.... ....|.++|+++++. .++.... ....+.+++++++++....
T Consensus 51 ~~~~~lyv~~~---------~~~~v~viD~~t~~~~~~i~~~~------~p~~i~~~~~g~lyv~~~~------------ 103 (328)
T 3dsm_A 51 IRDGIGWIVVN---------NSHVIFAIDINTFKEVGRITGFT------SPRYIHFLSDEKAYVTQIW------------ 103 (328)
T ss_dssp EETTEEEEEEG---------GGTEEEEEETTTCCEEEEEECCS------SEEEEEEEETTEEEEEEBS------------
T ss_pred EECCEEEEEEc---------CCCEEEEEECcccEEEEEcCCCC------CCcEEEEeCCCeEEEEECC------------
Confidence 46777655543 246899999999987 4453111 1457788888865443200
Q ss_pred CCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCCCC------ceeeeeeCCCCceEE
Q 007338 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVL 190 (607)
Q Consensus 119 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~------~~~~~~~SpDg~~i~ 190 (607)
...|+++|+ +++.. .+..+. ....+.+ ++++|+
T Consensus 104 -------------------------------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~ly 144 (328)
T 3dsm_A 104 -------------------------------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVY 144 (328)
T ss_dssp -------------------------------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEE
T ss_pred -------------------------------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEE
Confidence 134555665 44322 222111 2234555 567777
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCcc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~ 270 (607)
++.... ...|.++|+++++....... ...+..+..+|||+ +++. .........
T Consensus 145 v~~~~~-----------~~~v~viD~~t~~~~~~i~~-------------g~~p~~i~~~~dG~--l~v~-~~~~~~~~~ 197 (328)
T 3dsm_A 145 VNCWSY-----------QNRILKIDTETDKVVDELTI-------------GIQPTSLVMDKYNK--MWTI-TDGGYEGSP 197 (328)
T ss_dssp EEECTT-----------CCEEEEEETTTTEEEEEEEC-------------SSCBCCCEECTTSE--EEEE-BCCBCTTCS
T ss_pred EEcCCC-----------CCEEEEEECCCCeEEEEEEc-------------CCCccceEEcCCCC--EEEE-ECCCccCCc
Confidence 764210 23799999998765442221 12344688889886 4333 221100000
Q ss_pred ccCCCceEEeccCCCCCCCCceeeeec--CcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee---cc
Q 007338 271 EVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD---RV 345 (607)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~l~~~--~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~---~~ 345 (607)
.......+++++. .++ +....... ......++|+||++.++... ..++++|+++++.....+.. ..
T Consensus 198 ~~~~~~~v~~id~--~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~------~~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 198 YGYEAPSLYRIDA--ETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWIN------NDIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp SCBCCCEEEEEET--TTT-EEEEEEECCTTCCCEEEEECTTSCEEEEES------SSEEEEETTCSSCCSSCSBCCCSSC
T ss_pred cccCCceEEEEEC--CCC-eEEEEEecCCCCCceeEEEecCCCEEEEEc------cEEEEEECCCCceeeeeeecCCCCc
Confidence 0001245777663 333 22211111 12456789999988655432 16899999874211111111 11
Q ss_pred ccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
... +.++|+++.+|+..
T Consensus 269 p~g---------i~vdp~~g~lyva~ 285 (328)
T 3dsm_A 269 YYG---------LTVNPNNGEVYVAD 285 (328)
T ss_dssp EEE---------EEECTTTCCEEEEE
T ss_pred eEE---------EEEcCCCCeEEEEc
Confidence 111 67888666677665
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0033 Score=62.82 Aligned_cols=167 Identities=9% Similarity=0.055 Sum_probs=90.4
Q ss_pred eEEEEeC-CCC-eeecC--CCCceeeeeeCC--CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCC
Q 007338 158 QLVLGSL-DGT-AKDFG--TPAVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (607)
Q Consensus 158 ~l~~~~~-~g~-~~~lt--~~~~~~~~~~Sp--Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (607)
++.++++ +++ .+.+. ....+..+.|+| ++++++..+.+ ..+.+||+.+++...+.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~~~~-- 169 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR-------------GTIGFQSYEDDSQYIVHSAKS-- 169 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT-------------CCEEEEESSSSCEEEEECCCS--
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEEecCC--
Confidence 4555565 444 33332 223467899999 99988877532 368999999877644432110
Q ss_pred CCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCc-eeeee-cCcccceeeEcCC
Q 007338 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LDLRFRSVSWCDD 309 (607)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~l~~-~~~~~~~~~ws~D 309 (607)
......+.|+|||+. +... . ....+.+++. ..+... ..+.. +...+..+.|+|+
T Consensus 170 ---------~~~i~~~~~~pdg~~--lasg---~--------~dg~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 170 ---------DVEYSSGVLHKDSLL--LALY---S--------PDGILDVYNL--SSPDQASSRFPVDEEAKIKEVKFADN 225 (343)
T ss_dssp ---------SCCCCEEEECTTSCE--EEEE---C--------TTSCEEEEES--SCTTSCCEECCCCTTSCEEEEEECTT
T ss_pred ---------CCceEEEEECCCCCE--EEEE---c--------CCCEEEEEEC--CCCCCCccEEeccCCCCEEEEEEeCC
Confidence 112456899999972 1111 1 1134556664 233222 23433 4556788999999
Q ss_pred CcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
|..|+.... + .|.+.|+...+ ....+....... .. .+...+.|+|+|+.++...
T Consensus 226 g~~l~s~~~---~--~v~iwd~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 226 GYWMVVECD---Q--TVVCFDLRKDV-GTLAYPTYTIPE-FK-TGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp SSEEEEEES---S--BEEEEETTSST-TCBSSCCCBC-------CCEEEEECTTSSEEEEEE
T ss_pred CCEEEEEeC---C--eEEEEEcCCCC-cceeeccccccc-cc-ccceEEEECCCCCEEEEec
Confidence 998776641 2 46666877632 112221100000 00 0001278999999877644
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.5e-05 Score=77.16 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=69.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+++++.||.+|+++++.|.+ . + +.|+||++|+. ++. + ...+.....|+++||.|+.
T Consensus 55 ~~~~~~~~~~~g~~i~~~~~~P~~-~--~--~~p~vv~~HG~------------~~~--~-~~~~~~~~~l~~~g~~v~~ 114 (318)
T 1l7a_A 55 KVYRLTYKSFGNARITGWYAVPDK-E--G--PHPAIVKYHGY------------NAS--Y-DGEIHEMVNWALHGYATFG 114 (318)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEESS-C--S--CEEEEEEECCT------------TCC--S-GGGHHHHHHHHHTTCEEEE
T ss_pred EEEEEEEEccCCCEEEEEEEeeCC-C--C--CccEEEEEcCC------------CCC--C-CCCcccccchhhCCcEEEE
Confidence 678899999999999999999987 2 2 34999998853 111 0 0111224578899999998
Q ss_pred CCCCceeccCCCCch---------------------hhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIGEGLWSNW---------------------FQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.+ |.|..... -+......|+.++++||.++..+|.+++
T Consensus 115 -~d~r--g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 175 (318)
T 1l7a_A 115 -MLVR--GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRI 175 (318)
T ss_dssp -ECCT--TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred -ecCC--CCCCCCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccee
Confidence 5543 33322111 1235778999999999999987887764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0014 Score=64.82 Aligned_cols=58 Identities=7% Similarity=0.135 Sum_probs=38.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--e---ecccCCCccccccccceEEec--CCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--K---PLFESPDICLNAVFGSFVWVN--NSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~---~lt~~~~~~~~~~~~~~~Wsp--d~~~l~~~ 104 (607)
.+....|||||+.||.... ...|.++|+.++.. + .+..+.. .+..+.|+| |+++++..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSS----------DQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred ceeEEEEcCCCCEEEEeeC----------CCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEE
Confidence 5889999999998877653 24677778876531 1 2222222 267889998 57777764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0023 Score=64.33 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=47.5
Q ss_pred eEEEeccCCCCCCCeeeeecCC-CCCcccceEEccC--CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
|.|.++. .+..+.+..+. ....+....|+|+ |+.|+.... ...|.++|+.+++...+.....
T Consensus 35 i~iw~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~- 99 (379)
T 3jrp_A 35 IKIFEVE----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY----------DGKVLIWKEENGRWSQIAVHAV- 99 (379)
T ss_dssp EEEEEEE----TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----------TSCEEEEEEETTEEEEEEEECC-
T ss_pred EEEEecC----CCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc----------CCEEEEEEcCCCceeEeeeecC-
Confidence 5666664 23233332222 2235889999988 888766543 2467888888886322211111
Q ss_pred cccccccceEEecC--CeEEEEE
Q 007338 84 CLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
....+..+.|+|+ +++++..
T Consensus 100 -~~~~v~~~~~~~~~~~~~l~~~ 121 (379)
T 3jrp_A 100 -HSASVNSVQWAPHEYGPLLLVA 121 (379)
T ss_dssp -CSSCEEEEEECCGGGCSEEEEE
T ss_pred -CCcceEEEEeCCCCCCCEEEEe
Confidence 1112668899998 7777764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0077 Score=61.09 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=48.0
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCC---EEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK---RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~---~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
.|.+.++. +++......+.. .+....|+|++. .|+.... ...|.++|+.+++.........
T Consensus 123 ~i~iwd~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 123 TLKVWDTN----TLQTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTR----------GPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp EEEEEETT----TTEEEEEEECSS--CEEEEEECSSCSSCCEEEEEES----------SSSEEEEESSSSCCCEEECCCC
T ss_pred eEEEeeCC----CCccceeccCCC--ceeeeEeecCCCCCcEEEEEcC----------CCeEEEEeCCCcceeeeecCCC
Confidence 36666765 555544443332 577888988554 6655442 3578899999876543322222
Q ss_pred ccccccccceEEecCCe-EEEEE
Q 007338 83 ICLNAVFGSFVWVNNST-LLIFT 104 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~-~l~~~ 104 (607)
. .+..+.|+|+++ +++..
T Consensus 187 ~----~v~~~~~~~~~~~ll~~~ 205 (408)
T 4a11_B 187 Q----EILAVSWSPRYDYILATA 205 (408)
T ss_dssp S----CEEEEEECSSCTTEEEEE
T ss_pred C----cEEEEEECCCCCcEEEEE
Confidence 1 266899999976 55554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.029 Score=58.28 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=46.1
Q ss_pred eeEEEeccCCCCCCCeee-eecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 6 GIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~-lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.|.+.++. +++... +.. ....+....|+|++ .|+... . ...|.++|+.+++..........
T Consensus 143 ~i~vwd~~----~~~~~~~~~~--h~~~V~~l~~~~~~-~l~s~s-~---------dg~i~vwd~~~~~~~~~~~~h~~- 204 (464)
T 3v7d_B 143 MIRVYDSI----NKKFLLQLSG--HDGGVWALKYAHGG-ILVSGS-T---------DRTVRVWDIKKGCCTHVFEGHNS- 204 (464)
T ss_dssp CEEEEETT----TTEEEEEECC--CSSCEEEEEECSTT-EEEEEE-T---------TSCEEEEETTTTEEEEEECCCSS-
T ss_pred cEEEEECC----CCcEEEEEeC--CCcCEEEEEEcCCC-EEEEEe-C---------CCCEEEEECCCCcEEEEECCCCC-
Confidence 35666765 443333 322 22368999999999 444332 2 35788889998876544332221
Q ss_pred ccccccceEEe--cCCeEEEEE
Q 007338 85 LNAVFGSFVWV--NNSTLLIFT 104 (607)
Q Consensus 85 ~~~~~~~~~Ws--pd~~~l~~~ 104 (607)
.+..+.|+ +++++++..
T Consensus 205 ---~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 205 ---TVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp ---CEEEEEEEESSSCEEEEEE
T ss_pred ---ccEEEEEecCCCCCEEEEE
Confidence 25677787 456666664
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0041 Score=61.84 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=35.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-------e-eecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------A-KPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+....|||||+.||..+. + ..|.++|+..+. . ..+..+. ..+..+.|+|++++|+.
T Consensus 60 ~v~~v~~sp~~~~las~s~--------D--~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp~g~~las 124 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSF--------D--STVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWSNDGYYLAT 124 (330)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEE
T ss_pred CEEEEEECCCCCEEEEEeC--------C--CcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEECCCCCEEEE
Confidence 5889999999998876553 3 356666775321 1 1222111 12668999999988776
Q ss_pred E
Q 007338 104 T 104 (607)
Q Consensus 104 ~ 104 (607)
.
T Consensus 125 ~ 125 (330)
T 2hes_X 125 C 125 (330)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.012 Score=58.54 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=70.8
Q ss_pred cccceEEccC---CCEEEEEeecCcccccCCCceeEEEEECCC-Ccee--ecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~--~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+....|||| |+.|+.... ...|.++|+.+ ++.. .+..+.. .+..+.|+|++++++...
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSW----------ANDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEET----------TSEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEEEEEE
T ss_pred ceEEEEEcCCCCCceEEEEECC----------CCcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEEEEEc
Confidence 6899999999 577666542 24678888886 4432 3322222 267899999988777642
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeec-CCCCceeeeee-
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GTPAVYTAVEP- 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l-t~~~~~~~~~~- 182 (607)
. ...|.++++ +++...+ .....+..+.|
T Consensus 106 ~-------------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 136 (368)
T 3mmy_A 106 C-------------------------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWI 136 (368)
T ss_dssp T-------------------------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEE
T ss_pred C-------------------------------------------------CCcEEEEEcCCCCceeeccccCceEEEEEE
Confidence 1 123444555 3433332 22345667888
Q ss_pred -CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 183 -SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 183 -SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
+|+++.|+....+ ..|.+||+.+++
T Consensus 137 ~~~~~~~l~~~~~d-------------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 137 KAPNYSCVMTGSWD-------------KTLKFWDTRSSN 162 (368)
T ss_dssp ECSSCEEEEEEETT-------------SEEEEECSSCSS
T ss_pred eCCCCCEEEEccCC-------------CcEEEEECCCCc
Confidence 9999888777532 368899987664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0025 Score=62.94 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=38.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee---ecccCCCccccccccceEEec--CCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVN--NSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~---~lt~~~~~~~~~~~~~~~Wsp--d~~~l~~~ 104 (607)
.+...+|||||++||-.+. + ..|.++|+.+++.. .+..+.. .+..+.|++ ++++|+..
T Consensus 15 ~V~~v~~s~~g~~lasgs~--------D--~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSS--------D--RSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp CEEEEEECGGGCEEEEEET--------T--TEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEE
T ss_pred eEEEeeEcCCCCEEEEEeC--------C--CeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEE
Confidence 5889999999999877653 2 46777788776532 2322222 266889985 36666654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.024 Score=58.29 Aligned_cols=57 Identities=4% Similarity=-0.083 Sum_probs=39.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......|+|||+ | |.+.. ....|+++|+++++...+...... .. +.|+++++.+++.
T Consensus 132 ~P~~la~d~~g~-l-yv~d~--------~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 132 YMWGIAAVGNNT-V-LAYQR--------DDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CEEEEEECSTTE-E-EEEET--------TTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEE
T ss_pred CceEEEEeCCCC-E-EEEec--------CCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEE
Confidence 356778999997 4 44432 346899999999887766433221 23 8999998877764
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=85.06 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=65.6
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchh-HHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~-q~la~~GY~Vl 559 (607)
..+.+.++..||.+|.+.+++|.+ + + +.|+||+.|+. +........+.... ++|+++||+|+
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~--~-~--~~P~vv~~~~~------------g~~~~~~~~y~~~~~~~la~~Gy~vv 70 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDA--D-G--PVPVLLVRNPY------------DKFDVFAWSTQSTNWLEFVRDGYAVV 70 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECC--S-S--CEEEEEEEESS------------CTTCHHHHHTTTCCTHHHHHTTCEEE
T ss_pred EEEEEEEECCCCCEEEEEEEECCC--C-C--CeeEEEEECCc------------CCCccccccchhhHHHHHHHCCCEEE
Confidence 457789999999999999999985 1 2 34999987541 11111000001123 89999999999
Q ss_pred eCCCCceeccCCC---CchhhHHHHhhcHHHHHHHHHHhcccccc
Q 007338 560 AGPSIPIIGEGLW---SNWFQVQRLLLKKLFDVEWLIQAELLLED 601 (607)
Q Consensus 560 ~~~~~~~~g~g~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 601 (607)
. .+. +|.|.. +.. + .+...|+.++|+||.++.+.++.
T Consensus 71 ~-~D~--RG~G~S~g~~~~-~-~~~~~D~~~~i~~l~~~~~~~~~ 110 (587)
T 3i2k_A 71 I-QDT--RGLFASEGEFVP-H-VDDEADAEDTLSWILEQAWCDGN 110 (587)
T ss_dssp E-EEC--TTSTTCCSCCCT-T-TTHHHHHHHHHHHHHHSTTEEEE
T ss_pred E-EcC--CCCCCCCCcccc-c-cchhHHHHHHHHHHHhCCCCCCe
Confidence 8 443 343332 221 2 45788999999999998877643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0011 Score=74.49 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=38.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
.+....|||||++|+.... + ..|.++|+.++....+..... ....+..+.|+++ +++++..
T Consensus 11 ~V~~l~~s~dg~~latg~~--------d--g~I~vwd~~~~~~~~~~~l~~--h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS--------D--KTIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp CEEEECCCSSSCCEEEEET--------T--TEEEEEEEETTEEEEEEEECC--CSSCEEEEEECCTTSCSEEEEE
T ss_pred eeEEEEECCCCCeEEEEEC--------C--CcEEEEecCCCCCccceeccC--CcCceEEEEecCCCCCCEEEEE
Confidence 5889999999998877643 2 467777776443322211111 1112678899977 7777764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.019 Score=56.96 Aligned_cols=229 Identities=10% Similarity=0.077 Sum_probs=115.1
Q ss_pred eEEEeccCCCCCCCe-eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc-c
Q 007338 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI-C 84 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~-~ 84 (607)
|.+.|++ +++. +++. .........+|||| +| |+++. ....|+++|+++++.......... .
T Consensus 66 v~viD~~----t~~~~~~i~---~~~~p~~i~~~~~g-~l-yv~~~--------~~~~v~~iD~~t~~~~~~i~~g~~~~ 128 (328)
T 3dsm_A 66 IFAIDIN----TFKEVGRIT---GFTSPRYIHFLSDE-KA-YVTQI--------WDYRIFIINPKTYEITGYIECPDMDM 128 (328)
T ss_dssp EEEEETT----TCCEEEEEE---CCSSEEEEEEEETT-EE-EEEEB--------SCSEEEEEETTTTEEEEEEECTTCCT
T ss_pred EEEEECc----ccEEEEEcC---CCCCCcEEEEeCCC-eE-EEEEC--------CCCeEEEEECCCCeEEEEEEcCCccc
Confidence 4555554 4554 4453 23357788899998 54 55542 346899999999886532221110 0
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
.......+.+ .++++++... + ....|.++|+
T Consensus 129 ~~~~p~~i~~-~~~~lyv~~~------------------------~------------------------~~~~v~viD~ 159 (328)
T 3dsm_A 129 ESGSTEQMVQ-YGKYVYVNCW------------------------S------------------------YQNRILKIDT 159 (328)
T ss_dssp TTCBCCCEEE-ETTEEEEEEC------------------------T------------------------TCCEEEEEET
T ss_pred cCCCcceEEE-ECCEEEEEcC------------------------C------------------------CCCEEEEEEC
Confidence 0001334555 3455544310 0 0235666776
Q ss_pred -CCCe-eecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~-~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+++. ..+........+.++|||+ ++++...... ..++..-...|+++|.+++++......+. ..
T Consensus 160 ~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~--~~~~~~~~~~v~~id~~t~~v~~~~~~~~-----------g~ 225 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYE--GSPYGYEAPSLYRIDAETFTVEKQFKFKL-----------GD 225 (328)
T ss_dssp TTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCT--TCSSCBCCCEEEEEETTTTEEEEEEECCT-----------TC
T ss_pred CCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCcc--CCccccCCceEEEEECCCCeEEEEEecCC-----------CC
Confidence 4543 2333223335788999987 5555433210 00000002479999999887654322110 11
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCce--e-eeecCcccceeeEcCC-CcEEEEEEe
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE--I-LHKLDLRFRSVSWCDD-SLALVNETW 318 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~-l~~~~~~~~~~~ws~D-g~~l~~~~~ 318 (607)
.+..+.++||++. | |+.. . .+++++. .++ +.. . +.........++++|+ +..++....
T Consensus 226 ~p~~la~~~d~~~-l-yv~~------------~-~v~~~d~--~t~-~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 226 WPSEVQLNGTRDT-L-YWIN------------N-DIWRMPV--EAD-RVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp CCEEEEECTTSCE-E-EEES------------S-SEEEEET--TCS-SCCSSCSBCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred CceeEEEecCCCE-E-EEEc------------c-EEEEEEC--CCC-ceeeeeeecCCCCceEEEEEcCCCCeEEEEccc
Confidence 3456999999883 3 3321 1 3455553 222 211 1 1111233556788885 445555410
Q ss_pred ccccceEEEEEcCCC
Q 007338 319 YKTSQTRTWLVCPGS 333 (607)
Q Consensus 319 ~~~~~~~l~~~dl~~ 333 (607)
.-.....|+++|+++
T Consensus 288 ~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQG 302 (328)
T ss_dssp TSSSEEEEEEECTTC
T ss_pred ccccCCEEEEECCCC
Confidence 001235788888774
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0074 Score=62.45 Aligned_cols=138 Identities=13% Similarity=0.232 Sum_probs=78.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--------eecccCCCccccccccceEEecC-CeEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--------KPLFESPDICLNAVFGSFVWVNN-STLLI 102 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--------~~lt~~~~~~~~~~~~~~~Wspd-~~~l~ 102 (607)
.+....|+|+++.++++.. ....|.++++..+.. ..+..+. ..+..+.|+|+ +.+++
T Consensus 183 ~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSAS---------DDHTICLWDINATPKEHRVIDAKNIFTGHT-----AVVEDVAWHLLHESLFG 248 (430)
T ss_dssp CCCCEEECTTSTTEEEEEC---------TTSCEEEEETTSCCBGGGEEECSEEECCCS-----SCEEEEEECSSCTTEEE
T ss_pred CeEEEEeCCCCCCeEEEEe---------CCCeEEEEeCCCCCCCCceeccceeecCCC-----CCEeeeEEeCCCCCEEE
Confidence 5789999999994334332 235788889987432 1121111 12568899985 55655
Q ss_pred EEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC----Ceeec-CCCCc
Q 007338 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG----TAKDF-GTPAV 176 (607)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g----~~~~l-t~~~~ 176 (607)
.... ...|.++++ ++ ....+ .....
T Consensus 249 s~~~-------------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 249 SVAD-------------------------------------------------DQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp EEET-------------------------------------------------TSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred EEeC-------------------------------------------------CCeEEEEECCCCCCCcceeEeecCCCC
Confidence 5311 123444444 22 12222 22335
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC--eeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
+..++|+|++++++++... ...|.+||+... .+..+.. -...+..+.|+|+++
T Consensus 280 v~~i~~~p~~~~~l~tg~~------------dg~v~vwd~~~~~~~~~~~~~-------------h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA------------DKTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSPHNE 334 (430)
T ss_dssp EEEEEECSSCTTEEEEEET------------TSEEEEEETTCTTSCSEEEEC-------------CSSCEEEEEECSSCT
T ss_pred eEEEEeCCCCCCEEEEEeC------------CCeEEEEeCCCCCCCeEEeec-------------CCCCEEEEEECCCCC
Confidence 6789999999977766542 236889998752 2233221 012234589999998
Q ss_pred ceE
Q 007338 255 STL 257 (607)
Q Consensus 255 ~~l 257 (607)
..+
T Consensus 335 ~~l 337 (430)
T 2xyi_A 335 TIL 337 (430)
T ss_dssp TEE
T ss_pred CEE
Confidence 533
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=74.63 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=70.6
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCC-c-CCCC---CCchhHHHhcc
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-E-FSGM---TPTSSLIFLAR 554 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~-~-~~~~---~~~~~q~la~~ 554 (607)
..+.++|++. ||.++++++++|+++++++++ |+||++|++..+. ..+. . .... .+....+.+.+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~~~--Pvvv~lHG~g~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~ 212 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDRKY--PLVVFLHGAGERG--------TDNYLQVAGNRGAVVWAQPRYQVVH 212 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTSCE--EEEEEECCGGGCS--------SSSSHHHHSSTTTTGGGSHHHHTTS
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCCCc--cEEEEECCCCCCC--------CchhhhhhccccceeecCccccccC
Confidence 5678899999 999999999999998877755 9999998652110 0000 0 0000 01123456677
Q ss_pred CeEEEeCCCCcee-ccCCC----CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 555 RFAVLAGPSIPII-GEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 555 GY~Vl~~~~~~~~-g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
|+.|+. ++.+.. +.|.. ...........++++.|++++++--+|.+++
T Consensus 213 ~~~vv~-pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri 265 (380)
T 3doh_A 213 PCFVLA-PQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRI 265 (380)
T ss_dssp CCEEEE-ECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CEEEEE-ecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcE
Confidence 889998 443321 12221 1111124567889999999999988887764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.011 Score=58.23 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=38.7
Q ss_pred cccceEEcc--CCCEEEEEeecCcccccCCCceeEEEEECCCCce----------eecccCCCccccccccceEEecC--
Q 007338 32 KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA----------KPLFESPDICLNAVFGSFVWVNN-- 97 (607)
Q Consensus 32 ~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~----------~~lt~~~~~~~~~~~~~~~Wspd-- 97 (607)
.+....|+| ||+.|+.... ...|.++|+.+++. ..+.... ..+..+.|+|+
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~ 123 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASY----------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----GSLYSVKFAPAHL 123 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEET----------TSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----SCEEEEEECCGGG
T ss_pred cEEEEEEcCCCCCCEEEEEcC----------CCeEEEEecCCCcccccccCcceeeeecccC-----CceeEEEEcCCCC
Confidence 689999999 6988876653 24677788877642 2222111 12568899998
Q ss_pred CeEEEEE
Q 007338 98 STLLIFT 104 (607)
Q Consensus 98 ~~~l~~~ 104 (607)
+++++..
T Consensus 124 ~~~l~~~ 130 (351)
T 3f3f_A 124 GLKLACL 130 (351)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 7777764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.015 Score=55.70 Aligned_cols=60 Identities=10% Similarity=-0.003 Sum_probs=39.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....+.|+|+++.|+++-. ....|++++++++....+...... ....+.+.++++.+|++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~~~~~~~~~~----~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI---------SEPSIGRASLHGGEPTTIIRQDLG----SPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEETTTTEEEEEET---------TTTEEEEEESSSCCCEEEECTTCC----CEEEEEEETTTTEEEEE
T ss_pred cEEEEEEecCCCEEEEEEC---------CCCEEEEEecCCCCcEEEEECCCC----CccEEEEEecCCeEEEE
Confidence 4678999999999877642 356899999998765544321100 14577888875555543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.02 Score=55.69 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=37.6
Q ss_pred cccceEEccC--CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
.+....|+|+ |+.||-.+. + ..|.++|+.+++...+..... ....+..+.|+|+ +.+++..
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~--------D--~~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~ 119 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSY--------D--GKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVA 119 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEET--------T--TEEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEE
T ss_pred CeEEEEecCCCcCCEEEEEcC--------C--CEEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEE
Confidence 5888999874 887765542 2 467788998875333221110 0112668899987 6666654
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.60 E-value=7.3e-05 Score=70.56 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=66.8
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+..+.+++++ +|.++.++++.|.+-. + +.|+||++|+. ++.... .....+.|+++||.|+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~p~~~~--~--~~p~vv~~HG~------------~g~~~~---~~~~~~~l~~~G~~v~ 63 (241)
T 3f67_A 4 IIAGETSIPS-QGENMPAYHARPKNAD--G--PLPIVIVVQEI------------FGVHEH---IRDLCRRLAQEGYLAI 63 (241)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEETTCC--S--CEEEEEEECCT------------TCSCHH---HHHHHHHHHHTTCEEE
T ss_pred ceeeeEEEec-CCcceEEEEecCCCCC--C--CCCEEEEEcCc------------CccCHH---HHHHHHHHHHCCcEEE
Confidence 3578899988 9999999999998632 2 34999998852 111111 0122568999999999
Q ss_pred eCCCCceec-cCCCCc--h---------hhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 560 AGPSIPIIG-EGLWSN--W---------FQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g-~g~~~~--~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. ++.+.+| ...... . ........|+.++++||.+++ +|.+++
T Consensus 64 ~-~d~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i 117 (241)
T 3f67_A 64 A-PELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRL 117 (241)
T ss_dssp E-ECTTTTTCCGGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEE
T ss_pred E-ecccccCCCCCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeE
Confidence 8 5543221 111111 0 112467889999999999998 676654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0022 Score=66.65 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=39.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC-----ce-ee---cccCCCccccccccceEEecC-CeEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-----EA-KP---LFESPDICLNAVFGSFVWVNN-STLL 101 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-----~~-~~---lt~~~~~~~~~~~~~~~Wspd-~~~l 101 (607)
.+....|||||++||...... .....|.++|+.++ +. +. +.... .....+..+.|+|+ +.++
T Consensus 94 ~v~~l~~spdg~~lav~~~sg------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK--DAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC--SGGGSEEEEEECSSCTTEE
T ss_pred cccEEEEcCCCCEEEEEEecc------CCCceEEEEEccccccCCcCCcceeeeeeccC--CCCCceEEEEECCCCCCEE
Confidence 488999999999998643111 23467888898754 11 11 11101 01123668999998 6777
Q ss_pred EEE
Q 007338 102 IFT 104 (607)
Q Consensus 102 ~~~ 104 (607)
+..
T Consensus 166 as~ 168 (434)
T 2oit_A 166 AVC 168 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0091 Score=58.91 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=40.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|++++...++.+. .....|.++|+.+++.......... .+..+.|+|++++++..
T Consensus 173 ~v~~~~~~~~~~~~~~~s~--------~~d~~i~i~d~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSC--------GWDKLVKVWNLANCKLKTNHIGHTG----YLNTVTVSPDGSLCASG 233 (340)
T ss_dssp CEEEEEECSCSSSCEEEEE--------ETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEE
T ss_pred cccceEEccCCCCcEEEEE--------cCCCEEEEEECCCCceeeEecCCCC----cEEEEEECCCCCEEEEE
Confidence 5677899998876554432 1235688889998876544322221 26688999999887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.044 Score=52.33 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=31.1
Q ss_pred ceEEEEeCCC-CeeecCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 157 AQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 157 ~~l~~~~~~g-~~~~lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
..|++++++| ..+.+... .....++++|++..|+++... ...|+++++++..
T Consensus 58 ~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~------------~~~I~~~~~~g~~ 112 (267)
T 1npe_A 58 PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ------------LDRIEVAKMDGTQ 112 (267)
T ss_dssp TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCS
T ss_pred CEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC------------CCEEEEEEcCCCC
Confidence 3566666644 33333221 234578899988888877432 2367888877653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.047 Score=55.57 Aligned_cols=132 Identities=13% Similarity=0.048 Sum_probs=75.8
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
+++...+. ........+.|.+.+++|+|+-. ....|++++++++..+.+...... ....+++.+.
T Consensus 105 ~~~~~~~~--~~~~~~~gl~~d~~~~~ly~~D~---------~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~ 169 (386)
T 3v65_B 105 RSEYTLLL--NNLENAIALDFHHRRELVFWSDV---------TLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWV 169 (386)
T ss_dssp SCCCEEEE--CSCSCEEEEEEETTTTEEEEEET---------TTTEEEEEETTSCCEEEEECSSCS----CCCCEEEETT
T ss_pred CCcEEEEe--cCCCccEEEEEecCCCeEEEEeC---------CCCcEEEEecCCCCcEEEEeCCCC----CccEEEEEeC
Confidence 44444443 22335778899998888877642 346899999998876555322111 1346777766
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCCC--
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP-- 174 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~~-- 174 (607)
+..||++.. ....|++++++|. .+.+...
T Consensus 170 ~g~lY~~d~------------------------------------------------~~~~I~~~~~dg~~~~~l~~~~l 201 (386)
T 3v65_B 170 HDKLYWTDS------------------------------------------------GTSRIEVANLDGAHRKVLLWQSL 201 (386)
T ss_dssp TTEEEEEET------------------------------------------------TTTEEEECBTTSCSCEEEECSSC
T ss_pred CCeEEEEcC------------------------------------------------CCCeEEEEeCCCCceEEeecCCC
Confidence 444454310 0124555555442 2222221
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
.....+++.|++.+|+++.... ...|+++++++...+.
T Consensus 202 ~~P~giavdp~~g~ly~td~~~-----------~~~I~r~~~dG~~~~~ 239 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGN-----------TPRIEASSMDGSGRRI 239 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEE
T ss_pred CCCcEEEEEcCCCeEEEeccCC-----------CCEEEEEeCCCCCcEE
Confidence 2335788999888888874321 1368888887764433
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=71.07 Aligned_cols=98 Identities=9% Similarity=-0.008 Sum_probs=67.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+.+++ ||.+|.++++.|. +. |+||++|+. ++.... +....+.|+.+||.|+.
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~------~~--p~vv~~HG~------------~~~~~~---~~~~~~~l~~~g~~v~~ 60 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT------GM--PGVLFVHGW------------GGSQHH---SLVRAREAVGLGCICMT 60 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE------SE--EEEEEECCT------------TCCTTT---THHHHHHHHTTTCEEEC
T ss_pred ceeeEEecC-CCeEEEEEEecCC------CC--cEEEEeCCC------------CCCcCc---HHHHHHHHHHCCCEEEE
Confidence 467788887 8899999999997 12 999998853 111111 11235789999999998
Q ss_pred CCCCceecc-CCCCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIGE-GLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g~-g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.+..|. .............+|+.+++++|.++..+|.+++
T Consensus 61 -~d~~G~g~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v 103 (290)
T 3ksr_A 61 -FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSI 103 (290)
T ss_dssp -CCCTTSGGGGGGTTTCBHHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred -eecCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCCccce
Confidence 66543331 1112222346778999999999999987776653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.084 Score=51.19 Aligned_cols=58 Identities=21% Similarity=0.463 Sum_probs=39.7
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...|||++ .||... + ..|.++|+++|+..++..... ....+..+.|+|++++++..
T Consensus 28 ~~~l~WS~~~-~lAvg~---------D--~tV~iWd~~tg~~~~~~~~~~--~~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL---------D--NSVYLWSASSGDILQLLQMEQ--PGEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CBCEEECTTS-EEEEEE---------T--TEEEEEETTTCCEEEEEECCS--TTCCEEEEEECTTSSEEEEE
T ss_pred ceEEEECCCC-EEEEEe---------C--CEEEEEECCCCCEEEEEEecC--CCCeEEEEEECCCCCEEEEE
Confidence 4668999997 666543 2 468999999998765543221 11225688999999887764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.083 Score=50.06 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=98.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
......++|||+ |+++.. .....|++++..++....+..... .....+.+++++++++...
T Consensus 25 ~p~~i~~~~~g~-l~v~~~--------~~~~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~~~------ 85 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSE--------GMYGRVVKLATGSTGTTVLPFNGL----YQPQGLAVDGAGTVYVTDF------ 85 (270)
T ss_dssp CEEEEEECTTCC-EEEEEC--------SSSCEEEEECC-----EECCCCSC----CSCCCEEECTTCCEEEEET------
T ss_pred CccceEECCCCC-EEEEcc--------CCCCcEEEecCCCcccceEeeCCc----CCcceeEECCCCCEEEEcC------
Confidence 466789999997 444243 234689999987766544421111 1145778888888555420
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCC--CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~--~~~~~~~~SpDg~~ 188 (607)
...|++++.++ ....+... .....+.++|||+
T Consensus 86 --------------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~- 120 (270)
T 1rwi_B 86 --------------------------------------------NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA- 120 (270)
T ss_dssp --------------------------------------------TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-
T ss_pred --------------------------------------------CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-
Confidence 12344555533 22223211 2345788999986
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
|+++... ...|++++..+......... ....+..+.++++|+ + |+....
T Consensus 121 l~v~~~~------------~~~i~~~~~~~~~~~~~~~~------------~~~~p~~i~~~~~g~--l-~v~~~~---- 169 (270)
T 1rwi_B 121 VYVADRG------------NNRVVKLAAGSKTQTVLPFT------------GLNDPDGVAVDNSGN--V-YVTDTD---- 169 (270)
T ss_dssp EEEEEGG------------GTEEEEECTTCCSCEECCCC------------SCCSCCCEEECTTCC--E-EEEEGG----
T ss_pred EEEEECC------------CCEEEEEECCCceeEeeccc------------cCCCceeEEEeCCCC--E-EEEECC----
Confidence 5555321 13678887654433222110 012345688888886 3 332211
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
...++.++. .+.......... .....++++++|..++... ....|++++.++
T Consensus 170 ------~~~i~~~~~---~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~ 222 (270)
T 1rwi_B 170 ------NNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGS 222 (270)
T ss_dssp ------GTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTC
T ss_pred ------CCEEEEEec---CCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCC
Confidence 123444442 111111111111 2345678899986555542 124788999877
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.11 Score=51.84 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=71.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
....+.|.|.++.|+|+-. ....|++++++++..+.+...... ....++..+.++.||++..
T Consensus 74 ~~~~l~~d~~~~~ly~~D~---------~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~~g~ly~~d~----- 135 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDV---------TLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWVHDKLYWTDS----- 135 (349)
T ss_dssp CEEEEEEETTTTEEEEEET---------TTTEEEEEETTSCSCEEEECSSCS----CCCEEEEETTTTEEEEEET-----
T ss_pred ceEEEEEeccccEEEEEec---------cCCceEEEecCCCCceEEEeCCCC----CccEEEEecCCCeEEEEcC-----
Confidence 4677889998888877642 346899999998776555322111 1345667665444444310
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCCC--CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~~--~~~~~~~~SpDg~~ 188 (607)
....|++++++|. .+.+... .....++++|++.+
T Consensus 136 -------------------------------------------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 136 -------------------------------------------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp -------------------------------------------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred -------------------------------------------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 1235666676553 2223222 23357889998888
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
|+++.... ...|+++++++...+.
T Consensus 173 ly~td~~~-----------~~~I~r~~~dG~~~~~ 196 (349)
T 3v64_C 173 IYWTDWGN-----------TPRIEASSMDGSGRRI 196 (349)
T ss_dssp EEEEECSS-----------SCEEEEEETTSCSCEE
T ss_pred EEEeccCC-----------CCEEEEEeCCCCCcEE
Confidence 88885321 1368888887764433
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.42 E-value=0.03 Score=54.61 Aligned_cols=149 Identities=9% Similarity=0.048 Sum_probs=80.1
Q ss_pred eEEEeccCCCCCCCeeeeecCC----CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec-ccCC
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYP----DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESP 81 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~----~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l-t~~~ 81 (607)
|+..++. +++.+.+.. + .........++||+..|++... ...|+++|.+ |+.+.+ ....
T Consensus 48 i~~~d~~----~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~----------~~~l~~~d~~-g~~~~~~~~~~ 111 (314)
T 1pjx_A 48 ILRIDLK----TGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM----------RLGLLVVQTD-GTFEEIAKKDS 111 (314)
T ss_dssp EEEECTT----TCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET----------TTEEEEEETT-SCEEECCSBCT
T ss_pred EEEEeCC----CCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC----------CCCEEEEeCC-CCEEEEEeccC
Confidence 5555544 666665542 1 1124677889999334444332 1379999999 877666 4321
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
.......+..+.+++++++++.......... .+.. . .. .....|++
T Consensus 112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~------------------------~~~~--~--~~------~~~~~l~~ 157 (314)
T 1pjx_A 112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAPA------------------------DYTR--S--MQ------EKFGSIYC 157 (314)
T ss_dssp TSCBCBCCCEEEECTTSCEEEEECBCBCTTS------------------------CCCB--T--TS------SSCEEEEE
T ss_pred CCccccCCcCEEECCCCCEEEEecCcccccc------------------------cccc--c--cc------CCCCeEEE
Confidence 1110112457888899988776421110000 0000 0 00 01357788
Q ss_pred EeCCCCeeecCC-CCceeeeeeC----CCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 162 GSLDGTAKDFGT-PAVYTAVEPS----PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 162 ~~~~g~~~~lt~-~~~~~~~~~S----pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
++.+++...+.. ......+.|+ |||+.|++.... ...|++++++
T Consensus 158 ~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~------------~~~i~~~~~~ 206 (314)
T 1pjx_A 158 FTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIK 206 (314)
T ss_dssp ECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEE
T ss_pred ECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC------------CCeEEEEECC
Confidence 877665544321 1223567899 999888777432 1368888765
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00039 Score=64.50 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=63.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+++++.|| ++.++++.|.+-.+ ++ .|+||++|+.... ++... ........+.|+++||.|+.
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~~~-~~--~~~vv~~HG~~~~---------~~~~~-~~~~~~~~~~l~~~g~~v~~ 74 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPDVA-VQ--PVTAIVCHPLSTE---------GGSMH-NKVVTMAARALRELGITVVR 74 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTSC-CC--SEEEEEECSCTTT---------TCSTT-CHHHHHHHHHHHTTTCEEEE
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCCCc-cc--cCEEEEECCCCCc---------CCccc-chHHHHHHHHHHHCCCeEEE
Confidence 678899999999 99999999986311 12 3999998853110 11100 00001124688999999998
Q ss_pred CCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHHhc
Q 007338 561 GPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 561 ~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
++.+ |.|.. ...........|+.+.+++|.++.
T Consensus 75 -~d~~--g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~ 108 (220)
T 2fuk_A 75 -FNFR--SVGTSAGSFDHGDGEQDDLRAVAEWVRAQR 108 (220)
T ss_dssp -ECCT--TSTTCCSCCCTTTHHHHHHHHHHHHHHHHC
T ss_pred -EecC--CCCCCCCCcccCchhHHHHHHHHHHHHhcC
Confidence 5553 33332 111233567889999999999874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.41 E-value=0.11 Score=50.51 Aligned_cols=69 Identities=9% Similarity=0.034 Sum_probs=38.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
....+.|+|||+ |++.+...... ......|+++|+++++.+.+...........+..+.++++ +++++.
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEVEVN--GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEET--TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CccCceECCCCC-EEEEEeccccC--CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 467999999995 55551000000 0123579999998888776642000000111456778888 776665
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00062 Score=66.92 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=61.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC---chhHHHhccC--
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP---TSSLIFLARR-- 555 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~---~~~q~la~~G-- 555 (607)
+.+.++|++.+| ++..+||+|++|+++++| |+||+.|++. +....|..... ...+.|+++|
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~~~~~~~--Pvlv~lHG~~-----------~~~~~~~~~~~~~~~~~~~l~~~g~~ 105 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGYDPNKKY--NIFYLMHGGG-----------ENENTIFSNDVKLQNILDHAIMNGEL 105 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTSCC--EEEEEECCTT-----------CCTTSTTSTTTCHHHHHHHHHHTTSS
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCCCCCCCC--CEEEEECCCC-----------CCcchhhcccchHHHHHHHHHHcCCC
Confidence 678899999887 999999999999877666 9999988641 11111211111 1234666664
Q ss_pred --eEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHH
Q 007338 556 --FAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLI 593 (607)
Q Consensus 556 --Y~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~ 593 (607)
|+|+. ++. +| +...+..|...++++++..|+...
T Consensus 106 ~~~ivv~-pd~--~~-~~~~~~~~~~~~~~~l~~~i~~~~ 141 (297)
T 1gkl_A 106 EPLIVVT-PTF--NG-GNCTAQNFYQEFRQNVIPFVESKY 141 (297)
T ss_dssp CCEEEEE-CCS--CS-TTCCTTTHHHHHHHTHHHHHHHHS
T ss_pred CCEEEEE-ecC--cC-CccchHHHHHHHHHHHHHHHHHhC
Confidence 99998 442 22 112344566777788887777653
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00024 Score=72.23 Aligned_cols=101 Identities=9% Similarity=0.057 Sum_probs=61.4
Q ss_pred CceEEEEEECCCCceEEEEEEc-CCCC--------------------CCCCCCCCCEEEEeccCCccCcccCCccccCCC
Q 007338 480 LQKEMIKYQRKDGVPLTATLYL-PPGY--------------------DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN 538 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~-P~~~--------------------~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~ 538 (607)
...+.+++.+.|| +...+|+ |.+. .+++ ++|+||++|++-+.. +...
T Consensus 62 v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~Pvvv~~HGGg~~~--------g~~~ 129 (365)
T 3ebl_A 62 VSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAE--PFPVIIFFHGGSFVH--------SSAS 129 (365)
T ss_dssp EEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSS--CCEEEEEECCSTTTS--------CCTT
T ss_pred CceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCC--cceEEEEEcCCcccc--------CCCc
Confidence 3778899999999 7888887 9764 2223 569999998652211 1111
Q ss_pred cCCCCCCchhHHHhcc-CeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc----ccccc
Q 007338 539 EFSGMTPTSSLIFLAR-RFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE----LLLED 601 (607)
Q Consensus 539 ~~~~~~~~~~q~la~~-GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~ 601 (607)
.. .+....+.||++ ||+|+. ++. ++.+.. .+ ...++|+.++++||.++. .+|.+
T Consensus 130 ~~--~~~~~~~~la~~~g~~Vv~-~dy--R~~p~~---~~-~~~~~D~~~a~~~l~~~~~~~~~~d~~ 188 (365)
T 3ebl_A 130 ST--IYDSLCRRFVKLSKGVVVS-VNY--RRAPEH---RY-PCAYDDGWTALKWVMSQPFMRSGGDAQ 188 (365)
T ss_dssp BH--HHHHHHHHHHHHHTSEEEE-ECC--CCTTTS---CT-THHHHHHHHHHHHHHHCTTTEETTTTE
T ss_pred hh--hHHHHHHHHHHHCCCEEEE-eeC--CCCCCC---CC-cHHHHHHHHHHHHHHhCchhhhCCCCC
Confidence 00 001124678776 999998 432 222111 12 355789999999999875 45766
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.18 Score=52.20 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=33.3
Q ss_pred EEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.++++++.|+.... ...|.++|+.+++.......... .+..+.|++++ +++.
T Consensus 127 ~~~~~~~~l~sgs~----------dg~i~vwd~~~~~~~~~~~~h~~----~V~~l~~~~~~-~l~s 178 (464)
T 3v7d_B 127 CLQFEDNYVITGAD----------DKMIRVYDSINKKFLLQLSGHDG----GVWALKYAHGG-ILVS 178 (464)
T ss_dssp EEEEETTEEEEEET----------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECSTT-EEEE
T ss_pred EEEECCCEEEEEcC----------CCcEEEEECCCCcEEEEEeCCCc----CEEEEEEcCCC-EEEE
Confidence 56678887766543 35788889998876543322222 26788999888 4343
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.36 E-value=0.061 Score=54.35 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=27.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
......+||||++|+. .+. .....|.++|+++++..
T Consensus 138 ~P~~~a~spDGk~lyV-an~-------~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLF-YQF-------SPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp CGGGEEECTTSSEEEE-EEC-------SSSCEEEEEETTTTEEE
T ss_pred CCceEEEcCCCCEEEE-EEc-------CCCCeEEEEECCCCcEE
Confidence 4678899999998655 443 23478999999999864
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00027 Score=68.30 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=59.5
Q ss_pred EEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 485 i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
.+|.+.||.++.+++..|....+++ +.|+||++|++.+. .+....+ ....+.|+++||.|+. ++.
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~~~--~~p~vv~~HGgg~~--------~~~~~~~----~~~~~~l~~~G~~v~~-~d~ 81 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNENY--TFPAIIICPGGGYQ--------HISQRES----DPLALAFLAQGYQVLL-LNY 81 (276)
T ss_dssp EECCCBTTBEEEEECCCC------C--CBCEEEEECCSTTT--------SCCGGGS----HHHHHHHHHTTCEEEE-EEC
T ss_pred ccccCCCCeEEEEEEeCCcccccCC--CCCEEEEEcCCccc--------cCCchhh----HHHHHHHHHCCCEEEE-ecC
Confidence 4667789999999988886544334 34999998864111 0111111 1225789999999998 444
Q ss_pred ceeccCCCCchhhHHHHhhcHHHHHHHHHHhcc---ccccc
Q 007338 565 PIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAEL---LLEDT 602 (607)
Q Consensus 565 ~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~ 602 (607)
+ |.|...+.........|+.++++||.+..- +|.++
T Consensus 82 ~--g~g~s~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~ 120 (276)
T 3hxk_A 82 T--VMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQ 120 (276)
T ss_dssp C--CTTSCCCSCTHHHHHHHHHHHHHHHHHHTTTTTBCTTC
T ss_pred c--cCCCcCCCCcCchHHHHHHHHHHHHHHhHHHcCCCcce
Confidence 3 333321111224667899999999998742 45554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.019 Score=59.23 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=39.7
Q ss_pred CcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCC---Ccee--ecccCCCccccccccceEEecCCeEEEEE
Q 007338 31 AKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET---GEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 31 ~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~---g~~~--~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+....||| ||+.||.... ...|.++|+.+ +... .++.... ..+..+.|+|++++++..
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~----------dg~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSD----------QGVIKIWNLKEIIVGEVYSSSLTYDCS----STVTQITMIPNFDAFAVS 129 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEET----------TSEEEEEEHHHHHTTCCCSCSEEEECS----SCEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEecC----------CceEEEeECcccccCcccceeeeccCC----CCEEEEEEeCCCCEEEEE
Confidence 3689999999 9998877653 24777888876 4321 1111111 126789999998877765
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00045 Score=68.63 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=63.6
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 558 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~V 558 (607)
...+.+++.+.||.+|.+++|.|.+ + +.|+||++|++-| +.++...+ ......|| ..||+|
T Consensus 58 ~~~~~~~i~~~~G~~i~~~~~~P~~----~--~~p~vv~~HGgG~--------~~g~~~~~----~~~~~~la~~~g~~v 119 (317)
T 3qh4_A 58 VAVADDVVTGEAGRPVPVRIYRAAP----T--PAPVVVYCHAGGF--------ALGNLDTD----HRQCLELARRARCAV 119 (317)
T ss_dssp CEEEEEEEECTTSCEEEEEEEECSC----S--SEEEEEEECCSTT--------TSCCTTTT----HHHHHHHHHHHTSEE
T ss_pred ceEEEEEecCCCCCeEEEEEEecCC----C--CCcEEEEECCCcC--------ccCChHHH----HHHHHHHHHHcCCEE
Confidence 4678899999999999999999986 2 3499999986411 11111111 11245666 559999
Q ss_pred EeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh---cccccccc
Q 007338 559 LAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA---ELLLEDTL 603 (607)
Q Consensus 559 l~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~ 603 (607)
+. ++. ++.+... + ...++|+.++++||.+. --+|.+++
T Consensus 120 v~-~dy--r~~p~~~---~-p~~~~D~~~a~~~l~~~~~~~~~d~~ri 160 (317)
T 3qh4_A 120 VS-VDY--RLAPEHP---Y-PAALHDAIEVLTWVVGNATRLGFDARRL 160 (317)
T ss_dssp EE-ECC--CCTTTSC---T-THHHHHHHHHHHHHHHTHHHHTEEEEEE
T ss_pred EE-ecC--CCCCCCC---C-chHHHHHHHHHHHHHhhHHhhCCCcceE
Confidence 98 442 1222211 2 35578999999999985 12366554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.048 Score=56.00 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=40.4
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEec
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
++..+.+... ..... +.|+|+|+.|+.... .+...||+++..++.. +.+....... ......+.++|
T Consensus 161 ~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~--------~~~~~I~~~d~~~~~~~~~~g~~~~~~-~~~p~~iav~p 228 (409)
T 3hrp_A 161 DNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGW--------EGTHTVYVYMKASGWAPTRIGQLGSTF-SGKIGAVALDE 228 (409)
T ss_dssp TTEEEEEEET--CCBCB-CEECTTSSEEEEEBS--------STTCEEEEEEGGGTTCEEEEEECCTTS-CSCCCBCEECT
T ss_pred CCEEEEeecc--CCCCc-eeEecCCCcEEEEec--------CCCceEEEEEcCCCceeEEeeeccchh-cCCcEEEEEeC
Confidence 4555555422 21234 999999998766542 2334899999987654 3331000000 01145788888
Q ss_pred C-CeEEE
Q 007338 97 N-STLLI 102 (607)
Q Consensus 97 d-~~~l~ 102 (607)
+ +.+++
T Consensus 229 ~~g~lyv 235 (409)
T 3hrp_A 229 TEEWLYF 235 (409)
T ss_dssp TSSEEEE
T ss_pred CCCeEEE
Confidence 5 66655
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00071 Score=67.41 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=62.9
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 558 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~V 558 (607)
...+.+++++.|| +|.+++|+|.+-. .|+||++|++.| +.++...+ ......||+ +||+|
T Consensus 61 ~~~~~~~~~~~~g-~i~~~~~~p~~~~------~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~V 121 (326)
T 3ga7_A 61 MTTRTCAVPTPYG-DVTTRLYSPQPTS------QATLYYLHGGGF--------ILGNLDTH----DRIMRLLARYTGCTV 121 (326)
T ss_dssp CEEEEEEECCTTS-CEEEEEEESSSSC------SCEEEEECCSTT--------TSCCTTTT----HHHHHHHHHHHCSEE
T ss_pred cceEEEEeecCCC-CeEEEEEeCCCCC------CcEEEEECCCCc--------ccCChhhh----HHHHHHHHHHcCCEE
Confidence 3458999999999 9999999997521 299999986421 11111111 112457777 79999
Q ss_pred EeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 559 LAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 559 l~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
+. ++. ++.+.. .+ ...+.|+.++++||++.. -+|.+++
T Consensus 122 ~~-~dy--r~~p~~---~~-~~~~~D~~~a~~~l~~~~~~~~~d~~ri 162 (326)
T 3ga7_A 122 IG-IDY--SLSPQA---RY-PQAIEETVAVCSYFSQHADEYSLNVEKI 162 (326)
T ss_dssp EE-ECC--CCTTTS---CT-THHHHHHHHHHHHHHHTTTTTTCCCSEE
T ss_pred EE-eeC--CCCCCC---CC-CcHHHHHHHHHHHHHHhHHHhCCChhhe
Confidence 98 443 222221 22 234689999999999874 2366653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.02 Score=57.71 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=25.2
Q ss_pred eEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 63 RVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 63 ~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+.++|+++++...-..... .. .+..+||++.+|.+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~-----~P-~i~~spDg~~lyVa 82 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF-----LS-LAVAGHSGSDFALA 82 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT-----TC-EEEECTTSSCEEEE
T ss_pred eEEEEECCCCeEEEEEeCCC-----CC-ceEECCCCCEEEEE
Confidence 89999999998753332222 13 68999998876664
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00039 Score=71.48 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred ceEEEEEECCC--Cc--eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcC--CCCCCchhHHHhcc
Q 007338 481 QKEMIKYQRKD--GV--PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF--SGMTPTSSLIFLAR 554 (607)
Q Consensus 481 ~~e~i~~~s~D--G~--~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~--~~~~~~~~q~la~~ 554 (607)
....|.|++.| |. .+.|+|+.|.+..+.+ +.|+||++|+...+.. . ..+..+ ...+....+.|+++
T Consensus 45 ~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~--~~P~vv~~HG~~~~~~----~--~~~~~~~~~~~~~~~~~~l~~~ 116 (397)
T 3h2g_A 45 RVAEFTYATIGVEGEPATASGVLLIPGGERCSG--PYPLLGWGHPTEALRA----Q--EQAKEIRDAKGDDPLVTRLASQ 116 (397)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEECTTCCS--CEEEEEEECCCCCBTT----C--CHHHHHHHTTTCSHHHHTTGGG
T ss_pred EEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCC--CCcEEEEeCCCcCCCC----c--ccccccccccchHHHHHHHHHC
Confidence 56677776654 53 6999999999875444 4499999886421100 0 000000 00112336789999
Q ss_pred CeEEEeCCCCceeccCCC--Cchhh-----HHHHhhcHHHHHHHHHHh-cccccccc
Q 007338 555 RFAVLAGPSIPIIGEGLW--SNWFQ-----VQRLLLKKLFDVEWLIQA-ELLLEDTL 603 (607)
Q Consensus 555 GY~Vl~~~~~~~~g~g~~--~~~~~-----~~~~~~~~~~~v~~~~~~-~~~~~~~~ 603 (607)
||+|+. ++.+ |.|.. ....+ ....+.|.++++..++++ ++.|++++
T Consensus 117 G~~V~~-~D~~--G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i 170 (397)
T 3h2g_A 117 GYVVVG-SDYL--GLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKV 170 (397)
T ss_dssp TCEEEE-ECCT--TSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEE-ecCC--CCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcE
Confidence 999998 5553 33332 11111 112344566676776655 67655553
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00078 Score=61.85 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=62.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..|.+.+++.|| +|+++++.|.+ . + +.|+||++|+.... ++..... ......+.|+++||.|+.
