Citrus Sinensis ID: 007363

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600------
MSSWSETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGRNEEPKNSEAPNSHIDANAQGTPESSNQLPSLIPVRVIIHGHPPKTNTKKDETSGKLIHLPESIEDLFKLAGMSVARCT
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHccEEEEEcccccccEEEHHHHHHHHHHHHHHccccEEEEEcccEEEEEcHHHHHHHccccccHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccEEEEccccEEEEccccccEEEEEEEcEEEEEEEccccEEEEEEEccccEEEccccccccccccEEEEcccEEEEEEcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEccccHHHHHHHHcccccccc
ccccHHccccccHHHHcccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHEEEEHEHHHHccccEEEEccHHHHHHHHHHccEEHEEHHHHccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccEEEEEccccccEEEEEEcEEEEEEEccccEEEEEEEccccEEEEEEEEcccccccEEEEccHHHHHEccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHccHcccHHHHHccccccccccccHHHHcccccccccccccccccccccEEEEEcccccccccccccccEEEEccccHHHHHHHHHHHccccc
msswsetrsplpllfrrhssgeiknLASVSSsllpafgtvvdeGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLdkstyllvDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTgqlhdgrvfGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAhhkipentwigsqvndfkhrsiWLGYTYSIYWSIVTLTtvgygdlhavntGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRygsknrlpegLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMkaeyfppkveiilqneiptdlyIVVSGAVDVLIYKNGAEQFLTKlgsadmageigvifnipqpftvRTKRLSQVIRLSHHHlkqmvpidhgdgkKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIeitgrneepknseapnshidanaqgtpessnqlpslipvrviihghppktntkkdetsgklihlpESIEDLFKLAgmsvarct
msswsetrsplpllFRRHSSGEIKNLAsvsssllpafgtvvdeghlRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGElftrlekdirfTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILrygsknrlpEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKqmvpidhgdgKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGRneepknseapnSHIDANAQGTPESSNQLPSLIPVRVIIHGHppktntkkdetsgKLIHLPESIEDLFKLAGMSVARCT
MSSWSETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLvvdfffaadiiftffvaYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFlnllrlwrlrrVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGRNEEPKNSEAPNSHIDANAQGTPESSNQLPSLIPVRVIIHGHPPKTNTKKDETSGKLIHLPESIEDLFKLAGMSVARCT
***************************SVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQ**EVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEI*********************************LIPVRVIIH************************EDLFKL*********
**************************************************YVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFI***********************************************************************************************DLFKLAGMSVA***
*********PLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGR**********NSHIDANAQGTPESSNQLPSLIPVRVIIHGHPPK********SGKLIHLPESIEDLFKLAGMSVARCT
******************************SSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEIT********************************LIPVRVIIHGHPPK******ETSGKLIHLPESIEDLFKLAGMSVARCT
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSSWSETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGRNEEPKNSEAPNSHIDANAQGTPESSNQLPSLIPVRVIIHGHPPKTNTKKDETSGKLIHLPESIEDLFKLAGMSVARCT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query606 2.2.26 [Sep-21-2011]
P92960662 Potassium channel KAT3 OS yes no 0.990 0.906 0.602 0.0
Q0JKV1 935 Potassium channel AKT1 OS yes no 0.780 0.505 0.558 1e-155
P0C550 935 Potassium channel AKT1 OS N/A no 0.780 0.505 0.558 1e-155
A2ZX97593 Potassium channel KAT6 OS no no 0.914 0.934 0.496 1e-153
Q652U9591 Potassium channel KAT4 OS no no 0.915 0.939 0.492 1e-152
Q38998 857 Potassium channel AKT1 OS no no 0.813 0.575 0.511 1e-148
Q6K3T2 718 Potassium channel KAT1 OS no no 0.788 0.665 0.520 1e-145
Q39128677 Potassium channel KAT1 OS no no 0.938 0.840 0.430 1e-142
Q8H569 907 Potassium channel AKT3 OS no no 0.805 0.538 0.51 1e-139
Q5JM04502 Potassium channel KAT3 OS no no 0.788 0.952 0.494 1e-137
>sp|P92960|KAT3_ARATH Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/611 (60%), Positives = 463/611 (75%), Gaps = 11/611 (1%)

Query: 2   SSWSETRSPLPLL-FRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRY 60
           +S +E RSPL +L FRR SS +++N+ SVSSSLLPAFGT +++ +   K +++  +D RY
Sbjct: 27  ASTAEARSPLSILQFRRRSSKDVRNITSVSSSLLPAFGTFIEDDNPSSKPFIVLHFDRRY 86

Query: 61  RWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKST 120
           R W+ FLV+LV YSAWAS FELAF KAA G+LL +DLVVDFFFA DII TFFV+YLD +T
Sbjct: 87  RLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTT 146

Query: 121 YLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRR 180
           YL V DHK IA RY+  + F MDVASTLP QFIY+  TG +  G+ FGFLNLLRLWRLRR
Sbjct: 147 YLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFLNLLRLWRLRR 206

Query: 181 VGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVND 240
           V ELF RLEKD  F YF+ R+ KL+CVT+F +H AGC  +++A H+  P +TWIGSQV D
Sbjct: 207 VAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPTDTWIGSQVED 266

Query: 241 FKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
           FK RS+WLGYTYS+YWSIVTLTTVGYGDLHAVN+ EK FNM YMLFNIGLT+YIIG MTN
Sbjct: 267 FKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMFYMLFNIGLTSYIIGIMTN 326

