Citrus Sinensis ID: 007346


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------
MEKSEPTLVPQWLRNAGSVTGGGGSTNHFSSSSHSDVPSSVHHTRTRNSKSGSDFDAPRSAFLDRSSSSNSRRSSSNGSAKHAYSSFNRNHRDKDRERDKERSSYGDLWDRDSSDPLGSILSSRMEKDLRRSHSMVSRKQNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKKVVFEKDFPSLGSEEKQGVPDIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPIIGNSSSGSLSAQTGSGTTLSGPPSVMAGLNMAEALAQAPSRARTAPQLSVKTQRLDELTIKKSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAVKNGQQQPAPLHHANQSLHVGNVKTDVPKTSHGKLLVLKPAWENGVSHSPKDGASPTNNANSRATTSQSTAVPSVASATPRSPNNPKLPSGERKATALNPISGFSAERRPSLSQTQSRNDFFNLLKKKTSMNTSGLPADSGTDIPSPAGEKHGEVTKDVISAPSSPHVIENGAQVTINGGTHKETQRFSGAGEKTMSRYAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEKRGMQLKLPQFHATSVVGASSELSSSDSGSEA
ccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccc
cccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHcccccccccccccccccccccEEccccccEEEccccccccccccccccccEEEcccccccccccccccccccEccccccccccccccccccccEcccccccEEEEcccEcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccHHHccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHccHHHHHHHHHHHcccccccccccccccccccHHHcccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccc
MEKSEPTLVPQWLrnagsvtggggstnhfsssshsdvpssvhhtrtrnsksgsdfdaprsafldrssssnsrrsssngsakhayssfnrnhrdkdrerdkerssygdlwdrdssdplgsILSSRMEKDLRRSHSMVSRKQNELLPRRVAVdskinsnsnhingnddvtggstgsSIKKVVfekdfpslgseekqgvpdigrvsspglssavqslpvgnstliggegwtsalaevppiignsssgslsaqtgsgttlsgppsvmAGLNMAEALAqapsrartapqlsvktqRLDELTikkskqlipvtpsmpkssvlnfsdkskpktaVRISDMSMAVkngqqqpaplhhanqslhvgnvktdvpktshgkllvlkpawengvshspkdgasptnnansrattsqstavpsvasatprspnnpklpsgerkatalnpisgfsaerrpslsqtqSRNDFFNLLKkktsmntsglpadsgtdipspagekhgevtkdvisapssphviengaqvtinggthketqrfsgagektmsryaavdpdEEAAFLRSLgweensgedeglTEEEIKAFYQEFEKRGmqlklpqfhatsvvgasselsssdsgsea
MEKSEPTLVPQWLRNAGSVTGGGGSTNHFSssshsdvpssvhhtrtrnsksgsdfdaprsafldrssssnsrrsssngsakhayssfnrnhrdkdrerdkerssygdlwdrdssdplgsilssrmekdlrrshsmvsrkqnellprrVAVDskinsnsnhingnddvtggsTGSSIKKVVFEKDFpslgseekqgvpdIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPIIGNSSSGSLSAQTGSGTTLSGPPSVMAGLNMAEALAQApsrartapqlsvktqrldeltikkskqlipvtpsmpkssvlnfsdkskpKTAVRISDMSMAVKNGQQQPAPLHHANQSLHVGNVKTDVPKTSHGKLLVLKPAWENGVshspkdgasptnnansrattsqstavpsvasatprspnnpklpsgerkATALNPisgfsaerrpslsqtqsRNDFFNLLKKKtsmntsglpadsgtdipspaGEKHGEVTKDVISAPSSPHVIENGaqvtinggthketqrfsgagekTMSRYAAVDPDEEAAFLRSLGWeensgedegltEEEIKAFYQEFEKRGMQLKLPQFHATSvvgasselsssdsgsea
MEKSEPTLVPQWLRNAGSVTggggstnhfsssshsdvpssvhhTRTRNSKSGSDFDAPRSAFLDrssssnsrrsssngsAKHAYSSFNRNHrdkdrerdkerSSYGDLWDRDSSDPLGSILSSRMEKDLRRSHSMVSRKQNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKKVVFEKDFPSLGSEEKQGVPDIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPIIgnsssgslsaqtgsgttlsgPPSVMAGLNMAEALAQAPSRARTAPQLSVKTQRLDELTIKKSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAVKNGQQQPAPLHHANQSLHVGNVKTDVPKTSHGKLLVLKPAWENGVSHSPKDGASPTNNANSRATTSQSTAVPSVASATPRSPNNPKLPSGERKATALNPISGFSAERRPSLSQTQSRNDFFNLLKKKTSMNTSGLPADSGTDIPSPAGEKHGEVTKDVISAPSSPHVIENGAQVTINGGTHKETQRFSGAGEKTMSRYAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEKRGMQLKLPQFHATsvvgasselsssdsgsea