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-~--~--~~~~vv~~HG~~~~---------~~~~~~~-~~~~~~~~l~~~g~~v~~ 68 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-I--E--KSVTGIICHPHPLH---------GGTMNNK-VVTTLAKALDELGLKTVR 68 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-C--C--CSEEEEEECSCGGG---------TCCTTCH-HHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-C--C--CCCEEEEEcCCCCC---------CCccCCc-hHHHHHHHHHHCCCEEEE
Confidence 577899999999 99999999975 1 1 23999998863111 1110000 001235689999999998
Q ss_pred CCCCceeccCCCCch-hhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIGEGLWSNW-FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~-~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+ |.|..... ........|+.+.+++|.++
T Consensus 69 -~d~~--g~g~s~~~~~~~~~~~~d~~~~~~~l~~~ 101 (208)
T 3trd_A 69 -FNFR--GVGKSQGRYDNGVGEVEDLKAVLRWVEHH 101 (208)
T ss_dssp -ECCT--TSTTCCSCCCTTTHHHHHHHHHHHHHHHH
T ss_pred -EecC--CCCCCCCCccchHHHHHHHHHHHHHHHHh
Confidence 5553 33333211 23345688999999999987
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.012 Score=65.72 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=39.9
Q ss_pred cccceEEccC--CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
.+....|||+ |+.|+.... ...|.++|+.+++...+..... ....+..+.|+|+ +++++..
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~----------Dg~I~vwd~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSY----------DGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEET----------TSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEeC----------CCeEEEEECCCCcccccccccC--CCCCeEEEEECCCCCCCEEEEE
Confidence 5889999998 888777653 2467788888875322211111 1112678999998 7777764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.057 Score=52.20 Aligned_cols=112 Identities=8% Similarity=0.016 Sum_probs=62.8
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
..+..+.|+|+++ ++.... ...|.+||+.+++....... -...+..+.|+|++.
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~-------------dg~i~i~d~~~~~~~~~~~~------------~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSN-------------DGLIKLVDMHTGDVLRTYEG------------HESFVYCIKLLPNGD 238 (313)
T ss_dssp SCEEEEEEEETTE-EEEEET-------------TSEEEEEETTTCCEEEEEEC------------CSSCEEEEEECTTSC
T ss_pred ccEEEEEEcCCCe-EEEccC-------------CCeEEEEECCchhhhhhhhc------------CCceEEEEEEecCCC
Confidence 3567899999988 554432 23789999986644332110 011234589999984
Q ss_pred ceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
++- .. ....+.+++. ..+.....+......+..+.|+||+..++.. .++ .|.++++.+
T Consensus 239 --l~~--~~----------~dg~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~dg--~i~iw~~~~ 296 (313)
T 3odt_A 239 --IVS--CG----------EDRTVRIWSK--ENGSLKQVITLPAISIWSVDCMSNGDIIVGS---SDN--LVRIFSQEK 296 (313)
T ss_dssp --EEE--EE----------TTSEEEEECT--TTCCEEEEEECSSSCEEEEEECTTSCEEEEE---TTS--CEEEEESCG
T ss_pred --EEE--Ee----------cCCEEEEEEC--CCCceeEEEeccCceEEEEEEccCCCEEEEe---CCC--cEEEEeCCC
Confidence 221 11 1234666664 3331223333344567789999999844422 123 466667765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.06 Score=53.19 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=35.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||+ .||.... ...|.++|+.++....+...........+..+.|+|++++++..
T Consensus 16 ~v~~~~~s~~--~las~~~----------D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGST----------DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp CEEEEEEETT--EEEEEES----------SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred ceeeeccCCC--EEEEEcC----------CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 5778899988 4444332 24677778887542221100010011226789999998887765
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00079 Score=66.41 Aligned_cols=93 Identities=12% Similarity=0.185 Sum_probs=61.3
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhcc-CeEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAV 558 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~-GY~V 558 (607)
...+.+++++.|| +|.+++|.|.+.. + +.|+||++|+|-+. .++...| ....+.|+++ ||.|
T Consensus 46 ~~~~~~~i~~~~g-~l~~~~~~P~~~~--~--~~p~vv~~HGGg~~--------~g~~~~~----~~~~~~la~~~g~~v 108 (310)
T 2hm7_A 46 AEVREFDMDLPGR-TLKVRMYRPEGVE--P--PYPALVYYHGGSWV--------VGDLETH----DPVCRVLAKDGRAVV 108 (310)
T ss_dssp SEEEEEEEEETTE-EEEEEEEECTTCC--S--SEEEEEEECCSTTT--------SCCTTTT----HHHHHHHHHHHTSEE
T ss_pred ceEEEEEeccCCC-eEEEEEEecCCCC--C--CCCEEEEECCCccc--------cCChhHh----HHHHHHHHHhcCCEE
Confidence 3778899999888 9999999998742 2 34999998864211 1111111 1124678876 9999
Q ss_pred EeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 559 LAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 559 l~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
+. ++. +|.|.... .....|+.++++||.+..
T Consensus 109 ~~-~d~--rg~~~~~~----~~~~~d~~~~~~~l~~~~ 139 (310)
T 2hm7_A 109 FS-VDY--RLAPEHKF----PAAVEDAYDALQWIAERA 139 (310)
T ss_dssp EE-ECC--CCTTTSCT----THHHHHHHHHHHHHHHTT
T ss_pred EE-eCC--CCCCCCCC----CccHHHHHHHHHHHHhhH
Confidence 98 443 23333222 244788999999999874
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00025 Score=65.71 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=66.2
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+..+.+++++ ||.+|.++++.|.+ +. |+||++|+.. +....+. .....+.|+++||.|+
T Consensus 10 ~~~~~~~~~~-~g~~l~~~~~~p~~-----~~--p~vv~~hG~~-----------~~~~~~~--~~~~~~~l~~~G~~v~ 68 (223)
T 2o2g_A 10 PQEYAVSVSV-GEVKLKGNLVIPNG-----AT--GIVLFAHGSG-----------SSRYSPR--NRYVAEVLQQAGLATL 68 (223)
T ss_dssp CCEEEEEEEE-TTEEEEEEEECCTT-----CC--EEEEEECCTT-----------CCTTCHH--HHHHHHHHHHHTCEEE
T ss_pred ceeeEEEEec-CCeEEEEEEecCCC-----Cc--eEEEEecCCC-----------CCCCccc--hHHHHHHHHHCCCEEE
Confidence 3678889986 99999999999975 22 9999988530 1111110 0123578999999999
Q ss_pred eCCCCceeccCCC---Cc----hhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 560 AGPSIPIIGEGLW---SN----WFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g~g~~---~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. ++.+..| .. .. ..-......|+.+.+++|..+..+|.+++
T Consensus 69 ~-~d~~g~g--~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i 116 (223)
T 2o2g_A 69 L-IDLLTQE--EEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKV 116 (223)
T ss_dssp E-ECSSCHH--HHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEE
T ss_pred E-EcCCCcC--CCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcE
Confidence 8 5554332 21 11 12336668899999999999877776553
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.026 Score=60.08 Aligned_cols=114 Identities=7% Similarity=0.048 Sum_probs=62.8
Q ss_pred ceeee--eeCCCC-ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE-EeccCCCCCCCCccccccc-CCCCcceee
Q 007338 176 VYTAV--EPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVR-EGMRSISWR 250 (607)
Q Consensus 176 ~~~~~--~~SpDg-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~-~~~~~~~ws 250 (607)
.+..+ .++|+| +.|+-.+.+ ..+.+||+.+++.. .+..- .. ..+..++||
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D-------------~tvklWD~~~~~~~~~~~~~------------~~~~~v~~v~fs 364 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVD-------------GYFYIFNPKDIATTKTTVSR------------FRGSNLVPVVYC 364 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETT-------------SEEEEECGGGHHHHCEEEEE------------CSCCSCCCEEEE
T ss_pred cEEEEEEEcCCCCCeEEEEeccC-------------CeEEEEECCCCCcccccccc------------cccCcccceEeC
Confidence 45555 678998 555544432 36889998765321 11110 00 123568999
Q ss_pred cCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEc
Q 007338 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (607)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~d 330 (607)
|+++. ++... . .+.+.+++. ..+.....+......+..++|||+|..|+... .++ .+.+.|
T Consensus 365 p~~~~---l~s~~--~--------d~tv~lwd~--~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs--~Dg--tv~lwd 425 (524)
T 2j04_B 365 PQIYS---YIYSD--G--------ASSLRAVPS--RAAFAVHPLVSRETTITAIGVSRLHPMVLAGS--ADG--SLIITN 425 (524)
T ss_dssp TTTTE---EEEEC--S--------SSEEEEEET--TCTTCCEEEEECSSCEEEEECCSSCCBCEEEE--TTT--EEECCB
T ss_pred CCcCe---EEEeC--C--------CCcEEEEEC--cccccceeeecCCCceEEEEeCCCCCeEEEEE--CCC--EEEEEe
Confidence 99983 22211 1 123555553 23323345555666788999999998776643 223 344446
Q ss_pred CCC
Q 007338 331 PGS 333 (607)
Q Consensus 331 l~~ 333 (607)
+..
T Consensus 426 ~~~ 428 (524)
T 2j04_B 426 AAR 428 (524)
T ss_dssp SCS
T ss_pred chH
Confidence 544
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0006 Score=66.02 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=47.5
Q ss_pred ceEEEEEEC-CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s-~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.+ .+|.++..++|+|+++++++++ |+||+.|+.. +....|... ....++++++||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~--P~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv 79 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGASESNKV--PVLYWLSGLT-----------CTDENFMQK-AGAFKKAAELGIAIV 79 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCBTTBCE--EEEEEECCTT-----------CCSHHHHHH-SCCHHHHHHHTCEEE
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCCCCCCc--CEEEEeCCCC-----------CChhhhhcc-hhHHHHHhhCCeEEE
Confidence 456677766 4889999999999999866655 9999998641 001111110 112468888999999
Q ss_pred eCCCCc
Q 007338 560 AGPSIP 565 (607)
Q Consensus 560 ~~~~~~ 565 (607)
. ++.+
T Consensus 80 ~-~d~~ 84 (280)
T 3ls2_A 80 A-PDTS 84 (280)
T ss_dssp E-CCSS
T ss_pred E-eCCc
Confidence 8 5543
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00036 Score=67.63 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=47.0
Q ss_pred ceEEEEEEC-CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s-~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.+ .+|.++..++|.|+++++++++ |+||++|+.. +....|... ....++++.+||+|+
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~--p~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv 81 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQASTGAKV--PVLYWLSGLT-----------CSDENFMQK-AGAQRLAAELGIAIV 81 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGTTCCE--EEEEEECCTT-----------CCSSHHHHH-SCCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCCCCCCc--cEEEEecCCC-----------CChhHHhhc-ccHHHHHhhCCeEEE
Confidence 456677765 4889999999999998766655 9999988641 111111111 112468888999999
Q ss_pred eCCCCc
Q 007338 560 AGPSIP 565 (607)
Q Consensus 560 ~~~~~~ 565 (607)
. ++.+
T Consensus 82 ~-pd~~ 86 (280)
T 3i6y_A 82 A-PDTS 86 (280)
T ss_dssp E-ECSS
T ss_pred E-eCCc
Confidence 8 5443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.019 Score=59.14 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=37.0
Q ss_pred EccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 38 ~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
++|||+.|+.... ...|.++|+.+++........ .....+..+.|+|++++++..
T Consensus 178 ~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~ 232 (437)
T 3gre_A 178 VNEEKSLLVALTN----------LSRVIIFDIRTLERLQIIENS--PRHGAVSSICIDEECCVLILG 232 (437)
T ss_dssp ECSSCEEEEEEET----------TSEEEEEETTTCCEEEEEECC--GGGCCEEEEEECTTSCEEEEE
T ss_pred EcCCCCEEEEEeC----------CCeEEEEeCCCCeeeEEEccC--CCCCceEEEEECCCCCEEEEE
Confidence 6788988776653 358899999988764433221 011126789999998887764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.047 Score=55.57 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=23.5
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
..+..++|+|++..++++... ...|.+||+.+++.
T Consensus 187 ~~v~~v~~~p~~~~~l~~~~~------------d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 187 SPGISVQFRPSNPNQLIVGER------------NGNIRIFDWTLNLS 221 (393)
T ss_dssp SCEEEEEEETTEEEEEEEEET------------TSEEEEEETTCCC-
T ss_pred CCcEEEEECCCCCceEEecCC------------CCEEEEEECCCCcc
Confidence 345689999998765555432 23688899886643
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.001 Score=74.17 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=31.2
Q ss_pred hHHHhccCeEEEeCCCCceeccCCC--CchhhHHHHhhcHHHHHHHHHH
Q 007338 548 SLIFLARRFAVLAGPSIPIIGEGLW--SNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g~g~~--~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
.++||++||+|+. .+. +|.|.. ....+..+...|+.++|+||..
T Consensus 274 ~~~la~~GYaVv~-~D~--RG~G~S~G~~~~~~~~e~~D~~a~IdwL~~ 319 (763)
T 1lns_A 274 NDYFLTRGFASIY-VAG--VGTRSSDGFQTSGDYQQIYSMTAVIDWLNG 319 (763)
T ss_dssp HHHHHTTTCEEEE-ECC--TTSTTSCSCCCTTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEE-ECC--CcCCCCCCcCCCCCHHHHHHHHHHHHHHhh
Confidence 4899999999998 544 343332 1123445678999999999985
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.15 Score=50.74 Aligned_cols=145 Identities=10% Similarity=0.011 Sum_probs=76.7
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC-cc-ccccccceEEe
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-IC-LNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~-~~-~~~~~~~~~Ws 95 (607)
.|+.+.+..+. .......++|||+.+ +...+.. .+...|+.++ +|+...+..... .+ .-..+..+.++
T Consensus 6 ~g~~~~v~~~~--~~p~~va~~~~g~~~-v~~~~~~-----~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d 75 (343)
T 2qe8_A 6 GDRLEVVAELS--LAPGNITLTPDGRLF-LSLHQFY-----QPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSD 75 (343)
T ss_dssp --CCEEEEEES--SCEEEEEECTTSCEE-EEECGGG-----CCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEEC
T ss_pred CceeEEEEEcC--CCcceEEECCCCCEE-EEeCCCC-----CCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEc
Confidence 35666776554 357889999999753 3322210 1225789888 566554421110 00 00113467788
Q ss_pred cCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC
Q 007338 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT 173 (607)
Q Consensus 96 pd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~ 173 (607)
+++++++.-. +. .. ....+|+++|+ +|+ .+.+..
T Consensus 76 ~~g~L~v~D~------------------------g~----~~----------------~~~~~i~~~d~~tg~~~~~~~~ 111 (343)
T 2qe8_A 76 GNGIVWMLDN------------------------GN----QS----------------KSVPKLVAWDTLNNQLSRVIYL 111 (343)
T ss_dssp SSSEEEEEEC------------------------HH----HH----------------TSCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEcC------------------------CC----Cc----------------CCCCeEEEEECCCCeEEEEEEC
Confidence 8888666421 00 00 01246777777 464 332221
Q ss_pred ------C-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec
Q 007338 174 ------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (607)
Q Consensus 174 ------~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (607)
. .....+.++|++..++++..... ....|+++|+.+++...+.
T Consensus 112 ~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---------~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 112 PPPITLSNSFVNDLAVDLIHNFVYISDPAPD---------DKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp CTTTSCTTCCCCEEEEETTTTEEEEEECCSG---------GGCEEEEEETTTCCEEEEC
T ss_pred ChhhcccccccceEEEecCCCEEEEEcCccC---------CCCeEEEEECCCCCEEEEe
Confidence 1 13357889988777776632100 0237899999877666543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.26 Score=49.22 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=33.3
Q ss_pred eeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 303 SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 303 ~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+++.|++..+++..+.. ..+|+++++++. ..+.+...... .|.. +.++++++.||+...
T Consensus 163 ~iavdp~~g~ly~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~----~PnG--la~d~~~~~lY~aD~ 222 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGN--TPRIEASSMDGS--GRRIIADTHLF----WPNG--LTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEEETTTTEEEEEECSS--SCEEEEEETTSC--SCEESCCSSCS----CEEE--EEEETTTTEEEEEET
T ss_pred eEEEecCcCeEEEeccCC--CCEEEEEeCCCC--CcEEEEECCCC----Ccce--EEEeCCCCEEEEEEC
Confidence 456666544433333221 258999999883 34444321111 1111 778888888888764
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0004 Score=67.21 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=43.9
Q ss_pred ceEEEEEEC-CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s-~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.+ .+|.++...+|+|+++++ + +.|+||++|++.. ....+... ....++++++||+|+
T Consensus 15 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~--~~p~vv~lHG~~~-----------~~~~~~~~-~~~~~~~~~~g~~vv 79 (282)
T 3fcx_A 15 LQKVFEHDSVELNCKMKFAVYLPPKAET-G--KCPALYWLSGLTC-----------TEQNFISK-SGYHQSASEHGLVVI 79 (282)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGT-S--CEEEEEEECCTTC-----------CSHHHHHH-SCCHHHHHHHTCEEE
T ss_pred cEEEEEEEchhcCCeeEEEEEcCCCCCC-C--CCCEEEEEcCCCC-----------Cccchhhc-chHHHHhhcCCeEEE
Confidence 344555554 488999999999998764 3 3499999886410 01111100 112478899999999
Q ss_pred eCCCC
Q 007338 560 AGPSI 564 (607)
Q Consensus 560 ~~~~~ 564 (607)
. ++.
T Consensus 80 ~-~d~ 83 (282)
T 3fcx_A 80 A-PDT 83 (282)
T ss_dssp E-ECS
T ss_pred E-ecc
Confidence 8 554
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00099 Score=63.64 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=60.3
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCC----CCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYD----QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~----~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G 555 (607)
..+.++|.+. +|.++.++||+|++++ +++ +.|+||++|+.. +....|... .....+++..|
T Consensus 6 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~--~~p~vv~~HG~~-----------~~~~~~~~~-~~~~~~~~~~~ 71 (263)
T 2uz0_A 6 AVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECE--DIPVLYLLHGMS-----------GNHNSWLKR-TNVERLLRGTN 71 (263)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECC---------C--CBCEEEEECCTT-----------CCTTHHHHH-SCHHHHTTTCC
T ss_pred eEeEEEEechhhCCceeEEEEeCCCccccCCcCC--CCCEEEEECCCC-----------CCHHHHHhc-cCHHHHHhcCC
Confidence 4566777755 6889999999999873 234 349999988641 111112110 01123555689
Q ss_pred eEEEeCCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 556 FAVLAGPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 556 Y~Vl~~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
|+|+. ++.+..++... ....+...+.+++...++++..+-.+|.+++
T Consensus 72 ~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 119 (263)
T 2uz0_A 72 LIVVM-PNTSNGWYTDTQYGFDYYTALAEELPQVLKRFFPNMTSKREKT 119 (263)
T ss_dssp CEEEE-CCCTTSTTSBCTTSCBHHHHHHTHHHHHHHHHCTTBCCCGGGE
T ss_pred eEEEE-ECCCCCccccCCCcccHHHHHHHHHHHHHHHHhccccCCCCce
Confidence 99997 65432222111 2334556777777777777655334455543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.012 Score=62.54 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=92.5
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEE-c-cCCCEEEEEeecCc----ccc-----cCCCceeEEEEECCCCcee
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSW-S-PDGKRIAFSVRVDE----EDN-----VSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~-S-PDG~~laf~~~~~~----~~~-----~~~~~~~L~v~d~~~g~~~ 75 (607)
|..-||+ +.+...+..+|.+.......+ + |||++++.. .+.. .++ +......+-++|.++++..
T Consensus 114 VavIdl~----t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~-~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~ 188 (595)
T 1fwx_A 114 VARVRCD----VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCN-GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA 188 (595)
T ss_dssp EEEEETT----TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEE-ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE
T ss_pred EEEEECC----CceEeeEEeCCCCCCCcceeeeecCCCcEEEEe-cccccccCCCCcccccccccCceEEEEECCCCeEE
Confidence 4444554 455555556776656777777 6 999998444 3210 000 1145578999999998763
Q ss_pred -ecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeee
Q 007338 76 -PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (607)
Q Consensus 76 -~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 154 (607)
++- ... ....+..+||++++|.+........... ........... ....+.....++ ++. +.+
T Consensus 189 ~qI~-Vgg-----~pd~~~~spdGk~~~vt~~~se~~~~i~--~~~~~~~d~v~---V~~~~~~~~~v~---~Gk-~~~- 252 (595)
T 1fwx_A 189 WQVL-VSG-----NLDNCDADYEGKWAFSTSYNSEKGMTLP--EMTAAEMDHIV---VFNIAEIEKAIA---AGD-YQE- 252 (595)
T ss_dssp EEEE-ESS-----CCCCEEECSSSSEEEEEESCTTCCSSHH--HHTCCSEEEEE---EEEHHHHHHHHH---HTC-SEE-
T ss_pred EEEE-eCC-----CccceEECCCCCEEEEEecCcccCcchh--hccccccceEE---EeeccceeEecc---CCC-eeE-
Confidence 332 111 1567788999999888754322111000 00000000000 000000000011 111 111
Q ss_pred ccceEEEEeC-C--CC--eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 155 TTAQLVLGSL-D--GT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 155 ~~~~l~~~~~-~--g~--~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
...+.++|. + ++ ...+..+..-..+.+||||++++++... ...+.++|+++.
T Consensus 253 -i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------------s~~VsVid~~~~ 309 (595)
T 1fwx_A 253 -LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------------SPTVTVLDVTRF 309 (595)
T ss_dssp -ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------------SSBEEEEEGGGH
T ss_pred -ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------------CCeEEEEECccc
Confidence 145888888 4 42 2334333344678999999999988532 236888888754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0079 Score=60.47 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=24.6
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..+..++|||||++|+..+.+ ..+.+||+..+
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d-------------~~v~iw~~~~~ 272 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDK-------------WTLHVFEIFND 272 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETT-------------CEEEEEESSCC
T ss_pred CcEEEEEECCCCCEEEEEECC-------------CEEEEEEccCC
Confidence 456789999999999887642 36888888654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.068 Score=54.74 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=37.1
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccccccc-ceEEecCCeEEEEE
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFG-SFVWVNNSTLLIFT 104 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~-~~~Wspd~~~l~~~ 104 (607)
.....+||| |+.+... ...+ ++...|.++|.++++...-...... ...+. .+.|+|++++++.+
T Consensus 141 h~~~~~pdG--i~Vs~~g-~~~g--~~~g~v~vlD~~T~~v~~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS 205 (462)
T 2ece_A 141 HTVHCGPDA--IYISALG-NEEG--EGPGGILMLDHYSFEPLGKWEIDRG--DQYLAYDFWWNLPNEVLVSS 205 (462)
T ss_dssp EEEEECSSC--EEEEEEE-ETTS--CSCCEEEEECTTTCCEEEECCSBCT--TCCCCCCEEEETTTTEEEEC
T ss_pred cceeECCCe--EEEEcCC-CcCC--CCCCeEEEEECCCCeEEEEEccCCC--CccccceEEECCCCCEEEEc
Confidence 334789999 3333322 1112 4567899999999986533211111 11122 57889998876664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.032 Score=54.84 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=36.7
Q ss_pred cccceEEcc--CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
.+....|+| +|+.||-.+. + ..|.++|+.+++...+..... ....+..+.|+|+ +.+++..
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~--------D--~~v~iWd~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSY--------D--RKVIIWREENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEET--------T--SCEEEECCSSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEE
T ss_pred cEEEEEeCCCCCCCEEEEEEC--------C--CEEEEEECCCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEE
Confidence 588899987 4887765542 2 467777988775322211110 1112668999987 5666653
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0021 Score=63.86 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=60.5
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 558 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~V 558 (607)
...+.+++.+.+| +|.+++|.|.+ . + +.|+||++|++-| +.++...| ......|+. .||.|
T Consensus 63 ~~~~~~~i~~~~~-~i~~~iy~P~~-~--~--~~p~vv~~HGGg~--------~~g~~~~~----~~~~~~La~~~g~~V 124 (323)
T 3ain_A 63 GKIEDITIPGSET-NIKARVYYPKT-Q--G--PYGVLVYYHGGGF--------VLGDIESY----DPLCRAITNSCQCVT 124 (323)
T ss_dssp SEEEEEEEECSSS-EEEEEEEECSS-C--S--CCCEEEEECCSTT--------TSCCTTTT----HHHHHHHHHHHTSEE
T ss_pred cEEEEEEecCCCC-eEEEEEEecCC-C--C--CCcEEEEECCCcc--------ccCChHHH----HHHHHHHHHhcCCEE
Confidence 4788899998888 99999999986 2 2 3499999986411 11111111 112457776 49999
Q ss_pred EeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 559 LAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 559 l~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
+. ++. +|.|.... .....|+.++++||.+..
T Consensus 125 v~-~Dy--rg~~~~~~----p~~~~d~~~~~~~l~~~~ 155 (323)
T 3ain_A 125 IS-VDY--RLAPENKF----PAAVVDSFDALKWVYNNS 155 (323)
T ss_dssp EE-ECC--CCTTTSCT----THHHHHHHHHHHHHHHTG
T ss_pred EE-ecC--CCCCCCCC----cchHHHHHHHHHHHHHhH
Confidence 98 443 33443321 245789999999999874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.26 Score=48.33 Aligned_cols=140 Identities=9% Similarity=0.042 Sum_probs=76.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC----CceeecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~----g~~~~lt~~~ 81 (607)
.|...++. +++...+. +.......+.|+++++.|+++-. ....|+++++++ .....+....
T Consensus 11 ~I~~i~~~----~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~---------~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 11 EVRKMTLD----RSEYTSLI--PNLRNVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SEEEEETT----SCCCEEEE--CSCSSEEEEEEETTTTEEEEEET---------TTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECC----CcceEehh--cCCCceEEEEEEeCCCEEEEEEC---------CCCcEEEEECCCCCCCcccEEEEeCC
Confidence 45556665 44444443 23335788999999999877642 346899999987 2333332111
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
+. ....+++.+.++.+|++.. ....|.+
T Consensus 76 ---~~-~p~glavd~~~~~ly~~d~------------------------------------------------~~~~I~~ 103 (316)
T 1ijq_A 76 ---IQ-APDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSV 103 (316)
T ss_dssp ---CS-CCCEEEEETTTTEEEEEET------------------------------------------------TTTEEEE
T ss_pred ---CC-CcCEEEEeecCCeEEEEEC------------------------------------------------CCCEEEE
Confidence 00 1346666655444444310 1235556
Q ss_pred EeCCCC-eeecCC--CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 162 GSLDGT-AKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 162 ~~~~g~-~~~lt~--~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
++++|. .+.+.. ......++++|++.+|+++.... ...|+++++++...+.
T Consensus 104 ~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----------~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYS 157 (316)
T ss_dssp EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEE
T ss_pred EeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----------CCeEEEEcCCCCCeEE
Confidence 666553 333321 12335788999888888874321 1368888877654433
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0015 Score=61.97 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred ceE--EEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCC-CchhHHHhccCeE
Q 007338 481 QKE--MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFA 557 (607)
Q Consensus 481 ~~e--~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~-~~~~q~la~~GY~ 557 (607)
..| .+.+++.|| +|.++++.|.+ ++. |+||++|+.... ++ .+.... ....+.|+++||.
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~----~~~--p~vv~~HG~~~~---------~~--~~~~~~~~~~~~~l~~~G~~ 81 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE----KSA--PIAIILHPHPQF---------GG--TMNNQIVYQLFYLFQKRGFT 81 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS----TTC--CEEEEECCCGGG---------TC--CTTSHHHHHHHHHHHHTTCE
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC----CCC--CEEEEECCCccc---------CC--CccchHHHHHHHHHHHCCCE
Confidence 556 999999999 99999998864 223 889988752100 00 111000 1235789999999
Q ss_pred EEeCCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHHhccccc
Q 007338 558 VLAGPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAELLLE 600 (607)
Q Consensus 558 Vl~~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 600 (607)
|+. ++.+. .|.. ...........|+.+.+++|.+++. |.
T Consensus 82 v~~-~d~~g--~G~s~~~~~~~~~~~~d~~~~i~~l~~~~~-~~ 121 (249)
T 2i3d_A 82 TLR-FNFRS--IGRSQGEFDHGAGELSDAASALDWVQSLHP-DS 121 (249)
T ss_dssp EEE-ECCTT--STTCCSCCCSSHHHHHHHHHHHHHHHHHCT-TC
T ss_pred EEE-ECCCC--CCCCCCCCCCccchHHHHHHHHHHHHHhCC-CC
Confidence 998 55543 3332 1111112334999999999998865 44
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.11 Score=51.25 Aligned_cols=121 Identities=12% Similarity=0.161 Sum_probs=60.6
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
...++++||+..|+++... ...|.+++.+++ ..+.+.... ....+..+.++| |
T Consensus 198 p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~~~~~-----------~~~~~~~~~~~p-g-- 251 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREIKHAS-----------FGRNVFAISYIP-G-- 251 (329)
T ss_dssp EEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEECCTT-----------TTTCEEEEEEET-T--
T ss_pred CcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEEeccc-----------cCCCcceeeecC-C--
Confidence 3578999997778777432 237899999844 444442210 011223467777 2
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee---ecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCC
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~---~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~ 332 (607)
+++.. ++... +.......+++++. .+|.....+. ........++++|||..++.+. ...+|++++++
T Consensus 252 -~~~~~--~g~~~-v~~~~~~~v~~~~~--~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~----~~~~I~~~~~~ 321 (329)
T 3fvz_A 252 -FLFAV--NGKPY-FGDQEPVQGFVMNF--SSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA----HTNTVWKFTLT 321 (329)
T ss_dssp -EEEEE--ECCCC-TTCSCCCCEEEEET--TTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES----SSCCEEEEEEE
T ss_pred -EEEEe--CCCEE-eccCCCcEEEEEEc--CCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC----CCCEEEEEeCC
Confidence 22221 11111 11112234555552 2331111121 1112345788999996556553 23477777776
Q ss_pred C
Q 007338 333 S 333 (607)
Q Consensus 333 ~ 333 (607)
+
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.015 Score=59.25 Aligned_cols=58 Identities=12% Similarity=-0.058 Sum_probs=38.3
Q ss_pred cccceEEcc--------CCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCe-EE
Q 007338 32 KINFVSWSP--------DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNST-LL 101 (607)
Q Consensus 32 ~~~~~~~SP--------DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~-~l 101 (607)
.+....||| ||+.||-.+. + ..|.++|+.++.. ..+..+.. .+..+.|+|++. ++
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~--------D--~tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l 202 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGD--------D--CTLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQL 202 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEET--------T--SEEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEE
T ss_pred ceEEEEEccccccccCCCCCEEEEEEC--------C--CeEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceE
Confidence 588899998 8988877653 2 4677778876654 33333222 256889999864 55
Q ss_pred EEE
Q 007338 102 IFT 104 (607)
Q Consensus 102 ~~~ 104 (607)
+..
T Consensus 203 ~~~ 205 (393)
T 4gq1_A 203 IVG 205 (393)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00031 Score=65.90 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=61.3
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+.+++++.||.+|+++++.|.+ + +.|+||++|+.. +....+ ....+.|+++||.|+. +
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~----~--~~p~vv~~hG~~-----------~~~~~~----~~~~~~l~~~g~~v~~-~ 61 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK----A--PAPVIVIAQDIF-----------GVNAFM----RETVSWLVDQGYAAVC-P 61 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS----C--SEEEEEEECCTT-----------BSCHHH----HHHHHHHHHTTCEEEE-E
T ss_pred ceEEEecCCCCeEEEEEECCCC----C--CCCEEEEEcCCC-----------CCCHHH----HHHHHHHHhCCcEEEe-c
Confidence 4567888999999999999974 2 239999988530 111111 1235788999999998 6
Q ss_pred CCceec-cCCCCc---------------hhhHHHHhhcHHHHHHHHHHhcccc
Q 007338 563 SIPIIG-EGLWSN---------------WFQVQRLLLKKLFDVEWLIQAELLL 599 (607)
Q Consensus 563 ~~~~~g-~g~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~ 599 (607)
+.+..| .+.... .........|+.+++++|.++..++
T Consensus 62 d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 114 (236)
T 1zi8_A 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN 114 (236)
T ss_dssp CGGGGTSTTCBCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE
T ss_pred cccccCCCcccccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC
Confidence 554333 121111 1112456789999999998876544
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0044 Score=59.49 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=33.0
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccC
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~ 522 (607)
..+.++|.+. +|.++..++|+|+++++++++ |+||++|++
T Consensus 31 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~--P~vv~lHG~ 71 (268)
T 1jjf_A 31 QVVNISYFSTATNSTRPARVYLPPGYSKDKKY--SVLYLLHGI 71 (268)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCB--CEEEEECCT
T ss_pred eEEEEEEeccccCCceEEEEEeCCCCCCCCCc--cEEEEECCC
Confidence 6778888765 688999999999998776655 999999864
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.13 Score=49.01 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=27.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
......|+||| + +|.++.. .+...|.++|+++|+..+-.
T Consensus 22 f~~Gl~~~~dg-~-Lyvstg~------~~~s~v~~iD~~tg~v~~~i 60 (266)
T 2iwa_A 22 FTQGLVYAEND-T-LFESTGL------YGRSSVRQVALQTGKVENIH 60 (266)
T ss_dssp CEEEEEECSTT-E-EEEEECS------TTTCEEEEEETTTCCEEEEE
T ss_pred CcccEEEeCCC-e-EEEECCC------CCCCEEEEEECCCCCEEEEE
Confidence 35789999996 5 4554421 34689999999999876543
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=64.14 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=58.8
Q ss_pred eEEEEEECCCCceEEEEEEcCCC---CCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEE
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPG---YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~---~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~V 558 (607)
.+.+++ ..+|.++...+|.|.+ +.+.+ +.|+||++|++-+. .+....+ ....+.|+++||.|
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~--~~p~vv~~HGgg~~--------~~~~~~~----~~~~~~l~~~G~~v 68 (277)
T 3bxp_A 4 VEQRTL-NTAAHPFQITAYWLDQISDFETAV--DYPIMIICPGGGFT--------YHSGREE----APIATRMMAAGMHT 68 (277)
T ss_dssp EEEEEE-CSTTCCEEEEEEEECCCCSSSCCC--CEEEEEEECCSTTT--------SCCCTTH----HHHHHHHHHTTCEE
T ss_pred eEEEEe-ccCCCcceEEEEeCCcccccccCC--CccEEEEECCCccc--------cCCCccc----hHHHHHHHHCCCEE
Confidence 456677 4688899999999983 23333 34999998864111 0111111 11256889999999
Q ss_pred EeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 559 LAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 559 l~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
+. ++. +|.|..+. .+ .....|+.++++||.+.-
T Consensus 69 ~~-~d~--~g~g~~~~-~~-~~~~~d~~~~~~~l~~~~ 101 (277)
T 3bxp_A 69 VV-LNY--QLIVGDQS-VY-PWALQQLGATIDWITTQA 101 (277)
T ss_dssp EE-EEC--CCSTTTCC-CT-THHHHHHHHHHHHHHHHH
T ss_pred EE-Eec--ccCCCCCc-cC-chHHHHHHHHHHHHHhhh
Confidence 98 443 23232222 22 355778999999998873
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.037 Score=55.80 Aligned_cols=70 Identities=16% Similarity=0.012 Sum_probs=41.1
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC-cc--ccccccceEEecCCeEEEEE
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-IC--LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~-~~--~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+.+||||++|+......+.....+....|.++|+++++...-..... .. .......+.+|||++.+|..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 799999999976654210000000124789999999998643322220 00 00114578999998877765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.24 Score=46.68 Aligned_cols=57 Identities=9% Similarity=-0.064 Sum_probs=35.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
......++|||+ |++ .. . ...|+++|..++....+..... .....+.+++++++++.
T Consensus 68 ~p~~i~~~~~g~-l~v-~~--------~-~~~i~~~d~~~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~ 124 (270)
T 1rwi_B 68 QPQGLAVDGAGT-VYV-TD--------F-NNRVVTLAAGSNNQTVLPFDGL----NYPEGLAVDTQGAVYVA 124 (270)
T ss_dssp SCCCEEECTTCC-EEE-EE--------T-TTEEEEECTTCSCCEECCCCSC----SSEEEEEECTTCCEEEE
T ss_pred CcceeEECCCCC-EEE-Ec--------C-CCEEEEEeCCCceEeeeecCCc----CCCcceEECCCCCEEEE
Confidence 567889999998 444 33 2 3579999998776554421110 11446777888876554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.4 Score=48.57 Aligned_cols=169 Identities=12% Similarity=0.095 Sum_probs=94.5
Q ss_pred ccceEEEEeCCC-CeeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCC
Q 007338 155 TTAQLVLGSLDG-TAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (607)
Q Consensus 155 ~~~~l~~~~~~g-~~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (607)
....|+++++.+ +...+.. ......++|++.+..|+++... ...|++++++++....+....
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~---- 157 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTG---- 157 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCCEEEEECSS----
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------------CCcEEEEecCCCCcEEEEeCC----
Confidence 346788899855 5554432 3345688999988888887432 247999999988766654311
Q ss_pred CCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcCCCc
Q 007338 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSL 311 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~Dg~ 311 (607)
...+..+++.+.+. .|||... . .+.+.+.+ .+|...+.+.... .....+++.|++.
T Consensus 158 --------~~~p~glavd~~~g-~lY~~d~---~--------~~~I~~~~---~dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 158 --------LESPGGLAVDWVHD-KLYWTDS---G--------TSRIEVAN---LDGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp --------CSCCCCEEEETTTT-EEEEEET---T--------TTEEEECB---TTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred --------CCCccEEEEEeCCC-eEEEEcC---C--------CCeEEEEe---CCCCceEEeecCCCCCCcEEEEEcCCC
Confidence 01233466665544 3555432 1 12344433 2332333333222 2345678887665
Q ss_pred EEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+++..+.. ..+|+++++++. ..+.+...... .|.. +.++++++.||+...
T Consensus 215 ~ly~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~----~PnG--lavd~~~~~lY~aD~ 265 (386)
T 3v65_B 215 TIYWTDWGN--TPRIEASSMDGS--GRRIIADTHLF----WPNG--LTIDYAGRRMYWVDA 265 (386)
T ss_dssp EEEEEECSS--SCEEEEEETTSC--SCEEEECSSCS----CEEE--EEEEGGGTEEEEEET
T ss_pred eEEEeccCC--CCEEEEEeCCCC--CcEEEEECCCC----Ceee--EEEeCCCCEEEEEEC
Confidence 444433321 258999999983 34444322111 1111 778888888888764
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00058 Score=67.24 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=63.1
Q ss_pred ceEEEEEE---CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeE
Q 007338 481 QKEMIKYQ---RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (607)
Q Consensus 481 ~~e~i~~~---s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~ 557 (607)
....++|+ +.+|.++++++|.|.+.++ +.|+||++|+.. +....|. ....+.++++||.
T Consensus 23 g~~~~~~~~~~~~~~~~l~~~~~~P~~~~~----~~p~vv~lHG~~-----------~~~~~~~---~~~~~~l~~~g~~ 84 (304)
T 3d0k_A 23 GRNAIPYLDDDRNADRPFTLNTYRPYGYTP----DRPVVVVQHGVL-----------RNGADYR---DFWIPAADRHKLL 84 (304)
T ss_dssp EEEEEEECC---CTTCCEEEEEEECTTCCT----TSCEEEEECCTT-----------CCHHHHH---HHTHHHHHHHTCE
T ss_pred CCceEEecccCCCCCceEEEEEEeCCCCCC----CCcEEEEeCCCC-----------CCHHHHH---HHHHHHHHHCCcE
Confidence 34457777 7899999999999987653 239999988541 0001110 1125688899999
Q ss_pred EEeCCCCcee----------cc--CCCCch-hhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 558 VLAGPSIPII----------GE--GLWSNW-FQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 558 Vl~~~~~~~~----------g~--g~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
|+. ++.+.. |. |...+. .+......++.+.+++|.++..+|.+++
T Consensus 85 v~~-~d~~~~~~p~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 142 (304)
T 3d0k_A 85 IVA-PTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQV 142 (304)
T ss_dssp EEE-EECCTTTSCHHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSE
T ss_pred EEE-eCCccccCCCccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcE
Confidence 998 444311 11 221111 1112234678899999998866677654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.27 Score=47.17 Aligned_cols=79 Identities=13% Similarity=-0.020 Sum_probs=46.7
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~ 83 (607)
..|++.+.+ +|+...-.............++|||+.|+ .. ...|+.+|+ +|+. .++.. ...
T Consensus 15 ~~v~~~d~~----tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~-----------~~~V~~~d~-~G~~~W~~~~-~~~ 76 (276)
T 3no2_A 15 NKIAIINKD----TKEIVWEYPLEKGWECNSVAATKAGEILF-SY-----------SKGAKMITR-DGRELWNIAA-PAG 76 (276)
T ss_dssp SEEEEEETT----TTEEEEEEECCTTCCCCEEEECTTSCEEE-EC-----------BSEEEEECT-TSCEEEEEEC-CTT
T ss_pred CEEEEEECC----CCeEEEEeCCCccCCCcCeEECCCCCEEE-eC-----------CCCEEEECC-CCCEEEEEcC-CCC
Confidence 356777765 55443332222212578889999998665 22 246889999 5654 34432 111
Q ss_pred cccccccceEEecCCeEEEEE
Q 007338 84 CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+....+++|+++++..
T Consensus 77 ---~~~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 77 ---CEMQTARILPDGNALVAW 94 (276)
T ss_dssp ---CEEEEEEECTTSCEEEEE
T ss_pred ---ccccccEECCCCCEEEEe
Confidence 014467788998887763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.92 E-value=0.45 Score=48.47 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=24.8
Q ss_pred eeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..|.++++++++...+..... ....+.|.+.+..||++
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~-----~~~~l~~d~~~~~lyws 129 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWS 129 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCS-----CEEEEEEETTTTEEEEE
T ss_pred ceeEEEccCCcceeEeccccC-----cceEEeeeeccCceEEE
Confidence 689999999877665542211 14578899875555554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.92 E-value=0.45 Score=48.46 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=65.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC----ceeecccCCCccccccccceEEecCCeEEEEEecC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~ 107 (607)
......|++.++.|+|+-. ....|+++++.+. ....+....-. ....++..+.++.||++..
T Consensus 113 ~~~~l~~d~~~~~lywsD~---------~~~~I~~~~~~g~~~~~~~~~~~~~~~~----~p~glavD~~~~~lY~~d~- 178 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRDIQ----APDGLAVDWIHSNIYWTDS- 178 (400)
T ss_dssp CEEEEEEETTTTEEEEEET---------TTTEEEEEEC------CCCEEEECSSCS----CEEEEEEETTTTEEEEEET-
T ss_pred cceEEeeeeccCceEEEec---------CCCeEEEEEcccCCCCCcceEEEeCCCC----CcccEEEEecCCceEEEEC-
Confidence 5678889998888877642 2467888888762 23333211100 1234555554443444310
Q ss_pred CCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCCC--CceeeeeeCC
Q 007338 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSP 184 (607)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~~--~~~~~~~~Sp 184 (607)
...+|.+++++|. .+.+... .....+++.|
T Consensus 179 -----------------------------------------------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 179 -----------------------------------------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp -----------------------------------------------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred -----------------------------------------------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 1235666677553 3333221 2235788999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
.+.+|+++.... ...|+++++++...+.
T Consensus 212 ~~g~ly~td~~~-----------~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 212 VHGFMYWTDWGT-----------PAKIKKGGLNGVDIYS 239 (400)
T ss_dssp TTTEEEEEECSS-----------SCCEEEEETTSCSCEE
T ss_pred ccCeEEEEeCCC-----------CCEEEEEeCCCCccEE
Confidence 888888875321 1368888887764443
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0011 Score=66.24 Aligned_cols=134 Identities=7% Similarity=-0.035 Sum_probs=69.1
Q ss_pred EEEEEeecccccceEEEEecCCCceeeEec-CCCC-CCcc---cCCceEEEEEECCCCceEEEEEEcCCCC-CCCCCCCC
Q 007338 440 KILTSKESKTEITQYHILSWPLKKSSQITN-FPHP-YPTL---ASLQKEMIKYQRKDGVPLTATLYLPPGY-DQSKDGPL 513 (607)
Q Consensus 440 ~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~-~~~~-~~~~---~~~~~e~i~~~s~DG~~i~g~l~~P~~~-~~~k~y~l 513 (607)
.++|...+...+...+++.. +|+..++.. ...+ .... .....+.+.+.+ |..+.+.+|+|++. .+++ +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~~~--~~ 83 (338)
T 2o7r_A 9 TGSSDPNTNLLKYLPIVLNP-DRTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYNSA--KL 83 (338)
T ss_dssp ---------CTTTCSCEECT-TSCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGSSC--CE
T ss_pred ceeeccCcccccccceEECC-CCeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcCCC--Cc
Confidence 45555444445554455543 455554321 1111 1111 123667788865 56788899999864 3333 45
Q ss_pred CEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHH
Q 007338 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 514 P~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~ 592 (607)
|+||++|++.+.. +.+... .+......|+ ++||+|+. ++. +|.+.... ....+|+.++++||
T Consensus 84 p~vv~~HGgg~~~--------~~~~~~--~~~~~~~~la~~~g~~vv~-~d~--rg~~~~~~----~~~~~d~~~~~~~l 146 (338)
T 2o7r_A 84 PLVVYFHGGGFIL--------FSAAST--IFHDFCCEMAVHAGVVIAS-VDY--RLAPEHRL----PAAYDDAMEALQWI 146 (338)
T ss_dssp EEEEEECCSTTTS--------CCTTBH--HHHHHHHHHHHHHTCEEEE-EEC--CCTTTTCT----THHHHHHHHHHHHH
T ss_pred eEEEEEcCCcCcC--------CCCCch--hHHHHHHHHHHHCCcEEEE-ecC--CCCCCCCC----chHHHHHHHHHHHH
Confidence 9999998652211 111110 0011245677 78999998 332 23332211 34578999999999
Q ss_pred HHh
Q 007338 593 IQA 595 (607)
Q Consensus 593 ~~~ 595 (607)
+++
T Consensus 147 ~~~ 149 (338)
T 2o7r_A 147 KDS 149 (338)
T ss_dssp HTC
T ss_pred HhC
Confidence 986
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0011 Score=62.95 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=61.4
Q ss_pred EEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCC
Q 007338 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (607)
Q Consensus 484 ~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (607)
.++++ .||.+|+++++.|.+.. ++. |+||++|+. ++. .....+....+.|+++||.|+. ++
T Consensus 3 ~~~~~-~~g~~l~~~~~~p~~~~--~~~--p~vvl~HG~------------~~~-~~~~~~~~~~~~l~~~g~~vi~-~D 63 (251)
T 2wtm_A 3 AMYID-CDGIKLNAYLDMPKNNP--EKC--PLCIIIHGF------------TGH-SEERHIVAVQETLNEIGVATLR-AD 63 (251)
T ss_dssp EEEEE-ETTEEEEEEEECCTTCC--SSE--EEEEEECCT------------TCC-TTSHHHHHHHHHHHHTTCEEEE-EC
T ss_pred ceEEe-cCCcEEEEEEEccCCCC--CCC--CEEEEEcCC------------Ccc-cccccHHHHHHHHHHCCCEEEE-ec
Confidence 35665 49999999999997632 223 888888752 111 0000001124688999999998 66
Q ss_pred CceeccCCCC---chhhHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 564 IPIIGEGLWS---NWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 564 ~~~~g~g~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
.+.. |... ...-......|+.+.+++|.+...++.=.|+-||
T Consensus 64 ~~G~--G~S~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~lvGhS 108 (251)
T 2wtm_A 64 MYGH--GKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHS 108 (251)
T ss_dssp CTTS--TTSSSCGGGCCHHHHHHHHHHHHHHHTTCTTEEEEEEEEET
T ss_pred CCCC--CCCCCccccCCHHHHHHHHHHHHHHHHcCcccceEEEEEEC
Confidence 5433 3321 1111245677888888888766444554555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.39 Score=47.10 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=24.5
Q ss_pred eeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..|.++|+++++...+..... ....+.|.+++..+|++
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~-----~p~g~~~d~~~~~ly~~ 47 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWS 47 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCS-----SEEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCcceEehhcCCC-----ceEEEEEEeCCCEEEEE
Confidence 578999999887655532211 14578999875555553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.26 Score=48.48 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=38.0
Q ss_pred cccceEEccCCCEEEEEeecCcc------cc---------cCCCceeEEEEECCCCceeecccCCCccccccccceEEec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEE------DN---------VSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~------~~---------~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
.+...+++|||+.++.... +.. .. .......|+++|.++|+........ .+ .....+.+++
T Consensus 25 ~v~~va~d~~G~l~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~-~~p~gia~d~ 100 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRG-DHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN--LF-YLPHGLSIDT 100 (329)
T ss_dssp CEEEEEECTTCCEEEEECT-TCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--TC-SSEEEEEECT
T ss_pred CceEEEECCCCCEEEEeCC-CCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--cc-CCceEEEECC
Confidence 5788999999976533321 100 00 0001136999999988875443211 11 1134678888
Q ss_pred CCeEEEE
Q 007338 97 NSTLLIF 103 (607)
Q Consensus 97 d~~~l~~ 103 (607)
++++++.
T Consensus 101 ~g~l~v~ 107 (329)
T 3fvz_A 101 DGNYWVT 107 (329)
T ss_dssp TSCEEEE
T ss_pred CCCEEEE
Confidence 8886554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.34 Score=46.43 Aligned_cols=40 Identities=13% Similarity=-0.034 Sum_probs=26.2
Q ss_pred CceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 007338 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (607)
Q Consensus 60 ~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~ 102 (607)
....|+++|.++|+...-...... .......++|++++++
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILF 52 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEE
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEE
Confidence 357899999988987533322220 0145677889999877
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.26 Score=47.06 Aligned_cols=132 Identities=9% Similarity=0.122 Sum_probs=68.6
Q ss_pred eEEEEeCCCC-eeecCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 158 QLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 158 ~l~~~~~~g~-~~~lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
.|++++.+|+ ...+... .....+.++|||+ |+++... ...|++++.++.....+....
T Consensus 101 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~------ 161 (286)
T 1q7f_A 101 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECK------------VMRVIIFDQNGNVLHKFGCSK------ 161 (286)
T ss_dssp EEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETT------------TTEEEEECTTSCEEEEEECTT------
T ss_pred EEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEECC------------CCEEEEEcCCCCEEEEeCCCC------
Confidence 4555555443 2233221 2345789999986 6555321 236889998776655553200
Q ss_pred cccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC--cccceeeEcCCCcE
Q 007338 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLA 312 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~--~~~~~~~ws~Dg~~ 312 (607)
....+..+.++++|. + |+.... ...+++++. .|.....+.... .....+++++||..
T Consensus 162 -----~~~~p~~i~~~~~g~--l-~v~~~~----------~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 162 -----HLEFPNGVVVNDKQE--I-FISDNR----------AHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp -----TCSSEEEEEECSSSE--E-EEEEGG----------GTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred -----ccCCcEEEEECCCCC--E-EEEECC----------CCEEEEEcC---CCCEEEEEccCCccCCCcEEEECCCCCE
Confidence 011234588888875 3 332211 123444442 221112221111 23456889999986
Q ss_pred EEEEEeccccce-EEEEEcCCC
Q 007338 313 LVNETWYKTSQT-RTWLVCPGS 333 (607)
Q Consensus 313 l~~~~~~~~~~~-~l~~~dl~~ 333 (607)
++.... .. .|.+++.++
T Consensus 221 ~v~~~~----~~~~i~~~~~~g 238 (286)
T 1q7f_A 221 LIADNH----NNFNLTIFTQDG 238 (286)
T ss_dssp EEEECS----SSCEEEEECTTS
T ss_pred EEEeCC----CCEEEEEECCCC
Confidence 666531 22 788888765
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0015 Score=66.08 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=60.8
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+++++.||..|.+++|.|.+-. + ++|+||++|++.|.. ++.... .+......|+++||+|+.
T Consensus 81 ~~~~~~~~~~~g~~l~~~v~~p~~~~--~--~~p~vv~iHGgg~~~--------g~~~~~--~~~~~~~~la~~g~~vv~ 146 (361)
T 1jkm_A 81 ETSTETILGVDGNEITLHVFRPAGVE--G--VLPGLVYTHGGGMTI--------LTTDNR--VHRRWCTDLAAAGSVVVM 146 (361)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCC--S--CEEEEEEECCSTTTS--------SCSSSH--HHHHHHHHHHHTTCEEEE
T ss_pred eeeeeeeecCCCCeEEEEEEeCCCCC--C--CCeEEEEEcCCcccc--------CCCccc--chhHHHHHHHhCCCEEEE
Confidence 56778889999999999999998632 2 359999998642111 111100 001125688889999998
Q ss_pred CCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
++. +|.|+.....-......|+.++++||.+.