Query: 301 LIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360
           L+VH A+RT  MR+AIN+ILRY SKNRLP+ +REQMLAHMQL+FKTAEL+QEEVL+DLPK
Sbjct: 327 LVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQLKFKTAELRQEEVLQDLPK 386

Query: 361 AIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIV 420
           AIRSSI+QHLFR  +E+ YLF+G    L+ Q+VS+++AEYFPPK+EIILQNEIPTD Y++
Sbjct: 387 AIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLVSQIQAEYFPPKMEIILQNEIPTDFYVI 446

Query: 421 VSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQ 480
           VSG VD++  K  +EQ L KLG   MAGEIGV+FNIPQPFTVRT+RLSQVIR+ HH  K+
Sbjct: 447 VSGGVDIIASKGVSEQVLAKLGPGSMAGEIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKE 506

Query: 481 MVPIDHG-DGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGRNEEPKNSEAPN 539
           MV  D+  D K I+ NF+ Y+KGL  E+  E+PFL +LL D + ++    E  ++ E P 
Sbjct: 507 MVQSDNDVDAKMIIANFMTYLKGLNDELKKEIPFLRDLLDDADAQV---QETVQSEETPQ 563

Query: 540 SHIDANAQGTPESSNQLPSL----IPVRVIIHGHPP--KTNTKKDETSGKLIHLPESIED 593
           S+ +     +   + Q+       +P RVIIHG  P  + N    +++G+LI LP+SI+ 
Sbjct: 564 SNDEEIVTVSRHENGQIEERRREGVPKRVIIHGQAPPNQDNKNNGDSNGRLIILPDSIQL 623

Query: 594 LFKLAGMSVAR 604
           LF LA   + +
Sbjct: 624 LFDLAEKKLGK 634
Probable modulatory (alpha) subunit of inward-rectifying potassium channels. Could mediate potassium uptake from the soil solution by plant roots in association with AKT1.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1 Back     alignment and function description
>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZX97|KAT6_ORYSJ Potassium channel KAT6 OS=Oryza sativa subsp. japonica GN=Os01g0718700 PE=3 SV=1 Back     alignment and function description
>sp|Q652U9|KAT4_ORYSJ Potassium channel KAT4 OS=Oryza sativa subsp. japonica GN=Os06g0254200 PE=3 SV=2 Back     alignment and function description
>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2 Back     alignment and function description
>sp|Q6K3T2|KAT1_ORYSJ Potassium channel KAT1 OS=Oryza sativa subsp. japonica GN=Os02g0245800 PE=2 SV=1 Back     alignment and function description
>sp|Q39128|KAT1_ARATH Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2 Back     alignment and function description
>sp|Q8H569|AKT3_ORYSJ Potassium channel AKT3 OS=Oryza sativa subsp. japonica GN=Os07g0175400 PE=3 SV=1 Back     alignment and function description
>sp|Q5JM04|KAT3_ORYSJ Potassium channel KAT3 OS=Oryza sativa subsp. japonica GN=Os01g0756700 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query606
359476400631 PREDICTED: potassium channel KAT3-like [ 0.978 0.939 0.760 0.0
224141813633 predicted protein [Populus trichocarpa] 0.981 0.939 0.765 0.0
449437364632 PREDICTED: potassium channel KAT3-like [ 0.978 0.938 0.725 0.0
255551096629 Potassium channel KAT3, putative [Ricinu 0.978 0.942 0.759 0.0
449503568639 PREDICTED: potassium channel KAT3-like [ 0.978 0.928 0.718 0.0
6562375629 potassium channel [Daucus carota] 0.976 0.941 0.719 0.0
56744191639 potassium channel NtKC1 [Nicotiana tabac 0.968 0.918 0.691 0.0
224089080586 predicted protein [Populus trichocarpa] 0.904 0.935 0.717 0.0
297591948641 potassium channel protein NKT5 [Nicotian 0.966 0.914 0.689 0.0
357466431624 Potassium channel [Medicago truncatula] 0.968 0.940 0.685 0.0
>gi|359476400|ref|XP_003631831.1| PREDICTED: potassium channel KAT3-like [Vitis vinifera] gi|296081948|emb|CBI20953.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/596 (76%), Positives = 516/596 (86%), Gaps = 3/596 (0%)

Query: 5   SETRSPLPLLFRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQ 64
           SETRSPLPLL RRH+S E KNLA+VSSSLLPAFGTV+DEG+L+LKKY IAPYD RYRWWQ
Sbjct: 3   SETRSPLPLLLRRHTSSESKNLATVSSSLLPAFGTVIDEGYLQLKKYTIAPYDRRYRWWQ 62

Query: 65  TFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLV 124
           TFLV+LV+YSAWASPFELAF+K ATGSL+ VDL VD FFAADII TFFVAYLDKSTYLLV
Sbjct: 63  TFLVILVIYSAWASPFELAFKKVATGSLMPVDLTVDAFFAADIILTFFVAYLDKSTYLLV 122

Query: 125 DDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGEL 184
           DDHKKIA+RY T+LW  MD+ASTLPFQ +YR+ TG++H G +FGFLNLLRLWRLRRV EL
Sbjct: 123 DDHKKIAIRYATKLWLPMDIASTLPFQSMYRVITGKMHQGDIFGFLNLLRLWRLRRVSEL 182

Query: 185 FTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHR 244
           FTRLEKD RF+YF TR  KLICVTLFAVHSAGCFY++LA HHK  + TWIG+Q+ DF+HR
Sbjct: 183 FTRLEKDTRFSYFWTRYCKLICVTLFAVHSAGCFYYWLAIHHKTSKKTWIGAQITDFEHR 242