***************************************************************************************************************************************************************************************************************************TLIGGEGWTSALAEV***************************************************************************************************************************************KLLVLKPA***********************************************************************************************************************************************************************************************AFYQEF*********************************
****EPTLVPQWLRNA***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEK*******************************
********VPQWLRNAGSVTGGGG*******************************DAPRSA*********************************************DLWDRDSSDPLGSILSSRM**************QNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKKVVFEKDFPSLGSEEKQGVPDIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPIIGNS***************SGPPSVMAGLNMAEAL***************KTQRLDELTIKKSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAVKNGQQQPAPLHHANQSLHVGNVKTDVPKTSHGKLLVLKPAWENGV**********************************************RKATALNPISGFS**********QSRNDFFNLLKKKTSMNTSGLPADSGTDIPSPAGEKHGEVTKDVISAPSSPHVIENGAQVTINGGTHKETQRFSGAGEKTMSRYAAVDPDEEAAFLRSLGWEE********TEEEIKAFYQEFEKRGMQLKLPQFHATS*****************
******TL**************************************************************************************************************************************LLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKKVVFEKDFPSLG********DIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPIIG**************************************RARTAPQLSVKTQRLDELTIKKSKQLIPVTPS***************K********************************************KLLVLKPAW****************************************************************************NDFFNLLKK*************************************************************************AVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEKRGMQLKLPQFHAT******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKSEPTLVPQWLRNAGSVTGGGGSTNHFSSSSHSDVPSSVHHTRTRNSKSGSDFDAPRSAFLDRSSSSNSRRSSSNGSAKHAYSSFNRNHRDKDRERDKERSSYGDLWDRDSSDPLGSILSSRMEKDLRRSHSMVSRKQNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKKVVFEKDFPSLGSEEKQGVPDIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPIIGNSSSGSLSAQTGSGTTLSGPPSVMAGLNMAEALAQAPSRARTAPQLSVKTQRLDELTIKKSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAVKNGQQQPAPLHHANQSLHVGNVKTDVPKTSHGKLLVLKPAWENGVSHSPKDGASPTNNANSRATTSQSTAVPSVASATPRSPNNPKLPSGERKATALNPISGFSAERRPSLSQTQSRNDFFNLLKKKTSMNTSGLPADSGTDIPSPAGEKHGEVTKDVISAPSSPHVIENGAQVTINGGTHKETQRFSGAGEKTMSRYAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEKRGMQLKLPQFHATSVVGASSELSSSDSGSEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query607
255545548596 conserved hypothetical protein [Ricinus 0.943 0.961 0.668 0.0
449445232615 PREDICTED: uncharacterized protein LOC10 0.978 0.965 0.602 1e-175
356548629621 PREDICTED: uncharacterized protein LOC10 0.991 0.969 0.587 1e-175
224063152591 predicted protein [Populus trichocarpa] 0.930 0.956 0.633 1e-171
356551596618 PREDICTED: uncharacterized protein LOC10 0.985 0.967 0.590 1e-171
356515844614 PREDICTED: uncharacterized protein LOC10 0.976 0.965 0.581 1e-168
357489137685 hypothetical protein MTR_5g060420 [Medic 0.988 0.875 0.576 1e-167
356507676609 PREDICTED: uncharacterized protein LOC10 0.970 0.967 0.574 1e-166
449507725536 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.858 0.972 0.619 1e-159
449449867619 PREDICTED: uncharacterized protein LOC10 0.953 0.935 0.547 1e-148
>gi|255545548|ref|XP_002513834.1| conserved hypothetical protein [Ricinus communis] gi|223546920|gb|EEF48417.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/604 (66%), Positives = 460/604 (76%), Gaps = 31/604 (5%)