T Consensus 147 -~d~--r~~gg~~~~~~~~~~~~D~~~~~~~v~~~ 178 (361)
T 1jkm_A 147 -VDF--RNAWTAEGHHPFPSGVEDCLAAVLWVDEH 178 (361)
T ss_dssp -EEC--CCSEETTEECCTTHHHHHHHHHHHHHHHT
T ss_pred -Eec--CCCCCCCCCCCCCccHHHHHHHHHHHHhh
Confidence 443 22211101111134468899999999876
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0029 Score=64.28 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=59.9
Q ss_pred ceEEEEEECCC--C--ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCC-CCCchhHHHh-cc
Q 007338 481 QKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFL-AR 554 (607)
Q Consensus 481 ~~e~i~~~s~D--G--~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~-~~~~~~q~la-~~ 554 (607)
+...|.|++.| | ..+.|+|+.|.+- + .+.|+|++.|+.... ....|. +.. ..+...+.|| ++
T Consensus 42 ~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~-~---~~~PvV~~~HG~~~~-------~~~~ps-~~~~~~~~~~~~lal~~ 109 (377)
T 4ezi_A 42 QLYKINYKTQSPDGNLTIASGLVAMPIHP-V---GQVGIISYQHGTRFE-------RNDVPS-RNNEKNYIYLAAYGNSA 109 (377)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEESSC-S---SCEEEEEEECCCCCS-------TTCSGG-GCCGGGHHHHHHHTTTT
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCCC-C---CCCcEEEEeCCCcCC-------cccCCC-cCcccchHHHHHHHHhC
Confidence 66778887765 5 4588999999874 1 245999999865210 001111 110 0112246788 99
Q ss_pred CeEEEeCCCCceeccCCCC-------chhhHHHHhhcHHHHHHHHHHh-cccccccc
Q 007338 555 RFAVLAGPSIPIIGEGLWS-------NWFQVQRLLLKKLFDVEWLIQA-ELLLEDTL 603 (607)
Q Consensus 555 GY~Vl~~~~~~~~g~g~~~-------~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~ 603 (607)
||+|+. ++. +|.|... ........+.|.++++..+.++ |+.|.+++
T Consensus 110 Gy~Vv~-~D~--rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v 163 (377)
T 4ezi_A 110 GYMTVM-PDY--LGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKL 163 (377)
T ss_dssp CCEEEE-ECC--TTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEE-eCC--CCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 999998 555 3443321 1111223344555555555554 66565554
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00062 Score=70.44 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=60.6
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+.++. +|.+|.++++.|.+ . + +.|+||++|+. ++... .......+.|+++||.|+.
T Consensus 167 ~~~~v~i~~-~g~~l~~~~~~P~~-~--~--~~P~vv~~hG~------------~~~~~--~~~~~~~~~l~~~G~~V~~ 226 (415)
T 3mve_A 167 IIKQLEIPF-EKGKITAHLHLTNT-D--K--PHPVVIVSAGL------------DSLQT--DMWRLFRDHLAKHDIAMLT 226 (415)
T ss_dssp EEEEEEEEC-SSSEEEEEEEESCS-S--S--CEEEEEEECCT------------TSCGG--GGHHHHHHTTGGGTCEEEE
T ss_pred CeEEEEEEE-CCEEEEEEEEecCC-C--C--CCCEEEEECCC------------CccHH--HHHHHHHHHHHhCCCEEEE
Confidence 578888876 88999999999986 2 2 34999998853 11100 0001124678899999998
Q ss_pred CCCCceecc-CCC-CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIGE-GLW-SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g~-g~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.|..|. ... ....+ ...+.+++++|.+.+.+|.+++
T Consensus 227 -~D~~G~G~s~~~~~~~~~----~~~~~~v~~~l~~~~~vd~~~i 266 (415)
T 3mve_A 227 -VDMPSVGYSSKYPLTEDY----SRLHQAVLNELFSIPYVDHHRV 266 (415)
T ss_dssp -ECCTTSGGGTTSCCCSCT----THHHHHHHHHGGGCTTEEEEEE
T ss_pred -ECCCCCCCCCCCCCCCCH----HHHHHHHHHHHHhCcCCCCCcE
Confidence 55544331 111 11112 2223567788888777777763
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0017 Score=62.14 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=62.9
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+.++ .||.+|.++++.|.+ ++. |+||++|+. ++. ..........+.|+.+||.|+.
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~----~~~--p~vv~~HG~------------~~~-~~~~~~~~~~~~l~~~G~~v~~ 80 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG----EIY--DMAIIFHGF------------TAN-RNTSLLREIANSLRDENIASVR 80 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS----SSE--EEEEEECCT------------TCC-TTCHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEec-cCCEEEEEEEEcCCC----CCC--CEEEEEcCC------------CCC-ccccHHHHHHHHHHhCCcEEEE
Confidence 44555554 699999999999974 223 899998853 111 0000011235689999999998
Q ss_pred CCCCceeccCCC---CchhhHHHHhhcHHHHHHHHHHhccccccccccc
Q 007338 561 GPSIPIIGEGLW---SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEH 606 (607)
Q Consensus 561 ~~~~~~~g~g~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 606 (607)
++.+ |.|.. ....-.....+|+.+.+++|.++.-.+.=.|+-|
T Consensus 81 -~d~~--G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~i~l~G~ 126 (270)
T 3pfb_A 81 -FDFN--GHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGH 126 (270)
T ss_dssp -ECCT--TSTTSSSCGGGCCHHHHHHHHHHHHHHHHTCTTEEEEEEEEE
T ss_pred -Eccc--cccCCCCCCCccCHHHHHHhHHHHHHHHHhCcCCCeEEEEEe
Confidence 5554 33333 1222235678899999999987643344344444
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0023 Score=63.56 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=60.6
Q ss_pred CceEEEEEECCCCc-eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeE
Q 007338 480 LQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFA 557 (607)
Q Consensus 480 ~~~e~i~~~s~DG~-~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~ 557 (607)
...+.+++.+.||. +|.+++|.|.+-. + +.|+||++|++.+ +.+....+ ......|++ .||.
T Consensus 49 ~~~~~~~i~~~~g~~~l~~~~~~P~~~~--~--~~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~G~~ 112 (323)
T 1lzl_A 49 VSLRELSAPGLDGDPEVKIRFVTPDNTA--G--PVPVLLWIHGGGF--------AIGTAESS----DPFCVEVARELGFA 112 (323)
T ss_dssp EEEEEEEECCSTTCCCEEEEEEEESSCC--S--CEEEEEEECCSTT--------TSCCGGGG----HHHHHHHHHHHCCE
T ss_pred ceEEEEEecCCCCCceeEEEEEecCCCC--C--CCcEEEEECCCcc--------ccCChhhh----HHHHHHHHHhcCcE
Confidence 36788999999997 8999999997522 2 3499999986421 11111111 112456776 5999
Q ss_pred EEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 558 VLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 558 Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
|+. ++. +|.|.... .....|+.++++||.+.
T Consensus 113 Vv~-~d~--rg~~~~~~----~~~~~d~~~~~~~l~~~ 143 (323)
T 1lzl_A 113 VAN-VEY--RLAPETTF----PGPVNDCYAALLYIHAH 143 (323)
T ss_dssp EEE-ECC--CCTTTSCT----THHHHHHHHHHHHHHHT
T ss_pred EEE-ecC--CCCCCCCC----CchHHHHHHHHHHHHhh
Confidence 998 443 34444322 23467899999999874
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0086 Score=60.14 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=65.9
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCC--CCchhHHHhccCeE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARRFA 557 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~--~~~~~q~la~~GY~ 557 (607)
...+.+.++..||..|..+.+.|....+....+-|+||++|+.. ++...|... .....+.|+++||.
T Consensus 25 ~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~-----------~~~~~~~~~~~~~~~a~~l~~~G~~ 93 (377)
T 1k8q_A 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLL-----------ASATNWISNLPNNSLAFILADAGYD 93 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTT-----------CCGGGGSSSCTTTCHHHHHHHTTCE
T ss_pred CCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCC-----------CchhhhhcCCCcccHHHHHHHCCCC
Confidence 36788899999999999999877642200001228888888531 111122211 11224589999999
Q ss_pred EEeCCCCceeccCCCC-------c-----hhhHHHHhh-cHHHHHHHHHHhcccccccccccC
Q 007338 558 VLAGPSIPIIGEGLWS-------N-----WFQVQRLLL-KKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 558 Vl~~~~~~~~g~g~~~-------~-----~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
|+. ++.+-.| ... . ..-...+.. |+.+.|++|+++--.+.=.|+-||
T Consensus 94 vi~-~D~~G~G--~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~~~~~~~lvG~S 153 (377)
T 1k8q_A 94 VWL-GNSRGNT--WARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHS 153 (377)
T ss_dssp EEE-CCCTTST--TSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEET
T ss_pred EEE-ecCCCCC--CCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhcCcCceEEEEec
Confidence 998 6654333 221 0 112245555 899999998875322333444443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0076 Score=64.22 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=35.5
Q ss_pred cccce--EEccCC-CEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFV--SWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~--~~SPDG-~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+... .|+||| +.||-.+. ...|.++|+.+++.. .+...... ..+..+.|+|+++.++..
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~----------D~tvklWD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAV----------DGYFYIFNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEET----------TSEEEEECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEEEEE
T ss_pred cEEEEEEEcCCCCCeEEEEecc----------CCeEEEEECCCCCccccccccccc---CcccceEeCCCcCeEEEe
Confidence 57777 679998 55554432 257778899876532 22111110 014578999998776653
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=61.93 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.+. +|.++..++|+|++++ +++ +|+||+.|++. +....|... ....++++++||+|+
T Consensus 21 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~--~p~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv 85 (283)
T 4b6g_A 21 SQQVWAHHAQTLQCEMKFAVYLPNNPE-NRP--LGVIYWLSGLT-----------CTEQNFITK-SGFQRYAAEHQVIVV 85 (283)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECCCTT-CCC--EEEEEEECCTT-----------CCSHHHHHH-SCTHHHHHHHTCEEE
T ss_pred cEEEEEEechhhCCceEEEEEeCCCCC-CCC--CCEEEEEcCCC-----------CCccchhhc-ccHHHHHhhCCeEEE
Confidence 3445555544 7899999999999986 344 49999988641 111111100 112468888999999
Q ss_pred eCCCC
Q 007338 560 AGPSI 564 (607)
Q Consensus 560 ~~~~~ 564 (607)
. ++.
T Consensus 86 ~-~d~ 89 (283)
T 4b6g_A 86 A-PDT 89 (283)
T ss_dssp E-ECS
T ss_pred E-ecc
Confidence 8 543
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=62.63 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=59.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhcc-CeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~-GY~Vl 559 (607)
..+.+++++.|| +|.+++|.|.+- + +.|+||++|++.+ +.++...| ......|+.+ ||.|+
T Consensus 47 ~~~~~~i~~~~g-~i~~~~~~p~~~---~--~~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~v~ 108 (311)
T 2c7b_A 47 ETRDVHIPVSGG-SIRARVYFPKKA---A--GLPAVLYYHGGGF--------VFGSIETH----DHICRRLSRLSDSVVV 108 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSSC---S--SEEEEEEECCSTT--------TSCCTGGG----HHHHHHHHHHHTCEEE
T ss_pred eEEEEEecCCCC-cEEEEEEecCCC---C--CCcEEEEECCCcc--------cCCChhhh----HHHHHHHHHhcCCEEE
Confidence 678899999888 999999999752 2 2499999886411 11111111 1124577776 99999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. ++. +|.|.... .....|+.++++||.+.
T Consensus 109 ~-~d~--rg~g~~~~----~~~~~d~~~~~~~l~~~ 137 (311)
T 2c7b_A 109 S-VDY--RLAPEYKF----PTAVEDAYAALKWVADR 137 (311)
T ss_dssp E-ECC--CCTTTSCT----THHHHHHHHHHHHHHHT
T ss_pred E-ecC--CCCCCCCC----CccHHHHHHHHHHHHhh
Confidence 8 544 34444322 23467899999999876
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.047 Score=55.94 Aligned_cols=68 Identities=9% Similarity=0.011 Sum_probs=38.4
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC-CCeeEEeccCCCCCCC--Cccccc--ccCCCCcceee
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDI--PVCYNS--VREGMRSISWR 250 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~--~~~~~~--~~~~~~~~~ws 250 (607)
....+.+||||++|+++... ...|.++|+. .++.+.+...++.-.. +....+ ...+++.+.+|
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg------------~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWG------------IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp CCCCEEECTTSCEEEEEETT------------TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ceeEEEECCCCCEEEEEeCC------------CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 34578999999999887532 2367788874 4444444332221000 000000 01246789999
Q ss_pred cCCCc
Q 007338 251 ADKPS 255 (607)
Q Consensus 251 pdg~~ 255 (607)
|||+.
T Consensus 390 pDGk~ 394 (462)
T 2ece_A 390 RDGRR 394 (462)
T ss_dssp TTSSE
T ss_pred CCCCE
Confidence 99983
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.11 Score=55.10 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=69.1
Q ss_pred ccceEEcc-----CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEE-e-cCCeEEEEEe
Q 007338 33 INFVSWSP-----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-V-NNSTLLIFTI 105 (607)
Q Consensus 33 ~~~~~~SP-----DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W-s-pd~~~l~~~~ 105 (607)
...|..|. ||++| |+.. .....|.++|+++.+..+++..+.+. ....+.+ + |+++++|...
T Consensus 87 ~hh~~~s~t~g~~DG~~l-fVnd--------~~~~rVavIdl~t~~~~~ii~ip~g~---~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 87 LHHVHMSFTEGKYDGRFL-FMND--------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp BCCEEEEEETTEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred CCccccCCCCCCcCCCEE-EEEc--------CCCCEEEEEECCCceEeeEEeCCCCC---CCcceeeeecCCCcEEEEec
Confidence 34589998 99885 5544 34678999999999977665444321 1346666 4 8988777752
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeC
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPS 183 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~S 183 (607)
... . + + ..+|+. +.. .++ ....+-++|. +.+ ..++.-++....+..|
T Consensus 155 ~~~-~--p----~--------~~dg~~---------l~~-~~~------~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s 203 (595)
T 1fwx_A 155 EDE-T--P----L--------VNDGTN---------MED-VAN------YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 203 (595)
T ss_dssp CSC-E--E----S--------SCSSSS---------TTC-GGG------EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred ccc-c--c----c--------CCCCcc---------ccc-ccc------cCceEEEEECCCCeEEEEEEeCCCccceEEC
Confidence 110 0 0 0 001210 000 000 1245667777 443 3344322334567899
Q ss_pred CCCceEEEEEccC
Q 007338 184 PDQKYVLITSMHR 196 (607)
Q Consensus 184 pDg~~i~~~~~~~ 196 (607)
|||+++++++...
T Consensus 204 pdGk~~~vt~~~s 216 (595)
T 1fwx_A 204 YEGKWAFSTSYNS 216 (595)
T ss_dssp SSSSEEEEEESCT
T ss_pred CCCCEEEEEecCc
Confidence 9999999997543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.86 Score=50.73 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=23.7
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
..+++.+.++.|+++-.. ...|+++++++...+.|
T Consensus 474 ~GLAvD~~~~~LY~tD~~------------~~~I~v~~ldG~~~~~l 508 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSV------------LGTVSVADTKGVKRKTL 508 (791)
T ss_dssp CEEEEETTTTEEEEEETT------------TTEEEEEETTSSSEEEE
T ss_pred ceeeeeecCCcEEEEecC------------CCeEEEEeCCCCeEEEE
Confidence 467787788888877432 23688888887655444
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=66.03 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=52.5
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEEeCCCCceeccCC
Q 007338 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGL 571 (607)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl~~~~~~~~g~g~ 571 (607)
..|.+++|.|.+- + +.|+||++|++-+ +.++...+ ......||. .||+|+. ++.+ +.+.
T Consensus 65 ~~i~~~~~~p~~~---~--~~p~vv~~HGGg~--------~~g~~~~~----~~~~~~la~~~g~~vv~-~dyr--~~p~ 124 (322)
T 3fak_A 65 AGCAAEWVRAPGC---Q--AGKAILYLHGGGY--------VMGSINTH----RSMVGEISRASQAAALL-LDYR--LAPE 124 (322)
T ss_dssp TTEEEEEEECTTC---C--TTCEEEEECCSTT--------TSCCHHHH----HHHHHHHHHHHTSEEEE-ECCC--CTTT
T ss_pred CCeEEEEEeCCCC---C--CccEEEEEcCCcc--------ccCChHHH----HHHHHHHHHhcCCEEEE-EeCC--CCCC
Confidence 4599999999752 2 3499999986411 11111111 112345555 6999998 4432 2222
Q ss_pred CCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 572 WSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 572 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.. + ...++|+.++++||+++++ |.+++
T Consensus 125 ~~---~-~~~~~D~~~a~~~l~~~~~-d~~ri 151 (322)
T 3fak_A 125 HP---F-PAAVEDGVAAYRWLLDQGF-KPQHL 151 (322)
T ss_dssp SC---T-THHHHHHHHHHHHHHHHTC-CGGGE
T ss_pred CC---C-CcHHHHHHHHHHHHHHcCC-CCceE
Confidence 21 2 3457899999999999954 77765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.45 Score=44.96 Aligned_cols=67 Identities=12% Similarity=0.271 Sum_probs=44.7
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCe
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.++|.++.. ..+..+|.||++.|+.+.+ ....|+.+|+. |+. +++. ... . .-...+.+.++++
T Consensus 19 ~~~l~g~~~--~lSGla~~~~~~~L~aV~d---------~~~~I~~ld~~-g~v~~~i~-l~g-~--~D~EGIa~~~~g~ 82 (255)
T 3qqz_A 19 GKEIAGITN--NISSLTWSAQSNTLFSTIN---------KPAAIVEMTTN-GDLIRTIP-LDF-V--KDLETIEYIGDNQ 82 (255)
T ss_dssp EEECTTCCS--CEEEEEEETTTTEEEEEEE---------TTEEEEEEETT-CCEEEEEE-CSS-C--SSEEEEEECSTTE
T ss_pred ceECCCccc--CcceeEEeCCCCEEEEEEC---------CCCeEEEEeCC-CCEEEEEe-cCC-C--CChHHeEEeCCCE
Confidence 456665543 5899999999998877664 25789999998 654 4442 111 0 0156788888887
Q ss_pred EEEE
Q 007338 100 LLIF 103 (607)
Q Consensus 100 ~l~~ 103 (607)
+++.
T Consensus 83 ~~vs 86 (255)
T 3qqz_A 83 FVIS 86 (255)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0014 Score=63.42 Aligned_cols=96 Identities=13% Similarity=-0.018 Sum_probs=58.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCC---CCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGY---DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~---~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~ 557 (607)
..+.|.|+..+|..+...+| |++. .+++ +.|+||++|++.+.. +....| ....+.|+++||.
T Consensus 18 ~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~--~~p~vv~lHGgg~~~--------~~~~~~----~~~~~~l~~~G~~ 82 (283)
T 3bjr_A 18 QGMQVIKQKLTATCAQLTGY-LHQPDTNAHQT--NLPAIIIVPGGSYTH--------IPVAQA----ESLAMAFAGHGYQ 82 (283)
T ss_dssp CSSEEEEEECTTSSCEEEEE-EC--------C--CEEEEEEECCSTTTC--------CCHHHH----HHHHHHHHTTTCE
T ss_pred CCcceEEeecCCCceeEEEe-cCCccccccCC--CCcEEEEECCCcccc--------CCcccc----HHHHHHHHhCCcE
Confidence 77889999999999999999 8752 2333 349999988641110 000011 1125689999999
Q ss_pred EEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 558 VLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 558 Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
|+. ++. +|.|... ..+ .....|+.++++||.+..
T Consensus 83 v~~-~d~--~g~~~~~-~~~-~~~~~d~~~~~~~l~~~~ 116 (283)
T 3bjr_A 83 AFY-LEY--TLLTDQQ-PLG-LAPVLDLGRAVNLLRQHA 116 (283)
T ss_dssp EEE-EEC--CCTTTCS-SCB-THHHHHHHHHHHHHHHSH
T ss_pred EEE-Eec--cCCCccc-cCc-hhHHHHHHHHHHHHHHHH
Confidence 998 443 2333320 011 234678899999998753
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.056 Score=59.67 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=23.3
Q ss_pred eeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..|+++++++++...+..... ....+.|.+.+..||++
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~-----~p~gla~d~~~~~Ly~s 423 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWS 423 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCT-----TCCCCEEETTTTEEEEC
T ss_pred cceEEEeCCCCcceeeeccCc-----ceEEEccccccCeEEEE
Confidence 478888888877665532211 14578898876555653
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0053 Score=60.45 Aligned_cols=106 Identities=11% Similarity=-0.064 Sum_probs=60.9
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
++...+++.||.+|+++.+.|.+-.+ ++. |+||++|+- ++....+ ....+.|+++||.|+.
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~~~-~~~--~~VvllHG~------------g~~~~~~---~~~~~~L~~~G~~Vi~- 67 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKENVP-FKN--NTILIASGF------------ARRMDHF---AGLAEYLSTNGFHVFR- 67 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSC-CCS--CEEEEECTT------------CGGGGGG---HHHHHHHHTTTCCEEE-
T ss_pred ceEEEEEcCCCCEEEEEEecCcccCC-CCC--CEEEEecCC------------ccCchHH---HHHHHHHHHCCCEEEE-
Confidence 45667888899999999998864221 122 788887742 1111110 1235689999999998
Q ss_pred CCCcee-cc-CCCCchhhHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 562 PSIPII-GE-GLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 562 ~~~~~~-g~-g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
++.+.+ |. .......-...+.+|+.+.+++|-+.++ +.=.|+-||
T Consensus 68 ~D~rGh~G~S~~~~~~~~~~~~~~D~~~~~~~l~~~~~-~~~~lvGhS 114 (305)
T 1tht_A 68 YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGT-QNIGLIAAS 114 (305)
T ss_dssp ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTTC-CCEEEEEET
T ss_pred eeCCCCCCCCCCcccceehHHHHHHHHHHHHHHHhCCC-CceEEEEEC
Confidence 665433 31 1111111124567788888888875453 333444444
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.9 Score=50.57 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=35.3
Q ss_pred ceEEEEeCCCC-eeecCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 157 AQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 157 ~~l~~~~~~g~-~~~lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
.+|++++++|. .+.|... .....+++.|.+.+|+++.... ...|+++++++...+.|
T Consensus 493 ~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-----------~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEEE
T ss_pred CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC-----------CCeEEEEecCCCceEEE
Confidence 46777777663 3333221 2345789999888888875321 13688888887655544
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0099 Score=56.36 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=57.9
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
...+.+++.||.+|+++++.|.+ . + +.|+||++||+.+.. +....+ .....++|+++ |.|+.
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~-~--~--~~~~vv~~HG~~~~~--------~~~~~~---~~~~~~~l~~~-~~v~~- 64 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN-Q--P--TKGVIVYIHGGGLMF--------GKANDL---SPQYIDILTEH-YDLIQ- 64 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS-S--S--CSEEEEEECCSTTTS--------CCTTCS---CHHHHHHHTTT-EEEEE-
T ss_pred ceEEEEecCCcEEEEEEEEccCC-C--C--CCCEEEEEECCcccC--------Cchhhh---HHHHHHHHHhC-ceEEe-
Confidence 35678889999999999999974 1 1 339999988642110 111111 11234577776 99998
Q ss_pred CCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 562 PSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+ |.|.. .......|+.+++++|.++
T Consensus 65 ~d~~--~~~~~----~~~~~~~d~~~~~~~l~~~ 92 (275)
T 3h04_A 65 LSYR--LLPEV----SLDCIIEDVYASFDAIQSQ 92 (275)
T ss_dssp ECCC--CTTTS----CHHHHHHHHHHHHHHHHHT
T ss_pred eccc--cCCcc----ccchhHHHHHHHHHHHHhh
Confidence 5543 33332 1245688999999999987
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.69 Score=44.88 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=44.2
Q ss_pred CCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC
Q 007338 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (607)
Q Consensus 19 g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~ 98 (607)
...+.+.+++.......+.|+|||+ |+++ .. ....|+++|.+++....+ .... ....+.+++++
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~-d~--------~~~~I~~~d~~g~~~~~~-~~~~-----~p~gia~~~dG 83 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVT-NH--------EVGEIVSITPDGNQQIHA-TVEG-----KVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEE-ET--------TTTEEEEECTTCCEEEEE-ECSS-----EEEEEEECTTS
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEE-eC--------CCCeEEEECCCCceEEEE-eCCC-----CceeEEEcCCC
Confidence 3455666676555678899999997 5444 32 246799999986543332 2222 14577888888
Q ss_pred eEEEE
Q 007338 99 TLLIF 103 (607)
Q Consensus 99 ~~l~~ 103 (607)
++++.
T Consensus 84 ~l~va 88 (306)
T 2p4o_A 84 DLVAT 88 (306)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 86554
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.006 Score=60.58 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=60.4
Q ss_pred ceEEE-EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMI-KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i-~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+ .++..||.+|.++++.|.+ + +.|+||++|+.. +....| ....+.|+++||.|+
T Consensus 33 ~~~~~~~~~~~dg~~l~~~~~~p~~----~--~~p~vv~~HG~~-----------~~~~~~----~~~~~~l~~~g~~vi 91 (342)
T 3hju_A 33 PYQDLPHLVNADGQYLFCRYWKPTG----T--PKALIFVSHGAG-----------EHSGRY----EELARMLMGLDLLVF 91 (342)
T ss_dssp BTTSSCEEECTTSCEEEEEEECCSS----C--CSEEEEEECCTT-----------CCGGGG----HHHHHHHHTTTEEEE
T ss_pred ccccCceEEccCCeEEEEEEeCCCC----C--CCcEEEEECCCC-----------cccchH----HHHHHHHHhCCCeEE
Confidence 34444 7888999999999999874 2 238999988531 111111 123578999999999
Q ss_pred eCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. ++.+ |.|.. ..........+|+.+.+++|..+
T Consensus 92 ~-~D~~--G~G~S~~~~~~~~~~~~~~~d~~~~l~~l~~~ 128 (342)
T 3hju_A 92 A-HDHV--GHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD 128 (342)
T ss_dssp E-ECCT--TSTTSCSSTTCCSCTHHHHHHHHHHHHHHHHH
T ss_pred E-EcCC--CCcCCCCcCCCcCcHHHHHHHHHHHHHHHHHh
Confidence 8 5554 33332 12223366788999999999887
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0033 Score=65.61 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCC
Q 007338 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWS 573 (607)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~ 573 (607)
.|.|++++|++ + + +.|+||++|+. ..... .+..+.||++||+|+. ++. +|.|..+
T Consensus 160 ~l~~~l~~P~~--~-~--~~P~Vv~lhG~--------------~~~~~---~~~a~~La~~Gy~Vla-~D~--rG~~~~~ 214 (446)
T 3hlk_A 160 RVRGTLFLPPE--P-G--PFPGIVDMFGT--------------GGGLL---EYRASLLAGKGFAVMA-LAY--YNYEDLP 214 (446)
T ss_dssp TEEEEEEECSS--S-C--CBCEEEEECCS--------------SCSCC---CHHHHHHHTTTCEEEE-ECC--SSSTTSC
T ss_pred eEEEEEEeCCC--C-C--CCCEEEEECCC--------------Ccchh---hHHHHHHHhCCCEEEE-ecc--CCCCCCC
Confidence 79999999985 1 2 44999998753 11111 1236899999999998 554 3443321
Q ss_pred chhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 574 NWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 574 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.. ......+|+.++++||.++..+|.+++
T Consensus 215 ~~-~~~~~~~d~~~a~~~l~~~~~vd~~~i 243 (446)
T 3hlk_A 215 KT-METLHLEYFEEAMNYLLSHPEVKGPGV 243 (446)
T ss_dssp SC-CSEEEHHHHHHHHHHHHTSTTBCCSSE
T ss_pred cc-hhhCCHHHHHHHHHHHHhCCCCCCCCE
Confidence 11 001126788999999999988877654
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=67.34 Aligned_cols=84 Identities=20% Similarity=0.176 Sum_probs=55.2
Q ss_pred eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCC
Q 007338 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWS 573 (607)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~ 573 (607)
.|.|++++|++- + +.|+||++|+. ...+. .+..+.||++||+|+. ++. +|.|..+
T Consensus 144 ~l~~~l~~P~~~---~--~~P~Vv~~hG~--------------~~~~~---~~~a~~La~~Gy~V~a-~D~--rG~g~~~ 198 (422)
T 3k2i_A 144 RVRATLFLPPGP---G--PFPGIIDIFGI--------------GGGLL---EYRASLLAGHGFATLA-LAY--YNFEDLP 198 (422)
T ss_dssp TEEEEEEECSSS---C--CBCEEEEECCT--------------TCSCC---CHHHHHHHTTTCEEEE-EEC--SSSTTSC
T ss_pred cEEEEEEcCCCC---C--CcCEEEEEcCC--------------Ccchh---HHHHHHHHhCCCEEEE-Ecc--CCCCCCC
Confidence 799999999861 2 34999998753 11111 1236799999999998 443 3443321
Q ss_pred chhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 574 NWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 574 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.. ......+|+.++++||.++..+|.+++
T Consensus 199 ~~-~~~~~~~d~~~~~~~l~~~~~v~~~~i 227 (422)
T 3k2i_A 199 NN-MDNISLEYFEEAVCYMLQHPQVKGPGI 227 (422)
T ss_dssp SS-CSCEETHHHHHHHHHHHTSTTBCCSSE
T ss_pred CC-cccCCHHHHHHHHHHHHhCcCcCCCCE
Confidence 11 111236788999999999988777654
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.006 Score=61.27 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=60.9
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCC--------------CCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCc
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYD--------------QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT 546 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~--------------~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~ 546 (607)
..+.+.+.+ |..|..++|+|++.. +++ +.|+||++|++.+. .+..... .+..
T Consensus 71 ~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~p~vv~~HGgg~~--------~g~~~~~--~~~~ 136 (351)
T 2zsh_A 71 FSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGD--IVPVILFFHGGSFA--------HSSANSA--IYDT 136 (351)
T ss_dssp EEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSS--SCEEEEEECCSTTT--------SCCTTBH--HHHH
T ss_pred eEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCC--CceEEEEECCCcCc--------CCCCcch--hHHH
Confidence 556677755 567899999998752 223 45999999864211 1111110 0011
Q ss_pred hhHHHh-ccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhcc----cccc
Q 007338 547 SSLIFL-ARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAEL----LLED 601 (607)
Q Consensus 547 ~~q~la-~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~ 601 (607)
..+.|| ++||+|+. ++. +|.+... + ....+|+.++++||+++.+ +|.+
T Consensus 137 ~~~~la~~~g~~vv~-~d~--rg~~~~~---~-~~~~~D~~~~~~~l~~~~~~~~~~d~~ 189 (351)
T 2zsh_A 137 LCRRLVGLCKCVVVS-VNY--RRAPENP---Y-PCAYDDGWIALNWVNSRSWLKSKKDSK 189 (351)
T ss_dssp HHHHHHHHHTSEEEE-ECC--CCTTTSC---T-THHHHHHHHHHHHHHTCGGGCCTTTSS
T ss_pred HHHHHHHHcCCEEEE-ecC--CCCCCCC---C-chhHHHHHHHHHHHHhCchhhcCCCCC
Confidence 246788 78999998 443 3333221 1 3457899999999998763 5655
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.054 Score=59.77 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=22.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
....+.|++++++|+++-. ....|+++++.+
T Consensus 407 ~p~gla~d~~~~~Ly~sD~---------~~~~I~~~~~~g 437 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDL---------SQRMICSTQLDR 437 (699)
T ss_dssp TCCCCEEETTTTEEEECCT---------TTTSBEEEESCC
T ss_pred ceEEEccccccCeEEEEec---------CCCeEEEEecCC
Confidence 5678899998888766532 245788899886
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0079 Score=58.88 Aligned_cols=87 Identities=7% Similarity=0.066 Sum_probs=53.7
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.+.+.|. +..+...+|+|.+-. + +.|+||++|++-+. .+....+ ....+.|+++||+|+.
T Consensus 58 ~~~i~y~---~~~~~~~~~~p~~~~--~--~~p~vv~~HGgg~~--------~~~~~~~----~~~~~~l~~~G~~v~~- 117 (303)
T 4e15_A 58 VDHLRYG---EGRQLVDVFYSEKTT--N--QAPLFVFVHGGYWQ--------EMDMSMS----CSIVGPLVRRGYRVAV- 117 (303)
T ss_dssp EEEEECS---STTCEEEEEECTTCC--T--TCCEEEEECCSTTT--------SCCGGGS----CTTHHHHHHTTCEEEE-
T ss_pred eeeeccC---CCCcEEEEEecCCCC--C--CCCEEEEECCCcCc--------CCChhHH----HHHHHHHHhCCCEEEE-
Confidence 4455554 445677788887422 3 34999999864211 1111111 1235789999999998
Q ss_pred CCCceeccCCCCchhhHHHHhhcHHHHHHHHHH
Q 007338 562 PSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
++. ++.|.. -......|+.++++||.+
T Consensus 118 ~d~--r~~~~~----~~~~~~~d~~~~~~~l~~ 144 (303)
T 4e15_A 118 MDY--NLCPQV----TLEQLMTQFTHFLNWIFD 144 (303)
T ss_dssp ECC--CCTTTS----CHHHHHHHHHHHHHHHHH
T ss_pred ecC--CCCCCC----ChhHHHHHHHHHHHHHHH
Confidence 443 223322 125668899999999987
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0051 Score=59.20 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=44.3
Q ss_pred ceEEEEEEC-CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s-~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.+ .+|.++..++|+|++++ +++ .|+||++|+.. +....|... ....++++.+||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~--~p~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv 78 (278)
T 3e4d_A 14 MQGVFSHQSETLKSEMTFAVYVPPKAI-HEP--CPVVWYLSGLT-----------CTHANVMEK-GEYRRMASELGLVVV 78 (278)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG-TSC--EEEEEEECCTT-----------CCSHHHHHH-SCCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCcceEEEEcCCCCC-CCC--CCEEEEEcCCC-----------CCccchhhc-ccHHHHHhhCCeEEE
Confidence 456666654 57899999999999875 343 49999988641 111111110 012456777799999
Q ss_pred eCCCCce
Q 007338 560 AGPSIPI 566 (607)
Q Consensus 560 ~~~~~~~ 566 (607)
. ++.+.
T Consensus 79 ~-~d~~g 84 (278)
T 3e4d_A 79 C-PDTSP 84 (278)
T ss_dssp E-CCSSC
T ss_pred e-cCCcc
Confidence 8 65543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.27 E-value=0.97 Score=44.28 Aligned_cols=119 Identities=15% Similarity=0.067 Sum_probs=66.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
......|.+.++.|+++-. ....|++++++++.. ..+....-. ....+++.+.++.||++..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~---------~~~~I~r~~~~g~~~~~~~~~~~l~----~p~glavd~~~g~ly~~d~---- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDV---------SEEAIKRTEFNKTESVQNVVVSGLL----SPDGLACDWLGEKLYWTDS---- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEEET---------TTTEEEEEETTSSSCCCEEEEECCS----CCCEEEEETTTTEEEEEET----
T ss_pred ccEEEEEEeCCCEEEEEEC---------CCCcEEEEEccCCCceEEEEcCCCC----CccEEEEEcCCCeEEEEEC----
Confidence 3567789998888877642 346899999987642 112111100 1345666655444444310
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCCC--CceeeeeeCCCCc
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQK 187 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~~--~~~~~~~~SpDg~ 187 (607)
....|.+++++|. .+.+... ..-..+++.|.+.
T Consensus 99 --------------------------------------------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g 134 (318)
T 3sov_A 99 --------------------------------------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG 134 (318)
T ss_dssp --------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT
T ss_pred --------------------------------------------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC
Confidence 1235666666553 2333211 2335788888888
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
+|+++.... ...|+++++++...+
T Consensus 135 ~ly~td~~~-----------~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 135 FMYWTDWGE-----------VPKIERAGMDGSSRF 158 (318)
T ss_dssp EEEEEECSS-----------SCEEEEEETTSCSCE
T ss_pred EEEEEecCC-----------CCEEEEEEcCCCCeE
Confidence 888874321 236888888765433
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=55.45 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=55.7
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+...++-.+|..+...+|.|.+ + + .|+||++|++-+. .++...| ....+.|+++||.|+. +
T Consensus 39 ~~~~i~~~~~~~~~~~~~~p~~--~--~--~p~vv~~HGgg~~--------~~~~~~~----~~~~~~l~~~G~~v~~-~ 99 (262)
T 2pbl_A 39 ARLNLSYGEGDRHKFDLFLPEG--T--P--VGLFVFVHGGYWM--------AFDKSSW----SHLAVGALSKGWAVAM-P 99 (262)
T ss_dssp EEEEEESSSSTTCEEEEECCSS--S--C--SEEEEEECCSTTT--------SCCGGGC----GGGGHHHHHTTEEEEE-E
T ss_pred CccccccCCCCCceEEEEccCC--C--C--CCEEEEEcCcccc--------cCChHHH----HHHHHHHHhCCCEEEE-e
Confidence 3344444577778888999986 2 2 3999998864110 0111111 1235788999999998 4
Q ss_pred CCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 563 SIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 563 ~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
+.+ |.+.. -......|+.+++++|..+.
T Consensus 100 d~~--~~~~~----~~~~~~~d~~~~~~~l~~~~ 127 (262)
T 2pbl_A 100 SYE--LCPEV----RISEITQQISQAVTAAAKEI 127 (262)
T ss_dssp CCC--CTTTS----CHHHHHHHHHHHHHHHHHHS
T ss_pred CCC--CCCCC----ChHHHHHHHHHHHHHHHHhc
Confidence 442 23221 23566889999999998863
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.19 E-value=1.1 Score=44.00 Aligned_cols=41 Identities=5% Similarity=-0.066 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 324 ~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+|+++++++. ..+.+....+. .|.. +.++++++.||+...
T Consensus 145 ~~I~r~~~dG~--~~~~~~~~~l~----~Png--lavd~~~~~lY~aD~ 185 (318)
T 3sov_A 145 PKIERAGMDGS--SRFIIINSEIY----WPNG--LTLDYEEQKLYWADA 185 (318)
T ss_dssp CEEEEEETTSC--SCEEEECSSCS----CEEE--EEEETTTTEEEEEET
T ss_pred CEEEEEEcCCC--CeEEEEECCCC----CccE--EEEeccCCEEEEEEC
Confidence 58999999873 34444322111 1111 788888888888764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.19 E-value=1.1 Score=45.81 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=23.0
Q ss_pred CcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 298 ~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
...+..++|+|++..++...........|+++|++.
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 345678899999887666532221234677777765
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.013 Score=56.30 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=57.2
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
.+++.||.+|+++++.|.+ + +.|+||++|+.. ++...| ....+.|+++||.|+. ++.+
T Consensus 21 ~~~~~~g~~l~~~~~~~~~----~--~~~~vv~~hG~~-----------~~~~~~----~~~~~~l~~~g~~v~~-~d~~ 78 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG----T--PKALIFVSHGAG-----------EHSGRY----EELARMLMGLDLLVFA-HDHV 78 (303)
T ss_dssp EEECTTSCEEEEEEECCSS----C--CSEEEEEECCTT-----------CCGGGG----HHHHHHHHHTTEEEEE-ECCT
T ss_pred eEecCCCeEEEEEEeccCC----C--CCeEEEEECCCC-----------chhhHH----HHHHHHHHhCCCcEEE-eCCC
Confidence 7888999999999998874 2 239999988531 111111 1235789999999998 5554
Q ss_pred eeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 566 IIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 566 ~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
.. |.. ....-.....+|+.+.+++|..+
T Consensus 79 G~--G~s~~~~~~~~~~~~~~~d~~~~l~~l~~~ 110 (303)
T 3pe6_A 79 GH--GQSEGERMVVSDFHVFVRDVLQHVDSMQKD 110 (303)
T ss_dssp TS--TTSCSSTTCCSSTHHHHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 33 332 11122356688889999988876
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.018 Score=55.48 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=52.5
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
.++-.+|.++ .+|.|.+ + +.|+|||+|||-| +.|+...+. ......+++.||.|+. ++.+
T Consensus 8 ~~~~~~~~~~--~~y~p~~----~--~~p~iv~~HGGg~--------~~g~~~~~~---~~~~~~l~~~g~~Vi~-vdYr 67 (274)
T 2qru_A 8 NQTLANGATV--TIYPTTT----E--PTNYVVYLHGGGM--------IYGTKSDLP---EELKELFTSNGYTVLA-LDYL 67 (274)
T ss_dssp EEECTTSCEE--EEECCSS----S--SCEEEEEECCSTT--------TSCCGGGCC---HHHHHHHHTTTEEEEE-ECCC
T ss_pred cccccCCeeE--EEEcCCC----C--CCcEEEEEeCccc--------cCCChhhch---HHHHHHHHHCCCEEEE-eCCC
Confidence 5566677665 6788864 1 3399999986521 222222111 1123578888999998 4432
Q ss_pred eeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 566 IIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
+ .+...+ ...++|+.++++||.+..
T Consensus 68 --l---aPe~~~-p~~~~D~~~al~~l~~~~ 92 (274)
T 2qru_A 68 --L---APNTKI-DHILRTLTETFQLLNEEI 92 (274)
T ss_dssp --C---TTTSCH-HHHHHHHHHHHHHHHHHT
T ss_pred --C---CCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 1 222233 567999999999999764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.13 Score=58.70 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=39.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc-------CCCccccccccceEEecC-CeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-------SPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~-------~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
.+....|+|||++|+.... ...|.++|+.+++...... .........+..+.|+|+ +.+++.
T Consensus 100 ~V~~v~~sp~g~~l~sgs~----------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQ----------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp CEEEEECCTTCSEEEEEET----------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEcC----------CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 5889999999999876543 3578888999887531110 000011122668999997 455554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.71 Score=43.56 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=25.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
......++ || .| |.++.. .+.+.|.++|+++|+..+-.
T Consensus 44 ftqGL~~~-~~-~L-yestG~------~g~S~v~~vD~~Tgkv~~~~ 81 (262)
T 3nol_A 44 FTEGFFYR-NG-YF-YESTGL------NGRSSIRKVDIESGKTLQQI 81 (262)
T ss_dssp EEEEEEEE-TT-EE-EEEEEE------TTEEEEEEECTTTCCEEEEE
T ss_pred ccceEEEE-CC-EE-EEECCC------CCCceEEEEECCCCcEEEEE
Confidence 34677888 65 55 444421 45689999999999875443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.52 Score=46.58 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=34.7
Q ss_pred ceEEEEeC-CCC-eeecCCCC----ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 157 AQLVLGSL-DGT-AKDFGTPA----VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 157 ~~l~~~~~-~g~-~~~lt~~~----~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
..|.+.|+ +|+ .+.|.... .+...+|||||+.++..+.... .....-......+.+||+++++.-
T Consensus 203 ~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 203 NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cceeeccCCCcEEEEEECCCCEEE
Confidence 46777788 675 45554322 2335689999998876543211 000000011346788999887644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.63 E-value=1.3 Score=43.62 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=37.5
Q ss_pred eeEEEeccCCCCCCC-eeeeecCCCC-----CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 6 GIGIHRLLPDDSLGP-EKEVHGYPDG-----AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~lt~~~~~-----~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
.|+..+++ +|+ .+.+. ++.. .......++|++..+ |++.... .....|+++|+++|+..++.
T Consensus 94 ~i~~~d~~----tg~~~~~~~-~~~~~~~~~~~~~~v~vd~~~g~~-yvtd~~~-----~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 94 KLVAWDTL----NNQLSRVIY-LPPPITLSNSFVNDLAVDLIHNFV-YISDPAP-----DDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEEEEETT----TTEEEEEEE-CCTTTSCTTCCCCEEEEETTTTEE-EEEECCS-----GGGCEEEEEETTTCCEEEEC
T ss_pred eEEEEECC----CCeEEEEEE-CChhhcccccccceEEEecCCCEE-EEEcCcc-----CCCCeEEEEECCCCCEEEEe
Confidence 46666665 565 33333 3321 135788999987765 4443200 14578999999988876653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.76 Score=43.74 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=76.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
......++|||+ |++ .. .....|++++.++.....+..... . .....+.+++++++++...
T Consensus 122 ~~~~i~~~~~g~-l~v-~~--------~~~~~i~~~~~~g~~~~~~~~~~~--~-~~p~~i~~~~~g~l~v~~~------ 182 (286)
T 1q7f_A 122 HPRGVTVDNKGR-IIV-VE--------CKVMRVIIFDQNGNVLHKFGCSKH--L-EFPNGVVVNDKQEIFISDN------ 182 (286)
T ss_dssp CEEEEEECTTSC-EEE-EE--------TTTTEEEEECTTSCEEEEEECTTT--C-SSEEEEEECSSSEEEEEEG------
T ss_pred CceEEEEeCCCC-EEE-EE--------CCCCEEEEEcCCCCEEEEeCCCCc--c-CCcEEEEECCCCCEEEEEC------
Confidence 467788999996 434 32 234678999976544443321111 0 1145678888888655421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCCC---CceeeeeeCCCCc
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP---AVYTAVEPSPDQK 187 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~~---~~~~~~~~SpDg~ 187 (607)
....|++++.+|+ ...+... .....++++|||+
T Consensus 183 -------------------------------------------~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 183 -------------------------------------------RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp -------------------------------------------GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred -------------------------------------------CCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCC
Confidence 0134555555443 3334322 2345789999985
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
|+++.... ...|.+++.++...+.+.... ....+..+.++|||+
T Consensus 220 -l~v~~~~~-----------~~~i~~~~~~g~~~~~~~~~~-----------~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 220 -ILIADNHN-----------NFNLTIFTQDGQLISALESKV-----------KHAQCFDVALMDDGS 263 (286)
T ss_dssp -EEEEECSS-----------SCEEEEECTTSCEEEEEEESS-----------CCSCEEEEEEETTTE
T ss_pred -EEEEeCCC-----------CEEEEEECCCCCEEEEEcccC-----------CCCcceeEEECCCCc
Confidence 55553211 126889998877666653210 001123588889885
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=3.3 Score=44.79 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=72.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
......|.++++.|+++-. ....|++++++++..+.+...... ....++..+.++.||++. .
T Consensus 38 ~~~~l~~d~~~~~lywtD~---------~~~~I~r~~~~g~~~~~v~~~g~~----~P~GlAvD~~~~~LY~tD-~---- 99 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDI---------SLKTISRAFMNGSALEHVVEFGLD----YPEGMAVDWLGKNLYWAD-T---- 99 (628)
T ss_dssp CEEEEEEETTTTEEEEEET---------TTTEEEEEETTSCSCEEEECSSCS----CCCEEEEETTTTEEEEEE-T----
T ss_pred ceEEEEEECCCCEEEEEEC---------CCCeEEEEECCCCCcEEEEeCCCC----CcceEEEEeCCCEEEEEE-C----
Confidence 4667889999988877642 346899999988766555422111 134556655544444431 0
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCC-eeecCCC--CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~lt~~--~~~~~~~~SpDg~~ 188 (607)
...+|.+++++|. .+.|... ..-..+++.|...+
T Consensus 100 -------------------------------------------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~ 136 (628)
T 4a0p_A 100 -------------------------------------------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGF 136 (628)
T ss_dssp -------------------------------------------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTE
T ss_pred -------------------------------------------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCe
Confidence 1246667777663 2333211 23357889987778
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
|+++.... ...|++.++++...+.+
T Consensus 137 lY~tD~g~-----------~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 137 MYWTEWGG-----------KPKIDRAAMDGSERTTL 161 (628)
T ss_dssp EEEEECSS-----------SCEEEEEETTSCSCEEE
T ss_pred EEEeCCCC-----------CCEEEEEeCCCCceEEE
Confidence 88874321 23788888887765544
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.026 Score=51.04 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=37.3
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
..||.+|++++|.|.+ +. |+||++|+.. +....|... ...+.|+++||.|+. ++.+
T Consensus 10 ~~~g~~l~~~~~~~~~-----~~--~~vv~~hG~~-----------~~~~~~~~~--~~~~~l~~~G~~v~~-~d~~ 65 (207)
T 3bdi_A 10 DVNGTRVFQRKMVTDS-----NR--RSIALFHGYS-----------FTSMDWDKA--DLFNNYSKIGYNVYA-PDYP 65 (207)
T ss_dssp EETTEEEEEEEECCTT-----CC--EEEEEECCTT-----------CCGGGGGGG--THHHHHHTTTEEEEE-ECCT
T ss_pred eeCCcEEEEEEEeccC-----CC--CeEEEECCCC-----------CCccccchH--HHHHHHHhCCCeEEE-EcCC
Confidence 3599999999999986 12 8899888531 111122110 135789999999998 5554
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=61.79 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEEeCCCCc--
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP-- 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl~~~~~~-- 565 (607)
+.|...+. ||.|.+..+++ ++|||||+|+|.|.. |+...| . ...||+ +||+|+. ++.+
T Consensus 95 ~edcl~ln--v~~P~~~~~~~--~~Pv~v~iHGG~~~~--------g~~~~~-----~-~~~la~~~g~vvv~-~nYRlg 155 (542)
T 2h7c_A 95 SEDCLYLN--IYTPADLTKKN--RLPVMVWIHGGGLMV--------GAASTY-----D-GLALAAHENVVVVT-IQYRLG 155 (542)
T ss_dssp ESCCCEEE--EEECSCTTSCC--CEEEEEEECCSTTTS--------CCSTTS-----C-CHHHHHHHTCEEEE-ECCCCH
T ss_pred CCCCcEEE--EEECCCCCCCC--CCCEEEEECCCcccC--------CCcccc-----C-HHHHHhcCCEEEEe-cCCCCc
Confidence 56776665 78898765544 459999999764432 222211 1 234554 8999998 3322
Q ss_pred eeccCCCCch-hhHHHHhhcHHHHHHHHHHh---cccccccc
Q 007338 566 IIGEGLWSNW-FQVQRLLLKKLFDVEWLIQA---ELLLEDTL 603 (607)
Q Consensus 566 ~~g~g~~~~~-~~~~~~~~~~~~~v~~~~~~---~~~~~~~~ 603 (607)
..|.+..... .-+..-+.|++++++||.+. --.|+++|
T Consensus 156 ~~gf~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~V 197 (542)
T 2h7c_A 156 IWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSV 197 (542)
T ss_dssp HHHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred cccCCCCCcccCccchhHHHHHHHHHHHHHHHHHcCCCccce
Confidence 1122211000 00112256889999998664 12477765
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.023 Score=55.91 Aligned_cols=88 Identities=10% Similarity=0.081 Sum_probs=56.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl 559 (607)
..+.+++++.|| .|.+++| |. . + +.|+||++|++-+ +.++...+ ......|+ ..||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~--~--~--~~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ--K--P--DSPVLVYYHGGGF--------VICSIESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES--S--S--SEEEEEEECCSTT--------TSCCTGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC--C--C--CceEEEEECCccc--------ccCChhHh----HHHHHHHHHHhCCEEE
Confidence 578889998898 8999999 42 1 2 3499999986411 11222111 11245677 6899999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. ++. +|.|.... .....|+.++++||.+.
T Consensus 115 ~-~dy--rg~g~~~~----p~~~~d~~~~~~~l~~~ 143 (311)
T 1jji_A 115 S-VDY--RLAPEHKF----PAAVYDCYDATKWVAEN 143 (311)
T ss_dssp E-EEC--CCTTTSCT----THHHHHHHHHHHHHHHT
T ss_pred E-ecC--CCCCCCCC----CCcHHHHHHHHHHHHhh
Confidence 8 443 34444322 23467899999999875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.65 Score=47.76 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=39.0
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....+.++| ++..|++ ... . ..|+++|+++++...+..... ....+.|+++++.+|++
T Consensus 138 ~P~~lavdp~~~g~Lyv-~d~--------~-~~I~~id~~~~~v~~~~~~~~-----~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYL-VGE--------Q-HPTRLIDFEKEYVSTVYSGLS-----KVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEE-EEB--------T-EEEEEEETTTTEEEEEECCCS-----CEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEE-EeC--------C-CcEEEEECCCCEEEEEecCCC-----CcceEEEeCCCCEEEEE
Confidence 356778898 4666544 442 2 789999999888766643211 14578899998866664
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.07 Score=50.58 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=58.3
Q ss_pred ceEEEEEECC--CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEE
Q 007338 481 QKEMIKYQRK--DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 481 ~~e~i~~~s~--DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~V 558 (607)
..+.+++.+. +|.. .+.|++|..... + +.|+||++|+.. +....| ....+.|+++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~-~~~l~~p~~~~~-~--~~p~vv~~HG~~-----------~~~~~~----~~~~~~l~~~G~~v 84 (262)
T 1jfr_A 24 ATSQTSVSSLVASGFG-GGTIYYPTSTAD-G--TFGAVVISPGFT-----------AYQSSI----AWLGPRLASQGFVV 84 (262)
T ss_dssp CEEEEEECTTTCSSSC-CEEEEEESCCTT-C--CEEEEEEECCTT-----------CCGGGT----TTHHHHHHTTTCEE
T ss_pred CccceEecceeccCCC-ceeEEecCCCCC-C--CCCEEEEeCCcC-----------CCchhH----HHHHHHHHhCCCEE
Confidence 5566677665 4543 688899976322 2 349999988530 111111 23467899999999
Q ss_pred EeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHH----hccccccc
Q 007338 559 LAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQ----AELLLEDT 602 (607)
Q Consensus 559 l~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~ 602 (607)
+. ++. .|.|.. ......|+.++++||.+ ...+|.++
T Consensus 85 ~~-~d~--~g~g~~-----~~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 124 (262)
T 1jfr_A 85 FT-IDT--NTTLDQ-----PDSRGRQLLSALDYLTQRSSVRTRVDATR 124 (262)
T ss_dssp EE-ECC--SSTTCC-----HHHHHHHHHHHHHHHHHTSTTGGGEEEEE
T ss_pred EE-eCC--CCCCCC-----CchhHHHHHHHHHHHHhccccccccCccc
Confidence 98 544 344432 22345688899999998 44445444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.02 E-value=1.4 Score=41.61 Aligned_cols=54 Identities=7% Similarity=-0.194 Sum_probs=34.4
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
|...|++ +|+..+-..++. ....-..+++|++|+.+.. ....++++|+++.+..
T Consensus 67 v~~vD~~----Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw---------~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 67 IRKVDIE----SGKTLQQIELGK--RYFGEGISDWKDKIVGLTW---------KNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEECTT----TCCEEEEEECCT--TCCEEEEEEETTEEEEEES---------SSSEEEEEETTTCCEE
T ss_pred EEEEECC----CCcEEEEEecCC--ccceeEEEEeCCEEEEEEe---------eCCEEEEEECccCcEE
Confidence 4444554 666554444443 3444557788998755532 3578999999998764
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.029 Score=53.04 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=54.7
Q ss_pred ceEEEEE-ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKY-QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~-~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+.+.+++ ++.||.+|..+.+.|.+ +. .|+||++|+.. +....+. .....++|+++||.|+
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~--~~----~~~vv~~HG~~-----------~~~~~~~--~~~~~~~l~~~g~~v~ 70 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ--DE----RPTCIWLGGYR-----------SDMTGTK--ALEMDDLAASLGVGAI 70 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS--TT----SCEEEEECCTT-----------CCTTSHH--HHHHHHHHHHHTCEEE
T ss_pred CcceEEEeeccCcceEEEEeccCCC--CC----CCeEEEECCCc-----------cccccch--HHHHHHHHHhCCCcEE
Confidence 5566666 77799999998887653 21 28999988531 1111110 0012467889999999
Q ss_pred eCCCCceeccCCC---CchhhHHHHhhcHHHHHHHHH
Q 007338 560 AGPSIPIIGEGLW---SNWFQVQRLLLKKLFDVEWLI 593 (607)
Q Consensus 560 ~~~~~~~~g~g~~---~~~~~~~~~~~~~~~~v~~~~ 593 (607)
. ++.+. .|.. ....-..++.+|+.+.+++|.