Query: 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304
           SIWLGYTYSIYWSIVTLTTVGYGDLHA NTGEKVFN+LYMLFNIGLTAY+IGNMTNLIVH
Sbjct: 243 SIWLGYTYSIYWSIVTLTTVGYGDLHAENTGEKVFNILYMLFNIGLTAYLIGNMTNLIVH 302

Query: 305 SAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRS 364
           SA+RT  MR+AINEILRY SKNRLPEGL+EQMLAHMQL+FKTAELQQEEVLEDLPKAIRS
Sbjct: 303 SAIRTFAMRDAINEILRYASKNRLPEGLKEQMLAHMQLKFKTAELQQEEVLEDLPKAIRS 362

Query: 365 SISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGA 424
           SI+QHLF  TVEK YLF+G+S DL+ Q+VSE+KAEYFPPKV+IILQNEIPTD YI+ +GA
Sbjct: 363 SIAQHLFHKTVEKAYLFKGISDDLVTQLVSEIKAEYFPPKVDIILQNEIPTDFYIIAAGA 422

Query: 425 VDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPI 484
           +DVLIYKNG EQFLTK G A+MAGEIGVIFNIPQPFTVRTKRLSQVIR+SHHH KQ+V  
Sbjct: 423 MDVLIYKNGTEQFLTKQGPAEMAGEIGVIFNIPQPFTVRTKRLSQVIRISHHHFKQIVQQ 482

Query: 485 DHGDGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEITGRNEEPKNSEAPNSHIDA 544
            + DGK I+ NF+QY++ LKQE+  E+PFLTELL D+NIE    ++EP+N+E   S  D 
Sbjct: 483 QNEDGKTIILNFVQYLRSLKQELQQEIPFLTELLGDMNIEHVESSQEPQNTETLRSDNDE 542

Query: 545 NA--QGTPESSNQLPSLIPVRVIIHGHPPKTNTKKDETSGKLIHLPESIEDLFKLA 598
            A  +GTP +S  L S +P+RV+IHGH P  NT    T GK+IHL +SIEDL +LA
Sbjct: 543 GAHIEGTP-TSYPLSSTLPMRVVIHGHHPNENTTDSSTMGKVIHLTDSIEDLLELA 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224141813|ref|XP_002324257.1| predicted protein [Populus trichocarpa] gi|222865691|gb|EEF02822.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437364|ref|XP_004136462.1| PREDICTED: potassium channel KAT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551096|ref|XP_002516596.1| Potassium channel KAT3, putative [Ricinus communis] gi|223544416|gb|EEF45937.1| Potassium channel KAT3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449503568|ref|XP_004162067.1| PREDICTED: potassium channel KAT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|6562375|emb|CAB62555.1| potassium channel [Daucus carota] Back     alignment and taxonomy information
>gi|56744191|dbj|BAD81035.1| potassium channel NtKC1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224089080|ref|XP_002308628.1| predicted protein [Populus trichocarpa] gi|222854604|gb|EEE92151.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297591948|gb|ACJ05642.2| potassium channel protein NKT5 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357466431|ref|XP_003603500.1| Potassium channel [Medicago truncatula] gi|355492548|gb|AES73751.1| Potassium channel [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query606
TAIR|locus:2005524662 KAT3 "AT4G32650" [Arabidopsis 0.981 0.898 0.571 7.8e-183
TAIR|locus:2043839 857 KT1 "AT2G26650" [Arabidopsis t 0.813 0.575 0.474 1.7e-124
TAIR|locus:2170468677 KAT1 "potassium channel in Ara 0.797 0.713 0.459 4.6e-120
TAIR|locus:2005531697 KAT2 "potassium channel in Ara 0.795 0.691 0.460 3.3e-117
TAIR|locus:2127866 880 KT5 "K+ transporter 5" [Arabid 0.801 0.552 0.446 8.2e-116
TAIR|locus:2132065 802 KT2/3 "potassium transport 2/3 0.800 0.604 0.427 5.7e-107
TAIR|locus:2075442 828 SKOR "STELAR K+ outward rectif 0.726 0.531 0.337 2.9e-72
TAIR|locus:2169866 820 GORK "gated outwardly-rectifyi 0.775 0.573 0.335 2.9e-70
UNIPROTKB|F1MBN0663 CNGA2 "Cyclic nucleotide-gated 0.762 0.696 0.24 4.9e-28
UNIPROTKB|Q03041663 CNGA2 "Cyclic nucleotide-gated 0.762 0.696 0.24 4.9e-28
TAIR|locus:2005524 KAT3 "AT4G32650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1743 (618.6 bits), Expect = 7.8e-183, Sum P(2) = 7.8e-183
 Identities = 345/604 (57%), Positives = 440/604 (72%)

Query:     2 SSWSETRSPLPLL-FRRHSSGEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRY 60
             +S +E RSPL +L FRR SS +++N+ SVSSSLLPAFGT +++ +   K +++  +D RY
Sbjct:    27 ASTAEARSPLSILQFRRRSSKDVRNITSVSSSLLPAFGTFIEDDNPSSKPFIVLHFDRRY 86

Query:    61 RWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLXXXXXXXXXXXXXXXXXYLDKST 120
             R W+ FLV+LV YSAWAS FELAF KAA G+LL +DL                 YLD +T
Sbjct:    87 RLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTT 146