Query: 1   MEKSEPTLVPQWLRNAGSVTGGGGSTNHFSSSSHSDVPSSVHHTRTR-NSKSGSDFDAPR 59
           ME+SEPTLVP+WLR++GSV GGG S +HF+SSS     SS  H     NSKS SDFD+PR
Sbjct: 1   MERSEPTLVPEWLRSSGSVPGGGSSAHHFASSSPHSDVSSSVHHSRSRNSKSTSDFDSPR 60

Query: 60  SAFLDRSSSSNSRRSSSNGSAKHAYSSFNRNHRDKDRERDKERSSYGDLWDRDSSDPLGS 119
           SAFLDR+SSSNSRRSSSNGSAKHAYSSF+R+HRDKDRERDKER ++G+ WD D+SDPLGS
Sbjct: 61  SAFLDRTSSSNSRRSSSNGSAKHAYSSFSRSHRDKDRERDKERLNFGNHWDNDASDPLGS 120

Query: 120 ILSSRMEKD-LRRSHSMVSRKQNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKK 178
           IL SR EKD LRRSHSMVSRK  E+LPRR A D +  SNSNH+NGN  ++GG  G+SI K
Sbjct: 121 IL-SRNEKDALRRSHSMVSRKLGEVLPRRFAADLRNGSNSNHVNGNGLISGGGVGNSIPK 179

Query: 179 VVFEKDFPSLGSEEKQGVPDIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPII 238
            VFEKDFPSLGSEE+QG PDIGRVSSPGLS+AVQSLPV +S LIGGEGWTSALAEVP II
Sbjct: 180 AVFEKDFPSLGSEERQGAPDIGRVSSPGLSTAVQSLPVSSSALIGGEGWTSALAEVPAII 239

Query: 239 GNSSSGSLSAQTGSGTTLSGPPSVMAGLNMAEALAQAPSRARTAPQLSVKTQRLDELTIK 298
           GN+SSGS S+     T+ SG PS +AGLNMAEAL QAP+R RTAPQLSV+TQRL+EL IK
Sbjct: 240 GNNSSGSSSSVQTVATSASGAPSTVAGLNMAEALTQAPTRTRTAPQLSVQTQRLEELAIK 299

Query: 299 KSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAVKNGQQQPAPLHHANQSLHVGN 358
           +S+QLIPVTPSMPKSSVLN SDKSKPKT VR S+M+MA KN QQQP+ LH   QSL  G+
Sbjct: 300 QSRQLIPVTPSMPKSSVLNSSDKSKPKTVVRSSEMNMAPKNLQQQPSSLHAVTQSLAGGH 359

Query: 359 VKTDVPKTSHGKLLVLKPAWENGVSHSPKDGASPTNNANSRATTSQSTAVPSVASATPRS 418
           VK+D  K SHGKL VLKP WENG S SPKD A+P NNA  RA  SQ  A PSV SA  RS
Sbjct: 360 VKSDASKASHGKLFVLKPGWENGASPSPKDIANP-NNAG-RAANSQLAAAPSVPSAPLRS 417

Query: 419 PNNPKLPSGERKATALNPISGFSAERRPSLSQTQSRNDFFNLLKKKTSMNTSGLPADSGT 478
           PNNPKL +GERK+ +LN ISGF+ E+RP LSQTQSR+DFFNLLKKKT  N+S    DS +
Sbjct: 418 PNNPKLSAGERKSASLNLISGFNVEKRPLLSQTQSRHDFFNLLKKKTLKNSSTALTDSAS 477

Query: 479 DIPSPAGEKHGEVTKDVISAPSSPHVIENGAQVTINGGTHKETQRFSGAGEKTMSRYAAV 538
            I SP  EK  E+ K+  SAPS P  I+NG+++T NGGT +E                  
Sbjct: 478 AISSPTNEKACEINKEAASAPSCPQAIKNGSELTGNGGTCEEVS---------------- 521

Query: 539 DPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEK--------RGMQLKLPQFHATS 590
             +EEAAFLRSLGWEENSGEDEGLTEEEI AF QE  K        RGMQ KL + HAT 
Sbjct: 522 --EEEAAFLRSLGWEENSGEDEGLTEEEINAFIQECMKLKPSLKVCRGMQQKLIESHATG 579