T Consensus 71 ~-~d~~G--~G~s~~~~~~~~~~~~~~d~~~~~~~l~ 104 (270)
T 3llc_A 71 R-FDYSG--HGASGGAFRDGTISRWLEEALAVLDHFK 104 (270)
T ss_dssp E-ECCTT--STTCCSCGGGCCHHHHHHHHHHHHHHHC
T ss_pred E-ecccc--CCCCCCccccccHHHHHHHHHHHHHHhc
Confidence 8 55543 3332 222233566777777777764
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0094 Score=60.71 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=30.1
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
..+++.+..|.. +++ +.|+||+.|+. ++... .+....+.||++||+|+. ++.+
T Consensus 82 ~~~p~~~~~P~~--~~~--~~P~Vv~~HG~------------~~~~~---~~~~~a~~La~~Gy~V~~-~d~~ 134 (383)
T 3d59_A 82 MTTPANWNSPLR--PGE--KYPLVVFSHGL------------GAFRT---LYSAIGIDLASHGFIVAA-VEHR 134 (383)
T ss_dssp CEESSEETCCBC--CSS--CEEEEEEECCT------------TCCTT---TTHHHHHHHHHTTCEEEE-ECCC
T ss_pred eeeccccCCCcc--cCC--CCCEEEEcCCC------------CCCch---HHHHHHHHHHhCceEEEE-eccC
Confidence 344444444432 233 44999998853 11111 111236799999999998 5543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=1.5 Score=41.53 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=42.9
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|...|++ +|+..+-..++. ......++++|++|+.+.. ....++++|+++++...-.....
T Consensus 45 ~v~~iD~~----tg~v~~~i~l~~--~~fgeGi~~~g~~lyv~t~---------~~~~v~viD~~t~~v~~~i~~g~--- 106 (266)
T 2iwa_A 45 SVRQVALQ----TGKVENIHKMDD--SYFGEGLTLLNEKLYQVVW---------LKNIGFIYDRRTLSNIKNFTHQM--- 106 (266)
T ss_dssp EEEEEETT----TCCEEEEEECCT--TCCEEEEEEETTEEEEEET---------TCSEEEEEETTTTEEEEEEECCS---
T ss_pred EEEEEECC----CCCEEEEEecCC--CcceEEEEEeCCEEEEEEe---------cCCEEEEEECCCCcEEEEEECCC---
Confidence 34555555 565554433333 2344467777888655542 35789999999887543221111
Q ss_pred cccccceEEecCCeEEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~ 104 (607)
......++|++.+|.+
T Consensus 107 ---~~g~glt~Dg~~l~vs 122 (266)
T 2iwa_A 107 ---KDGWGLATDGKILYGS 122 (266)
T ss_dssp ---SSCCEEEECSSSEEEE
T ss_pred ---CCeEEEEECCCEEEEE
Confidence 1234455676655553
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.041 Score=54.43 Aligned_cols=82 Identities=5% Similarity=-0.118 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEEeCCCCceeccCCC
Q 007338 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGLW 572 (607)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl~~~~~~~~g~g~~ 572 (607)
.+..+++.|.+ . +.|+||++|++.+. .+....| ......|+ +.||.|+. ++.+ +.+..
T Consensus 83 ~~~~~~~~p~~-~-----~~p~vv~lHGgg~~--------~~~~~~~----~~~~~~la~~~g~~vi~-~D~r--~~~~~ 141 (326)
T 3d7r_A 83 DMQVFRFNFRH-Q-----IDKKILYIHGGFNA--------LQPSPFH----WRLLDKITLSTLYEVVL-PIYP--KTPEF 141 (326)
T ss_dssp TEEEEEEESTT-C-----CSSEEEEECCSTTT--------SCCCHHH----HHHHHHHHHHHCSEEEE-ECCC--CTTTS
T ss_pred CEEEEEEeeCC-C-----CCeEEEEECCCccc--------CCCCHHH----HHHHHHHHHHhCCEEEE-EeCC--CCCCC
Confidence 36778888976 2 23999998864111 0111111 11234566 56999998 4432 22211
Q ss_pred CchhhHHHHhhcHHHHHHHHHHhccccccc
Q 007338 573 SNWFQVQRLLLKKLFDVEWLIQAELLLEDT 602 (607)
Q Consensus 573 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 602 (607)
.+ .....|+.++++||+++ +|.++
T Consensus 142 ---~~-~~~~~d~~~~~~~l~~~--~~~~~ 165 (326)
T 3d7r_A 142 ---HI-DDTFQAIQRVYDQLVSE--VGHQN 165 (326)
T ss_dssp ---CH-HHHHHHHHHHHHHHHHH--HCGGG
T ss_pred ---Cc-hHHHHHHHHHHHHHHhc--cCCCc
Confidence 12 45578999999999988 45554
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.056 Score=51.97 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=35.2
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccC
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~ 522 (607)
..+.+++++. +|.++..+||+|++|+++++| |+|++.|++
T Consensus 17 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~--Pvl~~lhG~ 57 (275)
T 2qm0_A 17 NTEQWKMYSKLEGKEYQIHISKPKQPAPDSGY--PVIYVLDGN 57 (275)
T ss_dssp TEEEEEEECTTTCCEEEEEEECCSSCCCTTCE--EEEEEESHH
T ss_pred CceEEEEEecCCCCEEEEEEECCCCCCCCCCc--cEEEEecCh
Confidence 7899999997 799999999999999887766 999998753
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.039 Score=56.48 Aligned_cols=92 Identities=9% Similarity=-0.158 Sum_probs=51.0
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeE--
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA-- 557 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~-- 557 (607)
+.+.++|.|. .|.++..+||+|++++ +++| |+|++.|++. + .+ ........+.|+++|++
T Consensus 167 ~v~~~~~~S~~~g~~~~~~vy~P~~~~-~~~~--PvlvllHG~~------~--~~------~~~~~~~~~~l~~~g~~~p 229 (403)
T 3c8d_A 167 PAKEIIWKSERLKNSRRVWIFTTGDVT-AEER--PLAVLLDGEF------W--AQ------SMPVWPVLTSLTHRQQLPP 229 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCC--CEEEESSHHH------H--HH------TSCCHHHHHHHHHTTSSCS
T ss_pred ceEEEEEEccccCCcEEEEEEeCCCCC-CCCC--CEEEEeCCHH------H--hh------cCcHHHHHHHHHHcCCCCC
Confidence 6778898876 7889999999999875 3545 9999988521 0 00 00111235789999985
Q ss_pred --EEeCCCCce-eccCCC--CchhhHHHHhhcHHHHHH
Q 007338 558 --VLAGPSIPI-IGEGLW--SNWFQVQRLLLKKLFDVE 590 (607)
Q Consensus 558 --Vl~~~~~~~-~g~g~~--~~~~~~~~~~~~~~~~v~ 590 (607)
|+. ++.+. .++..+ ....+...+.++++..|+
T Consensus 230 ~iVV~-~d~~~~~~r~~~~~~~~~~~~~l~~el~~~i~ 266 (403)
T 3c8d_A 230 AVYVL-IDAIDTTHRAHELPCNADFWLAVQQELLPLVK 266 (403)
T ss_dssp CEEEE-ECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHH
T ss_pred eEEEE-ECCCCCccccccCCChHHHHHHHHHHHHHHHH
Confidence 776 32211 111111 234555556566655444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.45 Score=49.05 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=38.6
Q ss_pred cccceEEccC-CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...+|+|+ ++.||.... ...|.++|+.+++...... . ....+..+.|+|++++|+..
T Consensus 151 ~V~~v~~~p~~~~~las~s~----------Dg~v~iwD~~~~~~~~~~~-~---~~~~v~~v~wspdg~~lasg 210 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCLA----------DGSIAVLQVTETVKVCATL-P---STVAVTSVCWSPKGKQLAVG 210 (434)
T ss_dssp SEEEEEECSSCTTEEEEEET----------TSCEEEEEESSSEEEEEEE-C---GGGCEEEEEECTTSSCEEEE
T ss_pred ceEEEEECCCCCCEEEEEEC----------CCeEEEEEcCCCcceeecc-C---CCCceeEEEEcCCCCEEEEE
Confidence 5889999998 565554432 2568888998875432211 1 11126689999998877764
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.02 Score=58.80 Aligned_cols=92 Identities=14% Similarity=0.051 Sum_probs=53.5
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+.++. +|.+|+++++.|. + + +.|+||++|+.. +....+. ......++++||.|+.
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~~~~--~--~--~~p~vv~~HG~~-----------~~~~~~~---~~~~~~~~~~g~~vi~ 192 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAIISE--D--K--AQDTLIVVGGGD-----------TSREDLF---YMLGYSGWEHDYNVLM 192 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEECCS--S--S--CCCEEEEECCSS-----------CCHHHHH---HHTHHHHHHTTCEEEE
T ss_pred CcEEEEEeE-CCeEEEEEEEcCC--C--C--CCCEEEEECCCC-----------CCHHHHH---HHHHHHHHhCCcEEEE
Confidence 567777775 7889999998432 1 2 239999988520 1111110 0112366789999998
Q ss_pred CCCCceeccCCC--CchhhHHHHhhcHHHHHHHHHHhc
Q 007338 561 GPSIPIIGEGLW--SNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 561 ~~~~~~~g~g~~--~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
++.|.. |.. ....+......|+.+.+++|..++
T Consensus 193 -~D~~G~--G~s~~~~~~~~~~~~~d~~~~~~~l~~~~ 227 (405)
T 3fnb_A 193 -VDLPGQ--GKNPNQGLHFEVDARAAISAILDWYQAPT 227 (405)
T ss_dssp -ECCTTS--TTGGGGTCCCCSCTHHHHHHHHHHCCCSS
T ss_pred -EcCCCC--cCCCCCCCCCCccHHHHHHHHHHHHHhcC
Confidence 555433 322 111111233677888888887754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.89 E-value=3.7 Score=38.20 Aligned_cols=54 Identities=11% Similarity=-0.075 Sum_probs=34.9
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
|...|++ +|+..+-..++.. ...-..+++|++|+-+.. ....++++|+++.+..
T Consensus 45 v~~vD~~----tgkv~~~~~l~~~--~fgeGi~~~~~~ly~ltw---------~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 45 VRKVDLE----TGRILQRAEVPPP--YFGAGIVAWRDRLIQLTW---------RNHEGFVYDLATLTPR 98 (243)
T ss_dssp EEEEETT----TCCEEEEEECCTT--CCEEEEEEETTEEEEEES---------SSSEEEEEETTTTEEE
T ss_pred EEEEECC----CCCEEEEEeCCCC--cceeEEEEeCCEEEEEEe---------eCCEEEEEECCcCcEE
Confidence 4455665 6666555445543 444566778888755542 3578999999998764
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.054 Score=52.20 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCCCceEEEEEEcCCC---CCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 489 RKDGVPLTATLYLPPG---YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~---~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
+.+|.....+.++|.. +-++. -+.||++|+- .+++..| ....+.|+++||.|+. ++.+
T Consensus 27 ~~~~~~~~~~~~~p~~~p~~~~G~---~~~VlllHG~-----------~~s~~~~----~~la~~La~~Gy~Via-~Dl~ 87 (281)
T 4fbl_A 27 SGSGMSTTPLQVLPGAEPLYSVGS---RIGVLVSHGF-----------TGSPQSM----RFLAEGFARAGYTVAT-PRLT 87 (281)
T ss_dssp ----------CCCTTCCCEEECCS---SEEEEEECCT-----------TCCGGGG----HHHHHHHHHTTCEEEE-CCCT
T ss_pred cCCCccccceeecCCCcccccCCC---CceEEEECCC-----------CCCHHHH----HHHHHHHHHCCCEEEE-ECCC
Confidence 3466666666666633 11122 1557777741 0222222 1235799999999999 7764
Q ss_pred eeccCCCC---chhhHHHHhhcHHHHHHHHHHh
Q 007338 566 IIGEGLWS---NWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 566 ~~g~g~~~---~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
|.|... ...-..+...|+.+.+++|.+.
T Consensus 88 --GhG~S~~~~~~~~~~~~~~d~~~~~~~l~~~ 118 (281)
T 4fbl_A 88 --GHGTTPAEMAASTASDWTADIVAAMRWLEER 118 (281)
T ss_dssp --TSSSCHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCccccCCCHHHHHHHHHHHHHHHHhC
Confidence 444431 1112245678888889888654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=93.62 E-value=4.8 Score=39.69 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=25.2
Q ss_pred ceEEEEeC-CCC-eeecCCCC--ceeeeeeCCCCceEEEEEc
Q 007338 157 AQLVLGSL-DGT-AKDFGTPA--VYTAVEPSPDQKYVLITSM 194 (607)
Q Consensus 157 ~~l~~~~~-~g~-~~~lt~~~--~~~~~~~SpDg~~i~~~~~ 194 (607)
..|.+.|+ +|+ ...|.... .+..++|||||++|+-.+.
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 46778888 675 44554332 2335799999999886653
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.069 Score=52.67 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=48.0
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEEeCCCCceecc
Q 007338 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGE 569 (607)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl~~~~~~~~g~ 569 (607)
+|.++ ++|++-. .+ .|+||++|++-| ..++...+ ......|++ .||+|+. ++. ++.
T Consensus 66 ~g~~~----~~p~~~~--~~--~~~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~v~~-~dy--r~~ 122 (322)
T 3k6k_A 66 GGVPC----IRQATDG--AG--AAHILYFHGGGY--------ISGSPSTH----LVLTTQLAKQSSATLWS-LDY--RLA 122 (322)
T ss_dssp TTEEE----EEEECTT--CC--SCEEEEECCSTT--------TSCCHHHH----HHHHHHHHHHHTCEEEE-ECC--CCT
T ss_pred CCEeE----EecCCCC--CC--CeEEEEEcCCcc--------cCCChHHH----HHHHHHHHHhcCCEEEE-eeC--CCC
Confidence 77666 5676522 22 255999886411 11111111 112356665 4999998 443 223
Q ss_pred CCCCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 570 GLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+... + ...++|+.++++||+++++ |.+++
T Consensus 123 ~~~~---~-~~~~~d~~~a~~~l~~~~~-~~~~i 151 (322)
T 3k6k_A 123 PENP---F-PAAVDDCVAAYRALLKTAG-SADRI 151 (322)
T ss_dssp TTSC---T-THHHHHHHHHHHHHHHHHS-SGGGE
T ss_pred CCCC---C-chHHHHHHHHHHHHHHcCC-CCccE
Confidence 2222 2 3457899999999999954 76654
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.085 Score=48.59 Aligned_cols=97 Identities=18% Similarity=0.004 Sum_probs=54.9
Q ss_pred EEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 485 i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
+.+...+|. ..+++.|.+ +.|+||++|+.. +....|. .....|+++||.|+. ++.
T Consensus 5 ~~~~~~~g~--~~~~~~~~~-------~~~~vv~~hG~~-----------~~~~~~~----~~~~~l~~~G~~v~~-~d~ 59 (238)
T 1ufo_A 5 TERLTLAGL--SVLARIPEA-------PKALLLALHGLQ-----------GSKEHIL----ALLPGYAERGFLLLA-FDA 59 (238)
T ss_dssp EEEEEETTE--EEEEEEESS-------CCEEEEEECCTT-----------CCHHHHH----HTSTTTGGGTEEEEE-CCC
T ss_pred ecccccCCE--EEEEEecCC-------CccEEEEECCCc-----------ccchHHH----HHHHHHHhCCCEEEE-ecC
Confidence 344445664 445777875 128999988531 1111121 123578899999998 665
Q ss_pred ceeccCCC--Cchh----------hHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 565 PIIGEGLW--SNWF----------QVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 565 ~~~g~g~~--~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
+..|.-.. .... ......+|+.+.+++|.+.+. +.=-|+-||
T Consensus 60 ~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~i~l~G~S 113 (238)
T 1ufo_A 60 PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFG-LPLFLAGGS 113 (238)
T ss_dssp TTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEET
T ss_pred CCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccC-CcEEEEEEC
Confidence 44332111 1111 235667888999999988776 333344443
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.069 Score=52.20 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceecc
Q 007338 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (607)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~ 569 (607)
.+|.. .+.+++|.+.. +.|+||++|+.. +....| ....+.|+++||.|+. ++. .|.
T Consensus 79 ~~g~~-~~~~~~p~~~~-----~~p~vv~~HG~~-----------~~~~~~----~~~~~~la~~G~~vv~-~d~--~g~ 134 (306)
T 3vis_A 79 ADGFG-GGTIYYPRENN-----TYGAIAISPGYT-----------GTQSSI----AWLGERIASHGFVVIA-IDT--NTT 134 (306)
T ss_dssp CSSSC-CEEEEEESSCS-----CEEEEEEECCTT-----------CCHHHH----HHHHHHHHTTTEEEEE-ECC--SST
T ss_pred cCCCc-ceEEEeeCCCC-----CCCEEEEeCCCc-----------CCHHHH----HHHHHHHHhCCCEEEE-ecC--CCC
Confidence 56655 57888897633 339999988530 111111 1235789999999998 443 334
Q ss_pred CCCCchhhHHHHhhcHHHHHHHHHHh------cccccccc
Q 007338 570 GLWSNWFQVQRLLLKKLFDVEWLIQA------ELLLEDTL 603 (607)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~ 603 (607)
|... .....|+.++++||.+. ..+|.+++
T Consensus 135 g~s~-----~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v 169 (306)
T 3vis_A 135 LDQP-----DSRARQLNAALDYMLTDASSAVRNRIDASRL 169 (306)
T ss_dssp TCCH-----HHHHHHHHHHHHHHHHTSCHHHHTTEEEEEE
T ss_pred CCCc-----chHHHHHHHHHHHHHhhcchhhhccCCcccE
Confidence 4432 22347889999999998 55565553
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.11 Score=50.08 Aligned_cols=65 Identities=8% Similarity=0.083 Sum_probs=39.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.++++. ||..+...++.+..-++ + .|+||++|+.. ++...| ....+.|+++||.|+.
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~--~--~p~vv~~hG~~-----------~~~~~~----~~~~~~l~~~g~~v~~ 78 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPKKA--N--GRTILLMHGKN-----------FCAGTW----ERTIDVLADAGYRVIA 78 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCSSC--C--SCEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE
T ss_pred cceeEEEec-CCCCeeEEEeecCCCCC--C--CCeEEEEcCCC-----------CcchHH----HHHHHHHHHCCCeEEE
Confidence 677788875 66777666665443122 2 28899888531 111111 1235789999999998
Q ss_pred CCCCce
Q 007338 561 GPSIPI 566 (607)
Q Consensus 561 ~~~~~~ 566 (607)
++.+.
T Consensus 79 -~d~~G 83 (315)
T 4f0j_A 79 -VDQVG 83 (315)
T ss_dssp -ECCTT
T ss_pred -eecCC
Confidence 55543
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.14 Score=54.00 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=55.5
Q ss_pred ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC-eEEEeCCCCc-
Q 007338 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSIP- 565 (607)
Q Consensus 488 ~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G-Y~Vl~~~~~~- 565 (607)
.+.|+..+. ++.|.. .++ ++|+|||+|+|.|.. |+.... ....+.||++| ++|+. .+.+
T Consensus 80 ~~edcl~l~--v~~P~~--~~~--~~Pviv~iHGGg~~~--------g~~~~~----~~~~~~la~~~~~vvv~-~nYRl 140 (498)
T 2ogt_A 80 PSEDGLYLN--IWSPAA--DGK--KRPVLFWIHGGAFLF--------GSGSSP----WYDGTAFAKHGDVVVVT-INYRM 140 (498)
T ss_dssp CBSCCCEEE--EEESCS--SSC--CEEEEEEECCSTTTS--------CCTTCG----GGCCHHHHHHHTCEEEE-ECCCC
T ss_pred CCCCCcEEE--EEecCC--CCC--CCcEEEEEcCCccCC--------CCCCCC----cCCHHHHHhCCCEEEEe-CCCcC
Confidence 356777665 556862 333 459999999764332 222111 01246888887 99998 3322
Q ss_pred -eeccCCCC------chhhHHHHhhcHHHHHHHHHHhcc---cccccc
Q 007338 566 -IIGEGLWS------NWFQVQRLLLKKLFDVEWLIQAEL---LLEDTL 603 (607)
Q Consensus 566 -~~g~g~~~------~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 603 (607)
..|.+... ...-+...+.|++.+++||.+.-- .|+++|
T Consensus 141 g~~Gf~~~~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V 188 (498)
T 2ogt_A 141 NVFGFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNI 188 (498)
T ss_dssp HHHHCCCCTTTTCGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred chhhccCchhhccccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 11332221 112223557899999999987621 376664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.39 E-value=5 Score=37.31 Aligned_cols=42 Identities=19% Similarity=0.011 Sum_probs=27.5
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (607)
.........|++ ..|+.+... .+.+.|.++|+++|+..+-..
T Consensus 19 ~~~ftqGL~~~~--~~LyestG~-------~g~S~v~~vD~~tgkv~~~~~ 60 (243)
T 3mbr_X 19 TTAFTEGLFYLR--GHLYESTGE-------TGRSSVRKVDLETGRILQRAE 60 (243)
T ss_dssp TTCCEEEEEEET--TEEEEEECC-------TTSCEEEEEETTTCCEEEEEE
T ss_pred CccccccEEEEC--CEEEEECCC-------CCCceEEEEECCCCCEEEEEe
Confidence 333456778875 465444322 456899999999998765433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=5.4 Score=37.53 Aligned_cols=58 Identities=9% Similarity=-0.027 Sum_probs=36.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
......++|||+ |.+ .. .....|+++|+. ++...+...... ..+..+.+++++++++.
T Consensus 16 ~~~~i~~d~~g~-l~v-~~--------~~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~ 73 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWI-TQ--------HKANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEVWFT 73 (299)
T ss_dssp CEEEEEECTTSC-EEE-EE--------TTTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCEEEE
T ss_pred CccceEECCCCC-EEE-Ee--------cCCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCEEEe
Confidence 578889999997 333 33 224679999998 766554311110 11446777788877665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.30 E-value=6.3 Score=40.32 Aligned_cols=56 Identities=9% Similarity=-0.004 Sum_probs=37.4
Q ss_pred ccceEEccC--CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...+.|+|+ +..|++ +.. . ..|+++|+++|+...+..... ....+.|+++++ |+++
T Consensus 141 P~gvavd~~s~~g~Lyv-~D~--------~-~~I~~id~~~g~v~~~~~~~~-----~P~giavd~dG~-lyVa 198 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYW-VGQ--------R-DAFRHVDFVNQYVDIKTTNIG-----QCADVNFTLNGD-MVVV 198 (433)
T ss_dssp CCEEEECTTTTTCEEEE-ECB--------T-SCEEEEETTTTEEEEECCCCS-----CEEEEEECTTCC-EEEE
T ss_pred CceEEEccccCCCEEEE-EeC--------C-CCEEEEECCCCEEEEeecCCC-----CccEEEECCCCC-EEEE
Confidence 567889995 555544 432 2 789999999898876643111 145788999988 4443
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.081 Score=55.59 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=52.1
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC-eEEEeCCCCc--
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSIP-- 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G-Y~Vl~~~~~~-- 565 (607)
+.|. +...++.|.+- .++ +|+|||+|+|.|.. |+...+ ....+.||++| |+|+. ++.+
T Consensus 79 ~edc--L~l~v~~P~~~--~~~--~PviV~iHGGg~~~--------g~~~~~----~~~~~~la~~g~~vvv~-~nYRlg 139 (489)
T 1qe3_A 79 SEDC--LYVNVFAPDTP--SQN--LPVMVWIHGGAFYL--------GAGSEP----LYDGSKLAAQGEVIVVT-LNYRLG 139 (489)
T ss_dssp CSCC--CEEEEEEECSS--CCS--EEEEEEECCSTTTS--------CCTTSG----GGCCHHHHHHHTCEEEE-ECCCCH
T ss_pred CCCC--CEEEEEeCCCC--CCC--CCEEEEECCCcccc--------CCCCCc----ccCHHHHHhcCCEEEEe-cCccCc
Confidence 3454 45567788762 222 59999999764332 211111 11246788887 99998 3322
Q ss_pred eeccCCC--Cc-hhhHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 566 IIGEGLW--SN-WFQVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 566 ~~g~g~~--~~-~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
..|.+.. .. ......-+.|+.++++||.+.- -.|.++|
T Consensus 140 ~~Gf~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V 183 (489)
T 1qe3_A 140 PFGFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNV 183 (489)
T ss_dssp HHHSCCCTTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred ccccCccccccccCCCCcchHHHHHHHHHHHHHHHHhCCCccee
Confidence 1133221 00 0111233678888999987652 2477764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.78 E-value=2.3 Score=44.26 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=39.3
Q ss_pred ccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEE-------ecCCeEEEEE
Q 007338 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-------VNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W-------spd~~~l~~~ 104 (607)
....+++| ++..| |++.+ ....|+++|++++....+.......++ ....+.| +++++.+|++
T Consensus 141 p~~la~dp~~~~~L-yv~~~--------~~~~i~~ID~~~~~v~~l~~~~~~~~~-~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNKDHL-YICYD--------GHKAIQLIDLKNRMLSSPLNINTIPTN-RIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp EEEEEEETTEEEEE-EEEEE--------TEEEEEEEETTTTEEEEEECCTTSSCS-BEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCEEEEccCCCCEE-EEEEC--------CCCeEEEEECCCCEEEEEEccCccccC-CCcEEEEeecccccCCCCCEEEEE
Confidence 44668898 46665 44432 346799999999988776543321111 1346788 8888755654
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=92.77 E-value=0.11 Score=55.16 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHH--hccCeEEEeCCCCc-
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF--LARRFAVLAGPSIP- 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~l--a~~GY~Vl~~~~~~- 565 (607)
+.|... ..||.|.+..+++ ++|+|||+|+|-|.. |+...+ ....+. +.+|++|+. .+.+
T Consensus 82 ~edcl~--l~v~~P~~~~~~~--~~Pviv~iHGGg~~~--------g~~~~~-----~~~~~~~~~~~g~vvv~-~nYRl 143 (522)
T 1ukc_A 82 SEDCLF--INVFKPSTATSQS--KLPVWLFIQGGGYAE--------NSNANY-----NGTQVIQASDDVIVFVT-FNYRV 143 (522)
T ss_dssp ESCCCE--EEEEEETTCCTTC--CEEEEEEECCSTTTS--------CCSCSC-----CCHHHHHHTTSCCEEEE-ECCCC
T ss_pred CCcCCE--EEEEECCCCCCCC--CCCEEEEECCCcccc--------CCcccc-----CcHHHHHhcCCcEEEEE-ecccc
Confidence 456544 5677898755444 459999999764332 222111 112222 256999998 3321
Q ss_pred -eeccCCCCch---hhHHHHhhcHHHHHHHHHHhcc---cccccc
Q 007338 566 -IIGEGLWSNW---FQVQRLLLKKLFDVEWLIQAEL---LLEDTL 603 (607)
Q Consensus 566 -~~g~g~~~~~---~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 603 (607)
..|++..... ......+.|+.+|++||.+.-- .|+++|
T Consensus 144 g~~Gf~~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v 188 (522)
T 1ukc_A 144 GALGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHI 188 (522)
T ss_dssp HHHHHCCCHHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred cccccccchhccccCCCChhHHHHHHHHHHHHHHHHHcCCCchhE
Confidence 1122221000 0113457899999999977521 376665
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=13 Score=40.09 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=92.0
Q ss_pred ccceEEEEeCCC-Ceee-c--CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCC
Q 007338 155 TTAQLVLGSLDG-TAKD-F--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (607)
Q Consensus 155 ~~~~l~~~~~~g-~~~~-l--t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (607)
....|.++++++ .... + ..-.....++|++++..|+++... ...|++++++++....+.....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~------------~~~I~r~~~~g~~~~~v~~~g~- 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS------------LKTISRAFMNGSALEHVVEFGL- 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC-
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC------------CCeEEEEECCCCCcEEEEeCCC-
Confidence 457889999954 3332 2 222234578999988888888532 2378999998876665543110
Q ss_pred CCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcCC
Q 007338 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDD 309 (607)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~D 309 (607)
..+..++..+.+. .|||... ....+.+.+ ++|...+.+.... .....++..|.
T Consensus 80 -----------~~P~GlAvD~~~~-~LY~tD~-----------~~~~I~v~~---~dG~~~~~l~~~~l~~P~~iavdp~ 133 (628)
T 4a0p_A 80 -----------DYPEGMAVDWLGK-NLYWADT-----------GTNRIEVSK---LDGQHRQVLVWKDLDSPRALALDPA 133 (628)
T ss_dssp -----------SCCCEEEEETTTT-EEEEEET-----------TTTEEEEEE---TTSTTCEEEECSSCCCEEEEEEETT
T ss_pred -----------CCcceEEEEeCCC-EEEEEEC-----------CCCEEEEEe---cCCCcEEEEEeCCCCCcccEEEccC
Confidence 1123345444443 3555421 113444443 3342333333222 23456778875
Q ss_pred CcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
...|++..+.. ..+|+++++++. ..+.+.. .. ..|.. +..+++++.||+...
T Consensus 134 ~G~lY~tD~g~--~~~I~r~~~dG~--~~~~l~~-~~----~~P~G--lalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 134 EGFMYWTEWGG--KPKIDRAAMDGS--ERTTLVP-NV----GRANG--LTIDYAKRRLYWTDL 185 (628)
T ss_dssp TTEEEEEECSS--SCEEEEEETTSC--SCEEEEC-SC----SSEEE--EEEETTTTEEEEEET
T ss_pred CCeEEEeCCCC--CCEEEEEeCCCC--ceEEEEC-CC----CCcce--EEEccccCEEEEEEC
Confidence 43343333322 458999999983 4555542 11 11111 667788888888764
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=92.18 E-value=0.13 Score=54.84 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=51.9
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc------cCeEEEeCC
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA------RRFAVLAGP 562 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~------~GY~Vl~~~ 562 (607)
+.|...+ .+|.|.+..+++ ++|||||+|+|.|..| +...+ ..+.|+. +|++|+. .
T Consensus 102 sedcl~l--~v~~P~~~~~~~--~~Pviv~iHGGg~~~g--------~~~~~------~~~~l~~~~l~~~~~~vvv~-~ 162 (544)
T 1thg_A 102 NEDCLYL--NVFRPAGTKPDA--KLPVMVWIYGGAFVYG--------SSAAY------PGNSYVKESINMGQPVVFVS-I 162 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTC--CEEEEEEECCCTTCCS--------GGGGC------CSHHHHHHHHHTTCCCEEEE-E
T ss_pred CCCCeEE--EEEeCCCCCCCC--CCcEEEEECCCccccC--------Ccccc------CchHHHHHHhhcCCCEEEEe-C
Confidence 5566655 577898755444 4599999997643322 11111 1133333 4799998 3
Q ss_pred CCceeccCCCCchh-----hHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 563 SIPIIGEGLWSNWF-----QVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 563 ~~~~~g~g~~~~~~-----~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
+.+-...|.-.... -+..-+.|+++|++||.+.- -.|+++|
T Consensus 163 nYRl~~~gf~~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~V 211 (544)
T 1thg_A 163 NYRTGPFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKV 211 (544)
T ss_dssp CCCCHHHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred CCCCCcccCCCcccccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 32100011111111 11234789999999998751 1477765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=4.2 Score=39.37 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=33.0
Q ss_pred ceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 157 AQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 157 ~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..|++++. +++.+.+... .....++++|||+.|+++... ...|+++++++.
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~------------~~~I~~~~~~~~ 217 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL------------SHQIVKYWLEGP 217 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG------------GTEEEEEESSST
T ss_pred ceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC------------CCeEEEEECCCC
Confidence 57888888 4554443211 122468999999988887532 236888888753
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=92.11 E-value=0.18 Score=53.75 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEEeCCCCc--
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP-- 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl~~~~~~-- 565 (607)
+.|...+. +|.|.+ .+++ ++|+|||+|+|.|.. |+.... ....+.||+ +|++|+. ++.+
T Consensus 93 ~edcl~l~--v~~P~~-~~~~--~~Pviv~iHGGg~~~--------g~~~~~----~~~~~~la~~~g~vvv~-~nYRlg 154 (543)
T 2ha2_A 93 SEDCLYLN--VWTPYP-RPAS--PTPVLIWIYGGGFYS--------GAASLD----VYDGRFLAQVEGAVLVS-MNYRVG 154 (543)
T ss_dssp ESCCCEEE--EEEESS-CCSS--CEEEEEEECCSTTTC--------CCTTSG----GGCTHHHHHHHCCEEEE-ECCCCH
T ss_pred CCcCCeEE--EeecCC-CCCC--CCeEEEEECCCcccc--------CCCCCC----cCChHHHHhcCCEEEEE-eccccc
Confidence 56877765 446765 2233 459999999764332 211110 112356776 7999998 3322
Q ss_pred eeccCCC-C-chhhHHHHhhcHHHHHHHHHHhcc---cccccc
Q 007338 566 IIGEGLW-S-NWFQVQRLLLKKLFDVEWLIQAEL---LLEDTL 603 (607)
Q Consensus 566 ~~g~g~~-~-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 603 (607)
..|++.. . ...-...-+.|+++|++|+.+.-- .|+++|
T Consensus 155 ~~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v 197 (543)
T 2ha2_A 155 TFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSV 197 (543)
T ss_dssp HHHHCCCTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred ccccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhhe
Confidence 1122211 0 000112347889999999987521 477765
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.1 Score=55.65 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=43.1
Q ss_pred CCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce--eccCCCCc-hhhHHHHhhcHHHHH
Q 007338 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI--IGEGLWSN-WFQVQRLLLKKLFDV 589 (607)
Q Consensus 513 lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~--~g~g~~~~-~~~~~~~~~~~~~~v 589 (607)
+|||||+|+|.|.. |+.... ....+.|+++|++|+. ++.+- .|....+. ..-+..-+.|+..|+
T Consensus 115 ~Pviv~iHGGg~~~--------g~~~~~----~~~~~~l~~~g~vvv~-~nYRl~~~Gf~~~~~~~~~~n~gl~D~~~al 181 (551)
T 2fj0_A 115 LPVLVFIHGGGFAF--------GSGDSD----LHGPEYLVSKDVIVIT-FNYRLNVYGFLSLNSTSVPGNAGLRDMVTLL 181 (551)
T ss_dssp EEEEEEECCSTTTS--------CCSCTT----TCBCTTGGGGSCEEEE-ECCCCHHHHHCCCSSSSCCSCHHHHHHHHHH
T ss_pred CCEEEEEcCCcccc--------CCCccc----ccCHHHHHhCCeEEEE-eCCcCCccccccCcccCCCCchhHHHHHHHH
Confidence 59999999764332 222110 1124678899999998 33221 12111100 001123478899999
Q ss_pred HHHHHhc---ccccccc
Q 007338 590 EWLIQAE---LLLEDTL 603 (607)
Q Consensus 590 ~~~~~~~---~~~~~~~ 603 (607)
+||.+.- =.|.++|
T Consensus 182 ~wv~~~i~~fggDp~~v 198 (551)
T 2fj0_A 182 KWVQRNAHFFGGRPDDV 198 (551)
T ss_dssp HHHHHHTGGGTEEEEEE
T ss_pred HHHHHHHHHhCCChhhE
Confidence 9998751 1376664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.82 E-value=5.4 Score=40.76 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEe
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Ws 95 (607)
++..+.+. ........+.|+|+|++|++.-.... .....+++++..++-. +.+..... ...+.++
T Consensus 168 ~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~-----~~~~~v~~~~~~g~~~~~~~l~~~~~------p~giavd 234 (430)
T 3tc9_A 168 KEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNN-----NDRPNNYILTRESGFKVITELTKGQN------CNGAETH 234 (430)
T ss_dssp TTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSC-----TTSEEEEEEEGGGTSCSEEEEEECSS------CCCEEEC
T ss_pred CCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCC-----cccceEEEEeCCCceeeeeeeccCCC------ceEEEEe
Confidence 44444443 23335778899999997666543210 1233566677654322 22221111 3466778
Q ss_pred c-CCeEEEE
Q 007338 96 N-NSTLLIF 103 (607)
Q Consensus 96 p-d~~~l~~ 103 (607)
| ++.+++.
T Consensus 235 p~~g~lyv~ 243 (430)
T 3tc9_A 235 PINGELYFN 243 (430)
T ss_dssp TTTCCEEEE
T ss_pred CCCCEEEEE
Confidence 8 4665554
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=91.68 E-value=0.085 Score=56.60 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=52.7
Q ss_pred EEECCCCceEEEEEEcCCCCC-CCCCCCCCEEEEeccCCccCcccCCccccCCC--cCCCCCCchhHHHhcc-CeEEEeC
Q 007338 486 KYQRKDGVPLTATLYLPPGYD-QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN--EFSGMTPTSSLIFLAR-RFAVLAG 561 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~-~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~--~~~~~~~~~~q~la~~-GY~Vl~~ 561 (607)
.+.+.|...+. +|.|.+.. +++ ++|||||+|+|-|.. |+.. .+........+.||++ |++|+.
T Consensus 74 ~~~sedcl~ln--v~~P~~~~~~~~--~~PV~v~iHGGg~~~--------Gs~~~~~~~~~~~~~~~~la~~~~vvvV~- 140 (579)
T 2bce_A 74 TYGNEDCLYLN--IWVPQGRKEVSH--DLPVMIWIYGGAFLM--------GASQGANFLSNYLYDGEEIATRGNVIVVT- 140 (579)
T ss_dssp EESCSCCCEEE--EEEEECSSSCCC--SEEEEEECCCCSEEE--------C-------CTTGGGCCHHHHHHHTCEEEE-
T ss_pred CCCCCCCCEEE--EEECCCCCCCCC--CCeEEEEECCCcccC--------CCCCccccccccccChHHHhcCCCEEEEE-
Confidence 34466776664 66787643 333 459999999874432 2221 1100000112556665 699997
Q ss_pred CCCc--eeccCCCCchhh-HHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 562 PSIP--IIGEGLWSNWFQ-VQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 562 ~~~~--~~g~g~~~~~~~-~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
.+.+ ..|........+ +..-+.|+.+|++||.+.- =.|.++|
T Consensus 141 ~nYRLg~~Gfl~~~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~V 188 (579)
T 2bce_A 141 FNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQI 188 (579)
T ss_dssp ECCCCHHHHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred eCCccccccCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccE
Confidence 3321 112211100001 1123679999999997641 1376664
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=5.8 Score=39.31 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=84.8
Q ss_pred eEEEeccCCCCCCCeeeee--cC-CC--CCcccceEEcc--CCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc
Q 007338 7 IGIHRLLPDDSLGPEKEVH--GY-PD--GAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt--~~-~~--~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (607)
||+.+++. ++++.++|. +. +. ........+-+ ||+.-+|+++.... .....||.++.+++....+..
T Consensus 85 I~~~d~~~--~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~----~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 85 ILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS----SSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp EEEEETTS--SSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT----CCEEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCC--CCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC----CCeEEEEEEECCCCEEEEEec
Confidence 78877652 334555554 21 11 11234444444 68766777765311 345678888888776655544
Q ss_pred CCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceE
Q 007338 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (607)
Q Consensus 80 ~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (607)
.....++ ...+....++|++++....-- +. .. .+.... .. ......|
T Consensus 159 ~~g~~~~-~pND~~v~~~G~fyvt~~~~f------------------td-~~---~~~~e~-~~---------~~~~g~v 205 (355)
T 3sre_A 159 IRHKLLP-SVNDIVAVGPEHFYATNDHYF------------------ID-PY---LKSWEM-HL---------GLAWSFV 205 (355)
T ss_dssp ECCTTCS-SEEEEEEEETTEEEEEESCSC------------------SS-HH---HHHHHH-HT---------TCCCEEE
T ss_pred cccCCCC-CCceEEEeCCCCEEecCCcEe------------------CC-cc---cccchh-hc---------cCCccEE
Confidence 3332222 234677788888776531000 00 00 000000 00 0124678
Q ss_pred EEEeCCCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 160 VLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 160 ~~~~~~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
|.++. ++.+.+... ..-..++||||+++++++... ...|++++++
T Consensus 206 yr~d~-~~~~~~~~~l~~pNGia~spDg~~lYvadt~------------~~~I~~~~~~ 251 (355)
T 3sre_A 206 TYYSP-NDVRVVAEGFDFANGINISPDGKYVYIAELL------------AHKIHVYEKH 251 (355)
T ss_dssp EEECT-TCCEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEEC
T ss_pred EEEEC-CeEEEeecCCcccCcceECCCCCEEEEEeCC------------CCeEEEEEEC
Confidence 88875 444444322 234589999999999988542 2378888875
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=90.97 E-value=0.55 Score=49.86 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEEeCCCCce-
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPI- 566 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl~~~~~~~- 566 (607)
+.|...+. ++.|.... + ++|||||+|+|.|.. |+.... ....+.|| .+|++|+. .+.+-
T Consensus 91 sedcl~ln--v~~P~~~~--~--~~Pv~v~iHGG~~~~--------g~~~~~----~~~~~~la~~~~~vvv~-~nYRlg 151 (537)
T 1ea5_A 91 SEDCLYLN--IWVPSPRP--K--STTVMVWIYGGGFYS--------GSSTLD----VYNGKYLAYTEEVVLVS-LSYRVG 151 (537)
T ss_dssp CSCCCEEE--EEECSSCC--S--SEEEEEEECCSTTTC--------CCTTCG----GGCTHHHHHHHTCEEEE-CCCCCH
T ss_pred CCcCCeEE--EeccCCCC--C--CCeEEEEECCCcccC--------CCCCCC----ccChHHHHhcCCEEEEE-eccCcc
Confidence 56777664 45686532 3 459999999764432 222110 01235677 78999998 44321
Q ss_pred -eccCC---CCchhhHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 567 -IGEGL---WSNWFQVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 567 -~g~g~---~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
.|... ... .-+-.-+.|++.|++|+.+.- =.|+++|
T Consensus 152 ~~Gf~~~~~~~~-~~~n~gl~D~~~al~wv~~ni~~fggdp~~v 194 (537)
T 1ea5_A 152 AFGFLALHGSQE-APGNVGLLDQRMALQWVHDNIQFFGGDPKTV 194 (537)
T ss_dssp HHHHCCCTTCSS-SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred ccccccCCCCCC-CcCccccHHHHHHHHHHHHHHHHhCCCccce
Confidence 12111 110 011234789999999998762 1376664
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.19 Score=48.40 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=32.0
Q ss_pred ceEEEEEECCC-CceEEEEEEcCCCCCCCCCCCCCEEEEec
Q 007338 481 QKEMIKYQRKD-GVPLTATLYLPPGYDQSKDGPLPCLFWAY 520 (607)
Q Consensus 481 ~~e~i~~~s~D-G~~i~g~l~~P~~~~~~k~y~lP~iv~~y 520 (607)
..+.+++.+.+ |.++..+||+|++|+++++| |||++.|
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~~~y--Pvly~l~ 50 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGY--PILYMLD 50 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCE--EEEEESS
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCCCCC--CEEEEee
Confidence 78889999987 68999999999999887766 9876544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=90.69 E-value=2.2 Score=40.32 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=15.1
Q ss_pred ceeeeeeCCCCceEEEEE
Q 007338 176 VYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~ 193 (607)
....++++|++++|+++.
T Consensus 236 vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEcCCCCEEEEeC
Confidence 446899999999998875
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=90.53 E-value=0.8 Score=43.84 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=39.4
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+.+.++|.|. +|.++..+ |+|++ . |+||+.|+.. +. +....|... ....++++++||+|+
T Consensus 10 ~~~~~~~~S~~~~~~~~~~-~~P~~----~----p~vvllHG~~------~~---~~~~~w~~~-~~~~~~~~~~~~~vv 70 (280)
T 1r88_A 10 PYENLMVPSPSMGRDIPVA-FLAGG----P----HAVYLLDAFN------AG---PDVSNWVTA-GNAMNTLAGKGISVV 70 (280)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS----S----SEEEEECCSS------CC---SSSCHHHHT-SCHHHHHTTSSSEEE
T ss_pred CEEEEEEECcccCCcceEE-EeCCC----C----CEEEEECCCC------CC---CChhhhhhc-ccHHHHHhcCCeEEE
Confidence 6788999876 78999999 78875 1 7888888531 00 001111110 112478889999999
Q ss_pred e
Q 007338 560 A 560 (607)
Q Consensus 560 ~ 560 (607)
.
T Consensus 71 ~ 71 (280)
T 1r88_A 71 A 71 (280)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=90.52 E-value=4.9 Score=37.89 Aligned_cols=46 Identities=9% Similarity=-0.033 Sum_probs=28.9
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
+|+..+-. ++. ....-..+++|++|+.+.. ....++++|+++.+..
T Consensus 84 Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~ltw---------~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 84 SAQPVWME-RLG--NIFAEGLASDGERLYQLTW---------TEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CSSCSEEE-ECT--TCCEEEEEECSSCEEEEES---------SSCEEEEEETTTTEEE
T ss_pred CCcEEeEE-CCC--CcceeEEEEeCCEEEEEEc---------cCCEEEEEECCcCcEE
Confidence 45443333 443 2334456788998755532 3578999999998764
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.058 Score=48.88 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=37.2
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCcee
Q 007338 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (607)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (607)
.||.+|+.+++.|.+ . +.. |+||++|+.. +....|... .....|+++||.|+. ++.+..
T Consensus 14 ~~g~~l~~~~~~p~~-~--~~~--~~vv~~hG~~-----------~~~~~~~~~--~~~~~l~~~G~~v~~-~d~~g~ 72 (210)
T 1imj_A 14 VQGQALFFREALPGS-G--QAR--FSVLLLHGIR-----------FSSETWQNL--GTLHRLAQAGYRAVA-IDLPGL 72 (210)
T ss_dssp ETTEEECEEEEECSS-S--CCS--CEEEECCCTT-----------CCHHHHHHH--THHHHHHHTTCEEEE-ECCTTS
T ss_pred eCCeEEEEEEeCCCC-C--CCC--ceEEEECCCC-----------Cccceeecc--hhHHHHHHCCCeEEE-ecCCCC
Confidence 489999999999975 2 122 8999887531 111111100 025689999999998 555433
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.28 Score=52.12 Aligned_cols=95 Identities=16% Similarity=0.309 Sum_probs=51.8
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh------ccCeEEEeCC
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL------ARRFAVLAGP 562 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la------~~GY~Vl~~~ 562 (607)
+.|...+ .+|.|.+..+++ ++|||||+|+|-|.. |+...+ . .+.|+ .+|++|+. +
T Consensus 94 sedcl~l--~v~~P~~~~~~~--~~Pv~v~iHGGg~~~--------g~~~~~-----~-~~~l~~~~~~~~~~~vvv~-~ 154 (534)
T 1llf_A 94 SEDCLTI--NVVRPPGTKAGA--NLPVMLWIFGGGFEI--------GSPTIF-----P-PAQMVTKSVLMGKPIIHVA-V 154 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTC--CEEEEEEECCSTTTS--------CCGGGS-----C-CHHHHHHHHHTTCCCEEEE-E
T ss_pred CCCCeEE--EEEECCCCCCCC--CceEEEEEeCCCccc--------CCCccc-----C-chHHHHHHHhcCCCEEEEE-e
Confidence 4565554 677898755444 459999999764332 222111 1 12333 35899998 3
Q ss_pred CCceec-cCCCCchh-----hHHHHhhcHHHHHHHHHHh---cccccccc
Q 007338 563 SIPIIG-EGLWSNWF-----QVQRLLLKKLFDVEWLIQA---ELLLEDTL 603 (607)
Q Consensus 563 ~~~~~g-~g~~~~~~-----~~~~~~~~~~~~v~~~~~~---~~~~~~~~ 603 (607)
+.+- | .|.-.... -.-.-+.|+.+|++||.+. --.|+++|
T Consensus 155 nYRl-~~~gf~~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~V 203 (534)
T 1llf_A 155 NYRV-ASWGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKV 203 (534)
T ss_dssp CCCC-HHHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred CCCC-CCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHhCCCcccE
Confidence 3210 1 11101111 1123478999999999774 11477665
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=89.67 E-value=0.27 Score=45.41 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=31.0
Q ss_pred hHHHhccCeEEEeCCCCceeccCCCCc----hh-hHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIFLARRFAVLAGPSIPIIGEGLWSN----WF-QVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g~g~~~~----~~-~~~~~~~~~~~~v~~~~~~ 595 (607)
.+.|+++||.|+. ++.+. .|.... .. ......+|+.+.+++|..+
T Consensus 42 ~~~l~~~G~~v~~-~d~~g--~g~s~~~~~~~~~~~~~~~~d~~~~i~~l~~~ 91 (251)
T 3dkr_A 42 ARALQRSGYGVYV-PLFSG--HGTVEPLDILTKGNPDIWWAESSAAVAHMTAK 91 (251)
T ss_dssp HHHHHHTTCEEEE-CCCTT--CSSSCTHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEe-cCCCC--CCCCChhhhcCcccHHHHHHHHHHHHHHHHHh
Confidence 5789999999998 66543 443311 11 2355678888999998876
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=88.99 E-value=5 Score=44.00 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=85.6
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc--------ee
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--------AK 75 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--------~~ 75 (607)
.+.+|+.++. ++.++.++|. ++. ...+.++++|..++++.......+..-.+..|+++|++++. .+
T Consensus 268 ~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 268 NYDNYILDTK--YKNLKLQKIN-MPS---DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp CEEEEEEECS--SSSCEEEECC-SCT---TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred ceeEEEEcCC--CCCCcceEee-cCC---cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 4678888864 2345556663 443 33456777775544443210000000135679999998642 23
Q ss_pred e-cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeee
Q 007338 76 P-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (607)
Q Consensus 76 ~-lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 154 (607)
. ++...+ ..+..+.|+.+ .+++.....
T Consensus 342 ~~~~~~~~----~~l~~~~~~~~-~l~~~~~~~----------------------------------------------- 369 (711)
T 4hvt_A 342 ILFTPTAN----EVFNFISTTKD-RVFLATYDN----------------------------------------------- 369 (711)
T ss_dssp EEECCCTT----EEEEEEEECSS-CEEEEEEET-----------------------------------------------
T ss_pred EEECCCCC----CeEEEEEEECC-EEEEEEEEC-----------------------------------------------
Confidence 3 332222 12557788765 454442100
Q ss_pred ccceEEEEeC-CC--Ceee-cCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEecc
Q 007338 155 TTAQLVLGSL-DG--TAKD-FGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (607)
Q Consensus 155 ~~~~l~~~~~-~g--~~~~-lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (607)
...+|+++++ +| +.++ +.-+ ..+..+..++++..+++..... . .+..+|.+|+. ++.+.|..
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~----~-----~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENS----I-----VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECS----S-----SCCEEEEECTT-SCEEEEEC
T ss_pred CEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecC----C-----CCCEEEEEeCC-CcEEEEec
Confidence 1346777777 55 3444 4332 3445567788988888775421 1 14689999998 77777765
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=88.72 E-value=0.44 Score=50.52 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEEeCCCCc--
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP-- 565 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl~~~~~~-- 565 (607)
+.|...+. +|.|.... + ++|||||+|+|-|.. |+.... ....+.||+ +|++|+. .+.+
T Consensus 89 ~edcl~ln--v~~P~~~~--~--~~Pv~v~iHGGg~~~--------g~~~~~----~~~~~~la~~~~~vvv~-~nYRlg 149 (529)
T 1p0i_A 89 SEDCLYLN--VWIPAPKP--K--NATVLIWIYGGGFQT--------GTSSLH----VYDGKFLARVERVIVVS-MNYRVG 149 (529)
T ss_dssp CSCCCEEE--EEEESSCC--S--SEEEEEEECCSTTTS--------CCTTCG----GGCTHHHHHHHCCEEEE-ECCCCH
T ss_pred CCcCCeEE--EeeCCCCC--C--CCeEEEEECCCcccc--------CCCCcc----ccChHHHhccCCeEEEE-eccccc
Confidence 56766664 56786532 3 359999999764332 221110 012356776 7999998 3322
Q ss_pred eeccCC---CCchhhHHHHhhcHHHHHHHHHHh----cccccccc
Q 007338 566 IIGEGL---WSNWFQVQRLLLKKLFDVEWLIQA----ELLLEDTL 603 (607)
Q Consensus 566 ~~g~g~---~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~ 603 (607)
..|.+. ... .-+-.-+.|++.|++|+.+. | .|+++|
T Consensus 150 ~~Gf~~~~~~~~-~~~n~gl~D~~~al~wv~~~i~~fg-gdp~~v 192 (529)
T 1p0i_A 150 ALGFLALPGNPE-APGNMGLFDQQLALQWVQKNIAAFG-GNPKSV 192 (529)
T ss_dssp HHHHCCCTTCTT-SCSCHHHHHHHHHHHHHHHHGGGGT-EEEEEE
T ss_pred ccccccCCCCCC-CcCcccHHHHHHHHHHHHHHHHHhC-CChhhe
Confidence 112211 110 11123478889999999775 3 377665
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=88.67 E-value=0.23 Score=47.16 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=27.1
Q ss_pred hHHH----hccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIF----LARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~l----a~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
.+.| +++||.|+. ++.+ +.+... + .....|+.++++||+++
T Consensus 66 ~~~L~~~a~~~g~~vi~-~d~r--~~~~~~---~-~~~~~d~~~~~~~l~~~ 110 (273)
T 1vkh_A 66 ANTIKSMDTESTVCQYS-IEYR--LSPEIT---N-PRNLYDAVSNITRLVKE 110 (273)
T ss_dssp HHHHHHHCTTCCEEEEE-ECCC--CTTTSC---T-THHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCcEEEE-eecc--cCCCCC---C-CcHHHHHHHHHHHHHHh
Confidence 3566 689999998 4432 222211 1 24577899999999987
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=16 Score=34.14 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=62.9
Q ss_pred eEEEEeCCCCeeecCC---CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 158 QLVLGSLDGTAKDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 158 ~l~~~~~~g~~~~lt~---~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
.|++++.+|+...+.. ......+.++||| .|++.... ...|++++. +++...+.. +.
T Consensus 121 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~------------~~~i~~~~~-~g~~~~~~~-~~----- 180 (299)
T 2z2n_A 121 RIGRITDDGKIREYELPNKGSYPSFITLGSDN-ALWFTENQ------------NNAIGRITE-SGDITEFKI-PT----- 180 (299)
T ss_dssp EEEEECTTCCEEEEECSSTTCCEEEEEECTTS-CEEEEETT------------TTEEEEECT-TCCEEEEEC-SS-----
T ss_pred eEEEECCCCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCC------------CCEEEEEcC-CCcEEEeeC-CC-----
Confidence 4555555444333211 1234578899998 45555421 236889998 565554321 00
Q ss_pred cccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee--cCcccceeeEcCCCcE
Q 007338 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLA 312 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~--~~~~~~~~~ws~Dg~~ 312 (607)
....+..+..+++|. + |+.... ...++.++ + +| +...+.. .......+.++++|..