Query:   121 YLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFXXXXXXXXXXX 180
             YL V DHK IA RY+  + F MDVASTLP QFIY+  TG +  G+ FGF           
Sbjct:   147 YLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFLNLLRLWRLRR 206

Query:   181 VGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVND 240
             V ELF RLEKD  F YF+ R+ KL+CVT+F +H AGC  +++A H+  P +TWIGSQV D
Sbjct:   207 VAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPTDTWIGSQVED 266

Query:   241 FKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
             FK RS+WLGYTYS+YWSIVTLTTVGYGDLHAVN+ EK FNM YMLFNIGLT+YIIG MTN
Sbjct:   267 FKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMFYMLFNIGLTSYIIGIMTN 326

Query:   301 LIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360
             L+VH A+RT  MR+AIN+ILRY SKNRLP+ +REQMLAHMQL+FKTAEL+QEEVL+DLPK
Sbjct:   327 LVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQLKFKTAELRQEEVLQDLPK 386

Query:   361 AIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIV 420
             AIRSSI+QHLFR  +E+ YLF+G    L+ Q+VS+++AEYFPPK+EIILQNEIPTD Y++
Sbjct:   387 AIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLVSQIQAEYFPPKMEIILQNEIPTDFYVI 446

Query:   421 VSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQ 480
             VSG VD++  K  +EQ L KLG   MAGEIGV+FNIPQPFTVRT+RLSQVIR+ HH  K+
Sbjct:   447 VSGGVDIIASKGVSEQVLAKLGPGSMAGEIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKE 506

Query:   481 MVPIDHG-DGKKIMNNFIQYVKGLKQEMLDELPFLTELLSDLNIEI--TGRNEE-PKNSE 536
             MV  D+  D K I+ NF+ Y+KGL  E+  E+PFL +LL D + ++  T ++EE P++++
Sbjct:   507 MVQSDNDVDAKMIIANFMTYLKGLNDELKKEIPFLRDLLDDADAQVQETVQSEETPQSND 566

Query:   537 APNSHIDANAQGTPESSNQLPSLIPVRVIIHGH-PPKTNTKKD-ETSGKLIHLPESIEDL 594
                  +  +  G  E   +    +P RVIIHG  PP  + K + +++G+LI LP+SI+ L
Sbjct:   567 EEIVTVSRHENGQIEERRR--EGVPKRVIIHGQAPPNQDNKNNGDSNGRLIILPDSIQLL 624

Query:   595 FKLA 598
             F LA
Sbjct:   625 FDLA 628
GO:0005242 "inward rectifier potassium channel activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISS;IDA
GO:0006811 "ion transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009624 "response to nematode" evidence=IEP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0010163 "high-affinity potassium ion import" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBN0 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q03041 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P92960KAT3_ARATHNo assigned EC number0.60220.99000.9063yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query606
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 0.0
pfam00520194 pfam00520, Ion_trans, Ion transport protein 9e-23
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 2e-20
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 2e-17
pfam0788574 pfam07885, Ion_trans_2, Ion channel 4e-11
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 1e-10
COG0664214 COG0664, Crp, cAMP-binding proteins - catabolite g 1e-08
pfam1183469 pfam11834, DUF3354, Domain of unknown function (DU 1e-07
PRK11753211 PRK11753, PRK11753, DNA-binding transcriptional du 7e-05
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information 
 Score =  562 bits (1449), Expect = 0.0
 Identities = 242/491 (49%), Positives = 331/491 (67%), Gaps = 3/491 (0%)

Query: 25  NLASVSSSLLPAFG-TVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELA 83
           +L ++S  +LP  G    ++ H+    ++I+P D RYRWW+T +VVLV YSAW  PFE+A
Sbjct: 25  SLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVA 84

Query: 84  FRKAA-TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTM 142
           F  A+    L I D VVD FFA DI+ TFFVAY+D  T LLV D KKIA+RY++  WF M
Sbjct: 85  FLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLM 143

Query: 143 DVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLS 202
           DVAST+PFQ +  + TG +     +  L LLR WRLRRV +LFTRLEKDIRF+YF  R +
Sbjct: 144 DVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCA 203

Query: 203 KLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLT 262
           +L+ VTLF VH AGC Y+ +A  +     TWIG+ + +F+  S+W+ Y  +IYWSI T+T
Sbjct: 204 RLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMT 263

Query: 263 TVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRY 322
           TVGYGDLHAVNT E +F + YMLFN+GLTAY+IGNMTNL+V    RT+  RN+I     +
Sbjct: 264 TVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNF 323

Query: 323 GSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQ 382
             +NRLP  L++Q+LA+M LRFK   L Q+++++ LPK+I  SI QHLF   VEK YLF+
Sbjct: 324 VGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFK 383

Query: 383 GVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLG 442
           GVS +++  +V++MKAEY PP+ ++I+QNE P D+YIVVSG V+++  +   E+ +  LG
Sbjct: 384 GVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLG 443

Query: 443 SADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKG 502
             D+ GE+G +   PQ FT RTK LSQ++RL    L + +     D   I+ NF+Q+ K 
Sbjct: 444 CGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503