Query: 591 VVGA 594
           +V A
Sbjct: 580 LVRA 583




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445232|ref|XP_004140377.1| PREDICTED: uncharacterized protein LOC101213347 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548629|ref|XP_003542703.1| PREDICTED: uncharacterized protein LOC100800475 [Glycine max] Back     alignment and taxonomy information
>gi|224063152|ref|XP_002301016.1| predicted protein [Populus trichocarpa] gi|222842742|gb|EEE80289.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551596|ref|XP_003544160.1| PREDICTED: uncharacterized protein LOC100799079 [Glycine max] Back     alignment and taxonomy information
>gi|356515844|ref|XP_003526607.1| PREDICTED: uncharacterized protein LOC100812026 [Glycine max] Back     alignment and taxonomy information
>gi|357489137|ref|XP_003614856.1| hypothetical protein MTR_5g060420 [Medicago truncatula] gi|355516191|gb|AES97814.1| hypothetical protein MTR_5g060420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356507676|ref|XP_003522590.1| PREDICTED: uncharacterized protein LOC100791100 [Glycine max] Back     alignment and taxonomy information
>gi|449507725|ref|XP_004163112.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101231906 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449867|ref|XP_004142686.1| PREDICTED: uncharacterized protein LOC101213356 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query607
TAIR|locus:2203084581 AT1G36990 [Arabidopsis thalian 0.820 0.857 0.445 2.7e-93
TAIR|locus:2133564551 AT4G08510 [Arabidopsis thalian 0.645 0.711 0.408 1.2e-63
TAIR|locus:2203084 AT1G36990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 232/521 (44%), Positives = 294/521 (56%)

Query:     1 MEKSEPTLVPQWLRNAGSVTXXXXXXXXXXXXXXXXXXXXXXX-TRTRNSKSGSDFDAPR 59
             M+K E +L P+WLR++G  +                        +R RNS+S SD D+  
Sbjct:     1 MDKGEHSLAPEWLRSSGHASGGGSSNHLLVSSSSHSDSASLQYNSRNRNSRSKSDVDSIH 60

Query:    60 SAFLDXXXXXXXXXXXXXXXAKHAYSSFNRNHXXXXXXXXXXXS--SYGDLWDRDSSDPL 117
             S FLD               AKHAYSSFN N               SY D WD D+S PL
Sbjct:    61 SPFLDRSSSTNSRRGSSNGSAKHAYSSFNFNRSQRDKDRSRDKDRVSYVDPWDLDTSIPL 120

Query:   118 GSILSSRMEKDLRRSHSMVSRKQNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIK 177
              +IL+ R    LRRSHSMV+RKQ E L R + V      +SN  NGN  ++G S G+S +
Sbjct:   121 RTILTGRDPDPLRRSHSMVTRKQGEHLSRGLTVGLNNGGSSNSYNGNGLLSGPSIGNSFQ 180

Query:   178 KVVFEKDFPSLGSEEKQGVPDIGRVSSPGLSSAVQSLPVGNSTLIGGEGWTSALAEVPPI 237
             +  F+KDFPSLG+EEKQ   D+ RVSSPG+SS VQ+LPVGNS LIGGEGWTSALAEVP +
Sbjct:   181 RTGFDKDFPSLGAEEKQNGQDVVRVSSPGISSVVQNLPVGNSALIGGEGWTSALAEVPNV 240

Query:   238 IXXXXXXXXXX--XXXXXXXXXXPPSVMAGLNMAEALAQAPSRARTAPQLSVKTQRLDEL 295
             I                       PS   GLNMAEAL QAP+R  T PQ SVKTQRL++L
Sbjct:   241 IEKACTGSLTSPKANAVSAGTLTGPS---GLNMAEALVQAPARTHTPPQGSVKTQRLEDL 297

Query:   296 TIKKSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAV-KNGQQQPAPLHHANQSL 354
              IK+S+QLIPV PS PK   LN SDKSK K  VR  +  +A  +N  QQPA L  + QS 
Sbjct:   298 AIKQSRQLIPVVPSAPKGLSLNSSDKSKTKQVVRTGETCLAPSRNALQQPAVLLGSFQSN 357

Query:   355 HVGNVKTDVPKTSHGKLLVLKPAWENGVSHSPKDGASPTNNANSRATTSQSTA-VPSVAS 413
               G +K   P+    KLLVLKPA ENGVS + K+  SP+ N N+RA +SQ  +   S  S
Sbjct:   358 PSGQIK---PEK---KLLVLKPARENGVS-AVKESGSPSANTNTRAASSQLMSNTQSTQS 410

Query:   414 ATPRSPNNPKLPSGERKATALNPISGFSAERRPSLSQTQSRNDFFNLLKKKTSMNTSGL- 472
             A  RS N+PK   G   A+A + ISG + E++PS +Q QSR+ F++ LK+K + +TS   
Sbjct:   411 APVRSTNSPKELKG---ASAFSMISGQTIEKKPSAAQAQSRSAFYSALKQKQTASTSITT 467