T Consensus 181 -----~~~~~~~i~~~~~g~--l-~v~~~~----------~~~i~~~~--~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 181 -----PASGPVGITKGNDDA--L-WFVEII----------GNKIGRIT--T-SG-EITEFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp -----TTCCEEEEEECTTSS--E-EEEETT----------TTEEEEEC--T-TC-CEEEEECSSTTCCEEEEEECSTTCE
T ss_pred -----CCCcceeEEECCCCC--E-EEEccC----------CceEEEEC--C-CC-cEEEEECCCCCCCceeEEECCCCCE
Confidence 001123466777765 3 332211 12344443 2 32 2222211 1123456778888875
Q ss_pred EEEEEeccccceEEEEEcCC
Q 007338 313 LVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~ 332 (607)
++... ....|+++|++
T Consensus 239 ~v~~~----~~~~i~~~d~~ 254 (299)
T 2z2n_A 239 WFTEW----GANKIGRLTSN 254 (299)
T ss_dssp EEEET----TTTEEEEEETT
T ss_pred EEecc----CCceEEEECCC
Confidence 55432 12478888874
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.8 Score=42.86 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
..||.+|....+.|.+ . |+||++|+.. ++...| ....+.|+++||.|+. ++.+.
T Consensus 10 ~~~g~~l~~~~~g~~~------~--~~vv~~hG~~-----------~~~~~~----~~~~~~l~~~G~~v~~-~d~~G 63 (286)
T 3qit_A 10 EFGGNQICLCSWGSPE------H--PVVLCIHGIL-----------EQGLAW----QEVALPLAAQGYRVVA-PDLFG 63 (286)
T ss_dssp EETTEEEEEEEESCTT------S--CEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE-ECCTT
T ss_pred ecCCceEEEeecCCCC------C--CEEEEECCCC-----------cccchH----HHHHHHhhhcCeEEEE-ECCCC
Confidence 3589999999886532 2 7888887531 111111 1235789999999998 55543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=87.71 E-value=25 Score=35.41 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=29.0
Q ss_pred ceEEEEeC-CCCe-eecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 157 AQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 157 ~~l~~~~~-~g~~-~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
..|.++++ +++. ..+.. ...+..+.+ |++.|+....+ ..|.+||+.+++..
T Consensus 219 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-------------g~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-------------FMVKVWDPETETCL 272 (445)
T ss_dssp SEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT-------------SCEEEEEGGGTEEE
T ss_pred CEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC-------------CEEEEEECCCCcEe
Confidence 35556666 4432 22322 233445566 78888776532 36889998866543
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=1.4 Score=46.36 Aligned_cols=84 Identities=14% Similarity=-0.070 Sum_probs=50.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+...++..||.+|+....- +. |+||++|+.. ++...| ....+.|+++||.|+.
T Consensus 236 ~~~~~~~~~~dg~~l~~~~~g--------~~--p~vv~~HG~~-----------~~~~~~----~~~~~~l~~~G~~v~~ 290 (555)
T 3i28_A 236 DMSHGYVTVKPRVRLHFVELG--------SG--PAVCLCHGFP-----------ESWYSW----RYQIPALAQAGYRVLA 290 (555)
T ss_dssp GSEEEEEEEETTEEEEEEEEC--------SS--SEEEEECCTT-----------CCGGGG----TTHHHHHHHTTCEEEE
T ss_pred ccceeEEEeCCCcEEEEEEcC--------CC--CEEEEEeCCC-----------CchhHH----HHHHHHHHhCCCEEEE
Confidence 556667777899999866541 12 8888887531 111112 2236789999999998
Q ss_pred CCCCceeccCCC---C-chhh-HHHHhhcHHHHHHHH
Q 007338 561 GPSIPIIGEGLW---S-NWFQ-VQRLLLKKLFDVEWL 592 (607)
Q Consensus 561 ~~~~~~~g~g~~---~-~~~~-~~~~~~~~~~~v~~~ 592 (607)
++.+. .|.. . ...+ ...+.+|+.+.++.+
T Consensus 291 -~D~~G--~G~S~~~~~~~~~~~~~~~~d~~~~~~~l 324 (555)
T 3i28_A 291 -MDMKG--YGESSAPPEIEEYCMEVLCKEMVTFLDKL 324 (555)
T ss_dssp -ECCTT--STTSCCCSCGGGGSHHHHHHHHHHHHHHH
T ss_pred -ecCCC--CCCCCCCCCcccccHHHHHHHHHHHHHHc
Confidence 55543 3333 1 1122 355566666666665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=87.03 E-value=21 Score=33.96 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=26.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (607)
......++|||+ | |++... .....|+.++.++|+.+.+..
T Consensus 73 ~p~gia~~~dG~-l-~vad~~------~~~~~v~~~d~~~g~~~~~~~ 112 (306)
T 2p4o_A 73 KVSGLAFTSNGD-L-VATGWN------ADSIPVVSLVKSDGTVETLLT 112 (306)
T ss_dssp EEEEEEECTTSC-E-EEEEEC------TTSCEEEEEECTTSCEEEEEE
T ss_pred CceeEEEcCCCc-E-EEEecc------CCcceEEEEcCCCCeEEEEEe
Confidence 466788999998 4 334321 123468899988888776643
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=86.99 E-value=0.88 Score=45.13 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=47.6
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc-------
Q 007338 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP------- 565 (607)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~------- 565 (607)
..+...||+|.+-. .|.|+||.++.+ ++...+||+|+. .+..
T Consensus 90 ~~~~~~i~lP~~~~----~p~Pvii~i~~~--------------------------~~~~~~G~a~~~-~~~~~v~~~~~ 138 (375)
T 3pic_A 90 ISFTVTITYPSSGT----APYPAIIGYGGG--------------------------SLPAPAGVAMIN-FNNDNIAAQVN 138 (375)
T ss_dssp EEEEEEEECCSSSC----SSEEEEEEETTC--------------------------SSCCCTTCEEEE-ECHHHHSCCSS
T ss_pred eEEEEEEECCCCCC----CCccEEEEECCC--------------------------ccccCCCeEEEE-ecccccccccC
Confidence 36899999998532 356999976421 122458999986 2211
Q ss_pred --eeccCCCCc------hhhHHHHh---hcHHHHHHHHHHhc--ccccccc
Q 007338 566 --IIGEGLWSN------WFQVQRLL---LKKLFDVEWLIQAE--LLLEDTL 603 (607)
Q Consensus 566 --~~g~g~~~~------~~~~~~~~---~~~~~~v~~~~~~~--~~~~~~~ 603 (607)
++|+|. +. ..| ..+. =+++++|++|..+. -||.+++
T Consensus 139 ~gs~g~g~-f~~ly~~~~~~-gal~awaWg~~raid~L~~~~~~~VD~~RI 187 (375)
T 3pic_A 139 TGSRGQGK-FYDLYGSSHSA-GAMTAWAWGVSRVIDALELVPGARIDTTKI 187 (375)
T ss_dssp GGGTTCSH-HHHHHCTTCSC-CHHHHHHHHHHHHHHHHHHCGGGCEEEEEE
T ss_pred CCCcccee-cccccCCccch-HHHHHHHHHHHHHHHHHHhCCccCcChhhE
Confidence 112221 11 111 1221 26899999999998 8899986
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=86.64 E-value=0.56 Score=44.09 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=31.7
Q ss_pred EEEEcCCCCCC-CCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 497 ATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 497 g~l~~P~~~~~-~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
+.||+|.+... ++ +.|+||++|+.. +....| ....+.|+++||.|+. ++.+
T Consensus 34 ~~~~~p~~~~~~g~--~~p~vv~~HG~~-----------~~~~~~----~~~~~~l~~~G~~v~~-~d~~ 85 (258)
T 2fx5_A 34 CRIYRPRDLGQGGV--RHPVILWGNGTG-----------AGPSTY----AGLLSHWASHGFVVAA-AETS 85 (258)
T ss_dssp EEEEEESSTTGGGC--CEEEEEEECCTT-----------CCGGGG----HHHHHHHHHHTCEEEE-ECCS
T ss_pred EEEEeCCCCcccCC--CceEEEEECCCC-----------CCchhH----HHHHHHHHhCCeEEEE-ecCC
Confidence 88999986432 22 349999988531 111111 1235789999999998 5543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=86.64 E-value=14 Score=36.91 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=30.5
Q ss_pred ceEEEEeC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 157 ~~l~~~~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
+.|+++++ ++...++. ..+..++|||+| +++... ...+..++.++++.
T Consensus 146 G~L~v~dl~~~~~~~~~--~~Vs~v~WSpkG--~~vg~~-------------dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 146 NDLSALDLRTKSTKQLA--QNVTSFDVTNSQ--LAVLLK-------------DRSFQSFAWRNGEM 194 (388)
T ss_dssp SEEEEEETTTCCEEEEE--ESEEEEEECSSE--EEEEET-------------TSCEEEEEEETTEE
T ss_pred CCEEEEEccCCcccccc--CCceEEEEcCCc--eEEEEc-------------CCcEEEEcCCCccc
Confidence 57777888 45555442 246789999999 333322 12577778777764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=86.59 E-value=15 Score=37.51 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=29.6
Q ss_pred ceEEEEeC-CCCe-eecC-C--CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 157 AQLVLGSL-DGTA-KDFG-T--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 157 ~~l~~~~~-~g~~-~~lt-~--~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
.+|++++. +|+. ..+. . ......++++|||++|+++... ...|++++.+
T Consensus 250 ~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~------------~~~I~~~~~d 303 (433)
T 4hw6_A 250 AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG------------KHCIYRVDYN 303 (433)
T ss_dssp SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT------------TTEEEEEEBC
T ss_pred CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC------------CCEEEEEeCC
Confidence 35666776 3554 3321 1 1122358999999988888532 2368887765
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=86.42 E-value=2.5 Score=37.81 Aligned_cols=53 Identities=6% Similarity=-0.139 Sum_probs=29.9
Q ss_pred hHHHhc--cCeEEEeCCCCce-----------------eccCCC--CchhhHHHHhhcHHHHHHHHHHhccccccc
Q 007338 548 SLIFLA--RRFAVLAGPSIPI-----------------IGEGLW--SNWFQVQRLLLKKLFDVEWLIQAELLLEDT 602 (607)
Q Consensus 548 ~q~la~--~GY~Vl~~~~~~~-----------------~g~g~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 602 (607)
.+.|++ +||.|+. ++.|. .|.|.. ..........+++.+.++++.+.++ |.++
T Consensus 34 ~~~l~~~~~g~~v~~-~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 107 (218)
T 1auo_A 34 AEALQESLLTTRFVL-PQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGI-DASR 107 (218)
T ss_dssp HHHHHTTCTTEEEEE-CCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHHHHHHHHHHHHHTTC-CGGG
T ss_pred HHHHhhcCCceEEEe-CCCCCccccCCCCCcccceecCcCCCcccccchHHHHHHHHHHHHHHHHHHHcCC-Cccc
Confidence 568888 9999998 65442 122221 1222234556666666666665454 5443
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=1.2 Score=40.59 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=13.2
Q ss_pred hHHHhc--cCeEEEeCCCCc
Q 007338 548 SLIFLA--RRFAVLAGPSIP 565 (607)
Q Consensus 548 ~q~la~--~GY~Vl~~~~~~ 565 (607)
...|++ +||.|+. ++.|
T Consensus 44 ~~~l~~~~~g~~v~~-~d~p 62 (226)
T 3cn9_A 44 AEALQMVLPSTRFIL-PQAP 62 (226)
T ss_dssp HHHHHHHCTTEEEEE-CCCC
T ss_pred HHHHhhcCCCcEEEe-ecCC
Confidence 467887 9999998 6554
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=86.29 E-value=0.68 Score=49.68 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=42.1
Q ss_pred EEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEEeCCCCc--eeccCCC---
Q 007338 499 LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP--IIGEGLW--- 572 (607)
Q Consensus 499 l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl~~~~~~--~~g~g~~--- 572 (607)
+|+|.+ .++ ++|||||+|+|.|.. |+.... ....+.||+ .|++|+. .+.+ ..|....
T Consensus 131 ~y~p~~--~~~--~~PV~v~iHGGg~~~--------g~~~~~----~~~~~~l~~~~~~vvv~-~nYRlg~~Gfl~~~~~ 193 (585)
T 1dx4_A 131 NGNPQN--TTN--GLPILIWIYGGGFMT--------GSATLD----IYNADIMAAVGNVIVAS-FQYRVGAFGFLHLAPE 193 (585)
T ss_dssp --------CCS--SEEEEEEECCSTTTC--------CCTTCG----GGCCHHHHHHHTCEEEE-ECCCCTHHHHCCCGGG
T ss_pred cccccc--cCC--CCCEEEEECCCcccC--------CCCCCC----CCCchhhhccCCEEEEE-ecccccchhhcccccc
Confidence 456653 223 459999999764432 222110 011356665 7899998 3322 1121110
Q ss_pred C-----chhhHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 573 S-----NWFQVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 573 ~-----~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
. ...-+-.-+.|++.|++|+.+.- =.|+++|
T Consensus 194 ~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v 232 (585)
T 1dx4_A 194 MPSEFAEEAPGNVGLWDQALAIRWLKDNAHAFGGNPEWM 232 (585)
T ss_dssp SCGGGTTSSCSCHHHHHHHHHHHHHHHSTGGGTEEEEEE
T ss_pred cccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCccee
Confidence 0 00011223778999999998751 1266654
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=85.98 E-value=1.7 Score=44.87 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=49.9
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
..+.+++.||.+|+.... + .. |+||++|+.. ++...| ....+.|+++||.|+. +
T Consensus 4 i~~~~~~~dG~~l~y~~~---G-----~g--p~VV~lHG~~-----------~~~~~~----~~l~~~La~~Gy~Vi~-~ 57 (456)
T 3vdx_A 4 ITVGQENSTSIDLYYEDH---G-----TG--VPVVLIHGFP-----------LSGHSW----ERQSAALLDAGYRVIT-Y 57 (456)
T ss_dssp EEEEEETTEEEEEEEEEE---S-----SS--EEEEEECCTT-----------CCGGGG----TTHHHHHHHHTEEEEE-E
T ss_pred EeecccccCCeEEEEEEe---C-----CC--CEEEEECCCC-----------CcHHHH----HHHHHHHHHCCcEEEE-E
Confidence 446677889999885433 1 12 8888887531 111112 1235789999999998 6
Q ss_pred CCceecc-CCCCchhhHHHHhhcHHHHHHHH
Q 007338 563 SIPIIGE-GLWSNWFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 563 ~~~~~g~-g~~~~~~~~~~~~~~~~~~v~~~ 592 (607)
+.+..|. .......-..++.+|+.+.+++|
T Consensus 58 D~rG~G~S~~~~~~~s~~~~a~dl~~~l~~l 88 (456)
T 3vdx_A 58 DRRGFGQSSQPTTGYDYDTFAADLNTVLETL 88 (456)
T ss_dssp CCTTSTTSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 6644332 11122223366677777777776
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=85.81 E-value=0.3 Score=42.58 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=14.6
Q ss_pred hHHHhccCeEEEeCCCCcee
Q 007338 548 SLIFLARRFAVLAGPSIPII 567 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~ 567 (607)
.+.|+++||.|+. ++.+..
T Consensus 26 ~~~l~~~g~~v~~-~d~~g~ 44 (176)
T 2qjw_A 26 AEVAERLGWTHER-PDFTDL 44 (176)
T ss_dssp HHHHHHTTCEEEC-CCCHHH
T ss_pred HHHHHHCCCEEEE-eCCCCC
Confidence 4688999999998 665443
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=1.9 Score=44.54 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=53.9
Q ss_pred ceEEEEEECC--CCce--EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCC-cC--CCC-------CC-
Q 007338 481 QKEMIKYQRK--DGVP--LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-EF--SGM-------TP- 545 (607)
Q Consensus 481 ~~e~i~~~s~--DG~~--i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~-~~--~~~-------~~- 545 (607)
+..+|.|++. +|.. +-|.|+.|.+-.+ +.|+|.|.|+..-.. ..-.|- .. ... .+
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~~----~~pvvs~~hgt~g~~------~~CaPS~~~~~~~~~~~~~~~~~e 143 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKPAS----PPKIFSYQVYEDATA------LDCAPSYSYLTGLDQPNKVTAVLD 143 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSCCS----SCEEEEEECCCCCCS------GGGCHHHHHBSCSCCTTGGGGSTH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCCCC----CCcEEEEeCCcccCC------CCcCCccccccCCCccccchhhhh
Confidence 5666777555 5654 8999999987432 359999998652100 000110 00 000 01
Q ss_pred -chhHHH-hccCeEEEeCCCCceeccCCC-CchhhHHHHhhcHHHHHHHHH
Q 007338 546 -TSSLIF-LARRFAVLAGPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLI 593 (607)
Q Consensus 546 -~~~q~l-a~~GY~Vl~~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~ 593 (607)
...+.| +++||+|+. +++ .|.|.. .......+.+.|.++++..+.
T Consensus 144 ~~~~~~~~l~~G~~Vv~-~Dy--~G~G~~y~~~~~~~~~vlD~vrAa~~~~ 191 (462)
T 3guu_A 144 TPIIIGWALQQGYYVVS-SDH--EGFKAAFIAGYEEGMAILDGIRALKNYQ 191 (462)
T ss_dssp HHHHHHHHHHTTCEEEE-ECT--TTTTTCTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEE-ecC--CCCCCcccCCcchhHHHHHHHHHHHHhc
Confidence 123566 999999998 554 455553 222222233445555555553
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=85.59 E-value=2.2 Score=40.00 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=43.3
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
+++.||.+|+....-|+ +. |.||++|+. +.....+ ......|+++||.|+. ++.|-
T Consensus 3 ~~~~~g~~l~y~~~g~~------~~--~~vvllHG~--------------~~~~~~w-~~~~~~l~~~g~~vi~-~D~~G 58 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPR------DG--LPVVFHHGW--------------PLSADDW-DNQMLFFLSHGYRVIA-HDRRG 58 (275)
T ss_dssp EECTTSCEEEEEEESCT------TS--CEEEEECCT--------------TCCGGGG-HHHHHHHHHTTCEEEE-ECCTT
T ss_pred EEccCCCEEEEEEcCCC------CC--ceEEEECCC--------------CCchhhH-HHHHHHHHHCCceEEE-EcCCc
Confidence 56789999987766442 12 667776642 1111100 1124688999999998 66544
Q ss_pred eccCCC--Cc-hhhHHHHhhcHHHHHHHH
Q 007338 567 IGEGLW--SN-WFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 567 ~g~g~~--~~-~~~~~~~~~~~~~~v~~~ 592 (607)
+| .. .. ..-...+.+|+.+.++.|
T Consensus 59 ~G--~S~~~~~~~~~~~~~~dl~~~l~~l 85 (275)
T 1a88_A 59 HG--RSDQPSTGHDMDTYAADVAALTEAL 85 (275)
T ss_dssp ST--TSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 33 32 11 112244455555555544
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=85.27 E-value=2.2 Score=40.13 Aligned_cols=80 Identities=21% Similarity=0.168 Sum_probs=43.9
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
+++.||.+|+....-|+ +. |.||++|+.. ++...| ....+.|+++||.|+. ++.+-
T Consensus 4 ~~~~~g~~l~y~~~g~~------~~--~~vvllHG~~-----------~~~~~w----~~~~~~L~~~g~~vi~-~D~~G 59 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPR------DA--PVIHFHHGWP-----------LSADDW----DAQLLFFLAHGYRVVA-HDRRG 59 (276)
T ss_dssp EECTTSCEEEEEEESCT------TS--CEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE-ECCTT
T ss_pred EECCCCcEEEEEecCCC------CC--CeEEEECCCC-----------cchhHH----HHHHHHHHhCCCEEEE-ecCCC
Confidence 56789999987766442 12 6677777420 111111 1124688999999998 66543
Q ss_pred eccCCC--Cch-hhHHHHhhcHHHHHHHH
Q 007338 567 IGEGLW--SNW-FQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 567 ~g~g~~--~~~-~~~~~~~~~~~~~v~~~ 592 (607)
+ |.. ... .-...+.+|+.+.++.|
T Consensus 60 ~--G~S~~~~~~~~~~~~~~d~~~~l~~l 86 (276)
T 1zoi_A 60 H--GRSSQVWDGHDMDHYADDVAAVVAHL 86 (276)
T ss_dssp S--TTSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred C--CCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3 332 111 12244555655555554
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=85.22 E-value=2.7 Score=40.58 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=37.2
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+.+.++|.|. .|.+|..+ +.|. + +++ |+||+.|+... + +....|... ....+++++.||+|+
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~-~---~~~--p~vvllHG~~~------~---~~~~~w~~~-~~~~~~~~~~~~~vv 70 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSG-G---ANS--PALYLLDGLRA------Q---DDFSGWDIN-TPAFEWYDQSGLSVV 70 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECC-S---TTB--CEEEEECCTTC------C---SSSCHHHHH-CCHHHHHTTSSCEEE
T ss_pred eEEEEEEECccCCCceEEE-ECCC-C---CCC--CEEEEeCCCCC------C---CCcchhhcC-CCHHHHHhcCCeEEE
Confidence 5678888876 56788877 4444 3 344 99999885310 0 011111100 011367888999999
Q ss_pred e
Q 007338 560 A 560 (607)
Q Consensus 560 ~ 560 (607)
.
T Consensus 71 ~ 71 (304)
T 1sfr_A 71 M 71 (304)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=85.15 E-value=33 Score=34.38 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=33.3
Q ss_pred eEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+++||+.|+.... ...|.++|+.+++.......... .+..+.| ++++++..
T Consensus 137 ~~~~~d~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~--~~~~l~sg 189 (435)
T 1p22_A 137 YCLQYDDQKIVSGLR----------DNTIKIWDKNTLECKRILTGHTG----SVLCLQY--DERVIITG 189 (435)
T ss_dssp EEEECCSSEEEEEES----------SSCEEEEESSSCCEEEEECCCSS----CEEEEEC--CSSEEEEE
T ss_pred EEEEECCCEEEEEeC----------CCeEEEEeCCCCeEEEEEcCCCC----cEEEEEE--CCCEEEEE
Confidence 467789999877653 35788889998886544322221 1445556 66666653
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=84.82 E-value=0.59 Score=50.03 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCCceEEEEEEcCCCCC---CCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhcc-CeEEEeCCCC
Q 007338 489 RKDGVPLTATLYLPPGYD---QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSI 564 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~---~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~-GY~Vl~~~~~ 564 (607)
+.|.+.+ .+|.|.+.. +++ ++|||||+|+|-|.. |+...+ ....||++ |++|+. .+.
T Consensus 108 sEdcL~l--~v~~P~~~~~~~~~~--~~Pv~v~iHGGg~~~--------g~~~~~------~~~~la~~~~~vvv~-~~Y 168 (574)
T 3bix_A 108 SEDCLYL--NIYVPTEDDIRDSGG--PKPVMVYIHGGSYME--------GTGNLY------DGSVLASYGNVIVIT-VNY 168 (574)
T ss_dssp CSCCCEE--EEEEEC--------C--CEEEEEECCCSSSSS--------CCGGGS------CCHHHHHHHTCEEEE-ECC
T ss_pred CCcCCEE--EEEECCCCCcCCCCC--CCcEEEEECCCcccC--------CCCCcc------CchhhhccCCEEEEE-eCC
Confidence 4565554 578887642 123 459999999764432 222211 12467776 599998 332
Q ss_pred ce--eccCCCCc-hhhHHHHhhcHHHHHHHHHHhcc---cccccc
Q 007338 565 PI--IGEGLWSN-WFQVQRLLLKKLFDVEWLIQAEL---LLEDTL 603 (607)
Q Consensus 565 ~~--~g~g~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 603 (607)
+- .|...... ..-.-.-+.|+++|++||.+.-- .|+++|
T Consensus 169 Rl~~~Gfl~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~v 213 (574)
T 3bix_A 169 RLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRI 213 (574)
T ss_dssp CCHHHHHCCCSSSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred cCcccccCcCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhE
Confidence 11 12111000 00012347899999999987511 366654
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=84.56 E-value=0.81 Score=42.90 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred hHHHhccCeEEEeCCCCceeccCCCC---chhhHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIFLARRFAVLAGPSIPIIGEGLWS---NWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g~g~~~---~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
.+.|+++||.|+. ++.+ |.|... ...-...+.+|+.+.+++|..+
T Consensus 60 ~~~l~~~G~~v~~-~d~~--G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~ 107 (270)
T 3rm3_A 60 AEAYAKAGYTVCL-PRLK--GHGTHYEDMERTTFHDWVASVEEGYGWLKQR 107 (270)
T ss_dssp HHHHHHTTCEEEE-CCCT--TCSSCHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEE-eCCC--CCCCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 5789999999998 6654 444431 1223356688899999999865
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=0.34 Score=47.64 Aligned_cols=93 Identities=12% Similarity=-0.106 Sum_probs=50.7
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCc-CCCCCCchhHHHhccCeEEEeCCCCceecc
Q 007338 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (607)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~ 569 (607)
++..+.+.|+.|.++.++.+ +.||++|+-. ++... |. ....+.|+++||.|+. .+.|. .
T Consensus 12 ~~~~l~~~i~~p~~~~~~~~---~~VvllHG~~-----------~~~~~~~~---~~l~~~L~~~G~~v~~-~d~~g--~ 71 (317)
T 1tca_A 12 PKSVLDAGLTCQGASPSSVS---KPILLVPGTG-----------TTGPQSFD---SNWIPLSTQLGYTPCW-ISPPP--F 71 (317)
T ss_dssp CHHHHHHTEEETTBCTTSCS---SEEEEECCTT-----------CCHHHHHT---TTHHHHHHTTTCEEEE-ECCTT--T
T ss_pred CHHHHhheeeCCCCCCCCCC---CeEEEECCCC-----------CCcchhhH---HHHHHHHHhCCCEEEE-ECCCC--C
Confidence 44566777888988764432 4566666420 11111 21 1235788999999998 55433 3
Q ss_pred CCCCchhhHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 570 GLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
|.... .....++.+.|++++++--.+.=.|+-||
T Consensus 72 g~~~~----~~~~~~l~~~i~~~~~~~g~~~v~lVGhS 105 (317)
T 1tca_A 72 MLNDT----QVNTEYMVNAITALYAGSGNNKLPVLTWS 105 (317)
T ss_dssp TCSCH----HHHHHHHHHHHHHHHHHTTSCCEEEEEET
T ss_pred CCCcH----HHHHHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 33211 22345667777777765222333455554
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=84.11 E-value=0.58 Score=46.23 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=30.3
Q ss_pred hhHHHhccCeEEEeCCCCceeccCCC-Cc-------hhhHHHHhhcHHHHHHHHHHh
Q 007338 547 SSLIFLARRFAVLAGPSIPIIGEGLW-SN-------WFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~~~g~g~~-~~-------~~~~~~~~~~~~~~v~~~~~~ 595 (607)
..+.|+++||.|+. ++.+..|.... .. ..-...+.+|+.+.+++|.++
T Consensus 85 ~~~~l~~~g~~v~~-~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 140 (354)
T 2rau_A 85 IVLYLARNGFNVYT-IDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRD 140 (354)
T ss_dssp HHHHHHHTTEEEEE-EECGGGGCCTTCCGGGGGGGTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEE-ecCCCCCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHh
Confidence 35789999999998 55433332111 11 111256678899999998776
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=83.69 E-value=2.3 Score=39.83 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=42.0
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
+|+..||.+|+...+- . . |.||++|+-. ++...| ....+.|+++||.|+. ++.+
T Consensus 2 ~~~~~~g~~l~y~~~G-----~---g--~~vvllHG~~-----------~~~~~w----~~~~~~l~~~g~~vi~-~D~~ 55 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWG-----S---G--KPVLFSHGWL-----------LDADMW----EYQMEYLSSRGYRTIA-FDRR 55 (271)
T ss_dssp EEECTTSCEEEEEEES-----S---S--SEEEEECCTT-----------CCGGGG----HHHHHHHHTTTCEEEE-ECCT
T ss_pred eEEcCCCCEEEEEccC-----C---C--CeEEEECCCC-----------CcHHHH----HHHHHHHHhCCceEEE-ecCC
Confidence 4678899999876651 1 2 4466666420 111111 1124678899999998 6664
Q ss_pred eeccCCC--C-chhhHHHHhhcHHHHHHHH
Q 007338 566 IIGEGLW--S-NWFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 566 ~~g~g~~--~-~~~~~~~~~~~~~~~v~~~ 592 (607)
.. |.. + ...-...+.+|+.+.++.|
T Consensus 56 G~--G~S~~~~~~~~~~~~a~d~~~~l~~l 83 (271)
T 3ia2_A 56 GF--GRSDQPWTGNDYDTFADDIAQLIEHL 83 (271)
T ss_dssp TS--TTSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CC--ccCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 43 332 1 1111244455555555444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=83.52 E-value=28 Score=32.30 Aligned_cols=58 Identities=12% Similarity=-0.060 Sum_probs=31.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
......++++|+ |++. . .....|+++|.. |+.+.+...... .....+...+++++++.
T Consensus 63 ~~~~i~~~~~g~-l~v~-~--------~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~ 120 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFT-E--------NGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEGLNGDIWFT 120 (300)
T ss_dssp CEEEEEECTTSC-EEEE-E--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECSTTCEEEE
T ss_pred cceeEEECCCCC-EEEE-e--------cCCCeEEEECCC-CCeEEecCCCCC---CCCccceECCCCCEEEE
Confidence 456677888886 3333 2 123578888887 665443211110 11345666667776554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.26 E-value=22 Score=36.88 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=20.3
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
..++|+|+|++|+++-.. ...|++++.++
T Consensus 313 ~~ia~~p~G~~lYvaD~~------------~h~I~kid~dg 341 (496)
T 3kya_A 313 FQIFIHPTGKYAYFGVIN------------NHYFMRSDYDE 341 (496)
T ss_dssp EEEEECTTSSEEEEEETT------------TTEEEEEEEET
T ss_pred eEEEEcCCCCEEEEEeCC------------CCEEEEEecCC
Confidence 468999999988777422 24688866543
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=83.04 E-value=1.5 Score=40.99 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=12.9
Q ss_pred hHHHhccCeEEEeCCCCce
Q 007338 548 SLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~ 566 (607)
...|+++||.|+. ++.+.
T Consensus 44 ~~~l~~~g~~v~~-~d~~G 61 (279)
T 4g9e_A 44 LEGEIGKKWRVIA-PDLPG 61 (279)
T ss_dssp HHSHHHHHEEEEE-ECCTT
T ss_pred HhHHHhcCCeEEe-ecCCC
Confidence 3456788999998 66543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=82.74 E-value=55 Score=35.01 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=24.1
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
.....+.+.+++|+++-. ....|+.++++++..+.+.
T Consensus 351 ~~~ld~d~~~~~ly~sD~---------~~~~I~r~~~~g~~~~~v~ 387 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDD---------EVRAIRRSFIDGSGSQFVV 387 (619)
T ss_dssp EEEEEEETTTTEEEEEET---------TTTEEEEEETTSCSCEEEE
T ss_pred cEEEEEEcCCCeEEEEeC---------CCCeEEEEEcCCCccEEEE
Confidence 445567777777777542 2467888888876554443
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=82.44 E-value=1 Score=45.31 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=50.7
Q ss_pred EEEEECCCCc--eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 484 MIKYQRKDGV--PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 484 ~i~~~s~DG~--~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.|+++. .|. .+.+.||+|.+ +.|.|+||.++.+ . ..+.+||+|+.
T Consensus 113 ~I~v~~-~g~s~sf~~~i~lP~g-----~~P~Pvii~~~~~----------------~----------~~~~~G~A~i~- 159 (433)
T 4g4g_A 113 TVRVTV-GSKSISFSASIRKPSG-----AGPFPAIIGIGGA----------------S----------IPIPSNVATIT- 159 (433)
T ss_dssp EEEEEE-TTEEEEEEEEEECCSS-----SCCEEEEEEESCC----------------C----------SCCCTTSEEEE-
T ss_pred EEEEEc-CCeeEEEEEEEECCCC-----CCCccEEEEECCC----------------c----------cccCCCeEEEE-
Confidence 345543 454 46999999976 1356999976411 1 11457999996
Q ss_pred CCCc---------eeccCCCCc------hhhHHHH---hhcHHHHHHHHHH----hcccccccc
Q 007338 562 PSIP---------IIGEGLWSN------WFQVQRL---LLKKLFDVEWLIQ----AELLLEDTL 603 (607)
Q Consensus 562 ~~~~---------~~g~g~~~~------~~~~~~~---~~~~~~~v~~~~~----~~~~~~~~~ 603 (607)
.+.. ++|+|. +. ..|+ .+ .=++.+++++|.. +.-||.+++
T Consensus 160 f~~~~va~d~~~gsrG~g~-f~~ly~~~~~~g-al~aWAWg~~raiDyL~~~~~~~~~VD~~RI 221 (433)
T 4g4g_A 160 FNNDEFGAQMGSGSRGQGK-FYDLFGRDHSAG-SLTAWAWGVDRLIDGLEQVGAQASGIDTKRL 221 (433)
T ss_dssp ECHHHHSCCSSGGGTTCSH-HHHHHCTTCSCC-HHHHHHHHHHHHHHHHHHHCHHHHCEEEEEE
T ss_pred eCCcccccccCCCcCCccc-cccccCCccchH-HHHHHHHhHHHHHHHHHhccccCCCcChhHE
Confidence 2211 111221 11 1121 22 2278899999999 889999986
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=82.27 E-value=3.4 Score=40.76 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=36.2
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
+...||.+|+.+..-|++ ++. |+||++|+.. ++...| ......|+++||.|+. ++.+.
T Consensus 7 ~~~~~g~~l~y~~~G~~~----~~~--~~vv~~hG~~-----------~~~~~~----~~~~~~l~~~g~~vi~-~d~~g 64 (356)
T 2e3j_A 7 ILNCRGTRIHAVADSPPD----QQG--PLVVLLHGFP-----------ESWYSW----RHQIPALAGAGYRVVA-IDQRG 64 (356)
T ss_dssp EEEETTEEEEEEEECCTT----CCS--CEEEEECCTT-----------CCGGGG----TTTHHHHHHTTCEEEE-ECCTT
T ss_pred EEccCCeEEEEEEecCCC----CCC--CEEEEECCCC-----------CcHHHH----HHHHHHHHHcCCEEEE-EcCCC
Confidence 334589999999887653 123 7888877531 111122 1235688899999998 55543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=81.99 E-value=57 Score=35.30 Aligned_cols=54 Identities=6% Similarity=-0.030 Sum_probs=32.4
Q ss_pred ceEEEEeC-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 157 AQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 157 ~~l~~~~~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
..|..+|+ +|+.. ++..........++.+|..|++.+. ...++.+|+++|++..
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~-------------dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA-------------DGRLVAYHAATGEKLW 512 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-------------TSEEEEEETTTCCEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC-------------CCcEEEEECCCCceee
Confidence 67889998 77533 2322222233456667777666531 2378999998776544
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=81.98 E-value=2.9 Score=39.09 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
+++.||.+|+.... + +. |.||++|+.. ++...| ......|+++||.|+. ++.+-
T Consensus 3 ~~~~~g~~l~y~~~---g-----~~--~~vvllHG~~-----------~~~~~~----~~~~~~L~~~g~~vi~-~D~~G 56 (273)
T 1a8s_A 3 FTTRDGTQIYYKDW---G-----SG--QPIVFSHGWP-----------LNADSW----ESQMIFLAAQGYRVIA-HDRRG 56 (273)
T ss_dssp EECTTSCEEEEEEE---S-----CS--SEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE-ECCTT
T ss_pred EecCCCcEEEEEEc---C-----CC--CEEEEECCCC-----------CcHHHH----hhHHhhHhhCCcEEEE-ECCCC
Confidence 67789998875543 1 12 6677776420 011111 1124688999999998 66543
Q ss_pred eccCCC--Cch-hhHHHHhhcHHHHHHHH
Q 007338 567 IGEGLW--SNW-FQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 567 ~g~g~~--~~~-~~~~~~~~~~~~~v~~~ 592 (607)
.|.. +.. .-...+.+|+.+.++.|
T Consensus 57 --~G~S~~~~~~~~~~~~~~dl~~~l~~l 83 (273)
T 1a8s_A 57 --HGRSSQPWSGNDMDTYADDLAQLIEHL 83 (273)
T ss_dssp --STTSCCCSSCCSHHHHHHHHHHHHHHT
T ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3332 111 11244455555554443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.97 E-value=33 Score=31.96 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=28.2
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
..+.++|+|+++.|+.+.+. +..|+.+|+++...+.+
T Consensus 28 ~lSGla~~~~~~~L~aV~d~------------~~~I~~ld~~g~v~~~i 64 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINK------------PAAIVEMTTNGDLIRTI 64 (255)
T ss_dssp CEEEEEEETTTTEEEEEEET------------TEEEEEEETTCCEEEEE
T ss_pred CcceeEEeCCCCEEEEEECC------------CCeEEEEeCCCCEEEEE
Confidence 46789999998888887654 23799999996655555
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=81.01 E-value=35 Score=31.63 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=30.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
......++|||+ |++ .. .....|++++. +++...+.. ... . .....+.+.+++++++.
T Consensus 147 ~~~~i~~d~~g~-l~v-~~--------~~~~~i~~~~~-~g~~~~~~~-~~~-~-~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 147 YPAFITLGSDNA-LWF-TE--------NQNNSIGRITN-TGKLEEYPL-PTN-A-AAPVGITSGNDGALWFV 204 (300)
T ss_dssp CEEEEEECTTSS-EEE-EE--------TTTTEEEEECT-TCCEEEEEC-SST-T-CCEEEEEECTTSSEEEE
T ss_pred CceeEEECCCCC-EEE-Ee--------cCCCeEEEECC-CCcEEEeeC-CCC-C-CCcceEEECCCCCEEEE
Confidence 456677888887 433 32 12356888888 565544321 110 0 01335566666665554
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=80.15 E-value=2.5 Score=40.36 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=32.3
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCch-h-HHHhccCeEEEeCCCCce
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS-S-LIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~-~-q~la~~GY~Vl~~~~~~~ 566 (607)
..||.+|+...+-|+ .. |.||++|+. +.... .|.. . ..|+++||.|+. ++.+-
T Consensus 7 ~~~g~~l~y~~~G~~------~~--~~vvllHG~--------------~~~~~--~w~~~~~~~L~~~G~~vi~-~D~rG 61 (298)
T 1q0r_A 7 PSGDVELWSDDFGDP------AD--PALLLVMGG--------------NLSAL--GWPDEFARRLADGGLHVIR-YDHRD 61 (298)
T ss_dssp EETTEEEEEEEESCT------TS--CEEEEECCT--------------TCCGG--GSCHHHHHHHHTTTCEEEE-ECCTT
T ss_pred ccCCeEEEEEeccCC------CC--CeEEEEcCC--------------CCCcc--chHHHHHHHHHhCCCEEEe-eCCCC
Confidence 358999887766432 12 667777742 11111 1221 3 678999999998 66543
Q ss_pred ec
Q 007338 567 IG 568 (607)
Q Consensus 567 ~g 568 (607)
.|
T Consensus 62 ~G 63 (298)
T 1q0r_A 62 TG 63 (298)
T ss_dssp ST
T ss_pred CC
Confidence 33
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 607 | ||||
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 1e-04 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 4e-04 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 0.001 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 0.002 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 0.003 |
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 34/273 (12%), Positives = 70/273 (25%), Gaps = 22/273 (8%)
Query: 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103
RIA+ V+ + + ++D + + SP + S W + + L +
Sbjct: 5 RIAYVVQTNGGQFPY----ELRVSDYDGYNQFVVHRSPQPLM-----SPAWSPDGSKLAY 55
Query: 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163
S R + G Q + ++ +
Sbjct: 56 VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115
Query: 164 LDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223
+ + T PD + + TS Q T + +
Sbjct: 116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQ 172
Query: 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP--RDIIYTQ 281
D + D G + + D + V + D ++P +IY+
Sbjct: 173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSS 232
Query: 282 PAE--------PAEGEKPEILHKLDLRFRSVSW 306
+G L D + + +W
Sbjct: 233 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW 265
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAY 520
I Y KDG + + G DG P + Y
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIK--LDGSHPAFLYGY 43
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 39.3 bits (90), Expect = 0.001
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 466 QITNFPHPYPTLAS-LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDY 524
IT P ++ K + +DGV L + LP G P + P D
Sbjct: 7 DITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDA 61
Query: 525 KSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560
+ R + + +F+ + +
Sbjct: 62 ----SGRTERLASPHMKDLLSAGDDVFVEGGYIRVF 93
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.9 bits (86), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAY 520
+ + + + + LPP +D+SK P L Y
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVY 39
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 37.8 bits (86), Expect = 0.003
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ 532
P K + +DGV L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 533 VRGSPNEFSGMTPTSSLIFLARRFAVLA 560
+ + P +F+ + +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVF 98
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.77 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.73 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.72 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.64 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.61 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.6 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.4 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.19 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.16 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.06 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.98 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.95 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 98.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.93 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.85 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.82 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.78 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 98.76 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.72 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.69 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.67 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.65 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.62 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.62 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.62 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.61 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.59 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 98.58 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.54 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.53 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.48 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.46 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 98.45 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.39 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 98.38 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.35 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.33 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.32 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 98.28 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 98.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.16 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.15 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.14 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.08 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.87 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 97.86 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 97.85 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.84 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 97.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.76 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 97.75 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.73 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 97.71 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.69 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.61 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.56 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 97.49 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.41 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 97.4 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.38 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 97.36 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 97.35 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 97.33 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 97.28 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.21 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.18 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 97.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.11 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 97.11 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 97.02 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 97.0 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.92 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.62 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.58 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 96.5 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.41 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.25 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 95.89 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 95.7 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 95.6 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.28 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 95.2 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.18 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.11 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.65 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 94.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 94.06 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.88 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 93.88 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 93.39 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.18 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 93.05 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 91.28 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.45 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 89.68 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 89.29 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 89.19 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 89.08 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 88.7 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 87.8 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 87.56 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 87.25 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 87.15 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 86.93 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 86.78 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 85.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 85.06 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 85.01 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 83.24 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 82.8 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 82.34 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 82.25 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 81.9 |
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.8e-16 Score=153.00 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=158.8
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
..+|||-|.. ++..++|+..+. .+..|+|||||++|||++.+ .....+|+++..++..++++.....
T Consensus 18 ~~~l~i~d~d----G~~~~~l~~~~~--~~~sP~wSPDGk~IAf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (269)
T d2hqsa1 18 PYELRVSDYD----GYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPRH 84 (269)
T ss_dssp CEEEEEEETT----SCSCEEEEEESS--CEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSSC
T ss_pred eEEEEEEcCC----CCCcEEEecCCC--ceeeeEECCCCCEEEEEEee-------ccCcceeeeecccCceeEEeeeecc
Confidence 3479999986 889999985443 57899999999999999875 4567899999999999888866542
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
...+.|+||++.+++..... + ...++...
T Consensus 85 -----~~~~~~spdg~~i~~~~~~~---------------------~-------------------------~~~~~~~~ 113 (269)
T d2hqsa1 85 -----NGAPAFSPDGSKLAFALSKT---------------------G-------------------------SLNLYVMD 113 (269)
T ss_dssp -----EEEEEECTTSSEEEEEECTT---------------------S-------------------------SCEEEEEE
T ss_pred -----cccceecCCCCeeeEeeecC---------------------C-------------------------ccceeecc
Confidence 45789999987666542110 0 01122222
Q ss_pred C-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 164 ~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
. ......+... .......++++++.++++..... ..+|++++++++...++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~------------- 170 (269)
T d2hqsa1 114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEG------------- 170 (269)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSS-------------
T ss_pred cccccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeeccc-------------
Confidence 2 2222332222 23346789999999998875432 237899999988777765410
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.....+.|||||+. +++.... ++. ..+++.+. .. ....++........|.|||||+.|+|.... .
T Consensus 171 ~~~~~~~~spdg~~-~~~~~~~-~~~--------~~i~~~~~--~~--~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~ 235 (269)
T d2hqsa1 171 SQNQDADVSSDGKF-MVMVSSN-GGQ--------QHIAKQDL--AT--GGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-G 235 (269)
T ss_dssp SEEEEEEECTTSSE-EEEEEEC-SSC--------EEEEEEET--TT--CCEEECCCSSSCEEEEECTTSSEEEEEEEE-T
T ss_pred ccccccccccccce-eEEEeec-CCc--------eeeeEeec--cc--ccceEeecCccccceEECCCCCEEEEEEcC-C
Confidence 11124899999995 3333221 221 23444442 22 223333444455679999999998887643 3
Q ss_pred cceEEEEEcCCCCCCCceEeeec--cccccccCCCCCCeeeCC
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTS 362 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~ 362 (607)
+..+||++++++ +..+.|+.. .+.. ++|+|
T Consensus 236 ~~~~l~~~~~dg--~~~~~lt~~~g~~~~---------p~WSP 267 (269)
T d2hqsa1 236 MGSVLNLVSTDG--RFKARLPATDGQVKF---------PAWSP 267 (269)
T ss_dssp TEEEEEEEETTS--CCEEECCCSSSEEEE---------EEECC
T ss_pred CCcEEEEEECCC--CCEEEEeCCCCcEEe---------EEeCC
Confidence 457999999998 455666532 2333 78887
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=1.4e-16 Score=154.54 Aligned_cols=255 Identities=14% Similarity=0.115 Sum_probs=153.6
Q ss_pred eEEccC--CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 36 VSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 36 ~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
..+||| |++|||++. .+||++|+++|++++||..... ...+.|||||+.|+++....
T Consensus 4 ~~~sPdi~G~~v~f~~~-----------~dl~~~d~~~g~~~~Lt~~~~~-----~~~p~~SPDG~~iaf~~~~~----- 62 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC-----------DDLWEHDLKSGSTRKIVSNLGV-----INNARFFPDGRKIAIRVMRG----- 62 (281)
T ss_dssp CCEEEEEETTEEEEEET-----------TEEEEEETTTCCEEEEECSSSE-----EEEEEECTTSSEEEEEEEES-----
T ss_pred cccCCCCCCCEEEEEeC-----------CcEEEEECCCCCEEEEecCCCc-----ccCEEECCCCCEEEEEEeeC-----
Confidence 457999 999999863 3799999999999999876542 56899999987666542110
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC--------ceeeeeeCC
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA--------VYTAVEPSP 184 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~--------~~~~~~~Sp 184 (607)
+. ....+||++++ +|+.++|+... ....+.|||
T Consensus 63 ----------------~~----------------------~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp 104 (281)
T d1k32a2 63 ----------------SS----------------------LNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP 104 (281)
T ss_dssp ----------------TT----------------------CCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT
T ss_pred ----------------CC----------------------CCceEEEEEEecCCceEEeeecCCCccCccccccccccCC
Confidence 00 01357999999 66888887542 123678999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
||+.|+|+....+... ...++.++.+++..+.+.. +.....|++++...++......
T Consensus 105 dg~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 161 (281)
T d1k32a2 105 DGNLIISTDAMQPFSS-------MTCLYRVENDGINFVPLNL----------------GPATHILFADGRRVIGRNTFEL 161 (281)
T ss_dssp TCCEEEEECTTSSSTT-------CCEEEEEEGGGTEEEECCS----------------CSCSEEEEETTEEEEEESCSCC
T ss_pred CCCEEEEEEccCCCcc-------ceeeeeecCCCceeEEecC----------------CccceeeecCCCeEEEeecccc
Confidence 9999999865433211 2256778888887665432 2234678888875443322111
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
.................. ..+ ....+.........+.|+++...+.. ...+..+||++|+++ ++.+.|+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~d~~g--~~~~~lt~~ 232 (281)
T d1k32a2 162 PHWKGYRGGTRGKIWIEV---NSG-AFKKIVDMSTHVSSPVIVGHRIYFIT---DIDGFGQIYSTDLDG--KDLRKHTSF 232 (281)
T ss_dssp TTSTTCCSTTCCEEEEEE---ETT-EEEEEECCSSCCEEEEEETTEEEEEE---CTTSSCEEEEEETTS--CSCEECCCC
T ss_pred ceeeeeccCCcceeeeec---ccc-ceeeccCCccccceeeeeccccceec---ccccccceEEEeCCC--CceEEeecC
Confidence 111100011111111100 000 12223333344556777776433222 223557899999999 456777642
Q ss_pred cccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEe
Q 007338 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (607)
.-.. ...|+|||+.|+|... ..|| .+|+++|+.++|.
T Consensus 233 ~~~~--------~~~~SpDG~~I~f~~~------~~l~----------------~~d~~~g~~~~i~ 269 (281)
T d1k32a2 233 TDYY--------PRHLNTDGRRILFSKG------GSIY----------------IFNPDTEKIEKIE 269 (281)
T ss_dssp CSSC--------EEEEEESSSCEEEEET------TEEE----------------EECTTTCCEEECC
T ss_pred CCcc--------cccCcCCCCEEEEEeC------CEEE----------------EEECCCCCEEEec
Confidence 2111 1578999999988652 2233 5788899988773
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.1e-15 Score=159.39 Aligned_cols=333 Identities=11% Similarity=0.056 Sum_probs=182.6
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
+..++||.++. +++.++|+.... ...+..|.|||||++|||++. .+||+++..+++..++|...
T Consensus 89 ~~~~~~i~d~~----~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-----------~nl~~~~~~~~~~~~lt~~g 153 (465)
T d1xfda1 89 YTGYYVLSKIP----HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-----------NNIYYCAHVGKQAIRVVSTG 153 (465)
T ss_dssp CCSEEEEEESS----SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-----------TEEEEESSSSSCCEEEECCC
T ss_pred ccccEEEEEcc----CCceeeccCccCCccccceeeeccCCceEEEEec-----------ceEEEEecCCCceEEEeccc
Confidence 45689999998 888888874332 224678999999999999873 58999999999988888543
Q ss_pred Ccc-c-cc------------cccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCccc
Q 007338 82 DIC-L-NA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (607)
Q Consensus 82 ~~~-~-~~------------~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 147 (607)
... + +. ....+.|||||+.|++..-+++... .......+.. ...... .++++..
T Consensus 154 ~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~----------~~~~~~~~~~-~~p~~~-~~~Yp~~ 221 (465)
T d1xfda1 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP----------IMELPTYTGS-IYPTVK-PYHYPKA 221 (465)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC----------EEEECCCSSS-SSCCCE-EEECCBT
T ss_pred CcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc----------eeeccccccc-ccceee-eeecccc
Confidence 311 0 10 0135679999876555432222110 0000000000 000000 0122111
Q ss_pred ccceeeeccceEEEEeCC-CCeeec-CCC------C-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 148 ESLFDYYTTAQLVLGSLD-GTAKDF-GTP------A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~-g~~~~l-t~~------~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
+. . ....+|++++++ +..+.+ ... . +...+.|+||++.+++..+ +... ...+.++|+.+
T Consensus 222 G~--~-np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n-R~q~--------~~~i~~~d~~t 289 (465)
T d1xfda1 222 GS--E-NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN-RAQN--------VSILTLCDATT 289 (465)
T ss_dssp TS--C-CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE-TTSC--------EEEEEEEETTT
T ss_pred CC--C-CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc-cccc--------cceEEEEcCCC
Confidence 11 0 124589999994 433221 111 1 3457899999875555443 3321 23688999999
Q ss_pred CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC
Q 007338 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (607)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~ 298 (607)
|+++.+... ..+.+ .+
T Consensus 290 g~~~~~~~e-------------------------------------~~~~w---------------------------v~ 305 (465)
T d1xfda1 290 GVCTKKHED-------------------------------------ESEAW---------------------------LH 305 (465)
T ss_dssp CCEEEEEEE-------------------------------------ECSSC---------------------------CC
T ss_pred CcEEEEEEE-------------------------------------cCCce---------------------------Ee
Confidence 887765320 00000 00
Q ss_pred cccceeeEcCCCcEEEEEE-eccccceEEEEEcCCC-----CCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 299 LRFRSVSWCDDSLALVNET-WYKTSQTRTWLVCPGS-----KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 299 ~~~~~~~ws~Dg~~l~~~~-~~~~~~~~l~~~dl~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.....+.|++||+.+++.. ....+..+||.+.+.+ .....+.|+.+.+.- .. .+.|+++++.|||.+.
T Consensus 306 ~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V-~~-----i~~~d~~~~~vyF~a~ 379 (465)
T d1xfda1 306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV-TK-----ILAYDEKGNKIYFLST 379 (465)
T ss_dssp CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE-EE-----EEEEETTTTEEEEEES
T ss_pred ccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceE-EE-----EEEEcCCCCEEEEEEe
Confidence 0123477888887544432 1233456777665421 112346666544321 00 2568889999988875
Q ss_pred eccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeE-EeecCCcccceeeeeeecCCCcccccccCCEEEEEeeccccc
Q 007338 373 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER-IWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI 451 (607)
Q Consensus 373 ~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p 451 (607)
.+.....+| ++++++++.... |+..... -.+. ..++||+++++++.+++.++.|
T Consensus 380 ~~~p~~~hl----------------y~v~l~g~~~~~~lt~~~~~--~~~~-------~~~~~S~~~~y~v~~~s~~~~P 434 (465)
T d1xfda1 380 EDLPRRRQL----------------YSANTVGNFNRQCLSCDLVE--NCTY-------FSASFSHSMDFFLLKCEGPGVP 434 (465)
T ss_dssp SSCTTCCEE----------------EEECSSTTCCCBCSSTTSSS--SCCC-------CEEEECTTSSEEEEECCSSSSC
T ss_pred CCCCCceEE----------------EEEECCCCCcceeeccccCC--CCCE-------EEEEECCCCCEEEEEeecCCCC
Confidence 322112334 466766554333 3211100 0011 1246899999999999999887
Q ss_pred ceEEEEecCCCc-eeeEecC
Q 007338 452 TQYHILSWPLKK-SSQITNF 470 (607)
Q Consensus 452 ~~l~~~~~~~~~-~~~Lt~~ 470 (607)
+ ..+++..+++ ++.|+++
T Consensus 435 ~-~~~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 435 M-VTVHNTTDKKKMFDLETN 453 (465)
T ss_dssp C-EEEEETTTCCEEEEEECC
T ss_pred e-EEEEECCCCCEEEEEcCC
Confidence 7 6677766665 4455544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.72 E-value=5.4e-15 Score=154.91 Aligned_cols=89 Identities=19% Similarity=0.121 Sum_probs=62.6
Q ss_pred eeEEEeccCCCCCCCeeeeecCCC----CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPD----GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~----~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
+|++.++. +|+.+++..-.. ...+.+++|||||++|||.++.... --.....++|++|+++++.++++..+
T Consensus 37 ~~~~~~~~----t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~-~r~s~~~~~~l~d~~~~~~~~l~~~~ 111 (470)
T d2bgra1 37 NILVFNAE----YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ-WRHSYTASYDIYDLNKRQLITEERIP 111 (470)
T ss_dssp CEEEEETT----TCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECC----CCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcce-eeeccCceEEEEECCCCcccccccCC
Confidence 57888887 777766542111 1247899999999999998753100 00133578999999999999887665
Q ss_pred CccccccccceEEecCCeEEEEE
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.. +..+.|||||+.+++.
T Consensus 112 ~~-----~~~~~~SPDG~~ia~~ 129 (470)
T d2bgra1 112 NN-----TQWVTWSPVGHKLAYV 129 (470)
T ss_dssp TT-----EEEEEECSSTTCEEEE
T ss_pred cc-----ccccccccCcceeeEe
Confidence 43 5689999998866664
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.4e-13 Score=132.15 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=152.0
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
.+|||++..+.. ....+||++|.+++..++||..... +..+.|||||+.|+|.....
T Consensus 4 ~~iay~~~~~~~----~~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~wSPDGk~IAf~~~~~-------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES-------------- 60 (269)
T ss_dssp CEEEEEEECSSS----SCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT--------------
T ss_pred CeEEEEEEeCCC----CceEEEEEEcCCCCCcEEEecCCCc-----eeeeEECCCCCEEEEEEeec--------------
Confidence 789999876321 3345899999999999999866542 56899999988766642110
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
...+++.++. .+..++++.. .....+.|||||+.|++......