Query: 503 LKQEMLDELPF 513
           L    + +L  
Sbjct: 504 LHDLNVGDLLG 514

Length = 823
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|221253 pfam11834, DUF3354, Domain of unknown function (DUF3354) Back     alignment and domain information
>gnl|CDD|236969 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 606
KOG0498727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.92
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.86
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.8
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.69
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.62
cd00038115 CAP_ED effector domain of the CAP family of transc 99.58
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.58
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 99.55
COG2905 610 Predicted signal-transduction protein containing c 99.55
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.54
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.54
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.54
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.54
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.5
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.5
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.5
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 99.44
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.42
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.39
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.38
PLN02868 413 acyl-CoA thioesterase family protein 99.37
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.33
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.29
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.23
PRK10537393 voltage-gated potassium channel; Provisional 98.88
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 98.66
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 98.59
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 98.49
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.49
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 98.26
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 98.18
PF1183469 DUF3354: Domain of unknown function (DUF3354); Int 97.95
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 97.94
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.88
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.85
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 97.54
PF04831153 Popeye: Popeye protein conserved region; InterPro: 97.51
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 97.5
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 97.39
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 97.24
PLN032231634 Polycystin cation channel protein; Provisional 97.23
KOG2301 1592 consensus Voltage-gated Ca2+ channels, alpha1 subu 96.91
KOG23011592 consensus Voltage-gated Ca2+ channels, alpha1 subu 96.84
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 96.19
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 95.88
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 95.88
PF00520200 Ion_trans: Ion transport protein calcium channel s 93.48
KOG36141381 consensus Ca2+/Mg2+-permeable cation channels (LTR 93.34
KOG3676782 consensus Ca2+-permeable cation channel OSM-9 and 90.79
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 90.53
TIGR00870743 trp transient-receptor-potential calcium channel p 89.4
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 89.37
COG4709195 Predicted membrane protein [Function unknown] 86.63
KOG0498 727 consensus K+-channel ERG and related proteins, con 85.1
PLN032231634 Polycystin cation channel protein; Provisional 84.71
PLN03192823 Voltage-dependent potassium channel; Provisional 83.61
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 82.42
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-82  Score=674.80  Aligned_cols=459  Identities=37%  Similarity=0.637  Sum_probs=419.8

Q ss_pred             ccccccCceEEcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecC----------CCccchhhhHHHHHHHHhhheeeeE
Q 007363           43 EGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKA----------ATGSLLIVDLVVDFFFAADIIFTFF  112 (606)
Q Consensus        43 ~~~~~~~~~ii~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~~f~~Di~l~f~  112 (606)
                      ++..+...++++|+|++++.||.+++++++|++++.|++++|...          ....+.++|.++|++|++||+++|+
T Consensus        60 ~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Fr  139 (727)
T KOG0498|consen   60 ERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFR  139 (727)
T ss_pred             cccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhhe
Confidence            344566778999999999999999999999999999999999766          4577899999999999999999999


Q ss_pred             EEEEeCCCcEEEecHhHHHHHhhccccccccccccchHHHHHHHhcC-----ccCCCceechhhhhhhhHHHhHHHHHHH
Q 007363          113 VAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTG-----QLHDGRVFGFLNLLRLWRLRRVGELFTR  187 (606)
Q Consensus       113 t~y~~~~~g~~i~~~~~i~~~Yl~~~~f~iDlls~iP~~~~~~~~~~-----~~~~~~~~~~l~llrllRl~r~~~~~~~  187 (606)
                      |+|.++.+.++|.||++|++||+++ ||++|++|++|++.++.+...     .........++.+.|++|+.|+.+++.+
T Consensus       140 tayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r  218 (727)
T KOG0498|consen  140 TAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFAR  218 (727)
T ss_pred             EEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888999999999999999 999999999999988765332     1111145678899999999999999999


Q ss_pred             hHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCC-ceeccc-----cCC----cccCcchhhhhhH
Q 007363          188 LEKDIRFTY--FITRLSKLICVTLFAVHSAGCFYFYLAAHHK--IPEN-TWIGSQ-----VND----FKHRSIWLGYTYS  253 (606)
Q Consensus       188 l~~~~~~~~--~~~~~~~l~~~~~~~~h~~ac~~~~i~~~~~--~~~~-~W~~~~-----~~~----~~~~~~~~~Y~~s  253 (606)
                      +++...+++  .|..+.++++.+++.+||+||+||+++....  +..+ +|+...     ..+    +...+++.+|++|
T Consensus       219 ~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~a  298 (727)
T KOG0498|consen  219 LEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYA  298 (727)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHH
Confidence            999888766  4455779999999999999999999998665  5555 898852     233    6677889999999


Q ss_pred             hHhhhhhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHH
Q 007363          254 IYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLR  333 (606)
Q Consensus       254 ly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~  333 (606)
                      +||+++||||+|||+.+|.|..|++|+|++|++|.++||++||+|++++++.+.+..+|+.++.++.+||+++++|++||
T Consensus       299 Lyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LR  378 (727)
T KOG0498|consen  299 LYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLR  378 (727)
T ss_pred             HHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh-cccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCC
Q 007363          334 EQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNE  412 (606)
Q Consensus       334 ~rv~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~  412 (606)
                      +||++|++|+|+.. +.+++++|++||+.||+||+.|+|.++++++|+|+++|++++.+||..++.+.|+|||+|++|||
T Consensus       379 qRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd  458 (727)
T KOG0498|consen  379 QRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGD  458 (727)
T ss_pred             HHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCC
Confidence            99999999999995 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEe-ccccccC-CCcccEEEEcccEEEEEeCHHHHHhhhccChhhHH
Q 007363          413 IPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAG-EIGVIFN-IPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGK  490 (606)
Q Consensus       413 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG-e~~~l~~-~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~  490 (606)
                      +.++||||.+|.+++....+|.+.+...+++||+|| |+..... .|.++||+|++.|+++.|++++|..+++.+|.+..
T Consensus       459 ~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~  538 (727)
T KOG0498|consen  459 PVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGS  538 (727)
T ss_pred             ccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHH
Confidence            999999999999999997778788899999999999 8888877 89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 007363          491 KIMNNFIQYVKG  502 (606)
Q Consensus       491 ~~~~~~~~~l~~  502 (606)
                      +++++....+..
T Consensus       539 ~~l~~~~r~~s~  550 (727)
T KOG0498|consen  539 KFLQHTFRYYSH  550 (727)
T ss_pred             HHHHhHHHHhhh
Confidence            999955444433