Query:   473 -PADSGTDIPSPAGEKHGEVTKDVISAPSSPHVIENGAQVT 512
              P  S T   S    K    +KD+I++  S     +G +VT
Sbjct:   468 DPVSSSTSASSSVEVKLNS-SKDLIASDPSSSQATSGVEVT 507


GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2133564 AT4G08510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 607
PF1533797 Vasculin: Vascular protein family Vasculin-like 1 95.89
PF10231126 DUF2315: Uncharacterised conserved protein (DUF231 83.56
>PF15337 Vasculin: Vascular protein family Vasculin-like 1 Back     alignment and domain information
Probab=95.89  E-value=0.011  Score=53.24  Aligned_cols=34  Identities=38%  Similarity=0.726  Sum_probs=28.8

Q ss_pred             HHHHHHHHhhCCccCCCCCC---CCCHHHHHHHHHHH
Q 007346          541 DEEAAFLRSLGWEENSGEDE---GLTEEEIKAFYQEF  574 (607)
Q Consensus       541 eeE~afLrSLGWee~~~~~e---~lTeEEi~af~~~~  574 (607)
                      |-|-..||..||.|..+.||   +|||+|+++|.-+-
T Consensus        10 EaEhRLLk~MGWqEy~eNde~~~PlTEDElkEF~~ks   46 (97)
T PF15337_consen   10 EAEHRLLKAMGWQEYPENDENCLPLTEDELKEFQVKS   46 (97)
T ss_pred             HHHHHHHHHhcccccCcCCcccCcCcHHHHHHHHHHH
Confidence            77889999999999775555   89999999998653



>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query607
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 76/561 (13%), Positives = 142/561 (25%), Gaps = 208/561 (37%)

Query: 88  NRNHRDKDRERDKERSSYGDL-----------WD-RDSSDPLGSILSSRMEKDLRRSHSM 135
           + +H   D E  + +  Y D+           +D +D  D   SILS      +  S   
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 136 VSR----------KQNELLPRRVAVDSKINSNSNHINGNDDVTGGSTGSSIKKVVFEKDF 185
           VS           KQ E++ +   V+  +  N   +            S IK    E+  
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFL-----------MSPIKT---EQRQ 104

Query: 186 PSLGSEE----------------KQGVPDIGRVSSPGLSSAVQSL-PVGNSTLIGGEGWT 228
           PS+ +                  K  V  +       L  A+  L P  N  + G     
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDG----- 157

Query: 229 SALAEVPPIIGNSSSGSLSAQTGSGTTLSGPPSVMAGLNMAEALAQAPSRARTAPQ---L 285
                                 GSG       + +A     +       + +   +   L
Sbjct: 158 --------------------VLGSGK------TWVA----LDVCLSYKVQCKMDFKIFWL 187

Query: 286 SVKTQRLDELTIKKSKQLIPVTPSMPKSSVLNFSDKSKPKTAVRISDMSMAVKNGQQQPA 345
           ++K     E  ++  ++L+      P  +  +    +     +RI  +   ++   +   
Sbjct: 188 NLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSK- 241

Query: 346 PLHHANQSLHVGNVKTDVPKTSHGKLLVLKPAWENGVSHSPK-----DGASPTNNANSRA 400
           P  +                     LLVL          + K     + +          
Sbjct: 242 PYENC--------------------LLVLLNVQ------NAKAWNAFNLSCKI-----LL 270

Query: 401 TTSQSTAVPSVASATPRSPNNPKLPSGERKATALNPISGFSAERRPSLSQTQSRNDFFNL 460
           TT        V            L +      +L+           +L+  + +    +L
Sbjct: 271 TTRFK----QVTDF---------LSAATTTHISLD-------HHSMTLTPDEVK----SL 306

Query: 461 LKKKTSMNTSGLPADSGTDIP---SPAGEKHGEVTKDVISAPSSPHVIENGAQVTINGGT 517
           L K        LP +  T  P   S   E      +D           +N   V  +   
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAES----IRD------GLATWDNWKHVNCD--K 354

Query: 518 HKETQRFSGAGEKTMSRYAAVDPDEEAAFLRSLG----------------WEENSGEDEG 561
                  S            ++P E       L                 W +       
Sbjct: 355 LTTIIESS---------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD------- 398

Query: 562 LTEEEIKAFYQEFEKRGMQLK 582
           + + ++     +  K  +  K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEK 419


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00