T Consensus 61 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~--- 105 (269)
T d2hqsa1 61 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 105 (269)
T ss_dssp --------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---
T ss_pred --------------------------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC---
Confidence 1246777787 4566666544 34567899999999999875322
Q ss_pred ccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEe
Q 007338 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (607)
...+..+.........+... ......+.|+++++. ++++....+ ...++.
T Consensus 106 -------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~g---------~~~i~~ 155 (269)
T d2hqsa1 106 -------SLNLYVMDLASGQIRQVTDG-------------RSNNTEPTWFPDSQN-LAFTSDQAG---------RPQVYK 155 (269)
T ss_dssp -------SCEEEEEETTTCCEEECCCC-------------SSCEEEEEECTTSSE-EEEEECTTS---------SCEEEE
T ss_pred -------ccceeecccccccceeeeec-------------ccccccccccccccc-ceecccccC---------CceEee
Confidence 12344444444433333221 011123678888774 333322211 123444
Q ss_pred ccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeee
Q 007338 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (607)
Q Consensus 281 ~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (607)
.+. .+.....++........+.|||||+.+++.... .+...+++++..++ ..+.+... ..+ ..+.|
T Consensus 156 ~~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~~--~~~~~~~~-~~~-------~~p~~ 221 (269)
T d2hqsa1 156 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG--GVQVLSST-FLD-------ETPSL 221 (269)
T ss_dssp EET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTC--CEEECCCS-SSC-------EEEEE
T ss_pred eec---ccccceeeecccccccccccccccceeEEEeec-CCceeeeEeecccc--cceEeecC-ccc-------cceEE
Confidence 332 222344455555567789999999987776543 35568999998873 33333221 111 12889
Q ss_pred CCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeec
Q 007338 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (607)
Q Consensus 361 ~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (607)
+|||+.|+|.....+ ... |+.++++++..++|+..
T Consensus 222 SPDG~~i~f~s~~~~--~~~----------------l~~~~~dg~~~~~lt~~ 256 (269)
T d2hqsa1 222 APNGTMVIYSSSQGM--GSV----------------LNLVSTDGRFKARLPAT 256 (269)
T ss_dssp CTTSSEEEEEEEETT--EEE----------------EEEEETTSCCEEECCCS
T ss_pred CCCCCEEEEEEcCCC--CcE----------------EEEEECCCCCEEEEeCC
Confidence 999999999876422 222 33577877777777543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.5e-13 Score=140.25 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=59.5
Q ss_pred eeEEEeccCCCCCCCeeeeecCCC--CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPD--GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~--~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
+|++.++. +++.+.|..... ........|||||++|+|..+.... =-......+|++|+++++.++|+.....
T Consensus 38 ~i~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~-~r~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 38 TVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-YQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CEEEBCGG----GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-SSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred cEEEEECC----CCCEEEEEcCccccccccceeEECCCCCeEEEEEcccce-eEeeccccEEEEEccCCceeeccCccCC
Confidence 68888887 666666542221 1246678899999999998653100 0012346899999999999988643321
Q ss_pred cccccccceEEecCCeEEEEE
Q 007338 84 CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...+..+.|||||+.+++.
T Consensus 113 --~~~l~~~~wSPDG~~iafv 131 (465)
T d1xfda1 113 --NAKLQYAGWGPKGQQLIFI 131 (465)
T ss_dssp --SCCCSBCCBCSSTTCEEEE
T ss_pred --ccccceeeeccCCceEEEE
Confidence 1113468999997755553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=1.6e-13 Score=132.39 Aligned_cols=244 Identities=13% Similarity=0.101 Sum_probs=141.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
+||+.+++ +|+.++||..+ ..+..|+|||||++|||+..++.. ....+||++++.+|+.++||.......
T Consensus 22 dl~~~d~~----~g~~~~Lt~~~--~~~~~p~~SPDG~~iaf~~~~~~~----~~~~~i~~~~~~~g~~~~lt~~~~~~~ 91 (281)
T d1k32a2 22 DLWEHDLK----SGSTRKIVSNL--GVINNARFFPDGRKIAIRVMRGSS----LNTADLYFYNGENGEIKRITYFSGKST 91 (281)
T ss_dssp EEEEEETT----TCCEEEEECSS--SEEEEEEECTTSSEEEEEEEESTT----CCEEEEEEEETTTTEEEECCCCCEEEE
T ss_pred cEEEEECC----CCCEEEEecCC--CcccCEEECCCCCEEEEEEeeCCC----CCceEEEEEEecCCceEEeeecCCCcc
Confidence 89999998 99999998533 368999999999999999875321 345789999999999999986543211
Q ss_pred c--ccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 86 N--AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 86 ~--~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
. .....+.|+||++.++++..... . .....++.++
T Consensus 92 ~~~~~~~~~~~spdg~~l~~~~~~~~---------------------~----------------------~~~~~~~~~~ 128 (281)
T d1k32a2 92 GRRMFTDVAGFDPDGNLIISTDAMQP---------------------F----------------------SSMTCLYRVE 128 (281)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSS---------------------S----------------------TTCCEEEEEE
T ss_pred CccccccccccCCCCCEEEEEEccCC---------------------C----------------------ccceeeeeec
Confidence 0 11236789999887777521100 0 0012344555
Q ss_pred CC-CCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 164 LD-GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 164 ~~-g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
.. +..+...... ....|++++..+++............... ...........+....+... ..
T Consensus 129 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~ 192 (281)
T d1k32a2 129 NDGINFVPLNLGP--ATHILFADGRRVIGRNTFELPHWKGYRGG-TRGKIWIEVNSGAFKKIVDM-------------ST 192 (281)
T ss_dssp GGGTEEEECCSCS--CSEEEEETTEEEEEESCSCCTTSTTCCST-TCCEEEEEEETTEEEEEECC-------------SS
T ss_pred CCCceeEEecCCc--cceeeecCCCeEEEeeccccceeeeeccC-CcceeeeeccccceeeccCC-------------cc
Confidence 53 3444433222 23566778777777654332111110000 11223333333444433321 01
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
....+.|+++. +++.... .....|++++ ++|.+.+.|+... ......|||||+.|++...
T Consensus 193 ~~~~~~~~~~~---~~~~~~~---------~~~~~l~~~d---~~g~~~~~lt~~~-~~~~~~~SpDG~~I~f~~~---- 252 (281)
T d1k32a2 193 HVSSPVIVGHR---IYFITDI---------DGFGQIYSTD---LDGKDLRKHTSFT-DYYPRHLNTDGRRILFSKG---- 252 (281)
T ss_dssp CCEEEEEETTE---EEEEECT---------TSSCEEEEEE---TTSCSCEECCCCC-SSCEEEEEESSSCEEEEET----
T ss_pred ccceeeeeccc---cceeccc---------ccccceEEEe---CCCCceEEeecCC-CcccccCcCCCCEEEEEeC----
Confidence 11235666552 3333211 1234577766 3454666776543 2334579999999988653
Q ss_pred ceEEEEEcCCCCCCCceEe
Q 007338 323 QTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l 341 (607)
.+||++|+++ ++.+.|
T Consensus 253 -~~l~~~d~~~--g~~~~i 268 (281)
T d1k32a2 253 -GSIYIFNPDT--EKIEKI 268 (281)
T ss_dssp -TEEEEECTTT--CCEEEC
T ss_pred -CEEEEEECCC--CCEEEe
Confidence 3799999998 456666
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=6.2e-14 Score=140.01 Aligned_cols=170 Identities=15% Similarity=0.082 Sum_probs=116.0
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||+.++. +|..+++. ....+..++|||||++|++.... ....|+++|+++++.++++.....
T Consensus 24 g~v~v~d~~----~~~~~~~~---~~~~v~~~~~spDg~~l~~~~~~--------~g~~v~v~d~~~~~~~~~~~~~~~- 87 (360)
T d1k32a3 24 GQAFIQDVS----GTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTR--------EGDFLGIYDYRTGKAEKFEENLGN- 87 (360)
T ss_dssp TEEEEECTT----SSBEEECS---CCSCEEEEEECSSSEEEEEEEET--------TEEEEEEEETTTCCEEECCCCCCS-
T ss_pred CeEEEEECC----CCcEEEcc---CCCCEEEEEECCCCCEEEEEEcC--------CCCEEEEEECCCCcEEEeeCCCce-
Confidence 478999986 78888775 33469999999999999998763 346799999999999988755432
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
+..+.|+||++.+++... ...++.+++
T Consensus 88 ----v~~~~~spdg~~l~~~~~-------------------------------------------------~~~~~~~~~ 114 (360)
T d1k32a3 88 ----VFAMGVDRNGKFAVVAND-------------------------------------------------RFEIMTVDL 114 (360)
T ss_dssp ----EEEEEECTTSSEEEEEET-------------------------------------------------TSEEEEEET
T ss_pred ----EEeeeecccccccceecc-------------------------------------------------ccccccccc
Confidence 568899999887776421 124555666
Q ss_pred -CCCeeecC-CC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 165 -DGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 165 -~g~~~~lt-~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+++...+. .. .....++|||||++|++........... .....++++++.+++...+... .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~---~~~~~~~v~d~~~~~~~~~~~~-------------~ 178 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG---YVMQAIHVYDMEGRKIFAATTE-------------N 178 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS---CCEEEEEEEETTTTEEEECSCS-------------S
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccceee---ccccceeeeccccCceeeeccc-------------c
Confidence 44444332 22 2446799999999999986543211100 1124688999999887776541 1
Q ss_pred CCCCcceeecCCCceEEEE
Q 007338 242 EGMRSISWRADKPSTLYWV 260 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~ 260 (607)
.....+.|||||+. |++.
T Consensus 179 ~~~~~~~~spdg~~-l~~~ 196 (360)
T d1k32a3 179 SHDYAPAFDADSKN-LYYL 196 (360)
T ss_dssp SBEEEEEECTTSCE-EEEE
T ss_pred cccccccccCCCCE-EEEE
Confidence 11234889999984 4443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=1.7e-12 Score=135.60 Aligned_cols=313 Identities=10% Similarity=0.022 Sum_probs=169.1
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
+..++||.++. +++.++++..+. .+..|.|||||++|||.++ .+||++++.+|+..+++....
T Consensus 90 ~~~~~~l~d~~----~~~~~~l~~~~~--~~~~~~~SPDG~~ia~~~~-----------~~l~~~~~~~g~~~~~t~~~~ 152 (470)
T d2bgra1 90 YTASYDIYDLN----KRQLITEERIPN--NTQWVTWSPVGHKLAYVWN-----------NDIYVKIEPNLPSYRITWTGK 152 (470)
T ss_dssp EEEEEEEEETT----TTEECCSSCCCT--TEEEEEECSSTTCEEEEET-----------TEEEEESSTTSCCEECCSCCB
T ss_pred cCceEEEEECC----CCcccccccCCc--cccccccccCcceeeEeec-----------ccceEEECCCCceeeeeeccC
Confidence 34689999997 888888886544 5889999999999999763 489999999999888875432
Q ss_pred ccc--c------------ccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCcc--ccccccccccccCcc
Q 007338 83 ICL--N------------AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKN--IIISRMTDNLLKDEY 146 (607)
Q Consensus 83 ~~~--~------------~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~ 146 (607)
... + .....+.|||||+.|++...+++... .+.....+. ........ .+++.
T Consensus 153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~----------~~~~~~~~~~~~~~~~~~~--~~~~~ 220 (470)
T d2bgra1 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP----------LIEYSFYSDESLQYPKTVR--VPYPK 220 (470)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC----------EEEEEECCSTTCSSCEEEE--EECCB
T ss_pred CCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc----------eEEEEeeccCCCCCCeeee--ecccc
Confidence 110 0 01235679999876665532222110 000000000 00000000 01111
Q ss_pred cccceeeeccceEEEEeC-CCCeeec------C------CCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEE
Q 007338 147 DESLFDYYTTAQLVLGSL-DGTAKDF------G------TPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (607)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~-~g~~~~l------t------~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 212 (607)
.... .....++++++ .+....+ . ... .+..+.|+++++.+++...+.. .. . ...++
T Consensus 221 ~g~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~-~~-~-----~~~~~ 290 (470)
T d2bgra1 221 AGAV---NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ-NY-S-----VMDIC 290 (470)
T ss_dssp TTSC---CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST-TE-E-----EEEEE
T ss_pred cccc---CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccC-Cc-e-----EEEEE
Confidence 1100 12346788887 3332111 1 112 3357899999876665543321 10 0 12567
Q ss_pred EEeCCCCeeEEeccCCCCCCCCccccccc-CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCc
Q 007338 213 VWTTDGKLVRELCDLPPAEDIPVCYNSVR-EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP 291 (607)
Q Consensus 213 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 291 (607)
.+|..++..+.+......+....+ ... .....+.|+++++..+++....++ ..++++++ ..|...
T Consensus 291 ~~d~~tg~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~s~~dg---------~~~ly~~~---~~g~~~ 356 (470)
T d2bgra1 291 DYDESSGRWNCLVARQHIEMSTTG--WVGRFRPSEPHFTLDGNSFYKIISNEEG---------YRHICYFQ---IDKKDC 356 (470)
T ss_dssp EEETTTTEEEECGGGCEEEECSSS--CSSSSSCCCCEECTTSSEEEEEEECTTS---------CEEEEEEE---TTCSCC
T ss_pred EecCCCCcEEEEEEEeeeeeeccc--eeecccCCCceeeecCCCcEEEEeccCc---------CceeEEEe---ccCCce
Confidence 778888887776431111000000 000 112347888888866555533221 23566665 344467
Q ss_pred eeeeecCcccceeeEcCCCcEEEEEEecc---ccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEE
Q 007338 292 EILHKLDLRFRSVSWCDDSLALVNETWYK---TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (607)
Q Consensus 292 ~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~---~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~ 368 (607)
+.++.....+..+ ++.|+..+++..... ....+||.++++++ ...++|+..-... ..+...+++||||++++
T Consensus 357 ~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~---~~~~~s~~fSpdgky~~ 431 (470)
T d2bgra1 357 TFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPE---RCQYYSVSFSKEAKYYQ 431 (470)
T ss_dssp EESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTT---TBCBEEEEECTTSSEEE
T ss_pred eeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC-CceeEecccccCC---CCCEEEEEECCCCCEEE
Confidence 7777666555544 555666655544322 24568999999985 3456664210000 00111278999999877
Q ss_pred EEeee
Q 007338 369 AKIKK 373 (607)
Q Consensus 369 ~~~~~ 373 (607)
.....
T Consensus 432 ~~~s~ 436 (470)
T d2bgra1 432 LRCSG 436 (470)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 66543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.40 E-value=9.7e-12 Score=123.66 Aligned_cols=190 Identities=13% Similarity=0.048 Sum_probs=126.6
Q ss_pred ccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
...+.||| ||++|||.+. .+||++|+++|+.++++. .. . +..+.||||++.|++....
T Consensus 5 ~~~~~fSP~dG~~~a~~~~-----------g~v~v~d~~~~~~~~~~~-~~-~----v~~~~~spDg~~l~~~~~~---- 63 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSR-----------GQAFIQDVSGTYVLKVPE-PL-R----IRYVRRGGDTKVAFIHGTR---- 63 (360)
T ss_dssp GGEEEEEECGGGCEEEEET-----------TEEEEECTTSSBEEECSC-CS-C----EEEEEECSSSEEEEEEEET----
T ss_pred hhcccccCCCCCEEEEEEC-----------CeEEEEECCCCcEEEccC-CC-C----EEEEEECCCCCEEEEEEcC----
Confidence 45578999 9999999762 489999999999988852 22 2 6789999999887764210
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i 189 (607)
....|+++++ +|+.+++... ..+..++|||||++|
T Consensus 64 -------------------------------------------~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l 100 (360)
T d1k32a3 64 -------------------------------------------EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100 (360)
T ss_dssp -------------------------------------------TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred -------------------------------------------CCCEEEEEECCCCcEEEeeCCCceEEeeeeccccccc
Confidence 0124677888 5677777654 356789999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
++.... ..+++|++.+++...+.... ......++|||||+. |++.........
T Consensus 101 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~spdg~~-la~~~~~~~~~~- 153 (360)
T d1k32a3 101 VVANDR-------------FEIMTVDLETGKPTVIERSR------------EAMITDFTISDNSRF-IAYGFPLKHGET- 153 (360)
T ss_dssp EEEETT-------------SEEEEEETTTCCEEEEEECS------------SSCCCCEEECTTSCE-EEEEEEECSSTT-
T ss_pred ceeccc-------------cccccccccccceeeeeecc------------cccccchhhccceee-eeeeccccccce-
Confidence 988642 36889999988776654311 123356999999984 444433322211
Q ss_pred cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEE
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~ 317 (607)
.......+.+++. ..+ +...++........+.|+|||+.|++..
T Consensus 154 -~~~~~~~~~v~d~--~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 154 -DGYVMQAIHVYDM--EGR-KIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp -CSCCEEEEEEEET--TTT-EEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred -eeccccceeeecc--ccC-ceeeecccccccccccccCCCCEEEEEe
Confidence 1122234555553 222 3344444455567789999999887654
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.5e-12 Score=121.07 Aligned_cols=102 Identities=10% Similarity=0.008 Sum_probs=72.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC-ceec
Q 007338 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIG 568 (607)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~-~~~g 568 (607)
.||.+|+|+||+|++|+++||+ |+||++|+|+.. +. ....|. ..+..++||++||+|+. ++. ++.+
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~--Pviv~~HGGp~~------~~--~~~~~~--~~~~~~~la~~G~~vv~-~d~rGs~~ 76 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHY--PLLLVVDGTPGS------QS--VAEKFE--VSWETVMVSSHGAVVVK-CDGRGSGF 76 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCE--EEEEECCCCTTC------CC--CCCCCC--CSHHHHHHHTTCCEEEC-CCCTTCSS
T ss_pred eCCeEEEEEEEECCCcCCCCce--eEEEEEcCCccc------cC--cCCCcC--cchHHHHHhcCCcEEEE-eccccccc
Confidence 5999999999999999999877 999998864210 00 011121 12346789999999998 432 1222
Q ss_pred cCCC----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 569 EGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 569 ~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+|.. ...+++...++|++++|+||+++..+|.+++.
T Consensus 77 ~g~~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~ 116 (258)
T d1xfda2 77 QGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVA 116 (258)
T ss_dssp SHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEE
T ss_pred cchhHhhhhhccchhHHHHHHHHhhhhhccccccccccee
Confidence 3322 34445567799999999999999999999874
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.16 E-value=2.1e-11 Score=116.22 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=78.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl 559 (607)
+.|.|.|+..||.+|.++||+|++|+++||| |+||++|+|+ +++. ....... +..++++++||+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk~--P~iv~~HGGp------~~~~-----~~~~~~~~~~~~~~a~~g~~V~ 68 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFDKSKKY--PLLLDVYAGP------CSQK-----ADTVFRLNWATYLASTENIIVA 68 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCCTTSCE--EEEEECCCCT------TCCC-----CCCCCCCSHHHHHHHTTCCEEE
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcCCCCCe--eEEEEEcCCC------Cccc-----CCCccCcCHHHHHHhcCCcEEE
Confidence 4688999999999999999999999999987 9999988642 1111 1111111 23457889999999
Q ss_pred eCCCCceeccCCC-------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 560 AGPSIPIIGEGLW-------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g~g~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. ++. +|.+.. .+.+|+...+.++.++++|++++..+|.+++
T Consensus 69 ~-~d~--rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i 116 (258)
T d2bgra2 69 S-FDG--RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRI 116 (258)
T ss_dssp E-ECC--TTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred e-ecc--cccCCcchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccc
Confidence 8 332 332221 3445666678889999999999999999874
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.06 E-value=7.3e-08 Score=92.21 Aligned_cols=246 Identities=15% Similarity=0.075 Sum_probs=135.9
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (607)
|.+.|++ +++...-- +.+.......|||||++|+.... ....|.++|+++++..........
T Consensus 14 v~v~D~~----t~~~~~~i--~~g~~p~~va~spdG~~l~v~~~---------~~~~i~v~d~~t~~~~~~~~~~~~--- 75 (301)
T d1l0qa2 14 ISVIDVT----SNKVTATI--PVGSNPMGAVISPDGTKVYVANA---------HSNDVSIIDTATNNVIATVPAGSS--- 75 (301)
T ss_dssp EEEEETT----TTEEEEEE--ECSSSEEEEEECTTSSEEEEEEG---------GGTEEEEEETTTTEEEEEEECSSS---
T ss_pred EEEEECC----CCeEEEEE--ECCCCceEEEEeCCCCEEEEEEC---------CCCEEEEEECCCCceeeeeecccc---
Confidence 7777876 55443322 22335678899999999865543 245799999999876544322221
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-C
Q 007338 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D 165 (607)
Q Consensus 87 ~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 165 (607)
...+.|+++++.++..... ...+.+++. +
T Consensus 76 --~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~ 105 (301)
T d1l0qa2 76 --PQGVAVSPDGKQVYVTNMA------------------------------------------------SSTLSVIDTTS 105 (301)
T ss_dssp --EEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEETTT
T ss_pred --ccccccccccccccccccc------------------------------------------------cceeeeccccc
Confidence 4578899997766654211 112333344 3
Q ss_pred CC-eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCC
Q 007338 166 GT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (607)
Q Consensus 166 g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (607)
++ ...+........+.++|||+++++.... ...+.+++..++........ ...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-------------~~~~ 160 (301)
T d1l0qa2 106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSV-------------GRSP 160 (301)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEEC-------------CSSE
T ss_pred ceeeeeccccccceEEEeecCCCeeeeeecc------------ccceeeeeccccceeeeccc-------------CCCc
Confidence 32 2223333344578899999999888643 12577888877654443210 1223
Q ss_pred CcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccce
Q 007338 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (607)
Q Consensus 245 ~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 324 (607)
..+.|+||++. +++...+.. .+.+... ... +.............+.|++++..++.... +....
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~~~v~~~-~~~~~ 224 (301)
T d1l0qa2 161 KGIAVTPDGTK--VYVANFDSM----------SISVIDT--VTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNV-DKYFN 224 (301)
T ss_dssp EEEEECTTSSE--EEEEETTTT----------EEEEEET--TTT-EEEEEEECSSEEEEEEECTTSSEEEEEEE-CSSCC
T ss_pred eEEEeeccccc--eeeeccccc----------ccccccc--cce-eeeecccccCCcceeeccccccccccccc-cceee
Confidence 45788998873 222221111 1222111 111 11122222334556889999886433221 12234
Q ss_pred EEEEEcCCCCCCCceEee--eccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 325 RTWLVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 325 ~l~~~dl~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.|+++|+.+. +....+ ...+.. +.|+|||+.+++...
T Consensus 225 ~v~v~D~~t~--~~~~~~~~~~~~~~---------va~spdg~~l~va~~ 263 (301)
T d1l0qa2 225 TVSMIDTGTN--KITARIPVGPDPAG---------IAVTPDGKKVYVALS 263 (301)
T ss_dssp EEEEEETTTT--EEEEEEECCSSEEE---------EEECTTSSEEEEEET
T ss_pred eeeeeecCCC--eEEEEEcCCCCEEE---------EEEeCCCCEEEEEEC
Confidence 7889999873 222212 222333 789999998877653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.98 E-value=2.1e-07 Score=91.43 Aligned_cols=314 Identities=11% Similarity=0.094 Sum_probs=155.7
Q ss_pred EEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCc
Q 007338 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (607)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~ 116 (607)
..||||+++++. ..... ....++|++|+++|+......... ...+.||||++.|+++....
T Consensus 8 a~spdg~~~~v~-~~~~~----~~~~~v~v~D~~tg~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~-------- 68 (355)
T d2bbkh_ 8 APAPDARRVYVN-DPAHF----AAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVF-------- 68 (355)
T ss_dssp CCCCCTTEEEEE-ECGGG----CSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEE--------
T ss_pred eeCCCCCEEEEE-ecccC----CCcCeEEEEECCCCcEEEEEECCC------CCceEEcCCCCEEEEEeCCC--------
Confidence 458999998554 32110 345789999999998654332211 33689999988766542100
Q ss_pred cCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-c--CCC------CceeeeeeCCCC
Q 007338 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-F--GTP------AVYTAVEPSPDQ 186 (607)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l--t~~------~~~~~~~~SpDg 186 (607)
. +... ......|.++|+ +++... + ... .....+.|||||
T Consensus 69 --------------~----~~~~-------------g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 117 (355)
T d2bbkh_ 69 --------------S----RIAR-------------GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117 (355)
T ss_dssp --------------E----ETTE-------------EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred --------------c----cccc-------------cCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence 0 0000 001346777787 554332 2 111 112367899999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~ 266 (607)
+++++..... ...+++++..+++.......+..... ........+.+++||+.. ++.....+
T Consensus 118 ~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dg~~~--~v~~~~~~ 179 (355)
T d2bbkh_ 118 KTLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHI-----FPTAPDTFFMHCRDGSLA--KVAFGTEG 179 (355)
T ss_dssp SEEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEE-----EEEETTEEEEEETTSCEE--EEECCSSS
T ss_pred CeeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceE-----eecCCcceEEEcCCCCEE--EEEecCCC
Confidence 9998875432 12567788887765443221110000 000111237788888742 22211111
Q ss_pred CCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee--ec
Q 007338 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DR 344 (607)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~--~~ 344 (607)
. +.+.+. ... . .........+.+++++..+++... ...++++++.++ ....+. ..
T Consensus 180 ~----------~~~~~~--~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~--~~~~~~~~~~ 236 (355)
T d2bbkh_ 180 T----------PEITHT--EVF----H-PEDEFLINHPAYSQKAGRLVWPTY----TGKIHQIDLSSG--DAKFLPAVEA 236 (355)
T ss_dssp C----------CEEEEC--CCC----S-CTTSCBCSCCEEETTTTEEEEEBT----TSEEEEEECTTS--SCEECCCEES
T ss_pred e----------EEEEec--ccc----c-ceecceeeeccccCCCCeEEEecC----CCeEEEEecCCC--cEEEEeccCC
Confidence 1 111110 000 0 001112344667777776665432 236888888873 333331 11
Q ss_pred cc----cccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccce
Q 007338 345 VF----ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (607)
Q Consensus 345 ~~----~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (607)
.. .......+...+.++++++.+++...... .. ........+..+|..+++....+... .
T Consensus 237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~---~~--------~~~~~~~~v~v~d~~t~~~~~~~~~~-----~ 300 (355)
T d2bbkh_ 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD---EW--------RHKTASRFVVVLDAKTGERLAKFEMG-----H 300 (355)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC---TT--------CTTSCEEEEEEEETTTCCEEEEEEEE-----E
T ss_pred cccceEeeeeeccceEEEEEeCCCCeEEEEeccCC---ce--------eecCCCCeEEEEeCCCCcEEEEecCC-----C
Confidence 10 00011112223677888888776654321 00 00111123445677667644322111 1
Q ss_pred eeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceee
Q 007338 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (607)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~ 466 (607)
.+.. ..|+|||+.+++.....+ ..++++|+.+++..+
T Consensus 301 ~~~~-------~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 301 EIDS-------INVSQDEKPLLYALSTGD--KTLYIHDAESGEELR 337 (355)
T ss_dssp EECE-------EEECCSSSCEEEEEETTT--TEEEEEETTTCCEEE
T ss_pred CEEE-------EEEcCCCCeEEEEEECCC--CEEEEEECCCCCEEE
Confidence 1111 358999987655544333 579999998887543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.95 E-value=1.2e-06 Score=83.28 Aligned_cols=273 Identities=9% Similarity=0.033 Sum_probs=146.3
Q ss_pred EEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCee
Q 007338 45 IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKI 124 (607)
Q Consensus 45 laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (607)
.||+.+. +...|.++|+++++..+....... ...+.|+||++.+|.+..
T Consensus 3 ~~yV~~~--------~~~~v~v~D~~t~~~~~~i~~g~~-----p~~va~spdG~~l~v~~~------------------ 51 (301)
T d1l0qa2 3 FAYIANS--------ESDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANA------------------ 51 (301)
T ss_dssp EEEEEET--------TTTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEG------------------
T ss_pred EEEEEEC--------CCCEEEEEECCCCeEEEEEECCCC-----ceEEEEeCCCCEEEEEEC------------------
Confidence 4677653 345799999999986544333221 457899999987765410
Q ss_pred eecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCceEEEEEccCCCcccc
Q 007338 125 QSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202 (607)
Q Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~ 202 (607)
....|.++|+ +++ ...+........+.+++|++++++....
T Consensus 52 ------------------------------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 94 (301)
T d1l0qa2 52 ------------------------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------- 94 (301)
T ss_dssp ------------------------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT-------
T ss_pred ------------------------------CCCEEEEEECCCCceeeeeeccccccccccccccccccccccc-------
Confidence 1235666777 453 3334333344678999999999887543
Q ss_pred CCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEecc
Q 007338 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQP 282 (607)
Q Consensus 203 ~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (607)
...+.+++..+++....... ........++|||...+ +.. .. ...+.+++
T Consensus 95 -----~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~dg~~~~--~~~--~~--------~~~~~~~~ 144 (301)
T d1l0qa2 95 -----SSTLSVIDTTSNTVAGTVKT-------------GKSPLGLALSPDGKKLY--VTN--NG--------DKTVSVIN 144 (301)
T ss_dssp -----TTEEEEEETTTTEEEEEEEC-------------SSSEEEEEECTTSSEEE--EEE--TT--------TTEEEEEE
T ss_pred -----cceeeecccccceeeeeccc-------------cccceEEEeecCCCeee--eee--cc--------ccceeeee
Confidence 23577888887754443221 11223588999998422 111 11 11222222
Q ss_pred CCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee--eccccccccCCCCCCeee
Q 007338 283 AEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTR 360 (607)
Q Consensus 283 ~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~ 360 (607)
. ..+ ..............+.|+||+..++..... . ..++..+.... ...... ...... +.+
T Consensus 145 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~ 207 (301)
T d1l0qa2 145 T--VTK-AVINTVSVGRSPKGIAVTPDGTKVYVANFD-S--MSISVIDTVTN--SVIDTVKVEAAPSG---------IAV 207 (301)
T ss_dssp T--TTT-EEEEEEECCSSEEEEEECTTSSEEEEEETT-T--TEEEEEETTTT--EEEEEEECSSEEEE---------EEE
T ss_pred c--ccc-ceeeecccCCCceEEEeeccccceeeeccc-c--cccccccccce--eeeecccccCCcce---------eec
Confidence 1 111 111111222334567899998865544321 1 23444554442 211111 111222 678
Q ss_pred CCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCE
Q 007338 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLK 440 (607)
Q Consensus 361 ~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 440 (607)
+++|+.+++...+.. ... +..+|+.+++........ ..+.. ..|+|||++
T Consensus 208 ~~~g~~~~v~~~~~~--~~~----------------v~v~D~~t~~~~~~~~~~-----~~~~~-------va~spdg~~ 257 (301)
T d1l0qa2 208 NPEGTKAYVTNVDKY--FNT----------------VSMIDTGTNKITARIPVG-----PDPAG-------IAVTPDGKK 257 (301)
T ss_dssp CTTSSEEEEEEECSS--CCE----------------EEEEETTTTEEEEEEECC-----SSEEE-------EEECTTSSE
T ss_pred cccccccccccccce--eee----------------eeeeecCCCeEEEEEcCC-----CCEEE-------EEEeCCCCE
Confidence 899998776654311 111 224677666543322111 11222 358999998
Q ss_pred EEEEeecccccceEEEEecCCCcee
Q 007338 441 ILTSKESKTEITQYHILSWPLKKSS 465 (607)
Q Consensus 441 ~v~~~ss~~~p~~l~~~~~~~~~~~ 465 (607)
++++.+.. ..+.++|+.+++..
T Consensus 258 l~va~~~~---~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 258 VYVALSFC---NTVSVIDTATNTIT 279 (301)
T ss_dssp EEEEETTT---TEEEEEETTTTEEE
T ss_pred EEEEECCC---CeEEEEECCCCeEE
Confidence 76654332 36889998887643
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.94 E-value=7.6e-10 Score=105.27 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.|+|++.||.+|+|+||+|++-. + |.|+||++|+|+. .+. ...| ....+.||++||+|+.
T Consensus 11 ~~~~v~~~s~dG~~i~~~l~~p~~~~--~--~~Pviv~~HGG~~------~~~---~~~~----~~~~~~la~~G~~v~~ 73 (260)
T d2hu7a2 11 GSRLVWVESFDGSRVPTYVLESGRAP--T--PGPTVVLVHGGPF------AED---SDSW----DTFAASLAAAGFHVVM 73 (260)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTSC--S--SEEEEEEECSSSS------CCC---CSSC----CHHHHHHHHHTCEEEE
T ss_pred ceEEEEEECCCCCEEEEEEEeCCCCC--C--CceEEEEECCCCc------cCC---Cccc----cHHHHHHHhhcccccc
Confidence 78999999999999999999997632 3 4599999885421 110 0111 2346899999999998
Q ss_pred CCCCcee-ccCCC----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 561 GPSIPII-GEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 561 ~~~~~~~-g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
++.+.. ++|.. ....++...+.|++++++||++.+..+.-.++
T Consensus 74 -~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~ 121 (260)
T d2hu7a2 74 -PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIM 121 (260)
T ss_dssp -ECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred -ceeeeccccccccccccccccchhhhhhhcccccccccccccceeecc
Confidence 544222 22222 22234457788999999999998865444444
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.93 E-value=1e-06 Score=87.13 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=43.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......+||||+++++..... .....+||++|.++|+......... ...+.|||||+.+++.
T Consensus 22 p~~~~a~spdg~~~~~~~~~~-----~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va 83 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAH-----HSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALA 83 (373)
T ss_pred CccccccCCCCCEEEEEcccc-----cCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEE
Confidence 467888999999987754321 1455789999999998754322111 2368999999887775
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=8.8e-07 Score=85.80 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=48.9
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|.+-++. ..++.+.+..+.....+...+|||||++|+..... ++.-.+|.++..++..+.+.....
T Consensus 15 ~I~v~~~~---~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~-------d~~i~~~~i~~~~~~~~~~~~~~~--- 81 (333)
T d1ri6a_ 15 QIHVWNLN---HEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP-------EFRVLAYRIAPDDGALTFAAESAL--- 81 (333)
T ss_dssp EEEEEEEC---TTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT-------TTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred cEEEEEEc---CCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC-------CCeEEEEEEeCCCCcEEEeeeccc---
Confidence 46666765 25555544423333468899999999998655421 333344444444444443321111
Q ss_pred cccccceEEecCCeEEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~ 104 (607)
......+.|+||++.++..
T Consensus 82 ~~~p~~l~~spDg~~l~v~ 100 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVG 100 (333)
T ss_dssp SSCCSEEEECTTSSEEEEE
T ss_pred CCCceEEEEcCCCCEEeec
Confidence 1114468999999987775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.85 E-value=2.3e-06 Score=82.64 Aligned_cols=154 Identities=14% Similarity=0.020 Sum_probs=90.1
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
..|.+-|++ +++.......+. ......+.+||||++|+.... ....|+++|+++++...-......
T Consensus 11 ~~v~v~D~~----s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---------~~~~v~v~D~~t~~~~~~~~~~~~ 77 (337)
T d1pbyb_ 11 DKLVVIDTE----KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---------KSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETT----TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---------TTTEEEEEETTTCCEEEEEECCBT
T ss_pred CEEEEEECC----CCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEEEecCCC
Confidence 367888887 565544332332 235789999999998766543 236799999999987543222211
Q ss_pred c-ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 84 C-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 84 ~-~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. .......+.|+||++.++....... . ... ........+.++
T Consensus 78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~---------------------~----~~~------------~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 78 EERVKSLFGAALSPDGKTLAIYESPVR---------------------L----ELT------------HFEVQPTRVALY 120 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEE---------------------E----CSS------------CEEECCCEEEEE
T ss_pred cccccceeeEEEcCCCcEEEEeecCCc---------------------c----eee------------eccccccceeec
Confidence 1 0112347899999887766421100 0 000 000123466677
Q ss_pred eC-CCCe-eecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 163 SL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 163 ~~-~g~~-~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
+. +++. ..+........+.+||||++++.... ++.++|..+++...
T Consensus 121 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---------------~~~~~d~~~~~~~~ 168 (337)
T d1pbyb_ 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR---------------DLHVMDPEAGTLVE 168 (337)
T ss_dssp ETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS---------------SEEEEETTTTEEEE
T ss_pred cccCCeEEEeccccCCceEEEEcCCCCEEEEEcC---------------CcceeeeecCcEEE
Confidence 77 4543 33333344567899999999987631 45678887765544
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.5e-06 Score=82.21 Aligned_cols=234 Identities=14% Similarity=0.135 Sum_probs=126.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeE
Q 007338 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
+.+..+.-...+...+|||||++||-.. + ..|.+||+..++.. .+...........+..+.|+||+++
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~latg~---------d--g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~ 111 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRHVYTGG---------K--GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC---------B--SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred eEEEECCCCCcEEEEEECCCCCEEEEEE---------C--CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE
Confidence 3343333333688899999999987542 2 35888899865432 2211111111123568899999888
Q ss_pred EEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC-CC---eeecCC-CC
Q 007338 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT---AKDFGT-PA 175 (607)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~lt~-~~ 175 (607)
|+....+ ..|.++++. .+ ...+.. ..
T Consensus 112 l~s~~~d-------------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~ 142 (337)
T d1gxra_ 112 LIVGGEA-------------------------------------------------STLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp EEEEESS-------------------------------------------------SEEEEEECCCC--EEEEEEECSSS
T ss_pred EEEeecc-------------------------------------------------cccccccccccccccccccccccc
Confidence 7764210 123333331 11 112222 22
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
.+..+.|+||+..++..... ..+.++++.+++....... ....+..+.|++++..
T Consensus 143 ~v~~~~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~~------------~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 143 ACYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQG------------HTDGASCIDISNDGTK 197 (337)
T ss_dssp CEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECC------------CSSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccc-------------ccccccccccccccccccc------------cccccccccccccccc
Confidence 45678899999888766432 3688899988765543321 0112235789999873
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCC
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~ 335 (607)
++. .. ....+.+++. ..+ +..........+..++|+|++..++.... . ..+.++|+.+.
T Consensus 198 -~~~-~~-----------~d~~v~i~d~--~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d--~~i~i~d~~~~- 256 (337)
T d1gxra_ 198 -LWT-GG-----------LDNTVRSWDL--REG-RQLQQHDFTSQIFSLGYCPTGEWLAVGME--S--SNVEVLHVNKP- 256 (337)
T ss_dssp -EEE-EE-----------TTSEEEEEET--TTT-EEEEEEECSSCEEEEEECTTSSEEEEEET--T--SCEEEEETTSS-
T ss_pred -ccc-cc-----------cccccccccc--ccc-eeecccccccceEEEEEcccccccceecc--c--ccccccccccc-
Confidence 221 11 1123445443 222 11122233445677899999987765432 2 25666787763
Q ss_pred CCceEee--eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 336 VAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 336 ~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+..... ...+.. +.|+|+|+.++...
T Consensus 257 -~~~~~~~~~~~i~~---------v~~s~~g~~l~s~s 284 (337)
T d1gxra_ 257 -DKYQLHLHESCVLS---------LKFAYCGKWFVSTG 284 (337)
T ss_dssp -CEEEECCCSSCEEE---------EEECTTSSEEEEEE
T ss_pred -ccccccccccccce---------EEECCCCCEEEEEe
Confidence 222222 122332 78999999776543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.78 E-value=8.8e-07 Score=87.90 Aligned_cols=314 Identities=7% Similarity=-0.070 Sum_probs=155.0
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC-CCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRD 111 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~-~~~~ 111 (607)
......+|||++.+...... ..+..+||++|.++++....+.... ...+.|+||++.+++.... .+..
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~-----~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~~ 90 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAY-----FAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTT-----TCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTTT
T ss_pred ccccccCCCCcceeEEeecc-----CCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCcccc
Confidence 33445678888754433211 1466899999999999876654332 3468999998876664211 0000
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecC--CC------Cceeeee
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG--TP------AVYTAVE 181 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt--~~------~~~~~~~ 181 (607)
. |. ....|.++|. +++.. .+. .. .....+.
T Consensus 91 ----------------~-g~-----------------------~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a 130 (368)
T d1mdah_ 91 ----------------K-GK-----------------------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp ----------------S-SS-----------------------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred ----------------c-cc-----------------------cCCeEEEEECCCCcEeeeecCCccceecccCCccceE
Confidence 0 00 1235667777 55432 221 11 1123689
Q ss_pred eCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
|||||++|++.... +..+.+||+.+++.......+....+ ........+..++||+. .++.
T Consensus 131 ~SpDGk~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~Dg~~--~~~~ 191 (368)
T d1mdah_ 131 NCASSACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFHI-----HPGAAATHYLGSCPASL--AASD 191 (368)
T ss_dssp ECTTSSCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCCC-----EEEETTEEECCCCTTSC--EEEE
T ss_pred ECCCCCEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcceE-----ccCCCceEEEEcCCCCE--EEEE
Confidence 99999999987532 23688999998876554332211100 00011123566777762 2222
Q ss_pred eecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEe
Q 007338 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l 341 (607)
..+.+.. ..... ...............+.+++..+... ..+++.+++.+. ....+
T Consensus 192 ~~~~~~~---------~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~v~~~~~~~~--~~~~~ 246 (368)
T d1mdah_ 192 LAAAPAA---------AGIVG--------AQCTGAQNCSSQAAQANYPGMLVWAV------ASSILQGDIPAA--GATMK 246 (368)
T ss_dssp CCSSCCC---------CEECC--------CCSCTTSCBCSCCEEETTTTEEEECB------SSCCEEEECCSS--CCEEE
T ss_pred ecCCcee---------eeeee--------cccccccccceeecccccCcEEEEec------CCCEEEEeecCC--ceEEE
Confidence 2111110 00000 00000112223345677777654332 135677777662 33333
Q ss_pred e--eccc----cccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCC
Q 007338 342 F--DRVF----ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (607)
Q Consensus 342 ~--~~~~----~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (607)
. .... .......+...+.++++++.+++...... . ........+..+|.++++....+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~--~----------~~~~~~~~v~v~D~~t~~~~~~~~~~- 313 (368)
T d1mdah_ 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--R----------SCLAAAENTSSVTASVGQTSGPISNG- 313 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS--S----------CTTSCEEEEEEEESSSCCEEECCEEE-
T ss_pred eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC--c----------eeecCCceEEEEECCCCcEeEEecCC-
Confidence 1 1100 00000012223677888887766544311 0 00011123445777777543221110
Q ss_pred cccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeE
Q 007338 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (607)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~L 467 (607)
..+. ...+++||+.++|...... ..|+++|..+++..+.
T Consensus 314 ----~~~~-------~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 314 ----HDSD-------AIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSS 352 (368)
T ss_dssp ----EEEC-------EEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEE
T ss_pred ----Ccee-------EEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEE
Confidence 1111 1368999987665554433 4699999888875543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.78 E-value=3.6e-06 Score=81.36 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=42.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec-ccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l-t~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+++|||+.|||... ..++++|+++++...+ +.+.. .+..+.|+||+++++..
T Consensus 19 ~~~~~a~~~~g~~l~~~~~-----------~~v~i~~~~~~~~~~~~~~H~~-----~v~~~~~sp~g~~latg 76 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNG-----------TSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASG 76 (311)
T ss_dssp CCCCCEECTTSSEEEEEET-----------TEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEE
T ss_pred CeEEEEEcCCCCEEEEEeC-----------CEEEEEECCCCceeEEEcCCCC-----CEEEEEEeCCCCeEecc
Confidence 3456799999999999742 4689999998876544 33332 26789999999988764
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.76 E-value=1.3e-08 Score=97.22 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=71.8
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC--chhHHHhccCeEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP--TSSLIFLARRFAV 558 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~--~~~q~la~~GY~V 558 (607)
++|.|+|++.||.+|+|+|++|+++++++++ |+||++|+| |+......+ ...+.++..||++
T Consensus 6 ~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~--P~iv~~HGG--------------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (280)
T d1qfma2 6 QTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH--PAFLYGYGG--------------FNISITPNYSVSRLIFVRHMGGVL 69 (280)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCCCSSCS--CEEEECCCC--------------TTCCCCCCCCHHHHHHHHHHCCEE
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCCCCCCCe--EEEEEECCC--------------CcccCCCCcchhhhhhhcccceee
Confidence 5789999999999999999999999988866 999998854 221111111 2245777778888
Q ss_pred EeCCCCceeccCC----CCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 559 LAGPSIPIIGEGL----WSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 559 l~~~~~~~~g~g~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+..........+. .....+.....++...++.+++.+...+...+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1qfma2 70 AVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRL 118 (280)
T ss_dssp EEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGE
T ss_pred eccccccccccchhhhhcccccccccccchhhhhhhhhhhhcccccccc
Confidence 7622211111111 13344446667788888888888888777654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.72 E-value=3e-06 Score=81.87 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=120.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee---ecccCCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPD 82 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~---~lt~~~~ 82 (607)
.+++.++.. ....+.+++. ...+....|||||++||.... ...|.++|+.+++.. .+..+..
T Consensus 39 ~v~i~~~~~---~~~~~~~~~H--~~~v~~~~~sp~g~~latg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (311)
T d1nr0a1 39 SVYTVPVGS---LTDTEIYTEH--SHQTTVAKTSPSGYYCASGDV----------HGNVRIWDTTQTTHILKTTIPVFSG 103 (311)
T ss_dssp EEEEEETTC---SSCCEEECCC--SSCEEEEEECTTSSEEEEEET----------TSEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEEECCC---CceeEEEcCC--CCCEEEEEEeCCCCeEecccc----------CceEeeeeeeccccccccccccccC
Confidence 477888761 3344444433 236999999999999876542 246888899876532 1211111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+..+.|+|++++++....... ...++ +
T Consensus 104 -----~v~~v~~s~d~~~l~~~~~~~~---------------------------------------------~~~~v--~ 131 (311)
T d1nr0a1 104 -----PVKDISWDSESKRIAAVGEGRE---------------------------------------------RFGHV--F 131 (311)
T ss_dssp -----CEEEEEECTTSCEEEEEECCSS---------------------------------------------CSEEE--E
T ss_pred -----cccccccccccccccccccccc---------------------------------------------ccccc--c
Confidence 2668899999887776421100 00122 2
Q ss_pred eC-CCC-eeecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccc
Q 007338 163 SL-DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (607)
Q Consensus 163 ~~-~g~-~~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (607)
++ +++ ...+.. ...+..++|+|++++++++... ...|.+||+.+++........
T Consensus 132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~------------d~~i~i~d~~~~~~~~~~~~~----------- 188 (311)
T d1nr0a1 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVAIFEGPPFKFKSTFGEH----------- 188 (311)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET------------TSCEEEEETTTBEEEEEECCC-----------
T ss_pred ccccccccccccccccccccccccccceeeeccccc------------ccccccccccccccccccccc-----------
Confidence 22 232 223322 2345688999999987665432 136889999987655543210
Q ss_pred ccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee-------eecCcccceeeEcCCCcE
Q 007338 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRFRSVSWCDDSLA 312 (607)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l-------~~~~~~~~~~~ws~Dg~~ 312 (607)
...+..+.|+|+++. ++ ... .. ..+.+++. ..+.....+ ......+..++|+|||..
T Consensus 189 -~~~i~~v~~~p~~~~-l~-~~~-~d----------~~v~~~d~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 189 -TKFVHSVRYNPDGSL-FA-STG-GD----------GTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp -SSCEEEEEECTTSSE-EE-EEE-TT----------SCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred -cccccccccCccccc-cc-ccc-cc----------cccccccc--ccccccccccccccccccccccccccccCCCCCE
Confidence 111235899999983 22 111 11 12333332 111011111 112234668899999998
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 007338 313 LVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~~ 333 (607)
|+.... ++ .|.+.|+.+
T Consensus 253 l~tgs~--Dg--~v~iwd~~t 269 (311)
T d1nr0a1 253 IASASA--DK--TIKIWNVAT 269 (311)
T ss_dssp EEEEET--TS--EEEEEETTT
T ss_pred EEEEeC--CC--eEEEEECCC
Confidence 776532 22 466678877
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.69 E-value=7.7e-06 Score=82.70 Aligned_cols=60 Identities=5% Similarity=-0.095 Sum_probs=44.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....+.+++|.+.++++... +...|.++|+++++.......... +..+.+||||+.++..
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~--------~dg~v~vwD~~t~~~~~~l~~g~~-----~~~vafSPDGk~l~~~ 79 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLR--------DAGQIALVDGDSKKIVKVIDTGYA-----VHISRMSASGRYLLVI 79 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEET--------TTTEEEEEETTTCSEEEEEECCSS-----EEEEEECTTSCEEEEE
T ss_pred CCCcccccCCCCeEEEEEEc--------CCCEEEEEECCCCcEEEEEeCCCC-----eeEEEECCCCCEEEEE
Confidence 45667899999988887763 357889999999987543332221 5678999999988764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.1e-05 Score=78.43 Aligned_cols=222 Identities=11% Similarity=0.019 Sum_probs=121.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|||||+.|+.... ...|.++|+...+.+....... ....+..+.|+|++.+++.....
T Consensus 99 ~I~~v~~s~dg~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d---- 162 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGE----------ASTLSIWDLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCSD---- 162 (337)
T ss_dssp BEEEEEECTTSSEEEEEES----------SSEEEEEECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEETT----
T ss_pred cEEEEEEcCCCCEEEEeec----------cccccccccccccccccccccc--ccccccccccccccccccccccc----
Confidence 5788999999999876543 2467888887654332211111 01114567899998877764210
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-cC-CCCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG-TPAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-lt-~~~~~~~~~~SpDg~~ 188 (607)
..+.++++ +++... .. ....+..++|+|+++.
T Consensus 163 ---------------------------------------------~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 163 ---------------------------------------------GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ---------------------------------------------ccccccccccccccccccccccccccccccccccc
Confidence 12233333 232221 11 1234567899999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
++....+ ..+.+||+.+++.-..... ...+..+.|+|+++. ++ .. ...
T Consensus 198 ~~~~~~d-------------~~v~i~d~~~~~~~~~~~~-------------~~~i~~l~~~~~~~~-l~-~~-~~d--- 245 (337)
T d1gxra_ 198 LWTGGLD-------------NTVRSWDLREGRQLQQHDF-------------TSQIFSLGYCPTGEW-LA-VG-MES--- 245 (337)
T ss_dssp EEEEETT-------------SEEEEEETTTTEEEEEEEC-------------SSCEEEEEECTTSSE-EE-EE-ETT---
T ss_pred ccccccc-------------ccccccccccceeeccccc-------------ccceEEEEEcccccc-cc-ee-ccc---
Confidence 9887532 3688999987654322110 111235789999873 21 11 111
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeee--ccc
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVF 346 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~--~~~ 346 (607)
..+.+++. ..+ +..........+..+.|+|||..|+.... + ..|.++|+..+ +...... ..+
T Consensus 246 -------~~i~i~d~--~~~-~~~~~~~~~~~i~~v~~s~~g~~l~s~s~--D--g~i~iwd~~~~--~~~~~~~~~~~v 309 (337)
T d1gxra_ 246 -------SNVEVLHV--NKP-DKYQLHLHESCVLSLKFAYCGKWFVSTGK--D--NLLNAWRTPYG--ASIFQSKESSSV 309 (337)
T ss_dssp -------SCEEEEET--TSS-CEEEECCCSSCEEEEEECTTSSEEEEEET--T--SEEEEEETTTC--CEEEEEECSSCE
T ss_pred -------cccccccc--ccc-ccccccccccccceEEECCCCCEEEEEeC--C--CeEEEEECCCC--CEEEEccCCCCE
Confidence 23444443 111 22222233456778999999998776532 2 25666787773 2222222 122
Q ss_pred cccccCCCCCCeeeCCCCCEEEEEe
Q 007338 347 ENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.. +.|+|+|+.|+...
T Consensus 310 ~~---------~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 310 LS---------CDISVDDKYIVTGS 325 (337)
T ss_dssp EE---------EEECTTSCEEEEEE
T ss_pred EE---------EEEeCCCCEEEEEe
Confidence 22 78999999776543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.65 E-value=1.1e-05 Score=81.77 Aligned_cols=63 Identities=13% Similarity=0.282 Sum_probs=45.3
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
....++||||+++||+...+. .....|+++|+++|+....+- .. ...+.+.|++|++.+|++.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G-----~e~~~l~v~Dl~tg~~~~~~i-~~----~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASG-----SDWVTIKFMKVDGAKELPDVL-ER----VKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETT-----CSCEEEEEEETTTTEEEEEEE-EE----ECSCCEEECTTSSEEEEEE
T ss_pred ecceEecCCCCEEEEEecccc-----CchheeEEeccCcceeccccc-cc----ccccceEEcCCCCEEEEEE
Confidence 345689999999999987531 456899999999998643321 11 1136789999988777653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.62 E-value=1.3e-05 Score=81.02 Aligned_cols=82 Identities=15% Similarity=-0.008 Sum_probs=48.4
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc-cc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI-CL 85 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~-~~ 85 (607)
|.|-|+. +++...- ++.+.......|||||++|+. ..+ + ..|.++|+++++...+...... ..
T Consensus 44 v~vwD~~----t~~~~~~--l~~g~~~~~vafSPDGk~l~~-~~~-------d--~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 44 IALVDGD----SKKIVKV--IDTGYAVHISRMSASGRYLLV-IGR-------D--ARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp EEEEETT----TCSEEEE--EECCSSEEEEEECTTSCEEEE-EET-------T--SEEEEEETTSSSCEEEEEEECCSEE
T ss_pred EEEEECC----CCcEEEE--EeCCCCeeEEEECCCCCEEEE-EeC-------C--CCEEEEEccCCceeEEEEEeCCCCC
Confidence 5566765 5554333 233345788999999998754 443 2 4788999999875433211110 11
Q ss_pred cccccceEEecCCeEEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~ 104 (607)
.....++.|+|||+.++..
T Consensus 108 ~~~~~s~~~spDG~~l~v~ 126 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAG 126 (426)
T ss_dssp EEEEECCSTTCTTTEEEEE
T ss_pred cceEEeeeecCCCCEEEEe
Confidence 1112356788898876554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.62 E-value=1.6e-05 Score=78.23 Aligned_cols=91 Identities=13% Similarity=-0.133 Sum_probs=51.9
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..+|+.|.. +|+...- ++.. ....+.|||||++|++........-.......|.++|+++++...........
T Consensus 47 ~~v~v~D~~----tg~~~~~--~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 119 (373)
T d2madh_ 47 IQQWVLDAG----SGSILGH--VNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP 119 (373)
T ss_pred ceEEEEECC----CCCEEEE--EeCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc
Confidence 458888876 5655443 3333 34579999999999987643110000022357999999999876544332211
Q ss_pred cc---ccccceEEecCCeEEE
Q 007338 85 LN---AVFGSFVWVNNSTLLI 102 (607)
Q Consensus 85 ~~---~~~~~~~Wspd~~~l~ 102 (607)
.. .....+.|++|++.++
T Consensus 120 ~~~~~~~~~~~~~s~dg~~~~ 140 (373)
T d2madh_ 120 RFDVGPYSWMNANTPNNADLL 140 (373)
T ss_pred eeEeccCCCcEEEEeCCCcEE
Confidence 00 0112467777765443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.62 E-value=1.8e-06 Score=85.64 Aligned_cols=91 Identities=14% Similarity=-0.052 Sum_probs=56.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCc--ccccCCCceeEEEEECCCCceeecccCCC
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
.+||+.+.. +++....+.. . ....+.|||||+.|++...... ..+ .....|.++|+++++.......+.
T Consensus 46 ~~~~~~d~~----~~~~~~~~~~--~-~~~~~a~spDg~~i~~~~~~~~~~~~g--~~d~~v~v~D~~t~~~~~~i~~p~ 116 (368)
T d1mdah_ 46 TENWVSCAG----CGVTLGHSLG--A-FLSLAVAGHSGSDFALASTSFARSAKG--KRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEEETT----TTEEEEEEEE--C-TTCEEEECTTSSCEEEEEEEETTTTSS--SEEEEEEEECTTTCCEEEEEEETT
T ss_pred ceEEEEeCC----CCcEEEEEeC--C-CCCcceECCCCCEEEEEcccCcccccc--ccCCeEEEEECCCCcEeeeecCCc
Confidence 468888876 6766665422 2 3457999999999999865310 000 123569999999998754332221
Q ss_pred cc---ccccccceEEecCCeEEEEE
Q 007338 83 IC---LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 83 ~~---~~~~~~~~~Wspd~~~l~~~ 104 (607)
.. .......+.||||++.+++.
T Consensus 117 ~~~~~~g~~p~~~a~SpDGk~l~va 141 (368)
T d1mdah_ 117 APRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred cceecccCCccceEECCCCCEEEEE
Confidence 10 01113468999998866654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=6.9e-06 Score=83.35 Aligned_cols=83 Identities=14% Similarity=-0.053 Sum_probs=49.0
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc-c
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI-C 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~-~ 84 (607)
.+.|-|++ +++..... +.+......+|||||++|+.. .+ + ..+.++|+++++...+...+.+ .
T Consensus 43 ~v~v~D~~----t~~v~~~~--~~g~~~~~v~fSpDG~~l~~~-s~-------d--g~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 43 QIALIDGS----TYEIKTVL--DTGYAVHISRLSASGRYLFVI-GR-------D--GKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp EEEEEETT----TCCEEEEE--ECSSCEEEEEECTTSCEEEEE-ET-------T--SEEEEEETTSSSCCEEEEEECCSE
T ss_pred EEEEEECC----CCcEEEEE--eCCCCeeEEEECCCCCEEEEE-cC-------C--CCEEEEEeeCCCceEEEEEecCCC
Confidence 35566765 55554443 334468899999999998654 33 2 4688899988875433211111 0
Q ss_pred ccccccceEEecCCeEEEEE
Q 007338 85 LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~ 104 (607)
.......+.|||||+.++.+
T Consensus 107 ~~~~~~s~~~SpDG~~l~vs 126 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIAG 126 (432)
T ss_dssp EEEEEECCSTTCTTTEEEEE
T ss_pred CCCeEEecccCCCCCEEEEE
Confidence 01112245677898876654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.59 E-value=2.4e-06 Score=83.57 Aligned_cols=293 Identities=11% Similarity=-0.014 Sum_probs=133.7
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..+|+-|+. +|+..... +.+ ....++|||||+.|++................|+++|+++++...........
T Consensus 28 ~~v~v~D~~----tg~~~~~~--~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 28 TQQFVIDGE----AGRVIGMI--DGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp EEEEEEETT----TTEEEEEE--EEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECC----CCcEEEEE--ECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 458888876 66543322 223 34578999999999886542100000012357999999999875433221111
Q ss_pred ---ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccc-eeeecc-ceE
Q 007338 85 ---LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL-FDYYTT-AQL 159 (607)
Q Consensus 85 ---~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~l 159 (607)
.......+.|++|++.+++......... .......+.......... ... ........ ...... ..+
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~dg~~~ 171 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV-GVVDLEGKAFKRMLDVPD------CYH--IFPTAPDTFFMHCRDGSLA 171 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECSSSCEE-EEEETTTTEEEEEEECCS------EEE--EEEEETTEEEEEETTSCEE
T ss_pred eeecCCCCceEEEecCCCeeEEecCCCCcee-eeeecCCCcEeeEEecCC------cce--EeecCCcceEEEcCCCCEE
Confidence 1111346789999876665421111000 000011111111000000 000 00000000 001111 222
Q ss_pred EEEeC-CCCeeec--CC-----CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCC
Q 007338 160 VLGSL-DGTAKDF--GT-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (607)
Q Consensus 160 ~~~~~-~g~~~~l--t~-----~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (607)
++... .+....+ .. ........+++++..+++... ...++++++.++.+..+.......
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-------------TGKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp EEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-------------TSEEEEEECTTSSCEECCCEESSC
T ss_pred EEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC-------------CCeEEEEecCCCcEEEEeccCCcc
Confidence 22222 2222211 11 112234567778788877643 236889999888766653311110
Q ss_pred CCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCc
Q 007338 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (607)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~ 311 (607)
...........+...+.+++|++. + ++...+.... ......+.+.+++. .++.....+ ........++|||||+
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~-~-~~~~~~~~~~-~~~~~~~~v~v~d~--~t~~~~~~~-~~~~~~~~~a~spDG~ 312 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDR-I-YLLVDQRDEW-RHKTASRFVVVLDA--KTGERLAKF-EMGHEIDSINVSQDEK 312 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTE-E-EEEEEECCTT-CTTSCEEEEEEEET--TTCCEEEEE-EEEEEECEEEECCSSS
T ss_pred cceEeeeeeccceEEEEEeCCCCe-E-EEEeccCCce-eecCCCCeEEEEeC--CCCcEEEEe-cCCCCEEEEEEcCCCC
Confidence 000000001123345889999984 2 3322222211 11122345666663 333122222 2334467899999998
Q ss_pred EEEEEEeccccceEEEEEcCCCC
Q 007338 312 ALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
.+++..... ...|+++|+.++
T Consensus 313 ~~l~v~~~~--d~~i~v~D~~tg 333 (355)
T d2bbkh_ 313 PLLYALSTG--DKTLYIHDAESG 333 (355)
T ss_dssp CEEEEEETT--TTEEEEEETTTC
T ss_pred eEEEEEECC--CCEEEEEECCCC
Confidence 544333322 247889999884
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=98.58 E-value=4.3e-08 Score=95.74 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=73.5
Q ss_pred CCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEE
Q 007338 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 479 ~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~V 558 (607)
.++.+.|+|++.||.+|+|+|++|.+.+ + |+|+||++||. +... ..+...+.||++||+|
T Consensus 52 ~~~~~~v~~~s~dG~~l~~~l~~P~~~~--~--~~P~Vv~~hG~--------------~~~~--~~~~~~~~~a~~G~~v 111 (322)
T d1vlqa_ 52 TVEAYDVTFSGYRGQRIKGWLLVPKLEE--E--KLPCVVQYIGY--------------NGGR--GFPHDWLFWPSMGYIC 111 (322)
T ss_dssp SEEEEEEEEECGGGCEEEEEEEEECCSC--S--SEEEEEECCCT--------------TCCC--CCGGGGCHHHHTTCEE
T ss_pred CeEEEEEEEECCCCcEEEEEEEeccCCC--C--CccEEEEecCC--------------CCCc--CcHHHHHHHHhCCCEE
Confidence 3477889999999999999999998744 3 45999998853 1111 1123356899999999
Q ss_pred EeCCCCceec-cCCC-------------------------CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 559 LAGPSIPIIG-EGLW-------------------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 559 l~~~~~~~~g-~g~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+. ++.+..| ++.. ....+......|++++++++..+..+|.+++.
T Consensus 112 ~~-~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~ 182 (322)
T d1vlqa_ 112 FV-MDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIV 182 (322)
T ss_dssp EE-ECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EE-eeccccCCCCCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhcc
Confidence 98 4443222 1111 11123345678999999999999999998753
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.54 E-value=1.8e-06 Score=85.63 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=42.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.++..+|||||+.||+... ...|.++|+++++..++..... ....+..+.|+|++++|+..
T Consensus 9 pIt~~~~s~dg~~la~~~~----------~~~i~iw~~~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~ 69 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPN----------NHEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTC 69 (371)
T ss_dssp CCCEEEECTTSSEEEEECS----------SSEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeC----------CCEEEEEECCCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEE
Confidence 4889999999999987643 2468888998886544432111 11126789999998877764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.53 E-value=2.1e-05 Score=75.83 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=56.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..|.+.|++ +++...-..++.........|||||++|+.... ....|+++|+++++...........
T Consensus 18 ~~v~v~D~~----t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---------~~~~v~~~d~~t~~~~~~~~~~~~~ 84 (346)
T d1jmxb_ 18 NNLHVVDVA----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---------HYGDIYGIDLDTCKNTFHANLSSVP 84 (346)
T ss_dssp TEEEEEETT----TTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---------TTTEEEEEETTTTEEEEEEESCCST
T ss_pred CEEEEEECC----CCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---------CCCcEEEEeCccCeeeeeecccccc
Confidence 357788987 666544333555556789999999998765542 3468999999999765332221111
Q ss_pred --ccccccceEEecCCeEEEEE
Q 007338 85 --LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 --~~~~~~~~~Wspd~~~l~~~ 104 (607)
.......+.++||++.++..
T Consensus 85 ~~~~~~~~~v~~s~DG~~l~v~ 106 (346)
T d1jmxb_ 85 GEVGRSMYSFAISPDGKEVYAT 106 (346)
T ss_dssp TEEEECSSCEEECTTSSEEEEE
T ss_pred cccCCceEEEEEecCCCEEEEE
Confidence 11123478899998877664
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.48 E-value=2e-05 Score=74.69 Aligned_cols=239 Identities=14% Similarity=0.138 Sum_probs=116.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|||||++||.... + ..|.++|+++++..+...... ...+..+.|+|+++++....+..-..
T Consensus 14 ~V~~l~~s~dg~~l~s~s~--------D--g~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~~~~d~~v~~ 80 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADA--------E--GHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFTVSWDDHLKV 80 (299)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CcEEEEECCCCCEEEEEcC--------C--CeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeecccceeeEEE
Confidence 5889999999998875432 2 467888999988765532111 12256889999988766542110000
Q ss_pred CCCC-ccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCeeecCCCCceeeeeeCCCCceEE
Q 007338 112 PPKK-TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (607)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~~~~~~~~~SpDg~~i~ 190 (607)
.... ................ ... +....+...........+.+++. ++...+........++|+||++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~------~~~-~~~s~~g~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQ------PLG-LAVSADGDIAVAACYKHIAIYSH-GKLTEVPISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSC------EEE-EEECTTSSCEEEEESSEEEEEET-TEEEEEECSSCEEEEEECTTSCEEE
T ss_pred eccCCcccccccccccccccc------ccc-ccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 0000 0000000000000000 000 00011111111112234444442 2222222222345689999999888
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCcc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~ 270 (607)
....+ ..+.+||+++++...+..... ...+..+.|+|+++.. + . ....
T Consensus 153 ~g~~d-------------g~i~~~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l-~-~-~~~d----- 200 (299)
T d1nr0a2 153 VGGQD-------------SKVHVYKLSGASVSEVKTIVH-----------PAEITSVAFSNNGAFL-V-A-TDQS----- 200 (299)
T ss_dssp EEETT-------------SEEEEEEEETTEEEEEEEEEC-----------SSCEEEEEECTTSSEE-E-E-EETT-----
T ss_pred ccccc-------------ccccccccccccccccccccc-----------cccccccccccccccc-c-c-cccc-----
Confidence 76532 368899998876655432100 1123458899999732 1 1 1111
Q ss_pred ccCCCceEEeccCCCCCCC---CceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCC
Q 007338 271 EVSPRDIIYTQPAEPAEGE---KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~---~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
..+.+++. ..+. ....+......+..++|+|+|..|+.... ++ .+.+.|+...
T Consensus 201 -----~~i~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~--dg--~i~iwd~~~~ 256 (299)
T d1nr0a2 201 -----RKVIPYSV--ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL--DN--SVIVWNMNKP 256 (299)
T ss_dssp -----SCEEEEEG--GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET--TS--CEEEEETTCT
T ss_pred -----cccccccc--cccccccccccccccccccccccccccccceEEEcC--CC--EEEEEECCCC
Confidence 12334332 1110 11112222345677899999998876542 22 4666677764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.46 E-value=8.2e-06 Score=78.86 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=40.7
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.|++|++|++|+.... ...|.++|+++++.......+... ....+.|+||++.+|.+
T Consensus 1 g~a~~~~~~~l~~~~~----------~~~v~v~D~~t~~~~~t~~~~~~~---~p~~l~~spDG~~l~v~ 57 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNY----------PNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVL 57 (346)
T ss_dssp CCCCCTTCEEEEEEET----------TTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEE
T ss_pred CccCCCCCcEEEEEcC----------CCEEEEEECCCCCEEEEEEcCCCC---CcceEEECCCCCEEEEE
Confidence 3789999999887653 358999999999875432222211 14688999999887764
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=98.45 E-value=5.5e-08 Score=97.53 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=68.9
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..+.+.++.+||++|.+.||+|++ .+++ |+||..|| |..+ ........+ ..........++||++||+|+.
T Consensus 23 ~~~~v~i~~rDG~~L~~~v~~P~~---~~~~--P~il~~~p--Yg~~-~~~~~~~~~-~~~~~~~~~~~~~a~~Gy~vv~ 93 (381)
T d1mpxa2 23 IKREVMIPMRDGVKLHTVIVLPKG---AKNA--PIVLTRTP--YDAS-GRTERLASP-HMKDLLSAGDDVFVEGGYIRVF 93 (381)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT---CCSE--EEEEEEES--SCHH-HHTCSSCCS-SHHHHSCGGGHHHHHTTCEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEeCC---CCCc--cEEEEEcc--CCCC-Ccccccccc-cccccchhHHHHHHhCCCEEEE
Confidence 346689999999999999999976 2344 99998764 1100 000000001 0011112336899999999997
Q ss_pred CCCCc-eeccCCCC---------chhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIP-IIGEGLWS---------NWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~-~~g~g~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.+.+ ..+++++. ...+..+.+.|+.++|+||..+..+|.++|
T Consensus 94 -~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~v 145 (381)
T d1mpxa2 94 -QDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKV 145 (381)
T ss_dssp -EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred -EecCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccce
Confidence 3321 11132221 111223457899999999999987788776
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.39 E-value=1.1e-05 Score=81.75 Aligned_cols=59 Identities=10% Similarity=-0.098 Sum_probs=41.7
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...+....|...+.++..+ +...|.++|+++++.......... +..+.|||||++++..
T Consensus 21 ~~~~~~~~~~~~~~~v~~~--------d~g~v~v~D~~t~~v~~~~~~g~~-----~~~v~fSpDG~~l~~~ 79 (432)
T d1qksa2 21 PTQQMNDWDLENLFSVTLR--------DAGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVI 79 (432)
T ss_dssp CSSCCSCCCGGGEEEEEET--------TTTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEE
T ss_pred CCceeecCCCCcEEEEEEc--------CCCEEEEEECCCCcEEEEEeCCCC-----eeEEEECCCCCEEEEE
Confidence 4455566777777776653 457899999999987554433221 5688999999988874
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=98.38 E-value=2.2e-07 Score=90.03 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEE
Q 007338 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 479 ~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~V 558 (607)
.++.+.|+|++.||.+|+|+|++|++ + .|.|+||++|+. ++.... .....+.||++||+|
T Consensus 53 ~~~~~~v~~~~~dg~~i~~~l~~P~~--~---~~~P~vv~~HG~------------~~~~~~---~~~~~~~la~~Gy~v 112 (318)
T d1l7aa_ 53 GVKVYRLTYKSFGNARITGWYAVPDK--E---GPHPAIVKYHGY------------NASYDG---EIHEMVNWALHGYAT 112 (318)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEEEESS--C---SCEEEEEEECCT------------TCCSGG---GHHHHHHHHHTTCEE
T ss_pred CeEEEEEEEECCCCcEEEEEEEecCC--C---CCceEEEEecCC------------CCCccc---hHHHHHHHHHCCCEE
Confidence 34788999999999999999999986 1 245999998853 111111 112367899999999
Q ss_pred EeCCCCceec-cCCC------------------CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 559 LAGPSIPIIG-EGLW------------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 559 l~~~~~~~~g-~g~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+. ++.+-.| ++.. ........++.|...++++|..++.+|.+++.
T Consensus 113 i~-~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~ 176 (318)
T d1l7aa_ 113 FG-MLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIG 176 (318)
T ss_dssp EE-ECCTTTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EE-EeeCCCCCCCCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceE
Confidence 98 5543222 1111 01122345678899999999999999988763
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.35 E-value=0.00022 Score=61.58 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=79.5
Q ss_pred ceEEEEeCC--CCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 157 AQLVLGSLD--GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 157 ~~l~~~~~~--g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
-.||..++. |+..++..+..+.-++..-|++.|+|+.... ...++|-+++|+.++|+.+|...
T Consensus 82 Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gase------------d~~~LYviegGklrkL~~vPpFs--- 146 (313)
T d2hu7a1 82 HALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE------------DRVALYALDGGGLRELARLPGFG--- 146 (313)
T ss_dssp EEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECS------------SCEEEEEEETTEEEEEEEESSCE---
T ss_pred eeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccC------------CceEEEEEeCCceeeeccCCCcc---
Confidence 468888985 8999998776455566666899999997532 24566677899999998765322
Q ss_pred cccccccCCCCcceeecC--CCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE
Q 007338 235 VCYNSVREGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspd--g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~ 312 (607)
+-.| |+ .+.=+....++ +..+++.+. ..| ..+.++..++.+..+..+++.+.
T Consensus 147 --------------FVtDI~~d-~I~G~g~~~g~--------~~sfF~adl--~SG-~lri~tpkeGS~~~ay~~~gnKV 200 (313)
T d2hu7a1 147 --------------FVSDIRGD-LIAGLGFFGGG--------RVSLFTSNL--SSG-GLRVFDSGEGSFSSASISPGMKV 200 (313)
T ss_dssp --------------EEEEEETT-EEEEEEEEETT--------EEEEEEEET--TTE-EEEEECCSSEEEEEEEECTTSCE
T ss_pred --------------eEEeccCC-eEEEEeeecCC--------cceEEEEec--ccC-CEEEecCCCCcccceeEccCcee
Confidence 1111 11 11111111111 122444331 133 45556666677888888888775
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 007338 313 LVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
+.+ ....+...+..+|+.++
T Consensus 201 -~sd-yEt~gEsywit~D~~s~ 220 (313)
T d2hu7a1 201 -TAG-LETAREARLVTVDPRDG 220 (313)
T ss_dssp -EEE-EEESSCEEEEEECTTTC
T ss_pred -eec-cCCCCceEEEEEecccC
Confidence 332 22234455667888874
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=8.8e-05 Score=69.79 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=83.4
Q ss_pred eeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 007338 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (607)
Q Consensus 23 ~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~ 102 (607)
.|.+... .+...+|||||+.||-.+. + ..|.++|+.+++.......... .+..+.|+|++.+++
T Consensus 12 ~L~GH~~--~I~~l~~sp~~~~l~s~s~--------D--g~i~iWd~~~~~~~~~~~~h~~----~V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 12 ALSGHRS--PVTRVIFHPVFSVMVSASE--------D--ATIKVWDYETGDFERTLKGHTD----SVQDISFDHSGKLLA 75 (317)
T ss_dssp EEECCSS--CEEEEEECSSSSEEEEEES--------S--SCEEEEETTTCCCCEEECCCSS----CEEEEEECTTSSEEE
T ss_pred EEcCCCC--CeEEEEEcCCCCEEEEEeC--------C--CeEEEEECCCCCEEEEEeCCCC----cEEEEeeeccccccc
Confidence 4554433 5899999999998765442 2 4678889998876443322222 266889999988877
Q ss_pred EEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccce-eeeccceEEEEeC-CCC-eeecCC-CCcee
Q 007338 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF-DYYTTAQLVLGSL-DGT-AKDFGT-PAVYT 178 (607)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~ 178 (607)
........... ............ +.... ... .....+...+ .......+.++++ +++ ...+.. .....
T Consensus 76 ~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (317)
T d1vyhc1 76 SCSADMTIKLW---DFQGFECIRTMH-GHDHN---VSS-VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147 (317)
T ss_dssp EEETTSCCCEE---ETTSSCEEECCC-CCSSC---EEE-EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ccccccccccc---cccccccccccc-ccccc---cee-eeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence 65332211100 000000000000 00000 000 0000111111 1112345666777 554 333332 23456
Q ss_pred eeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
.+.|+||++.|+....+ ..+.++++.+++..
T Consensus 148 ~~~~~~~~~~l~~~~~d-------------~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 148 MVRPNQDGTLIASCSND-------------QTVRVWVVATKECK 178 (317)
T ss_dssp EEEECTTSSEEEEEETT-------------SCEEEEETTTCCEE
T ss_pred eeecccCCCEEEEEeCC-------------CeEEEEeeccceee
Confidence 78999999988776532 25777887765443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=0.00011 Score=70.15 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=70.8
Q ss_pred ceEEEEeC-CCCe-eecCC-CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCC
Q 007338 157 AQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (607)
Q Consensus 157 ~~l~~~~~-~g~~-~~lt~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (607)
..+.++++ +++. ..+.. ...+..++|+|||++|+..+.+ ..+.+|++............
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-------------~~i~~~~~~~~~~~~~~~~~----- 267 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-------------ATCRLFDLRADQELMTYSHD----- 267 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCT-----
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-------------CeEEEEeecccccccccccc-----
Confidence 45666777 5543 33433 2356789999999988876532 36888998866544332110
Q ss_pred CcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEE
Q 007338 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (607)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l 313 (607)
........+.|+|+++. +... .. ...+.+++. ..+.....+..+...+..++|+||+..|
T Consensus 268 -----~~~~~i~~~~~s~~~~~--l~~g-~~----------dg~i~iwd~--~~~~~~~~~~~H~~~V~~l~~s~d~~~l 327 (340)
T d1tbga_ 268 -----NIICGITSVSFSKSGRL--LLAG-YD----------DFNCNVWDA--LKADRAGVLAGHDNRVSCLGVTDDGMAV 327 (340)
T ss_dssp -----TCCSCEEEEEECSSSCE--EEEE-ET----------TSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred -----cccCceEEEEECCCCCE--EEEE-EC----------CCEEEEEEC--CCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 00122345899999973 1111 11 123555553 3332233344445567889999999877
Q ss_pred EEEE
Q 007338 314 VNET 317 (607)
Q Consensus 314 ~~~~ 317 (607)
+...
T Consensus 328 ~s~s 331 (340)
T d1tbga_ 328 ATGS 331 (340)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6643
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=98.28 E-value=2.6e-07 Score=92.62 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=69.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcC--CCCCCchhHHHhccCeEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF--SGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~--~~~~~~~~q~la~~GY~V 558 (607)
..+-|.++.+||++|.+.||+|.+ +++ .|+||..+| |.... .....+..+ ........++||++||+|
T Consensus 27 ~~~~v~ipmrDG~~L~~~v~~P~~---~~~--~P~il~~tp--Y~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~Gy~v 96 (385)
T d2b9va2 27 IKREVMVPMRDGVKLYTVIVIPKN---ARN--APILLTRTP--YNAKG---RANRVPNALTMREVLPQGDDVFVEGGYIR 96 (385)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT---CCS--EEEEEEEES--SCHHH---HTCSSTTCSSHHHHSCGGGHHHHHTTCEE
T ss_pred eEeEEEEECCCCCEEEEEEEEcCC---CCc--eeEEEEEcc--CCCCC---ccccCCcccccccccchHHHHHHhCCcEE
Confidence 455688999999999999999985 234 499998643 21100 000111111 111123468999999999
Q ss_pred EeCCCCc-eeccCCCC---------chhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 559 LAGPSIP-IIGEGLWS---------NWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 559 l~~~~~~-~~g~g~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+. .+.+ ..++++.. ...+..+.+.|+.++|+||..+..+++++|
T Consensus 97 v~-~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~v 150 (385)
T d2b9va2 97 VF-QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRV 150 (385)
T ss_dssp EE-EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEE
T ss_pred EE-EcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccce
Confidence 97 3321 11233321 122333457899999999999986677765
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=98.26 E-value=3.8e-07 Score=90.04 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=63.9
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+-|.++.+||.+|.+.||+|.+ ++ |+|+||..||- |. ......... ....+.||++||+|+. .
T Consensus 6 ~~v~ipmrDGv~L~~~vy~P~~---~~--~~P~il~~~py----g~------~~~~~~~~~-~~~~~~~a~~GY~vv~-~ 68 (347)
T d1ju3a2 6 SNVMVPMRDGVRLAVDLYRPDA---DG--PVPVLLVRNPY----DK------FDVFAWSTQ-STNWLEFVRDGYAVVI-Q 68 (347)
T ss_dssp EEEEEECTTSCEEEEEEEEECC---SS--CEEEEEEEESS----CT------TCCHHHHTT-SCCTHHHHHTTCEEEE-E
T ss_pred eCeEEECCCCCEEEEEEEEcCC---CC--CEEEEEEEcCC----CC------ccccCcCcc-cHHHHHHHHCCCEEEE-E
Confidence 4578899999999999999975 23 45999998751 00 000111111 1235899999999997 3
Q ss_pred CCcee-ccCCCCchhhHHHHhhcHHHHHHHHHHhcccccc
Q 007338 563 SIPII-GEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLED 601 (607)
Q Consensus 563 ~~~~~-g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 601 (607)
+.+-. ++++.. .+......|+.++|+||..+.+.|+.
T Consensus 69 d~RG~g~S~G~~--~~~~~~~~d~~d~i~w~~~q~~~~gr 106 (347)
T d1ju3a2 69 DTRGLFASEGEF--VPHVDDEADAEDTLSWILEQAWCDGN 106 (347)
T ss_dssp ECTTSTTCCSCC--CTTTTHHHHHHHHHHHHHHSTTEEEE
T ss_pred eeCCccccCCcc--ccccchhhhHHHHHHHHHhhccCCcc
Confidence 32111 133322 12223346788999999999998864
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.16 E-value=0.00091 Score=65.44 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=48.4
Q ss_pred eeEEEeccCCCCCCCeeee--ecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 6 GIGIHRLLPDDSLGPEKEV--HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l--t~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
+||..++.+ ++++...+ +..+.....+...+||||+.|+.. . .++...|.++.+++.....+.....
T Consensus 15 ~i~~~~fd~--~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-~--------~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-A--------MKKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-E--------BTEEEEEEEEETTEEEEEEEEECCS
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-e--------CCcEEEEEEeCCCCeEEEeeecCCC
Confidence 688888753 34443322 223444345778999999987554 3 3457778888776544333211111
Q ss_pred cccccccceEEecCCeEEEEE
Q 007338 84 CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....+..+++++.+|.+
T Consensus 84 ----~p~~v~~~~~~~~~~v~ 100 (365)
T d1jofa_ 84 ----HPRANDADTNTRAIFLL 100 (365)
T ss_dssp ----SGGGGCTTSCCEEEEEE
T ss_pred ----CcEEEEECCCCCEEEEE
Confidence 13456677888765544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.15 E-value=0.00094 Score=65.10 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=38.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee-cccCCCc-------------cccccccceEEecC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI-------------CLNAVFGSFVWVNN 97 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~-------------~~~~~~~~~~Wspd 97 (607)
.+...+|||||++||... + ..|.++|+.+++... +...... .....+..+.|+||
T Consensus 64 ~V~~l~fs~dg~~lasg~---------d--~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGC---------N--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp CCCEEEECTTSSEEEEEC---------B--SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEe---------C--CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence 589999999999887532 2 357888998876532 2111100 00112346789999
Q ss_pred CeEEEEE
Q 007338 98 STLLIFT 104 (607)
Q Consensus 98 ~~~l~~~ 104 (607)
+++++..
T Consensus 133 ~~~l~s~ 139 (388)
T d1erja_ 133 GKFLATG 139 (388)
T ss_dssp SSEEEEE
T ss_pred CCcceec
Confidence 8877764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.14 E-value=0.0012 Score=62.53 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=74.8
Q ss_pred eeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCcccccccccccc
Q 007338 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (607)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 141 (607)
.+|.++|+++++........... .....+.++|||+.++.+..
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~--~~~~~i~~spDg~~l~v~~~----------------------------------- 53 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVN----------------------------------- 53 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEET-----------------------------------
T ss_pred CEEEEEECCCCeEEEEEECCCCC--CCccEEEECCCCCEEEEEEC-----------------------------------
Confidence 68999999999865433222111 12458899999987766410
Q ss_pred ccCcccccceeeeccceEEEEeC-CCCee-ecC--CCC----ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEE
Q 007338 142 LKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG--TPA----VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (607)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt--~~~----~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (607)
....|+++|+ +|+.. .+. ... ....+++||||++++............ .......+.+
T Consensus 54 -------------~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~-~~~~~~~~~~ 119 (337)
T d1pbyb_ 54 -------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH-FEVQPTRVAL 119 (337)
T ss_dssp -------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC-EEECCCEEEE
T ss_pred -------------CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee-ccccccceee
Confidence 0134555666 45432 221 111 223789999999998886532110000 0001346788
Q ss_pred EeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
+|..+++....... ...+..+.|+|||+.
T Consensus 120 ~d~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~ 148 (337)
T d1pbyb_ 120 YDAETLSRRKAFEA-------------PRQITMLAWARDGSK 148 (337)
T ss_dssp EETTTTEEEEEEEC-------------CSSCCCEEECTTSSC
T ss_pred ccccCCeEEEeccc-------------cCCceEEEEcCCCCE
Confidence 99988766553321 123456899999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.00024 Score=69.72 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=51.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.|.|.++. +++.+.+..+.+ ...+....|||||++|+-... + ..|.++|+.+++.++......
T Consensus 30 ~i~iw~~~----~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~--------D--~~i~vWd~~~~~~~~~~~~~~-- 93 (371)
T d1k8kc_ 30 EVHIYEKS----GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------D--RNAYVWTLKGRTWKPTLVILR-- 93 (371)
T ss_dssp EEEEEEEE----TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------T--SCEEEEEEETTEEEEEEECCC--
T ss_pred EEEEEECC----CCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC--------C--CeEEEEeeccccccccccccc--
Confidence 46677775 565444443322 225899999999999876542 2 467777887766443321111
Q ss_pred ccccccceEEecCCeEEEEE
Q 007338 85 LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+..+..+.|+|+++.++..
T Consensus 94 ~~~~v~~i~~~p~~~~l~~~ 113 (371)
T d1k8kc_ 94 INRAARCVRWAPNEKKFAVG 113 (371)
T ss_dssp CSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccceee
Confidence 11226688999998877764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.88 E-value=0.0017 Score=60.62 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=34.7
Q ss_pred cccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEe--e--eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--F--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 299 ~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l--~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.....++|+||+..++.... . ..+.++|+.+. ....+ . ...+.. +.|+|+++.++...
T Consensus 137 ~~~~~~~~s~~~~~l~~g~~--d--g~i~~~d~~~~--~~~~~~~~~~~~~i~~---------~~~~~~~~~l~~~~ 198 (299)
T d1nr0a2 137 YNSSCVALSNDKQFVAVGGQ--D--SKVHVYKLSGA--SVSEVKTIVHPAEITS---------VAFSNNGAFLVATD 198 (299)
T ss_dssp SCEEEEEECTTSCEEEEEET--T--SEEEEEEEETT--EEEEEEEEECSSCEEE---------EEECTTSSEEEEEE
T ss_pred cccccccccccccccccccc--c--ccccccccccc--cccccccccccccccc---------cccccccccccccc
Confidence 34567899999987765432 2 35666777663 22222 1 112232 78899998876554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.0042 Score=58.65 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=36.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......|||||++|+.... ....+.+++.+.............. .....+.++||++.++..
T Consensus 84 ~p~~l~~spDg~~l~v~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~v~~s~d~~~~~~~ 145 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSY---------NAGNVSVTRLEDGLPVGVVDVVEGL--DGCHSANISPDNRTLWVP 145 (333)
T ss_dssp CCSEEEECTTSSEEEEEET---------TTTEEEEEEEETTEEEEEEEEECCC--TTBCCCEECTTSSEEEEE
T ss_pred CceEEEEcCCCCEEeeccc---------CCCceeeeccccccceecccccCCC--ccceEEEeeecceeeecc
Confidence 4667899999999876542 2345666666555443332111100 114567899998876664
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=97.86 E-value=9e-06 Score=80.17 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=67.8
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+..+.+++++.||.+|..++|+|++-+ .++|+|||+|+|- .+.++.... ......+.|+++||+|+
T Consensus 77 v~~~~~~i~~~dg~~i~~~iy~P~~~~----~~~Pviv~~HGGG--------~~~gs~~~~--~~~~~~~~la~~g~~Vv 142 (358)
T d1jkma_ 77 VETSTETILGVDGNEITLHVFRPAGVE----GVLPGLVYTHGGG--------MTILTTDNR--VHRRWCTDLAAAGSVVV 142 (358)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTCC----SCEEEEEEECCST--------TTSSCSSSH--HHHHHHHHHHHTTCEEE
T ss_pred ccEEEEEEeCCCCCEEEEEEEecCCCC----CCCCeEEEecCCe--------eeecccccc--ccchHHHHHHhhhheee
Confidence 467888999999999999999998733 2569999999652 122222110 00123578999999999
Q ss_pred eCCCCceecc-CCCCchhhHHHHhhcHHHHHHHHHHhc-ccccccc
Q 007338 560 AGPSIPIIGE-GLWSNWFQVQRLLLKKLFDVEWLIQAE-LLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g~-g~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 603 (607)
. ++. +.. +..+...| ...++||.++++||.+.. -+|.+++
T Consensus 143 s-vdY--Rla~~~~pe~~~-p~~l~D~~~a~~wl~~~~~~~~~~ri 184 (358)
T d1jkma_ 143 M-VDF--RNAWTAEGHHPF-PSGVEDCLAAVLWVDEHRESLGLSGV 184 (358)
T ss_dssp E-EEC--CCSEETTEECCT-THHHHHHHHHHHHHHHTHHHHTEEEE
T ss_pred e-eee--cccccccccCCC-chhhHHHHHHHHHHHHhccccCCccc
Confidence 7 321 111 11121122 456899999999998753 2355544
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=97.85 E-value=1.5e-05 Score=76.50 Aligned_cols=97 Identities=10% Similarity=-0.091 Sum_probs=62.3
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.+-..++..||..|++|+++|.+-.+ + +.|+||+.||. ++...+ +....++|+++||.|+.
T Consensus 4 ~~~h~~~~~dg~~l~~w~~~p~~~~~-~--~~~~Vvi~HG~------------~~~~~~---~~~~a~~L~~~G~~Vi~- 64 (302)
T d1thta_ 4 TIAHVLRVNNGQELHVWETPPKENVP-F--KNNTILIASGF------------ARRMDH---FAGLAEYLSTNGFHVFR- 64 (302)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSC-C--CSCEEEEECTT------------CGGGGG---GHHHHHHHHTTTCCEEE-
T ss_pred eeeeEEEcCCCCEEEEEEecCcCCCC-C--CCCEEEEeCCC------------cchHHH---HHHHHHHHHHCCCEEEE-
Confidence 34456788999999999999987444 3 34889988752 111111 11236899999999998
Q ss_pred CCCcee-cc-CCCCchhhHHHHhhcHHHHHHHHHHhcc
Q 007338 562 PSIPII-GE-GLWSNWFQVQRLLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 562 ~~~~~~-g~-g~~~~~~~~~~~~~~~~~~v~~~~~~~~ 597 (607)
++.+.+ |. -+...+.......+|+.+.++||-..+.
T Consensus 65 ~D~rGh~G~S~g~~~~~~~~~~~~dl~~vi~~l~~~~~ 102 (302)
T d1thta_ 65 YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGT 102 (302)
T ss_dssp ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCCCCcccCCCHHHHHHHHHHHHHhhhccCC
Confidence 555332 31 1113333345678899999999987763
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.84 E-value=0.0012 Score=64.18 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=40.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||||++|+.... ...|.+++...++.......... .+..+.|++++..++..
T Consensus 123 ~V~~l~~s~~~~~l~s~~~----------dg~v~i~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~ 181 (388)
T d1erja_ 123 YIRSVCFSPDGKFLATGAE----------DRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGDKLVSG 181 (388)
T ss_dssp BEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEE
T ss_pred CEEEEEECCCCCcceeccc----------ccccccccccccccccccccccc----ccccccccccccccccc
Confidence 3678899999999876543 24688889988876544322221 25678888887766653
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=97.83 E-value=1.2e-05 Score=77.74 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred CceEEEEEECCCCc-eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeE
Q 007338 480 LQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (607)
Q Consensus 480 ~~~e~i~~~s~DG~-~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~ 557 (607)
++.+.+++.+.||. +|.++||+|.+-+ .|+|+|||+|||-| +.|+...+ ....+.|| +.||+
T Consensus 48 v~~~~~~~~~~~g~~~i~~~~~~P~~~~----~~~Pvvv~iHGGG~--------~~g~~~~~----~~~~~~la~~~G~~ 111 (317)
T d1lzla_ 48 VSLRELSAPGLDGDPEVKIRFVTPDNTA----GPVPVLLWIHGGGF--------AIGTAESS----DPFCVEVARELGFA 111 (317)
T ss_dssp EEEEEEEECCSTTCCCEEEEEEEESSCC----SCEEEEEEECCSTT--------TSCCGGGG----HHHHHHHHHHHCCE
T ss_pred ceEEEEEEecCCCCceEEEEEECCCCCC----CCCcEEEEecCccc--------cccccccc----chHHHhHHhhcCCc
Confidence 46788999999996 6999999998632 36799999996521 22222211 11234444 56999
Q ss_pred EEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh---cccccccc
Q 007338 558 VLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA---ELLLEDTL 603 (607)
Q Consensus 558 Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~ 603 (607)
|+. ++ |...+...+ ...++|+.++++|+.+. --+|.+++
T Consensus 112 V~~-vd-----Yrl~pe~~~-~~~~~d~~~~~~~~~~~~~~~g~D~~rI 153 (317)
T d1lzla_ 112 VAN-VE-----YRLAPETTF-PGPVNDCYAALLYIHAHAEELGIDPSRI 153 (317)
T ss_dssp EEE-EC-----CCCTTTSCT-THHHHHHHHHHHHHHHTHHHHTEEEEEE
T ss_pred ccc-cc-----ccccccccc-cccccccccchhHHHHHHHHhCCCHHHE
Confidence 998 33 211121122 45577888888888653 23577775
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.76 E-value=0.011 Score=56.24 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=40.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....|.|.+||+ |+|+-. ....|+.+++++++........... ...+.+++|+++++..
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~---------~~g~I~ri~p~g~~~~~~~~~~~~~----p~gla~~~dG~l~va~ 99 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDV---------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCY 99 (319)
T ss_dssp CEEEEEECTTSC-EEEEET---------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEE
T ss_pred CcEeCEECCCCC-EEEEEC---------CCCEEEEEECCCCeEEEEEeCCCCC----eeEEEECCCCCEEEEe
Confidence 457899999997 666532 3468999999988755443211111 4578899999987753
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.75 E-value=2.9e-05 Score=76.47 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=64.7
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
...|.|++. .||.+|+|+|+.|.+- + |.|+||++|+- ++... ......+.|+++||+|+
T Consensus 104 ~~~e~v~ip-~dg~~l~g~l~~P~~~---~--~~P~Vi~~hG~------------~~~~e---~~~~~~~~l~~~G~~vl 162 (360)
T d2jbwa1 104 PPAERHELV-VDGIPMPVYVRIPEGP---G--PHPAVIMLGGL------------ESTKE---ESFQMENLVLDRGMATA 162 (360)
T ss_dssp SCEEEEEEE-ETTEEEEEEEECCSSS---C--CEEEEEEECCS------------SCCTT---TTHHHHHHHHHTTCEEE
T ss_pred CCeEEeecC-cCCcccceEEEecCCC---C--CceEEEEeCCC------------CccHH---HHHHHHHHHHhcCCEEE
Confidence 367888887 4899999999999761 2 45999998742 11111 11223578999999999
Q ss_pred eCCCCceecc-CCC--CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 560 AGPSIPIIGE-GLW--SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g~-g~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. .+.|..|. ... ....+ ..++...++||..+..+|.+++
T Consensus 163 ~-~D~~G~G~s~~~~~~~~~~----~~~~~~v~d~l~~~~~vd~~rI 204 (360)
T d2jbwa1 163 T-FDGPGQGEMFEYKRIAGDY----EKYTSAVVDLLTKLEAIRNDAI 204 (360)
T ss_dssp E-ECCTTSGGGTTTCCSCSCH----HHHHHHHHHHHHHCTTEEEEEE
T ss_pred E-EccccccccCccccccccH----HHHHHHHHHHHHhcccccccce
Confidence 8 66554442 111 11122 2345677889999999998874
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.73 E-value=0.0071 Score=57.38 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=39.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....|+|.|||+ |+|+....... ......|+.+|+++++...+..............+.+.+++.+++..
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~--~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va 88 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVN--GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEET--TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCeEeEEeCCCC-EEEEECccccc--cccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE
Confidence 467899999997 55554321000 01235799999999876554321110000112357788887665553
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=97.71 E-value=8.9e-06 Score=74.92 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=61.9
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.|.|+|++.||.+|+++|++|.+ +++ |+||++|.. .|.+.+ .....+.||++||+|+.
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~----~~~--P~vl~~h~~------------~G~~~~---~~~~a~~lA~~Gy~vl~- 60 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK----APA--PVIVIAQEI------------FGVNAF---MRETVSWLVDQGYAAVC- 60 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS----SSE--EEEEEECCT------------TBSCHH---HHHHHHHHHHTTCEEEE-
T ss_pred ceEEEEEcCCCCEEEEEEECCCC----CCc--eEEEEeCCC------------CCCCHH---HHHHHHHHHhcCCccee-
Confidence 46789999999999999999964 334 999998732 111111 11125789999999998
Q ss_pred CCCcee-ccCCC-CchhhH--------------HHHhhcHHHHHHHHHHhcccccccc
Q 007338 562 PSIPII-GEGLW-SNWFQV--------------QRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 562 ~~~~~~-g~g~~-~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
|+.... +.+.. ....+. .....|+.+++++|..+++ +.+++
T Consensus 61 pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i 117 (233)
T d1dina_ 61 PDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKV 117 (233)
T ss_dssp ECGGGGTSTTCBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEE
T ss_pred eeeccCCCcCcccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCce
Confidence 553211 11111 111111 1335678899999988886 44443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.69 E-value=0.0054 Score=57.81 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=48.8
Q ss_pred CCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC
Q 007338 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (607)
Q Consensus 19 g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~ 98 (607)
...+.++.++......+++++|||+ |+++ . .....||.++..+ +.+.+...... ...+.|++|+
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt-~--------~~~~~I~~i~p~g-~~~~~~~~~~~-----~~gla~~~dG 79 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVT-N--------HEVGEIVSITPDG-NQQIHATVEGK-----VSGLAFTSNG 79 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEE-E--------TTTTEEEEECTTC-CEEEEEECSSE-----EEEEEECTTS
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEE-e--------CCCCEEEEEeCCC-CEEEEEcCCCC-----cceEEEcCCC
Confidence 3466778788776788999999997 4444 3 2346899999874 44555433332 5678999999
Q ss_pred eEEEEE
Q 007338 99 TLLIFT 104 (607)
Q Consensus 99 ~~l~~~ 104 (607)
++++..
T Consensus 80 ~l~v~~ 85 (302)
T d2p4oa1 80 DLVATG 85 (302)
T ss_dssp CEEEEE
T ss_pred CeEEEe
Confidence 977764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.61 E-value=0.016 Score=54.19 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=40.0
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
..|.|.+..+.|+|+-- ....|+.+|+++++.+.. ..+.. .+.+.+.+++++++.
T Consensus 21 Egp~wd~~~~~l~wvDi---------~~~~I~r~d~~~g~~~~~-~~~~~-----~~~i~~~~dg~l~va 75 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI---------LERELHELHLASGRKTVH-ALPFM-----GSALAKISDSKQLIA 75 (295)
T ss_dssp EEEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEEEE-ECSSC-----EEEEEEEETTEEEEE
T ss_pred eCCeEECCCCEEEEEEC---------CCCEEEEEECCCCeEEEE-ECCCC-----cEEEEEecCCCEEEE
Confidence 57999998889988642 347899999999987644 22321 456777788887765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=0.0089 Score=56.70 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=35.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce---eecccCCCccccccccceEEecC--CeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~---~~lt~~~~~~~~~~~~~~~Wspd--~~~l~~~ 104 (607)
......|+|+|+.|||... ....|+.++....+. ..++.+.. ..+..+.|+|+ +++++..
T Consensus 19 ~~t~l~~~~~~~~la~~~~---------~~~~i~~~~~~~~~~~~~~~~~gh~~----~~v~~v~fsP~~~g~~lasg 83 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCG---------KSAFVRCLDDGDSKVPPVVQFTGHGS----SVVTTVKFSPIKGSQYLCSG 83 (325)
T ss_dssp CCCCCEEETTTTEEEEEET---------TEEEEEECCSSCCSSCSEEEECTTTT----SCEEEEEECSSTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEEeC---------CCEEEEEEeCCCCCccceEEEeCCCC----CCEEEEEEeeCCCCCEEEEE
Confidence 4567899999999999752 233455555544332 23322211 12568899974 5666653
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=97.49 E-value=7e-05 Score=71.77 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=62.7
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeE-EE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA-VL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~-Vl 559 (607)
..+.++++. ||.+|.+.||+|++.++ |+|+|||+|+|-| +.+....+ ....+.+|.+|++ |+
T Consensus 45 ~~~~~~~~~-~g~~i~~~~y~P~~~~~----~~Pvvv~iHGGg~--------~~g~~~~~----~~~~~~~a~~~~~~v~ 107 (308)
T d1u4na_ 45 EVREFDMDL-PGRTLKVRMYRPEGVEP----PYPALVYYHGGGW--------VVGDLETH----DPVCRVLAKDGRAVVF 107 (308)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTCCS----SEEEEEEECCSTT--------TSCCTTTT----HHHHHHHHHHHTSEEE
T ss_pred cEEEEEEec-CCceEEEEEEeccccCC----CCCEEEEEecCee--------eeeccccc----cchhhhhhhccccccc
Confidence 567777765 89999999999987552 4599999997522 11222111 1224677888765 55
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
. ++ |...+.. .....+.|+.++++||.+.. .+|.++|
T Consensus 108 ~-v~-----Yrl~p~~-~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri 147 (308)
T d1u4na_ 108 S-VD-----YRLAPEH-KFPAAVEDAYDALQWIAERAADFHLDPARI 147 (308)
T ss_dssp E-EC-----CCCTTTS-CTTHHHHHHHHHHHHHHTTTGGGTEEEEEE
T ss_pred c-cc-----ccccccc-ccccccchhhhhhhHHHHhHHhcCCCcceE
Confidence 4 22 2222211 22456789999999998754 5677775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=0.037 Score=52.11 Aligned_cols=119 Identities=8% Similarity=-0.052 Sum_probs=60.1
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
.+..+.|+|++.+++++...+ ..+.+|+....+...-..... .....+..++|+||+..
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~d------------~~v~~~d~~~~~~~~~~~~~~---------~~~~~v~~v~~~pd~~~ 219 (325)
T d1pgua1 161 RINACHLKQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHH---------KQGSFVRDVEFSPDSGE 219 (325)
T ss_dssp CEEEEEECSSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSS---------CTTCCEEEEEECSTTCC
T ss_pred ccccccccccccceEEEeecc------------cccccccccccccceeccccc---------CCCCccEEeeeccccce
Confidence 456789999998877665321 257788887665443211000 00111235889998654
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEc---CCCcEEEEEEeccccceEEEEEcCC
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC---DDSLALVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws---~Dg~~l~~~~~~~~~~~~l~~~dl~ 332 (607)
.++ ..... ..+.+++. ..+.....+...........|+ +||..|+.... ++ .|.+.|+.
T Consensus 220 ~l~--s~~~d----------~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~--D~--~i~iwd~~ 281 (325)
T d1pgua1 220 FVI--TVGSD----------RKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA--DA--TIRVWDVT 281 (325)
T ss_dssp EEE--EEETT----------CCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET--TS--EEEEEETT
T ss_pred ecc--ccccc----------cceeeeee--ccccccccccccccccccceeeeeccCCCEEEEEeC--CC--eEEEEECC
Confidence 322 11111 23445553 2331222332223334444555 67887776542 22 45556877
Q ss_pred C
Q 007338 333 S 333 (607)
Q Consensus 333 ~ 333 (607)
+
T Consensus 282 ~ 282 (325)
T d1pgua1 282 T 282 (325)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.40 E-value=0.0003 Score=70.11 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=37.6
Q ss_pred chhHHHhccCeEEEeCCCC-ceeccCCCCchhhHHHHhhcHHHHHHHHHHhccccccc
Q 007338 546 TSSLIFLARRFAVLAGPSI-PIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDT 602 (607)
Q Consensus 546 ~~~q~la~~GY~Vl~~~~~-~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 602 (607)
...++||.+||+|+. .+. ++.++++.. ..+..+...|+.++|+||..+..++.++
T Consensus 127 ~~~~~~~~~GYavv~-~D~RG~g~S~G~~-~~~~~~e~~D~~~~IeWl~~~~~~~~~~ 182 (405)
T d1lnsa3 127 SLNDYFLTRGFASIY-VAGVGTRSSDGFQ-TSGDYQQIYSMTAVIDWLNGRARAYTSR 182 (405)
T ss_dssp HHHHHHHTTTCEEEE-ECCTTSTTSCSCC-CTTSHHHHHHHHHHHHHHTTSSCEESST
T ss_pred cchHHHHhCCCEEEE-ECCCCCCCCCCcc-ccCChhhhhhHHHHHHHHHhcccccccc
Confidence 346899999999998 333 222233322 2455677889999999998876666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.38 E-value=0.021 Score=53.87 Aligned_cols=217 Identities=9% Similarity=0.090 Sum_probs=110.1
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~ 112 (607)
.....++|||+.|+.. . ....|.+++++++....+....++..-.....+...++|+++|.-.......
T Consensus 73 P~Gl~~~~dg~~l~va-d---------~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~- 141 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVA-D---------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAP- 141 (314)
T ss_dssp EEEEEECSSSSEEEEE-E---------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTT-
T ss_pred ceeEEEeCCCCEEEEE-E---------CCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccc-
Confidence 3457899999876543 2 2356899999877655443322211000124567788898877632110000
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCeeecCCC-CceeeeeeCCCCc----
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQK---- 187 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~-~~~~~~~~SpDg~---- 187 (607)
.. ... . . ......||+++.+|+...+... ..-..+.|+||++
T Consensus 142 -----------------~~------~~~--~--~------~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~ 188 (314)
T d1pjxa_ 142 -----------------AD------YTR--S--M------QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp -----------------SC------CCB--T--T------SSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEE
T ss_pred -----------------cc------ccc--e--e------ccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCccee
Confidence 00 000 0 0 0124678888887766554322 1224678888764
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCC-CCeeE---EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEee
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (607)
+|+++... ..+|+.+++. .+... .+...+... ..++..+...++|. | |+...
T Consensus 189 ~lyv~d~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~---------~~~pdGiavD~~Gn--l-yVa~~ 244 (314)
T d1pjxa_ 189 QLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTH---------EGGADGMDFDEDNN--L-LVANW 244 (314)
T ss_dssp EEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCS---------SCEEEEEEEBTTCC--E-EEEEE
T ss_pred EEEEEeec------------ccceEEeeccCccccceeeEEEEccccc---------cccceeeEEecCCc--E-EEEEc
Confidence 45544321 2378888765 33322 122211100 01123456666665 3 44332
Q ss_pred cCCCCccccCCCceEEeccCCCCCCCCcee-eeecCcccceeeEcCCCcE-EEEEEeccccceEEEEEcCCCC
Q 007338 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~ws~Dg~~-l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
.. ..+++++ |..| .... +........+++|.||++. ++... ...+||.+++...
T Consensus 245 ~~----------g~I~~~d--p~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~----~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 245 GS----------SHIEVFG--PDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEH----ENNAVWKFEWQRN 300 (314)
T ss_dssp TT----------TEEEEEC--TTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEET----TTTEEEEEECSSC
T ss_pred CC----------CEEEEEe--CCCC-EEEEEEECCCCCEEEEEEeCCCCEEEEEEC----CCCcEEEEECCCC
Confidence 22 3455554 2333 3222 2222235678999999874 44432 2358999987664
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.36 E-value=0.00015 Score=65.56 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=63.2
Q ss_pred EEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 485 i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
|.+...+| +|+|++..|.+ . +.|++|+.||.+... |..+ +.....-...|+++||.|+. .++
T Consensus 3 v~i~g~~G-~Le~~~~~~~~----~--~~~~~l~~Hp~p~~G--------G~~~--~~~~~~~a~~l~~~G~~~lr-fn~ 64 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE----K--SAPIAIILHPHPQFG--------GTMN--NQIVYQLFYLFQKRGFTTLR-FNF 64 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS----T--TCCEEEEECCCGGGT--------CCTT--SHHHHHHHHHHHHTTCEEEE-ECC
T ss_pred EEEeCCCc-cEEEEEeCCCC----C--CCCEEEEECCCcCcC--------CcCC--cHHHHHHHHHHHhcCeeEEE-Eec
Confidence 56888999 89999875542 1 238999888753221 1111 00001124578999999998 555
Q ss_pred ceeccCCC-CchhhHHHHhhcHHHHHHHHHHhccccccc
Q 007338 565 PIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAELLLEDT 602 (607)
Q Consensus 565 ~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 602 (607)
+|.|.. +...++....+|++++++|+..+...+...
T Consensus 65 --RG~g~S~G~~~~~~~e~~d~~aa~~~~~~~~~~~~~~ 101 (218)
T d2i3da1 65 --RSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSC 101 (218)
T ss_dssp --TTSTTCCSCCCSSHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred --CccCCCccccccchhHHHHHHHHHhhhhcccccccce
Confidence 444433 334456778899999999999998755443
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=97.35 E-value=9.6e-05 Score=69.21 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=34.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccC
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~ 522 (607)
+.|.+++++.+| +...+||+|++|+++|+| |+|++.|++
T Consensus 26 ~v~~~~~~~~~~-~r~~~vylP~~y~~~k~y--Pvl~~lhG~ 64 (273)
T d1wb4a1 26 RIVKETYTGING-TKSLNVYLPYGYDPNKKY--NIFYLMHGG 64 (273)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTSCC--EEEEEECCT
T ss_pred eEEEEEEecCCC-eEEEEEEeCCCCCCCCCc--eEEEEEeCC
Confidence 678999999998 569999999999998876 999998864
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=97.33 E-value=0.0002 Score=64.44 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=62.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
+.+.+++...+| +|++.+.+|..-.+. +.+++|..||.+. +||.. .+.......+.|+++||.|+.
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~~~---~~~~~vl~Hph~~---------~GG~~-~~~~~~~la~~l~~~G~~vlr 72 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDVAV---QPVTAIVCHPLST---------EGGSM-HNKVVTMAARALRELGITVVR 72 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTSCC---CSEEEEEECSCTT---------TTCST-TCHHHHHHHHHHHTTTCEEEE
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCCCC---CCcEEEEECCCCC---------CCcCC-CChHHHHHHHHHHHcCCeEEE
Confidence 567788999999 799999999763332 3366666665321 12210 000001124789999999998
Q ss_pred CCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHHhc
Q 007338 561 GPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 561 ~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
+++ +|.|.. +........++|+.++++|+.++.
T Consensus 73 -fd~--RG~G~S~g~~~~~~~~~~D~~a~~~~~~~~~ 106 (218)
T d2fuka1 73 -FNF--RSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR 106 (218)
T ss_dssp -ECC--TTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC
T ss_pred -eec--CCCccCCCccCcCcchHHHHHHHHHHHhhcc
Confidence 655 444443 111223566889999999998874
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=97.28 E-value=0.00022 Score=66.34 Aligned_cols=98 Identities=10% Similarity=-0.060 Sum_probs=60.3
Q ss_pred ceEEEEEECCCC-ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG-~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
....+++....+ ....|.||+|.+... + |+|+||+.|+. ++.... +....+.||++||+|+
T Consensus 22 ~~~~~~~~~~~~~g~~~~~ly~P~~~~~-g--~~P~Vv~~HG~------------~g~~~~---~~~~a~~lA~~Gy~V~ 83 (260)
T d1jfra_ 22 ATSQTSVSSLVASGFGGGTIYYPTSTAD-G--TFGAVVISPGF------------TAYQSS---IAWLGPRLASQGFVVF 83 (260)
T ss_dssp CEEEEEECTTTCSSSCCEEEEEESCCTT-C--CEEEEEEECCT------------TCCGGG---TTTHHHHHHTTTCEEE
T ss_pred ceeEEEeccCCcCcccCEEEEEcCCCCC-C--CccEEEEECCC------------CCCHHH---HHHHHHHHHhCCCEEE
Confidence 444455543332 134688999987332 3 45999998853 121111 1234689999999999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh----ccccccccc
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA----ELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~ 604 (607)
. ++. .|.+. .......|+.+++++|++. +.+|.+++.
T Consensus 84 ~-~d~--~~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~vD~~rI~ 124 (260)
T d1jfra_ 84 T-IDT--NTTLD-----QPDSRGRQLLSALDYLTQRSSVRTRVDATRLG 124 (260)
T ss_dssp E-ECC--SSTTC-----CHHHHHHHHHHHHHHHHHTSTTGGGEEEEEEE
T ss_pred E-Eee--CCCcC-----CchhhHHHHHHHHHHHHhhhhhhccccccceE
Confidence 8 432 22222 2233456788889999884 788888763
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.21 E-value=0.03 Score=51.28 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=40.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......|+|+++.|+.... ...+.++|+.+++.......... ....+.|++++++++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~----------d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASR----------DKTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQDGTLIASC 161 (317)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEE
T ss_pred cceeeeccCCCceEEeecc----------CcceeEeecccceeeeEEccCCC----cceeeecccCCCEEEEE
Confidence 4677899999999876543 35677889998876443322221 24578899998877764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.18 E-value=0.0047 Score=58.21 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=64.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|||+.|+.... ...|.++++...+......... ....+..+.|+|++++++....
T Consensus 228 ~i~~v~~~p~~~~l~s~s~----------d~~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~g~~----- 290 (340)
T d1tbga_ 228 DINAICFFPNGNAFATGSD----------DATCRLFDLRADQELMTYSHDN--IICGITSVSFSKSGRLLLAGYD----- 290 (340)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCTT--CCSCEEEEEECSSSCEEEEEET-----
T ss_pred CeEEEEECCCCCEEEEEeC----------CCeEEEEeeccccccccccccc--ccCceEEEEECCCCCEEEEEEC-----
Confidence 5788999999998876543 2567888998776543322111 1112557899999988776421
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~~ 188 (607)
...|.++|+ +++ ...+.. ...+..++|||||++
T Consensus 291 --------------------------------------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~ 326 (340)
T d1tbga_ 291 --------------------------------------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp --------------------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred --------------------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 123444555 443 233432 335678999999999
Q ss_pred EEEEEc
Q 007338 189 VLITSM 194 (607)
Q Consensus 189 i~~~~~ 194 (607)
|+..+.
T Consensus 327 l~s~s~ 332 (340)
T d1tbga_ 327 VATGSW 332 (340)
T ss_dssp EEEEET
T ss_pred EEEEcc
Confidence 886653
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=97.16 E-value=0.00032 Score=64.88 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=35.0
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccC
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~ 522 (607)
+.+.++|.|. +|.+++.+||+|++|+++|+| |+||+.|+.
T Consensus 21 ~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~~~--Pvvv~lHG~ 61 (255)
T d1jjfa_ 21 QVVNISYFSTATNSTRPARVYLPPGYSKDKKY--SVLYLLHGI 61 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCB--CEEEEECCT
T ss_pred EEEEEEEEecCCCCEEEEEEEeCCCCCCCCCC--cEEEEEecC
Confidence 6788889876 799999999999999998877 999998864
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.11 E-value=0.087 Score=49.51 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=71.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.....+++|||+.++-. ..+ ......|+.++..+++...+....... .....+.+.++|++++.....
T Consensus 83 ~p~gla~~~dG~l~va~-~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~nd~~~d~~G~l~vtd~~~---- 150 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFVCY-LGD-----FKSTGGIFAATENGDNLQDIIEDLSTA--YCIDDMVFDSKGGFYFTDFRG---- 150 (319)
T ss_dssp SEEEEEECTTSCEEEEE-CTT-----SSSCCEEEEECTTSCSCEEEECSSSSC--CCEEEEEECTTSCEEEEECCC----
T ss_pred CeeEEEECCCCCEEEEe-cCC-----CccceeEEEEcCCCceeeeeccCCCcc--cCCcceeEEeccceeeccccc----
Confidence 35567899999754322 211 123467888888887766554221110 113467788899876653110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCC-CceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~-~~~~~~~~SpDg~~i 189 (607)
. . . .....+++++.++ ..+.+... ..-..++||||++.|
T Consensus 151 -------------------~-------~--------~-----~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 151 -------------------Y-------S--------T-----NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp -------------------B-------T--------T-----BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred -------------------c-------c--------c-----cCcceeEEEecccceeEEEeeccceeeeeeeccccceE
Confidence 0 0 0 0134677787755 45554322 233578999999998
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
+++... ..+|++++++
T Consensus 192 yvad~~------------~~~I~~~d~~ 207 (319)
T d2dg1a1 192 WVTETT------------ANRLHRIALE 207 (319)
T ss_dssp EEEEGG------------GTEEEEEEEC
T ss_pred EEeccc------------CCceEEEEEc
Confidence 887532 2378888765
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.11 E-value=0.00032 Score=67.16 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=60.5
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..|.+++.+.|| +|..++|.|++ + .|+|||+|||- .+.|++..+. ....+++++.||+|+.
T Consensus 55 ~~~~~~i~~~~g-~i~~~iy~P~~-----~--~P~il~iHGGg--------~~~g~~~~~~---~~~~~l~~~~g~~Vv~ 115 (311)
T d1jjia_ 55 RVEDRTIKGRNG-DIRVRVYQQKP-----D--SPVLVYYHGGG--------FVICSIESHD---ALCRRIARLSNSTVVS 115 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSS-----S--EEEEEEECCST--------TTSCCTGGGH---HHHHHHHHHHTSEEEE
T ss_pred eEEEEEEeCCCC-cEEEEEEcCCC-----C--ceEEEEEcCCC--------CccCChhhhh---hhhhhhhhcCCcEEEE
Confidence 567788888888 89999999953 2 29999999752 2223332211 1112455667999998
Q ss_pred CCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc---ccccccc
Q 007338 561 GPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE---LLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 603 (607)
++ |...+...+ ...+.|+.++++|+.+.. -+|.+++
T Consensus 116 -v~-----Yrlap~~~~-p~~~~d~~~a~~~~~~~~~~~~~d~~ri 154 (311)
T d1jjia_ 116 -VD-----YRLAPEHKF-PAAVYDCYDATKWVAENAEELRIDPSKI 154 (311)
T ss_dssp -EE-----CCCTTTSCT-THHHHHHHHHHHHHHHTHHHHTEEEEEE
T ss_pred -ec-----ccccccccc-chhhhhhhhhhhHHHHhHHHhCcChhHE
Confidence 22 222222223 345688888888887753 4566664
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=97.02 E-value=0.00084 Score=62.23 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=52.4
Q ss_pred EEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCC
Q 007338 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (607)
Q Consensus 484 ~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (607)
-+.|=..+...++ ||+|.+ + +.|+|||+|||.+.. +....+ ....+.|+++||+|+. ++
T Consensus 41 dv~Yg~~~~~~lD--iy~P~~----~--~~P~vv~iHGG~w~~--------g~~~~~----~~~a~~l~~~G~~Vv~-~~ 99 (261)
T d2pbla1 41 NLSYGEGDRHKFD--LFLPEG----T--PVGLFVFVHGGYWMA--------FDKSSW----SHLAVGALSKGWAVAM-PS 99 (261)
T ss_dssp EEESSSSTTCEEE--EECCSS----S--CSEEEEEECCSTTTS--------CCGGGC----GGGGHHHHHTTEEEEE-EC
T ss_pred CcCCCCCcCeEEE--EeccCC----C--CCCeEEEECCCCCcc--------CChhHh----hhHHHHHhcCCceeec-cc
Confidence 3445333334444 788864 2 449999999652221 221112 1235899999999998 33
Q ss_pred CceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 564 IPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 564 ~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
. ...+...+ ...++|+.++++||.+..
T Consensus 100 Y-----Rl~p~~~~-p~~~~d~~~a~~~~~~~~ 126 (261)
T d2pbla1 100 Y-----ELCPEVRI-SEITQQISQAVTAAAKEI 126 (261)
T ss_dssp C-----CCTTTSCH-HHHHHHHHHHHHHHHHHS
T ss_pred c-----cccccccC-chhHHHHHHHHHHHHhcc
Confidence 2 11222334 567899999999999864
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0001 Score=68.76 Aligned_cols=64 Identities=9% Similarity=-0.028 Sum_probs=47.6
Q ss_pred ceEEEEEECCCCc-eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~-~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.++|++.||. ++..+|++|++++++|+| |+|++.|++ +...........|+.+.+|++|+
T Consensus 12 ~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~y--Pvi~~lhG~--------------~~~~~~~~~~~~~~~~~~~~~vV 75 (265)
T d2gzsa1 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGY--PILYMLDGN--------------AVMDRLDDELLKQLSEKTPPVIV 75 (265)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCE--EEEEESSHH--------------HHHHHCCHHHHHHHTTSCCCEEE
T ss_pred eeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCc--eEEEEecCc--------------chhhhHHHHHHHHHHhcCCCeEE
Confidence 6889999999985 899999999999999877 999997743 11000001123578888999987
Q ss_pred e
Q 007338 560 A 560 (607)
Q Consensus 560 ~ 560 (607)
.
T Consensus 76 ~ 76 (265)
T d2gzsa1 76 A 76 (265)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.92 E-value=0.12 Score=48.04 Aligned_cols=72 Identities=15% Similarity=0.002 Sum_probs=45.1
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
+|+.+.+ .++. ......+.+||+.++ ... ..|+++|+++|+.+.+..................++
T Consensus 49 ~g~~~~~-~~~~--~~~~i~~~~dg~l~v-a~~-----------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~ 113 (295)
T d2ghsa1 49 SGRKTVH-ALPF--MGSALAKISDSKQLI-ASD-----------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS 113 (295)
T ss_dssp TTEEEEE-ECSS--CEEEEEEEETTEEEE-EET-----------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred CCeEEEE-ECCC--CcEEEEEecCCCEEE-EEe-----------CccEEeecccceeeEEeeeecCCCcccceeeEECCC
Confidence 4444433 3454 467788888986554 321 369999999999888765433211112345667788
Q ss_pred CeEEEEE
Q 007338 98 STLLIFT 104 (607)
Q Consensus 98 ~~~l~~~ 104 (607)
|+++|..
T Consensus 114 G~iw~~~ 120 (295)
T d2ghsa1 114 GALWIGT 120 (295)
T ss_dssp SCEEEEE
T ss_pred CCEEEEe
Confidence 9987765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.62 E-value=0.059 Score=51.87 Aligned_cols=64 Identities=9% Similarity=-0.003 Sum_probs=37.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC-CceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......|||||++|+.. . .+...|++++... |+...+..............+.++||++++|.+
T Consensus 146 h~h~v~~sPdG~~l~v~-d--------~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~ 210 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSA-D--------LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL 210 (365)
T ss_dssp CEEEEEECTTSSEEEEE-E--------TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred cceEEEECCCCCEEEEe-e--------CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEe
Confidence 45789999999997654 3 3445777776543 443322110000000113467899999987775
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.02 Score=55.67 Aligned_cols=62 Identities=23% Similarity=0.083 Sum_probs=38.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc--cccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~--~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......||||| .|| +.. ....|.++|+.+++.......... .....+..+.|+||+++|+..
T Consensus 186 ~~~~v~~s~dg-~la-sgs---------~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg 249 (393)
T d1sq9a_ 186 FATSVDISERG-LIA-TGF---------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249 (393)
T ss_dssp CCCEEEECTTS-EEE-EEC---------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred cEEEEEECCCC-EEE-EEe---------CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeee
Confidence 35678999998 443 332 235688889998875322111110 011235688999999988775
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=96.50 E-value=0.01 Score=57.03 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=63.4
Q ss_pred ceEEEEEECCCCceEEEEEE--cCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCC--CchhHHHhccCe
Q 007338 481 QKEMIKYQRKDGVPLTATLY--LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARRF 556 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~--~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~--~~~~q~la~~GY 556 (607)
+.|.+.+++.||..|.-+-+ .|.+..... +.|+||++||-. ++...|.... .....+|+++||
T Consensus 26 ~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~--~~~~vlllHG~~-----------~~~~~~~~~~~~~sla~~L~~~Gy 92 (377)
T d1k8qa_ 26 PAEEYEVVTEDGYILGIDRIPYGRKNSENIG--RRPVAFLQHGLL-----------ASATNWISNLPNNSLAFILADAGY 92 (377)
T ss_dssp CCEEEEEECTTSEEEEEEEECSCSSCCTTTT--TCCEEEEECCTT-----------CCGGGGSSSCTTTCHHHHHHHTTC
T ss_pred CceEEEEEcCCCCEEEEEEecCCCCCCccCC--CCCeEEEECCCc-----------cchhHHhhcCccchHHHHHHHCCC
Confidence 57889999999987766544 233333222 338888887531 1112232111 123568999999
Q ss_pred EEEeCCCCceeccCCC-------------CchhhHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 557 AVLAGPSIPIIGEGLW-------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 557 ~Vl~~~~~~~~g~g~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
-|+. ++. +|.|.. ....+......|+.++|+++.++--.+.=.|.-||
T Consensus 93 ~V~~-~D~--rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g~~~v~lvGhS 153 (377)
T d1k8qa_ 93 DVWL-GNS--RGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHS 153 (377)
T ss_dssp EEEE-CCC--TTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEET
T ss_pred EEEE-EcC--CCCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9998 554 344332 11223344577888888888775433333344443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.41 E-value=0.49 Score=46.14 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=26.9
Q ss_pred ceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccC
Q 007338 157 AQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (607)
Q Consensus 157 ~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~ 196 (607)
..|+++|+ +|+....+-+ .....+.|++|++.|+|+....
T Consensus 151 ~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~ 192 (430)
T d1qfma1 151 VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQ 192 (430)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCC
T ss_pred heeEEeccCcceecccccccccccceEEcCCCCEEEEEEecc
Confidence 57888898 6754332111 1235789999999999997653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.12 Score=47.39 Aligned_cols=67 Identities=7% Similarity=0.079 Sum_probs=40.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eec---ccCCCccccccccceEEecC
Q 007338 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPL---FESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~l---t~~~~~~~~~~~~~~~Wspd 97 (607)
.++.+-++. .++..+|||||++||..+. ++ .|.+||+.+++. ..+ ..+.. .+..+.|+|+
T Consensus 4 v~~~~~h~d-~I~~l~fsp~~~~L~s~s~--------Dg--~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~f~~~ 67 (342)
T d1yfqa_ 4 VQIEQAPKD-YISDIKIIPSKSLLLITSW--------DG--SLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDN 67 (342)
T ss_dssp EECSSCCSS-CEEEEEEEGGGTEEEEEET--------TS--EEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEES
T ss_pred EEcCCCCCC-CEEEEEEeCCCCEEEEEEC--------CC--eEEEEEccCCCcceEEEEecCCCC-----CEEEEEEeCC
Confidence 345444444 6899999999999887653 34 566666654432 222 11222 2668899987
Q ss_pred -CeEEEEE
Q 007338 98 -STLLIFT 104 (607)
Q Consensus 98 -~~~l~~~ 104 (607)
+.+++..
T Consensus 68 ~~~~l~sg 75 (342)
T d1yfqa_ 68 TDLQIYVG 75 (342)
T ss_dssp SSEEEEEE
T ss_pred CCCEEEEc
Confidence 5565554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.24 Score=44.74 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
....++|||||++|+..... ..+.+||+.++........ .-...+..++|+|+++.
T Consensus 164 ~v~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~~~~~~~~~-----------~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVM-------------GKILLYDLQSREVKTSRWA-----------FRTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEECCSC-----------CCSSCEEEEEECCCC--
T ss_pred ceeEEEeccCcccccccccc-------------ccccceeeccccccccccc-----------ccccccceeeecccccc
Confidence 45688999999998877532 3688999987764432110 00011234788887753
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEE
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~ 329 (607)
..... .....-........+++++. ...+.....+..+...+..+.|+|++. |+... .++.-+||.+
T Consensus 220 ~~~~~---~~~~~l~sgs~D~~i~iw~~-~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g--~D~~v~iW~i 286 (287)
T d1pgua2 220 ANEEE---IEEDLVATGSLDTNIFIYSV-KRPMKIIKALNAHKDGVNNLLWETPST-LVSSG--ADACIKRWNV 286 (287)
T ss_dssp ----C---CSCCEEEEEETTSCEEEEES-SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE--TTSCEEEEEE
T ss_pred ccccc---CCCCeeEeecCCCeEEEEEC-CCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE--CCCeEEEEEE
Confidence 11110 00000000111234566654 111111222223445678899999875 44332 2344566643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=95.89 E-value=0.036 Score=54.49 Aligned_cols=90 Identities=12% Similarity=-0.023 Sum_probs=54.0
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcc-----cc----cCCCceeEEEEECCCCcee-e
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEE-----DN----VSSCKLRVWIADAETGEAK-P 76 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~-----~~----~~~~~~~L~v~d~~~g~~~-~ 76 (607)
|.+-|+. +++..++...+........++||||+.++........ ++ .......+-.+|.++.+.. +
T Consensus 96 VavIDl~----t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q 171 (441)
T d1qnia2 96 VARIRLD----IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ 171 (441)
T ss_dssp EEEEETT----TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred EEEEECC----CCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence 3444554 6666666656766678889999999976554432100 00 0011234456888887753 3
Q ss_pred cccCCCccccccccceEEecCCeEEEEEec
Q 007338 77 LFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 77 lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~ 106 (607)
+. ... ....+.++||++.+|++..
T Consensus 172 I~-v~~-----~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 172 VI-VDG-----NLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp EE-ESS-----CCCCEEECSSSSEEEEEES
T ss_pred Ee-cCC-----CccceEECCCCCEEEEEec
Confidence 32 122 2568899999998887743
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=95.70 E-value=0.76 Score=42.10 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCeeecC-CCCceeeeeeCCCCceEEEEE
Q 007338 157 AQLVLGSLDGTAKDFG-TPAVYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 157 ~~l~~~~~~g~~~~lt-~~~~~~~~~~SpDg~~i~~~~ 193 (607)
.+|++++.+|+.+.+. .......++++|||+ ++++.
T Consensus 49 ~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~-l~v~~ 85 (302)
T d2p4oa1 49 GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATG 85 (302)
T ss_dssp TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEE
T ss_pred CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCC-eEEEe
Confidence 4677777766555443 234556889999998 44443
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.60 E-value=0.002 Score=59.23 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHhccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhccccccccccc
Q 007338 549 LIFLARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEH 606 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 606 (607)
+.++++||.|+. ++ |...+...+ ...++|+.++++||++..-.+.=.|+-|
T Consensus 61 ~~~~~~g~~v~~-~d-----Yrl~p~~~~-~~~~~d~~~~~~~l~~~~~~~~i~l~G~ 111 (263)
T d1vkha_ 61 SMDTESTVCQYS-IE-----YRLSPEITN-PRNLYDAVSNITRLVKEKGLTNINMVGH 111 (263)
T ss_dssp HHCTTCCEEEEE-EC-----CCCTTTSCT-THHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred HHHHhCCeEEEE-ec-----cccCcchhh-hHHHHhhhhhhhcccccccccceeeecc
Confidence 566789999998 33 211122223 3457899999999998764433333333
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.68 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=21.8
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
.....+++||+.|+.... ...|.++|+..++..+.
T Consensus 178 ~~~~~~~~~~~~l~s~~~----------dg~i~~~d~~~~~~~~~ 212 (342)
T d2ovrb2 178 NRVYSLQFDGIHVVSGSL----------DTSIRVWDVETGNCIHT 212 (342)
T ss_dssp SCEEEEEECSSEEEEEET----------TSCEEEEETTTCCEEEE
T ss_pred cccccccCCCCEEEEEeC----------CCeEEEeecccceeeeE
Confidence 445566778877665442 24677778887765433
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=95.20 E-value=0.0065 Score=55.28 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=28.0
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEecc
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~ 521 (607)
+++.++|+|. .|.+++.+||+|+++++ ++| |+||+.|+
T Consensus 14 ~~~~~~~~S~~lg~~~~~~v~~P~~~~~-~~~--Pvvv~lhG 52 (246)
T d3c8da2 14 PAKEIIWKSERLKNSRRVWIFTTGDVTA-EER--PLAVLLDG 52 (246)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCC--CEEEESSH
T ss_pred CcEEEEEECCCCCCEEEEEEEECCCCCC-CCC--CEEEEeCC
Confidence 7888999886 68899999999999875 445 99999874
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.82 Score=41.75 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=33.0
Q ss_pred eEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+.++|+.++.... ...|.++|+.+++.......... ......|++++..++..
T Consensus 165 ~~~~~~~~~~~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 219 (355)
T d1nexb2 165 RTVSGHGNIVVSGSY----------DNTLIVWDVAQMKCLYILSGHTD----RIYSTIYDHERKRCISA 219 (355)
T ss_dssp EEEEEETTEEEEEET----------TSCEEEEETTTTEEEEEECCCSS----CEEEEEEETTTTEEEEE
T ss_pred cccccccceeeeecc----------cceeeeeecccccceeeeecccc----ccccccccccceeeecc
Confidence 345677777665542 35778889988876544322211 14467788887766653
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.11 E-value=0.73 Score=39.33 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=89.9
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
..+-||+.||+ .-|++.++.. +. .++=.+..-|++.++|+... .+...||++ ++|+.+.|++.+
T Consensus 80 E~Hai~~~Nlk---~~GEE~~i~s-pk--~vRI~S~~yddk~vvF~Gas-------ed~~~LYvi--egGklrkL~~vP- 143 (313)
T d2hu7a1 80 EQHALFKVNTS---RPGEEQRLEA-VK--PMRILSGVDTGEAVVFTGAT-------EDRVALYAL--DGGGLRELARLP- 143 (313)
T ss_dssp CCEEEEEEETT---STTCEEECTT-SC--SBEEEEEEECSSCEEEEEEC-------SSCEEEEEE--ETTEEEEEEEES-
T ss_pred ceeeEEEEccC---CCCeeeEecC-Cc--eEEEEEeeecCceEEEeccc-------CCceEEEEE--eCCceeeeccCC-
Confidence 35678999997 3689999872 33 24455566799999999764 456777775 489999996443
Q ss_pred ccccccccceEEecC--CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 83 ICLNAVFGSFVWVNN--STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.|.|..| +.++.-.. - . + .....+|
T Consensus 144 --------pFsFVtDI~~d~I~G~g-------------------------~------~----~----------g~~~sfF 170 (313)
T d2hu7a1 144 --------GFGFVSDIRGDLIAGLG-------------------------F------F----G----------GGRVSLF 170 (313)
T ss_dssp --------SCEEEEEEETTEEEEEE-------------------------E------E----E----------TTEEEEE
T ss_pred --------CcceEEeccCCeEEEEe-------------------------e------e----c----------CCcceEE
Confidence 3445444 44544321 0 0 0 0124588
Q ss_pred EEeC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec
Q 007338 161 LGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (607)
Q Consensus 161 ~~~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (607)
+.|+ +|..+-++... .+..+..+++.+-+ +..+... .+.+..+|+.+++...+.
T Consensus 171 ~adl~SG~lri~tpkeGS~~~ay~~~gnKV~--sdyEt~g---------Esywit~D~~s~~yerve 226 (313)
T d2hu7a1 171 TSNLSSGGLRVFDSGEGSFSSASISPGMKVT--AGLETAR---------EARLVTVDPRDGSVEDLE 226 (313)
T ss_dssp EEETTTEEEEEECCSSEEEEEEEECTTSCEE--EEEEESS---------CEEEEEECTTTCCEEECC
T ss_pred EEecccCCEEEecCCCCcccceeEccCceee--eccCCCC---------ceEEEEEecccCceeeee
Confidence 8999 78998888654 66788889875542 2111110 123336788888777653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=1.5 Score=39.73 Aligned_cols=50 Identities=6% Similarity=-0.011 Sum_probs=32.4
Q ss_pred EEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.+++||++||-... ...|.++|+.+++.......... .+..+.|+|++.+
T Consensus 18 c~~~~~~~l~tgs~----------Dg~i~vWd~~~~~~~~~l~~H~~----~V~~l~~s~~~~l 67 (355)
T d1nexb2 18 CLQFEDNYVITGAD----------DKMIRVYDSINKKFLLQLSGHDG----GVWALKYAHGGIL 67 (355)
T ss_dssp EEEEETTEEEEEET----------TTEEEEEETTTTEEEEEEECCSS----CEEEEEEETTTEE
T ss_pred EEEECCCEEEEEeC----------CCeEEEEECCCCcEEEEEECCCC----CEEEEEEcCCCEE
Confidence 57889998765432 24688889999876433222222 2678899987644
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.45 Score=45.47 Aligned_cols=35 Identities=17% Similarity=-0.079 Sum_probs=21.3
Q ss_pred cccceeeEcCCCcEEEEEEeccccceEEEEEcCCCC
Q 007338 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 299 ~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
..+..++|||||+.|+...... ....+.+.|+.++
T Consensus 232 ~~V~~l~~spdg~~l~sgs~D~-t~~~i~lwd~~~g 266 (393)
T d1sq9a_ 232 NSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFG 266 (393)
T ss_dssp CCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTC
T ss_pred ceEEEcccccccceeeeecCCC-Ccceeeecccccc
Confidence 3466788999999877654221 1123445577763
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=94.06 E-value=0.058 Score=52.97 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=36.6
Q ss_pred EccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 007338 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (607)
Q Consensus 38 ~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~ 102 (607)
.+|||++| |+.+ .....|.++|+++++..++...+... ....+.++||++.++
T Consensus 79 gtpDGr~l-fV~d--------~~~~rVavIDl~t~k~~~ii~iP~g~---gphgi~~spdg~t~Y 131 (441)
T d1qnia2 79 GRYDGKYL-FIND--------KANTRVARIRLDIMKTDKITHIPNVQ---AIHGLRLQKVPKTNY 131 (441)
T ss_dssp TEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECTTCC---CEEEEEECCSSBCCE
T ss_pred ccCCCCEE-EEEc--------CCCCEEEEEECCCCcEeeEEecCCCC---CccceEEeccCCEEE
Confidence 36999886 5554 34578999999999987765443321 144789999977433
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.88 E-value=0.49 Score=42.50 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=36.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc-cCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt-~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+....|||||++|+.... ...|.++|+.+++..... .... ..+..+.|+|+++....
T Consensus 164 ~v~~~~~s~~~~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~~h~----~~v~~~~~~p~~~~~~~ 222 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDV----------MGKILLYDLQSREVKTSRWAFRT----SKINAISWKPAEKGANE 222 (287)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEECCSCCCS----SCEEEEEECCCC-----
T ss_pred ceeEEEeccCccccccccc----------cccccceeecccccccccccccc----cccceeeeccccccccc
Confidence 5788999999999876543 247888899988754221 1111 12567889988665443
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=93.88 E-value=0.066 Score=48.26 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=47.3
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
++++.||.+|+...+-|++ . |.||++|+.. +....| ....+.|+++||.|+. ++.|
T Consensus 2 ~i~~~dG~~l~y~~~G~~~------~--~~vv~lHG~~-----------~~~~~~----~~~~~~l~~~g~~vi~-~D~~ 57 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD------G--LPVVFHHGWP-----------LSADDW----DNQMLFFLSHGYRVIA-HDRR 57 (275)
T ss_dssp EEECTTSCEEEEEEESCTT------S--CEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE-ECCT
T ss_pred EEEecCCCEEEEEEecCCC------C--CeEEEECCCC-----------CCHHHH----HHHHHHHHhCCCEEEE-Eecc
Confidence 5788999999999997653 2 6677777421 111111 1225689999999998 6554
Q ss_pred eeccCCC--Cchh-hHHHHhhcHHHHHHHH
Q 007338 566 IIGEGLW--SNWF-QVQRLLLKKLFDVEWL 592 (607)
Q Consensus 566 ~~g~g~~--~~~~-~~~~~~~~~~~~v~~~ 592 (607)
|.|.. +... -...+.+|+.+-++.|
T Consensus 58 --G~G~s~~~~~~~~~~~~~~~~~~~l~~l 85 (275)
T d1a88a_ 58 --GHGRSDQPSTGHDMDTYAADVAALTEAL 85 (275)
T ss_dssp --TSTTSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred --cccccccccccccccccccccccccccc
Confidence 33332 1111 2244555555555554
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=93.39 E-value=0.012 Score=52.70 Aligned_cols=46 Identities=22% Similarity=-0.008 Sum_probs=26.8
Q ss_pred hHHHhccCeEEEeCCCCceeccCC-----CCchhhHHHHhhcHHHHHHHHHH
Q 007338 548 SLIFLARRFAVLAGPSIPIIGEGL-----WSNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g~g~-----~~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
.+.||++||+|+. ++.+..|... .....+.......+.+.++++++
T Consensus 44 ~~~la~~G~~V~~-~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (238)
T d1ufoa_ 44 LPGYAERGFLLLA-FDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARR 94 (238)
T ss_dssp STTTGGGTEEEEE-CCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEE-ecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHH
Confidence 4689999999999 7765544211 12333445555555555555444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=2.7 Score=37.45 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=24.3
Q ss_pred eeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..|..+++++.+...+..... ....+.+....+.+|++
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~-----~~~~id~d~~~~~lYw~ 47 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWS 47 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCS-----SEEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCcceeeeCCCC-----ceEEEEEEeCCCEEEEE
Confidence 568999999887766642211 13466777666666664
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.05 E-value=0.072 Score=48.23 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=36.1
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
.|..-||.+|+...+..++ ++ |+||++|+.+ +....| +.....++++||.|+. ++.+
T Consensus 5 ~~~~~~g~~i~y~~~g~~~---~~----~~iv~lHG~~-----------g~~~~~----~~~~~~~~~~~~~vi~-~D~~ 61 (290)
T d1mtza_ 5 NYAKVNGIYIYYKLCKAPE---EK----AKLMTMHGGP-----------GMSHDY----LLSLRDMTKEGITVLF-YDQF 61 (290)
T ss_dssp EEEEETTEEEEEEEECCSS---CS----EEEEEECCTT-----------TCCSGG----GGGGGGGGGGTEEEEE-ECCT
T ss_pred CeEEECCEEEEEEEcCCCC---CC----CeEEEECCCC-----------CchHHH----HHHHHHHHHCCCEEEE-EeCC
Confidence 4556699999987775432 12 8888877431 111122 2224578889999998 6654
Q ss_pred e
Q 007338 566 I 566 (607)
Q Consensus 566 ~ 566 (607)
-
T Consensus 62 G 62 (290)
T d1mtza_ 62 G 62 (290)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=91.28 E-value=0.19 Score=44.85 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=34.6
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
+|++.||.+|+.... ++ . |.||++|+.. +....| ......|+++||.|+. ++.|
T Consensus 2 ~f~~~dG~~i~y~~~-------G~-g--~pvvllHG~~-----------~~~~~~----~~~~~~l~~~~~~vi~-~D~~ 55 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW-------GS-G--QPIVFSHGWP-----------LNADSW----ESQMIFLAAQGYRVIA-HDRR 55 (273)
T ss_dssp EEECTTSCEEEEEEE-------SC-S--SEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE-ECCT
T ss_pred EEEeeCCcEEEEEEE-------CC-C--CeEEEECCCC-----------CCHHHH----HHHHHHHHhCCCEEEE-Eech
Confidence 689999999977654 22 2 4566777420 111111 1225688999999998 6654
Q ss_pred eec
Q 007338 566 IIG 568 (607)
Q Consensus 566 ~~g 568 (607)
..|
T Consensus 56 G~G 58 (273)
T d1a8sa_ 56 GHG 58 (273)
T ss_dssp TST
T ss_pred hcC
Confidence 433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.45 E-value=5.5 Score=35.24 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=31.2
Q ss_pred ceEEEEeCCC-CeeecC-CC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 157 AQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 157 ~~l~~~~~~g-~~~~lt-~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
..|++++++| ..+.+. .. .....+++..-++.|+++... ...|.++++++...+.|
T Consensus 58 ~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~------------~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 58 PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ------------LDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEE
T ss_pred CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC------------CCEEEEEecCCceEEEE
Confidence 4677777754 333332 22 233456665557778776422 23677788776654443
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=89.68 E-value=0.39 Score=42.48 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=33.6
Q ss_pred EEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc
Q 007338 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 486 ~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (607)
+|++.||.+|+...+ + + . |.||++|+.. ++...| ....+.|+++||.|+. ++.|
T Consensus 2 ~f~~~dG~~l~y~~~---G----~-g--~~vv~lHG~~-----------~~~~~~----~~~~~~l~~~g~~vi~-~D~~ 55 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW---G----S-G--KPVLFSHGWL-----------LDADMW----EYQMEYLSSRGYRTIA-FDRR 55 (271)
T ss_dssp EEECTTSCEEEEEEE---S----S-S--SEEEEECCTT-----------CCGGGG----HHHHHHHHTTTCEEEE-ECCT
T ss_pred EEEeECCeEEEEEEE---c----C-C--CeEEEECCCC-----------CCHHHH----HHHHHHHHhCCCEEEE-Eecc
Confidence 688899999986544 1 1 2 5567777420 111111 1224689999999998 5554
Q ss_pred ee
Q 007338 566 II 567 (607)
Q Consensus 566 ~~ 567 (607)
..
T Consensus 56 G~ 57 (271)
T d1va4a_ 56 GF 57 (271)
T ss_dssp TS
T ss_pred cc
Confidence 33
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.29 E-value=0.13 Score=44.55 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=28.4
Q ss_pred hHHHhccCeEEEeCCCCceeccCCC---CchhhHHHHhhcHHHHHHHHHHhcc
Q 007338 548 SLIFLARRFAVLAGPSIPIIGEGLW---SNWFQVQRLLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g~g~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 597 (607)
.+.|+++||.|+. ++.| |.|.. ...........++...+.++...+.
T Consensus 31 ~~~L~~~G~~v~~-~D~~--G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T d1tqha_ 31 GRFLESKGYTCHA-PIYK--GHGVPPEELVHTGPDDWWQDVMNGYEFLKNKGY 80 (242)
T ss_dssp HHHHHHTTCEEEE-CCCT--TSSSCHHHHTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCEEEE-EeCC--CCccccccccccchhHHHHHHHHHHhhhhhccc
Confidence 5799999999998 6664 44443 1222223445556666666655543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=7 Score=34.63 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=35.5
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
.+.|.+..+ .+.. .+++||++||-.+. + ..|.++|+.+++..+....... .+..+.|+++
T Consensus 9 ~~~l~GH~~--~V~s-~~~~~g~~l~sgs~--------D--g~i~vWd~~~~~~~~~~~~h~~----~V~~v~~~~~ 68 (342)
T d2ovrb2 9 PKVLKGHDD--HVIT-CLQFCGNRIVSGSD--------D--NTLKVWSAVTGKCLRTLVGHTG----GVWSSQMRDN 68 (342)
T ss_dssp CEEEECSTT--SCEE-EEEEETTEEEEEET--------T--SCEEEEETTTCCEEEECCCCSS----CEEEEEEETT
T ss_pred CEEECCcCC--ceEE-EEEECCCEEEEEeC--------C--CeEEEEECCCCCEEEEEeCCCC----CEEEEEeCCC
Confidence 344554433 2433 58899998765432 2 4688889999987544322222 2557788764
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.07 Score=46.67 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=35.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec
Q 007338 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g 568 (607)
-||.+|+.+-..|.. .+.+ |.||++|+.. ++...|.. ....+.|+++||.|+. ++.+-.|
T Consensus 13 v~G~~i~y~~~~~~~-~~~~----~~vvllHG~~-----------~~~~~w~~--~~~~~~la~~gy~via-~D~~G~G 72 (208)
T d1imja_ 13 VQGQALFFREALPGS-GQAR----FSVLLLHGIR-----------FSSETWQN--LGTLHRLAQAGYRAVA-IDLPGLG 72 (208)
T ss_dssp ETTEEECEEEEECSS-SCCS----CEEEECCCTT-----------CCHHHHHH--HTHHHHHHHTTCEEEE-ECCTTSG
T ss_pred ECCEEEEEEEecCCC-CCCC----CeEEEECCCC-----------CChhHHhh--hHHHHHHHHcCCeEEE-eeccccc
Confidence 499999988888864 2222 7778877421 00011110 0113679999999998 6665444
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=88.70 E-value=0.066 Score=49.66 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=14.7
Q ss_pred hhHHHhccCeEEEeCCCCc
Q 007338 547 SSLIFLARRFAVLAGPSIP 565 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~ 565 (607)
+.++|+++||.|+. ++.+
T Consensus 84 ~~~~~~~~Gy~V~~-~D~~ 101 (318)
T d1qlwa_ 84 WDEYFLRKGYSTYV-IDQS 101 (318)
T ss_dssp HHHHHHHTTCCEEE-EECT
T ss_pred HHHHHHhCCCEEEE-ecCC
Confidence 47899999999998 5543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.80 E-value=8.5 Score=33.90 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=32.8
Q ss_pred ceEEEEeCCCC-eeecCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 157 AQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 157 ~~l~~~~~~g~-~~~lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
..|.+++++|. .+.|... .....+++.|...+|+++..... ...|+..++++.....+
T Consensus 101 ~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~----------~~~I~r~~~dG~~~~~i 161 (263)
T d1npea_ 101 DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD----------NPKIETSHMDGTNRRIL 161 (263)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS----------SCEEEEEETTSCCCEEE
T ss_pred CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC----------CcEEEEecCCCCCceee
Confidence 35556666552 2233222 23457888888888887753211 12588888877644443
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.56 E-value=0.32 Score=44.91 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=44.7
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCC-----CCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhcc
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYD-----QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR 554 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~-----~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~ 554 (607)
+.+.++|.|. -|.++.-.||+|++|. ++|+ +|||.+.|+.. +....|.... ...++....
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~--yPVLYlLhG~~-----------~~~~~w~~~~-~~~~~~~~~ 78 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKR--IPTVFYLSGLT-----------CTPDNASEKA-FWQFQADKY 78 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTT--BCEEEEECCTT-----------CCHHHHHHHS-CHHHHHHHH
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCC--CCEEEEcCCCC-----------CCHHHHHHhh-hHHHHHHHc
Confidence 5677888877 6889999999999984 3344 49999988530 2122232111 124567778
Q ss_pred CeEEEeC
Q 007338 555 RFAVLAG 561 (607)
Q Consensus 555 GY~Vl~~ 561 (607)
|++|+.+
T Consensus 79 ~~~vv~~ 85 (299)
T d1pv1a_ 79 GFAIVFP 85 (299)
T ss_dssp TCEEEEC
T ss_pred CCceecC
Confidence 9999983
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=87.25 E-value=0.61 Score=41.91 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=33.3
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+.-.++..||.+|+..-.-+++ . |.||++||. +.. ...|.....++++||.|+. +
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~~------g--~pvvllHG~--------------~~~--~~~w~~~~~~l~~~~~vi~-~ 66 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNPN------G--KPAVFIHGG--------------PGG--GISPHHRQLFDPERYKVLL-F 66 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT------S--EEEEEECCT--------------TTC--CCCGGGGGGSCTTTEEEEE-E
T ss_pred cCCEEEeCCCcEEEEEEecCCC------C--CeEEEECCC--------------CCc--ccchHHHHHHhhcCCEEEE-E
Confidence 3344667899999988774431 2 556666742 111 0111222345567999998 6
Q ss_pred CCc
Q 007338 563 SIP 565 (607)
Q Consensus 563 ~~~ 565 (607)
+.+
T Consensus 67 D~r 69 (313)
T d1wm1a_ 67 DQR 69 (313)
T ss_dssp CCT
T ss_pred eCC
Confidence 653
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.73 Score=41.99 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=31.9
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
++..||.+|+..-. | . + |+||++||-. ++...| ....+.|+++||.|+. ++.
T Consensus 16 v~~~~g~~i~y~~~---G----~-g--p~vlllHG~~-----------~~~~~~----~~~~~~L~~~g~~vi~-~D~ 67 (322)
T d1zd3a2 16 VTVKPRVRLHFVEL---G----S-G--PAVCLCHGFP-----------ESWYSW----RYQIPALAQAGYRVLA-MDM 67 (322)
T ss_dssp EEEETTEEEEEEEE---C----C-S--SEEEEECCTT-----------CCGGGG----TTHHHHHHHTTCEEEE-EEC
T ss_pred EEECCCCEEEEEEE---c----C-C--CeEEEECCCC-----------CCHHHH----HHHHHHHHHCCCEEEE-ecc
Confidence 34568999887653 2 2 3 7888877421 111112 1236789999999997 554
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=86.93 E-value=0.22 Score=50.34 Aligned_cols=88 Identities=18% Similarity=0.416 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec-cCCCC
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG-EGLWS 573 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g-~g~~~ 573 (607)
|.--|+-|++..++++ +|||||+|+|.|.. |+...|.........+++.++.+|+. .+.+ .| -|.-.
T Consensus 98 L~LnI~~P~~~~~~~~--~PVlv~ihGG~f~~--------g~~~~~~~~~~~~~~~~~~~~vIvVt-~nYR-Lg~~GFl~ 165 (534)
T d1llfa_ 98 LTINVVRPPGTKAGAN--LPVMLWIFGGGFEI--------GSPTIFPPAQMVTKSVLMGKPIIHVA-VNYR-VASWGFLA 165 (534)
T ss_dssp CEEEEEECTTCCTTCC--EEEEEEECCSTTTS--------CCGGGSCCHHHHHHHHHTTCCCEEEE-ECCC-CHHHHHCC
T ss_pred CEEEEEECCCCCCCCC--CeEEEEECCCcccc--------CCCCCCCchhccchhhhccCCeEEEE-eecC-CCcccccC
Confidence 4445667877666554 59999999875432 22211211000112356678999998 3321 12 11100
Q ss_pred c---hh--hHHHHhhcHHHHHHHHHH
Q 007338 574 N---WF--QVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 574 ~---~~--~~~~~~~~~~~~v~~~~~ 594 (607)
. +. -+-.-+.|++.|++|+-+
T Consensus 166 ~~~~~~~~~gN~Gl~Dq~~AL~WV~~ 191 (534)
T d1llfa_ 166 GDDIKAEGSGNAGLKDQRLGMQWVAD 191 (534)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred CcccccccccccchhHHHHHHHHHHh
Confidence 0 00 112457799999999754
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=86.78 E-value=0.48 Score=42.09 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=33.0
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
++++||.+|+.... + + . |.||++|+.. ++...| ....+.|+++||.|+. ++.|.
T Consensus 3 ~~t~dG~~l~y~~~---G----~-g--~~ivlvHG~~-----------~~~~~~----~~~~~~l~~~g~~vi~-~D~~G 56 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW---G----Q-G--RPVVFIHGWP-----------LNGDAW----QDQLKAVVDAGYRGIA-HDRRG 56 (274)
T ss_dssp EECTTSCEEEEEEE---C----S-S--SEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE-ECCTT
T ss_pred EECcCCCEEEEEEE---C----C-C--CeEEEECCCC-----------CCHHHH----HHHHHHHHHCCCEEEE-EeCCC
Confidence 57889999986654 2 1 2 5567777420 111111 1224678899999998 66544
Q ss_pred ec
Q 007338 567 IG 568 (607)
Q Consensus 567 ~g 568 (607)
.|
T Consensus 57 ~G 58 (274)
T d1a8qa_ 57 HG 58 (274)
T ss_dssp ST
T ss_pred Cc
Confidence 33
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=85.99 E-value=0.87 Score=38.65 Aligned_cols=25 Identities=0% Similarity=-0.319 Sum_probs=19.8
Q ss_pred HHHhhcHHHHHHHHHHhcccccccc
Q 007338 579 QRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 579 ~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
....+.+.+.++++.++-.+|.+++
T Consensus 73 ~~~~~~~~~~i~~~~~~~~~d~~~i 97 (202)
T d2h1ia1 73 IFRTKELNEFLDEAAKEYKFDRNNI 97 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHHHHHHHHHHhccccccce
Confidence 3446678889999999988898875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.06 E-value=11 Score=32.68 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=33.4
Q ss_pred eecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 24 VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 24 lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
++.+.........++++||+ |+++.. .....+..++..+.....+. ... .. ....+++++++++++.
T Consensus 7 ~~~~~~~~~P~~vavd~dG~-i~v~~~--------~~~~~i~~~~~~~~~~~~~~-~~~--~~-~p~gvav~~~g~i~v~ 73 (260)
T d1rwia_ 7 FTGIDFRLSPSGVAVDSAGN-VYVTSE--------GMYGRVVKLATGSTGTTVLP-FNG--LY-QPQGLAVDGAGTVYVT 73 (260)
T ss_dssp CCSCCSCCCEEEEEECTTCC-EEEEEC--------SSSCEEEEEC----CEEECC-CCS--CC-SCCCEEECTTCCEEEE
T ss_pred cccCCCcCCCCEEEEcCCCC-EEEEEc--------CCCCEEEEEcCCCceEEEec-cCC--cc-CceEEEEcCCCCEEEe
Confidence 33333333456779999997 333332 23356777766544433332 111 11 1346778888876543
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=85.01 E-value=0.77 Score=41.82 Aligned_cols=57 Identities=12% Similarity=-0.013 Sum_probs=33.1
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g 568 (607)
+.||..|+-+=.-|++ ..|+||++||-. ++...| ......|+++||.|+. ++.|-.|
T Consensus 30 ~~~g~~~~y~~~G~~~-------~~p~llllHG~~-----------~~~~~~----~~~~~~l~~~~~~vi~-~Dl~G~G 86 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNSD-------AEDVFLCLHGEP-----------TWSYLY----RKMIPVFAESGARVIA-PDFFGFG 86 (310)
T ss_dssp TCTTCEEEEEEEECTT-------CSCEEEECCCTT-----------CCGGGG----TTTHHHHHHTTCEEEE-ECCTTST
T ss_pred CCCCEEEEEEEecCCC-------CCCEEEEECCCC-----------CchHHH----HHHHHHhhccCceEEE-eeecCcc
Confidence 4589998754332321 238999887421 111111 2235689999999998 6664433
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.24 E-value=1.3 Score=40.00 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=55.5
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCC--CCchhHHHhccCeE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARRFA 557 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~--~~~~~q~la~~GY~ 557 (607)
+.+.+++.|. .|.+|+-.|+.|. + ++|||++.|+. ++...+..+ .....+++++.|++
T Consensus 8 ~v~~~~~~s~~~~r~~~~~v~~p~-----~--~~Pvl~llhG~------------~~~~d~~~~~~~~~~~~~~~~~~~~ 68 (288)
T d1sfra_ 8 PVEYLQVPSPSMGRDIKVQFQSGG-----A--NSPALYLLDGL------------RAQDDFSGWDINTPAFEWYDQSGLS 68 (288)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS-----T--TBCEEEEECCT------------TCCSSSCHHHHHCCHHHHHTTSSCE
T ss_pred EEEEEEEECCCCCcEEEEEEeCCC-----C--CceEEEEcCCC------------CCCCcchhhhhhccHHHHHHhCCCE
Confidence 5677788766 7889998887763 3 34999998853 111111100 01225788999999
Q ss_pred EEeCCCCceec-cCCC----------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 558 VLAGPSIPIIG-EGLW----------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 558 Vl~~~~~~~~g-~g~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
|+. +.....+ ++.. ....|...+. ..-|.+|.++--+|.+++
T Consensus 69 ~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~el~~~i~~~~~~d~~r~ 121 (288)
T d1sfra_ 69 VVM-PVGGQSSFYSDWYQPACGKAGCQTYKWETFLT---SELPGWLQANRHVKPTGS 121 (288)
T ss_dssp EEE-ECCCTTCTTCBCSSCEEETTEEECCBHHHHHH---THHHHHHHHHHCBCSSSE
T ss_pred EEE-eccCCCCCCccccCcccccccccchhHHHHHH---HHhHHHHHHhcCCCCCce
Confidence 998 3322211 1111 1123333333 344566666666777663
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=82.80 E-value=0.84 Score=41.02 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=32.9
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g 568 (607)
..+|.+|+...+-++ + . |.||++|+. +.....+.....+.|+++||-|+. ++.+..|
T Consensus 6 ~~g~~~i~y~~~G~~----~--~--p~vvl~HG~--------------~~~~~~~~~~~~~~l~~~g~~vi~-~D~~G~G 62 (297)
T d1q0ra_ 6 PSGDVELWSDDFGDP----A--D--PALLLVMGG--------------NLSALGWPDEFARRLADGGLHVIR-YDHRDTG 62 (297)
T ss_dssp EETTEEEEEEEESCT----T--S--CEEEEECCT--------------TCCGGGSCHHHHHHHHTTTCEEEE-ECCTTST
T ss_pred EECCEEEEEEEecCC----C--C--CEEEEECCC--------------CcChhHHHHHHHHHHHhCCCEEEE-EeCCCCc
Confidence 346788887777432 1 2 778887742 111111111124688999999998 6654333
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=82.34 E-value=0.47 Score=47.08 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec-cCC--
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG-EGL-- 571 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g-~g~-- 571 (607)
|+--|+.|.. +++ ++||+||+|+|-|.. |+...+. +....+.+.++.+|+. .+.+ .| -|.
T Consensus 82 L~lni~~P~~--~~~--~lPV~v~ihGG~~~~--------g~~~~~~---~~~~~~~~~~~vVvV~-~nYR-lg~~GFl~ 144 (483)
T d1qe3a_ 82 LYVNVFAPDT--PSQ--NLPVMVWIHGGAFYL--------GAGSEPL---YDGSKLAAQGEVIVVT-LNYR-LGPFGFLH 144 (483)
T ss_dssp CEEEEEEECS--SCC--SEEEEEEECCSTTTS--------CCTTSGG---GCCHHHHHHHTCEEEE-ECCC-CHHHHSCC
T ss_pred CEEEEEECCC--CCC--CCceEEEEeeccccc--------CCccccc---cccccccccCceEEEe-eccc-ccchhhcc
Confidence 4445566864 334 469999999764332 2211110 1112344444688887 3321 12 121
Q ss_pred --CCchh-hHHHHhhcHHHHHHHHHHhccc
Q 007338 572 --WSNWF-QVQRLLLKKLFDVEWLIQAELL 598 (607)
Q Consensus 572 --~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 598 (607)
+..+. -+-.-+.|++.|++| |++.|.
T Consensus 145 ~~~~~~~~~gN~Gl~Dq~~AL~W-V~~nI~ 173 (483)
T d1qe3a_ 145 LSSFDEAYSDNLGLLDQAAALKW-VRENIS 173 (483)
T ss_dssp CTTTCTTSCSCHHHHHHHHHHHH-HHHHGG
T ss_pred ccccccccccccccHHHHHHHHH-HHHHHH
Confidence 11110 011237899999999 566665
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=82.25 E-value=0.35 Score=48.99 Aligned_cols=88 Identities=17% Similarity=0.315 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec-cCCCC
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG-EGLWS 573 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g-~g~~~ 573 (607)
|+--|+.|++..+++| +||+||+|+|-|..| +...+....+....+.+.++.+|+. .+.+ .| .|-=.
T Consensus 106 L~LnI~~P~~~~~~~~--lPV~V~ihGG~f~~G--------~~~~~~~~~~~~~~~~~~~~vIvVt-~nYR-lg~~Gfl~ 173 (544)
T d1thga_ 106 LYLNVFRPAGTKPDAK--LPVMVWIYGGAFVYG--------SSAAYPGNSYVKESINMGQPVVFVS-INYR-TGPFGFLG 173 (544)
T ss_dssp CEEEEEEETTCCTTCC--EEEEEEECCCTTCCS--------GGGGCCSHHHHHHHHHTTCCCEEEE-ECCC-CHHHHHCC
T ss_pred CEEEEEECCCCCCCCC--CCEEEEeccCCCccC--------CCccCCcchhhhhhhhccCCeEEEe-cccc-cccccccC
Confidence 4444557887777664 599999998755433 1111111001112244556777777 3321 12 11100
Q ss_pred chhh-----HHHHhhcHHHHHHHHHH
Q 007338 574 NWFQ-----VQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 574 ~~~~-----~~~~~~~~~~~v~~~~~ 594 (607)
.... +-.-+.|++.|.+|+-+
T Consensus 174 ~~~~~~~~~gN~Gl~Dq~~AL~WV~~ 199 (544)
T d1thga_ 174 GDAITAEGNTNAGLHDQRKGLEWVSD 199 (544)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred CchhhccccccHHHHHhhhhhhhhhh
Confidence 0000 11237788999999754
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=81.90 E-value=1.4 Score=40.13 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=35.9
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+.-.++..||.+|+...+=.+ +. |.||++||. |... ..+.....+.++||-|+. +
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~------~g--~pvvllHG~--------------~g~~--~~~~~~~~~l~~~~~Vi~-~ 66 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNP------HG--KPVVMLHGG--------------PGGG--CNDKMRRFHDPAKYRIVL-F 66 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECT------TS--EEEEEECST--------------TTTC--CCGGGGGGSCTTTEEEEE-E
T ss_pred CCCEEEeCCCcEEEEEEecCC------CC--CEEEEECCC--------------CCCc--cchHHHhHHhhcCCEEEE-E
Confidence 555667789999988877322 12 556666642 2110 111223455678999998 6
Q ss_pred CCceeccCCC
Q 007338 563 SIPIIGEGLW 572 (607)
Q Consensus 563 ~~~~~g~g~~ 572 (607)
+. .|.|..
T Consensus 67 D~--rG~G~S 74 (313)
T d1azwa_ 67 DQ--RGSGRS 74 (313)
T ss_dssp CC--TTSTTS
T ss_pred ec--cccCCC
Confidence 55 345443
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