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query606
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 9e-08
3r6s_A247 Crystal Structure Of Glxr Transcription Factor From 4e-05
3mzh_A225 Crystal Structure Of Camp Receptor Protein From Myc 5e-05
3i54_A249 Crystal Structure Of Mtbcrp In Complex With Camp Le 5e-05
3d0s_A227 Camp Receptor Protein From M.Tuberculosis, Camp-Fre 5e-05
1i6x_A209 Structure Of A Star Mutant Crp-Camp At 2.2 A Length 5e-05
3h3u_A224 Crystal Structure Of Crp (Camp Receptor Protein) Fr 6e-05
1hw5_A210 The CapCRP VARIANT T127LS128A Length = 210 1e-04
3i59_A249 Crystal Structure Of Mtbcrp In Complex With N6-Camp 1e-04
1o3q_A200 Protein-Dna Recognition And Dna Deformation Reveale 1e-04
1o3s_A200 Protein-Dna Recognition And Dna Deformation Reveale 1e-04
3fwe_A210 Crystal Structure Of The Apo D138l Cap Mutant Lengt 1e-04
1ruo_A209 Catabolite Gene Activator Protein (Cap) MutantDNA C 1e-04
1run_A209 Catabolite Gene Activator Protein (Cap)DNA COMPLEX 1e-04
2cgp_A210 Catabolite Gene Activator ProteinDNA COMPLEX, ADENO 1e-04
1cgp_A205 Catabolite Gene Activator Protein (Cap)DNA COMPLEX 1e-04
3kcc_A260 Crystal Structure Of D138l Mutant Of Catabolite Gen 2e-04
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 2e-04
4h33_A137 Crystal Structure Of A Voltage-gated K+ Channel Por 4e-04
3qop_A210 Domain-Domain Flexibility Leads To Allostery Within 4e-04
3ouf_A97 Structure Of A K+ Selective Nak Mutant Length = 97 6e-04
4din_B381 Novel Localization And Quaternary Structure Of The 7e-04
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure 
Iteration: 1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 76/170 (44%), Gaps = 3/170 (1%)
Query: 313 RNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFR 372
           R  + ++  Y    +LP  LR ++L + + R++     +  +  ++ ++IR  ++ +  R
Sbjct: 11  REKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCR 70
Query: 373 GTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKN 432
             V     F G   + + ++V+ ++ E F P   +I +      ++ +  G VD+ I  +
Sbjct: 71  DLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDI-IMSD 129
Query: 433 GAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMV 482
           G     T L      GEI ++    +  +V+ +    +  LS  H  Q++
Sbjct: 130 GV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From Corynebacterium Glutamicum With Camp Length = 247 Back     alignment and structure
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From Mycobacterium Tuberculosis In Complex With Camp And Its Dna Binding Element Length = 225 Back     alignment and structure
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp Length = 249 Back     alignment and structure
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form Length = 227 Back     alignment and structure
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A Length = 209 Back     alignment and structure
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From Mycoba Tuberculosis Length = 224 Back     alignment and structure
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A Length = 210 Back     alignment and structure
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp Length = 249 Back     alignment and structure
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In Crystal Structures Of Cap-Dna Complexes Length = 200 Back     alignment and structure
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In Crystal Structures Of Cap-Dna Complexes Length = 200 Back     alignment and structure
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant Length = 210 Back     alignment and structure
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX + Adenosine-3',5'-Cyclic-Monophosphate Length = 209 Back     alignment and structure
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX + Adenosine-3',5'-Cyclic-Monophosphate Length = 209 Back     alignment and structure
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX, ADENOSINE-3', 5'-Cyclic-Monophosphate Length = 210 Back     alignment and structure
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX + Adenosine-3',5'-Cyclic-Monophosphate Length = 205 Back     alignment and structure
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene Activator Protein Length = 260 Back     alignment and structure
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137 Back     alignment and structure
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The Camp Receptor Protein (Crp) Length = 210 Back     alignment and structure
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97 Back     alignment and structure
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri Beta Holoenzyme Length = 381 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query606
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 3e-29
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 5e-28
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 3e-26
3ukn_A212 Novel protein similar to vertebrate potassium VOL 3e-23
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 1e-16
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 2e-15
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 2e-15
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 7e-14
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 8e-11
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 1e-13
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 2e-13
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 3e-13
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 1e-12
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-12
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 2e-11
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-12
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 9e-12
2pqq_A149 Putative transcriptional regulator; APC7345, strep 4e-12
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 6e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 7e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 9e-12
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 1e-11
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 5e-11
3ouf_A97 Potassium channel protein; ION channel, membrane, 3e-11
2q67_A114 Potassium channel protein; inverted teepee, helix 5e-11
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 5e-11
1lnq_A336 MTHK channels, potassium channel related protein; 6e-11
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 6e-11
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 7e-11
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 1e-10
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 2e-10
4ava_A333 Lysine acetyltransferase; allosteric regulation, d 4e-10
2a9h_A155 Voltage-gated potassium channel; potassium channel 9e-10
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 1e-09
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 2e-09
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 3e-09
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 3e-09
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 4e-09
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 5e-09
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 6e-09
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 1e-08
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 1e-08
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 6e-08
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 2e-08
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 2e-08
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 2e-08
1xl4_A301 Inward rectifier potassium channel; integral membr 3e-08
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 3e-08
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 7e-08
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 2e-07
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 2e-07
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1p7b_A333 Integral membrane channel and cytosolic domains; t 4e-06
3ukm_A280 Potassium channel subfamily K member 1; membrane p 4e-06
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 7e-06
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 2e-05
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 3e-05
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 5e-05
3sya_A340 G protein-activated inward rectifier potassium CH; 6e-05
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 8e-05
1ft9_A222 Carbon monoxide oxidation system transcription reg 9e-05
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 9e-05
3b02_A195 Transcriptional regulator, CRP family; structural 8e-04
3um7_A309 Potassium channel subfamily K member 4; potassium 8e-04
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
 Score =  113 bits (286), Expect = 3e-29
 Identities = 33/169 (19%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 312 MRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLF 371
            R  + ++  Y    +LP  LR ++L + + R++     +  +  ++ ++IR  ++ +  
Sbjct: 10  YREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC 69

Query: 372 RGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYK 431
           R  V     F G   + + ++V+ ++ E F P   +I +      ++ +  G VD+++  
Sbjct: 70  RDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-S 128

Query: 432 NGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQ 480
           +G     T L      GEI ++    +  +V+ +    +  LS  H  Q
Sbjct: 129 DGVI--ATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQ 175
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query606
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 100.0
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 100.0
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 100.0
3ukn_A212 Novel protein similar to vertebrate potassium VOL 100.0
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.94
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.9
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.87
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.82
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.81
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.81
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.81
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.8
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.8
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.78
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.78
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.77
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.76
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.76
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.76
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.76
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.76
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.75
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.74
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.74
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.73
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.73
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.73
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.72
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.72
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.72
4ava_A333 Lysine acetyltransferase; allosteric regulation, d 99.71
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.71
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.7
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.69
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.68
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.68
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.68
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.67
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.66
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.66
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.66
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.66
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.65
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.65
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.65
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.64
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.64
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.64
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.63
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.62
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.61
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.6
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.57
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.57
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.57
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.55
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.55
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.49
2q67_A114 Potassium channel protein; inverted teepee, helix 99.48
3b02_A195 Transcriptional regulator, CRP family; structural 99.46
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.43
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.42
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.4
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.37
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.36
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 99.28
1xl4_A301 Inward rectifier potassium channel; integral membr 99.19
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.13
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.09
3um7_A309 Potassium channel subfamily K member 4; potassium 99.08
3um7_A309 Potassium channel subfamily K member 4; potassium 98.96
3sya_A340 G protein-activated inward rectifier potassium CH; 98.92
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.88
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.86
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.86
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.78
1ors_C132 Potassium channel; voltage-dependent, voltage sens 98.66
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 98.66
1lnq_A336 MTHK channels, potassium channel related protein; 98.52
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 87.17
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=100.00  E-value=6.8e-43  Score=360.24  Aligned_cols=348  Identities=15%  Similarity=0.178  Sum_probs=143.7

Q ss_pred             EcCCChhHHhHHHHHHHHHHHHHhhcceeeeeecCC--CccchhhhHHHHHHHHhhheeeeEEEEEeCCCcEEEecHhHH
Q 007363           53 IAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKI  130 (606)
Q Consensus        53 i~P~s~~~~~W~~~~~~l~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~g~~i~~~~~i  130 (606)
                      +.|+|+.   ++.+++++++.+++++..+.......  ...+..++.++.++|++|+++++..+   +.           
T Consensus         3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~-----------   65 (355)
T 3beh_A            3 VLPFLRI---YAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RA-----------   65 (355)
T ss_dssp             ----CCS---SSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-----------
T ss_pred             CCchhHH---HHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-----------
Confidence            4677775   46666666666666666553222111  12244556666667899999998532   11           


Q ss_pred             HHHhhcccccccccccc-chHHHHHHHhcCccCCCceechhhhhhhhHHHhHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Q 007363          131 ALRYVTRLWFTMDVAST-LPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTL  209 (606)
Q Consensus       131 ~~~Yl~~~~f~iDlls~-iP~~~~~~~~~~~~~~~~~~~~l~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  209 (606)
                      ...|.+++|+++|++++ +|+....  .. ..   ...+++|++|++|+.|..+.++.+......  ....+..++..++
T Consensus        66 ~~~~~~~~~~i~Dl~~i~~p~~~~~--~~-~~---~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~--~~~~l~~~~~~~~  137 (355)
T 3beh_A           66 GVVRDRTPKIAIDVLAVLVPLAAFL--LD-GS---PDWSLYCAVWLLKPLRDSTFFPVLGRVLAN--EARNLIGVTTLFG  137 (355)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHH--SC-CS---GGGGGGGGGGGSHHHHTCSSHHHHHHHHHH--THHHHHHHHHHHH
T ss_pred             cceeccCcchHHHHHHHHHHHHHHH--hc-cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            13577778999999999 6886543  11 11   334455555555555544334433333221  1245666777778


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCceeccccCCcccCcchhhhhhHhHhhhhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 007363          210 FAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIG  289 (606)
Q Consensus       210 ~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~tlttvGyGdi~p~t~~e~i~~i~~~i~g~~  289 (606)
                      +++|++||++|.++..                .+.+.+.+|.+|+||+++|||||||||++|.|+.++++++++|++|++
T Consensus       138 ~~~~~~a~~~~~~e~~----------------~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~  201 (355)
T 3beh_A          138 VVLFAVALAAYVIERD----------------IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIG  201 (355)
T ss_dssp             HHHHHHHHHHHHHHTT----------------TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcC----------------CCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHH
Confidence            8899999999988731                112335679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhcccHHHHHhhCCHHHHHHHHHH
Q 007363          290 LTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQH  369 (606)
Q Consensus       290 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~  369 (606)
                      ++++++|.+++.+.+..++                            +++.                             
T Consensus       202 ~~~~~~~~i~~~~~~~~~~----------------------------~~~~-----------------------------  224 (355)
T 3beh_A          202 IFGLWAGILATGFYQEVRR----------------------------GDFV-----------------------------  224 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------------------------HHHH-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH----------------------------Hhhc-----------------------------
Confidence            9999999998766432110                            0010                             


Q ss_pred             HhHhHhhhhccccCCCHHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEec
Q 007363          370 LFRGTVEKTYLFQGVSVDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGE  449 (606)
Q Consensus       370 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe  449 (606)
                      ...+.++++++|++++++.+++++..++.+.|+|||.|+++||.++++|+|.+|.|+++...      ...+++|++|||
T Consensus       225 ~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe  298 (355)
T 3beh_A          225 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGE  298 (355)
T ss_dssp             HHHC----------------------------------------------------------------------------
T ss_pred             ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEee
Confidence            02467889999999999999999999999999999999999999999999999999998732      247899999999


Q ss_pred             cccccCCCcccEEEEcccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHHhhh
Q 007363          450 IGVIFNIPQPFTVRTKRLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVKGLK  504 (606)
Q Consensus       450 ~~~l~~~~~~~~v~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  504 (606)
                      .+++.+.|++++++|.++|+++.+++++|.++++++|++.+.+.+.+.+|+++..
T Consensus       299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~~  353 (355)
T 3beh_A          299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAAA  353 (355)
T ss_dssp             -------------------------------------------------------
T ss_pred             hHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999998888876643
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 606
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 6e-13
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 1e-11
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 4e-10
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 4e-10
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 1e-09
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 3e-09
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 2e-08
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 4e-08
d1i5za2132 b.82.3.2 (A:6-137) Catabolite gene activator prote 4e-07
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 7e-07
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 7e-07
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 2e-05
d2gaua2142 b.82.3.2 (A:10-151) Transcriptional regulator PG03 3e-05
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 4e-05
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 1e-04
d2oz6a2134 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei 1e-04
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 62.0 bits (151), Expect = 6e-13
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302
           +T S+YW+ VT+ TVGYGD          F +  ++  IG  A  +  +   +
Sbjct: 28  WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query606
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 100.0
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.85
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.84
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.83
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.83
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.82
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.81
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.81
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.8
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.79
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.77
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.76
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.76
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.72
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.71
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.7
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.62
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.61
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.45
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.4
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.2
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 98.56
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 98.41
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 91.96
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 86.28
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-33  Score=260.56  Aligned_cols=192  Identities=20%  Similarity=0.303  Sum_probs=181.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhcccHHHHHhhCCHHHHHHHHHHHhHhHhhhhccccCCC
Q 007363          306 AVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVS  385 (606)
Q Consensus       306 ~~~~~~~~~~~~~~~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~~~  385 (606)
                      ++++++|+++++.+++||+.+++|.+|+.||++||+|.|+++..+++++++.||++|+.++..+++.++++++|+|++++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~   80 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence            35678999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccceecCCCceEEecCCCCCeEEEEEEcEEEEEEeeCCceeEEEEecCCCEEeccccccCCCcccEEEEc
Q 007363          386 VDLIAQMVSEMKAEYFPPKVEIILQNEIPTDLYIVVSGAVDVLIYKNGAEQFLTKLGSADMAGEIGVIFNIPQPFTVRTK  465 (606)
Q Consensus       386 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~~v~a~  465 (606)
                      ++++.+|+..+++..|.||++|+++||.++.+|||.+|.|+++. +++.   ...+++|++|||.+++++.+++++++|.
T Consensus        81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~-~~~~---~~~l~~G~~fGe~~~~~~~~~~~~~~a~  156 (193)
T d1q3ea_          81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNK---EMKLSDGSYFGEICLLTRGRRTASVRAD  156 (193)
T ss_dssp             HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC--CCC---EEEECTTCEECHHHHHHCSBCSSEEEES
T ss_pred             HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec-CCcc---eeeeccceeeeeeeccCCCcccccceec
Confidence            99999999999999999999999999999999999999999986 2332   4579999999999999999999999999


Q ss_pred             ccEEEEEeCHHHHHhhhccChhhHHHHHHHHHHHHH
Q 007363          466 RLSQVIRLSHHHLKQMVPIDHGDGKKIMNNFIQYVK  501 (606)
Q Consensus       466 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~  501 (606)
                      ++|+++.|++++|.+++.++|++.+.+.+.+.+|++
T Consensus       157 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~  192 (193)
T d1q3ea_         157 TYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD  192 (193)
T ss_dssp             SCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred             CceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999888875
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure