Citrus Sinensis ID: 007372

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600------

METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

ccccHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHccccccccEEEcccccccHHHHHHHHHccccccEEEEccccccHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEcccccccccccccHHHHHHHHccccccEEEcEEcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccEEcccccccHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHccccccccEEEcccccccccccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHcccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHccccccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHccccccccEEEccccccccccHHHHHHHHccccccEEcccccHHHHHHHHHHHccccc

cccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccHHHHHHHHccccccEEEEEEccEccHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccccccHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHccccHHHccccccccccHHHHHHHHHcccccccEccccccccccHHHHHHHHHccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHccccccEEEcccHHHccHHHHHcccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHcccccEEEEcccccccHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEcccccHccHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcHccccccccEEEEccccHHccHHHHHHHHHccccHHHEEEcccccccccccHHHHHHHHccccEEEEEcccEccccccccHHHcccc

metvpsavlnkeilgrLDIEALCSLACVNRALRfsvesqalpslsslhlstispdgQTLIHILGRCKALCSLTLnclrlqdhslcafltprirELNLWCCSSLSYQILASIGHNCPNLRVLMLELadkesphlfENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLpstikslklqpvlerDAFFLIRRIGRNlmetvqppiltssyyssfnLRSLSLVLDVITDELLITITASLPflveldledrpnteplarldltssglqslgschhltglsltrcrhnhqgtfkRVNDMGMFLLSegckglesvrlggfskvsdAGFAAILLSCHSLKKFEVrsasflsdlafhdltgvpCALVEVRLLWCRLITSETVKKLAssrnlevldlggcksiaDTCLRSISCLRKLTalnltgaditdsglsilaqgnlpimnlclrgckrvtdkgishllcvggtisqslttldlgympgisddgILTIAAAGIGIIDLCVRSCFYVTDASVEALArkqpdqekSKQLRRLDlcnciglsvdslrwvkrpsfrglhwlgigqtrlaskgnpviteihnerpwltfcldgceigchdgwqfhesgfi

METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPstikslklqpVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSEtvkklassrnlevldlggckSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAlarkqpdqekskqlrrldlcnciglsvdslrwvKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISddgiltiaaagigiidlCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

*******VLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED*******ARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEA*************LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFH*****

METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR**********LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		606	2.2.26 [Sep-21-2011]
Q9ZWC6		607	F-box protein At-B OS=Ara	yes	no	0.988	0.986	0.584	0.0
Q9SDA8		656	F-box/LRR-repeat protein	no	no	0.963	0.890	0.351	1e-78
C8V4D4		585	SCF E3 ubiquitin ligase c	yes	no	0.452	0.468	0.248	2e-14
Q8N1E6		418	F-box/LRR-repeat protein	yes	no	0.412	0.598	0.291	9e-14
Q8BID8		400	F-box/LRR-repeat protein	yes	no	0.410	0.622	0.290	1e-13
Q17R01		400	F-box/LRR-repeat protein	yes	no	0.410	0.622	0.290	1e-13
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.625	0.621	0.220	4e-13
Q8NEE6		735	F-box/LRR-repeat protein	no	no	0.462	0.380	0.255	3e-12
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.399	0.572	0.277	5e-12
Q96IG2		436	F-box/LRR-repeat protein	no	no	0.391	0.543	0.253	7e-12

>sp\|Q9ZWC6\|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1	Back alignment and function desciption

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/604 (58%), Positives = 436/604 (72%), Gaps = 5/604 (0%)

Query: 1   METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLI 60
           ME V  +VL +EIL RLD+E LCS+ACV+  LR +V S  LPSL+SL LS  SPD +TL 
Sbjct: 1   MEEVTRSVLAEEILKRLDLENLCSVACVSTTLRSAVVSGVLPSLTSLDLSVFSPDDETLN 60

Query: 61  HILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRV 120
           H+L  C  L SLTLNCLRL   S+   L P +REL+L  CS LS  +L  IG  CPNLRV
Sbjct: 61  HVLRGCIGLSSLTLNCLRLNAASVRGVLGPHLRELHLLRCSLLSSTVLTYIGTLCPNLRV 120

Query: 121 LMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKS 180
           L LE+AD +SP +F++NL  ML  C  LESL L IRG  + VDA AFQS+ F LP T+K+
Sbjct: 121 LTLEMADLDSPDVFQSNLTQMLNGCPYLESLQLNIRG--ILVDATAFQSVRFSLPETLKA 178

Query: 181 LKLQPVLERDAFFLIRRIGRNLMETVQPPILTS--SYYSSFNLRSLSLVLDVITDELLIT 238
           L+LQP+LE +A  L+ R         QP   ++  S   SF L+SLSLVLD+I+D L+I 
Sbjct: 179 LRLQPLLESEAILLMNRFKVTGTYLSQPDYNSALLSPSPSFTLQSLSLVLDLISDRLIIA 238

Query: 239 ITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 298
           IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C  LT LSL R  +N + +FKR+
Sbjct: 239 ITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQQLTSLSLVRTCYNRKISFKRI 298

Query: 299 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL 358
           NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC +LKKFEVR A  LSDLAFHD+
Sbjct: 299 NDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDV 358

Query: 359 TGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTAL 418
           TG  C+L EVRL  C LITSE VKKL    NLEVLDLG CKSI+D+CL S+S LRKLT+L
Sbjct: 359 TGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGSCKSISDSCLNSVSALRKLTSL 418

Query: 419 NLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478
           NL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS+LL   GTIS++L+TLDLG+M
Sbjct: 419 NLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHM 478

Query: 479 PGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQE-KSKQLRRLDLCNCI 537
           PGISD  I TI      + +L +RSCF+VTD+S+E+LA  +   E  SKQLR+L++ NC+
Sbjct: 479 PGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATWERQAEGGSKQLRKLNVHNCV 538

Query: 538 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDG 597
            L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I  +RPWLT C DGCE+GC DG
Sbjct: 539 SLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDG 598

Query: 598 WQFH 601
           W+FH
Sbjct: 599 WEFH 602

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SDA8\|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1	Back alignment and function description

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|Q8N1E6\|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1	Back alignment and function description

>sp\|Q8BID8\|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1	Back alignment and function description

>sp\|Q17R01\|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1	Back alignment and function description

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q8NEE6\|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		606
359494372		619	PREDICTED: F-box protein At-B-like [Viti	0.978	0.957	0.633	0.0
296090049		607	unnamed protein product [Vitis vinifera]	0.980	0.978	0.632	0.0
224122212		588	predicted protein [Populus trichocarpa]	0.963	0.993	0.616	0.0
13620167		606	hypothetical protein [Capsella rubella]	0.985	0.985	0.586	0.0
297853262		606	F-box family protein [Arabidopsis lyrata	0.985	0.985	0.583	0.0
15222749		607	F-box protein At-B [Arabidopsis thaliana	0.988	0.986	0.584	0.0
13619398		601	hypothetical protein [Arabidopsis thalia	0.978	0.986	0.585	0.0
147835484		2706	hypothetical protein VITISV_021632 [Viti	0.735	0.164	0.595	1e-147
350540100		607	uncharacterized protein LOC778198 [Solan	0.929	0.927	0.501	1e-140
357148280		616	PREDICTED: F-box protein At-B-like [Brac	0.943	0.928	0.456	1e-114

>gi\|359494372\|ref\|XP_002265565.2\| PREDICTED: F-box protein At-B-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/603 (63%), Positives = 453/603 (75%), Gaps = 10/603 (1%)

Query: 1   METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLI 60
           +E +P+ ++N EI+ +LD E LCS+ACV+RALRF+V S+ALP  SSL LS  SPD QTL 
Sbjct: 18  LEGLPTTLIN-EIIVKLDTETLCSVACVSRALRFAV-SEALPLSSSLDLSAFSPDAQTLN 75

Query: 61  HILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRV 120
           H++ RCK L  LTL+CLRL D S+  FL P I+ELNL  CS LSYQ+L SIG + PNLR+
Sbjct: 76  HLVSRCKGLKILTLDCLRLDDSSITIFLGPHIQELNLLRCSLLSYQLLRSIGESLPNLRL 135

Query: 121 LMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKS 180
           L LEL+  + P +F  NL  MLT C  LESL LKIRG   E DA  F+SI  FLP T+K 
Sbjct: 136 LTLELSYWDLPEVFNRNLVQMLTGCSYLESLCLKIRG--AEFDATFFRSIQHFLPKTVKI 193

Query: 181 LKLQPVLERDAFFLIR--RIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLIT 238
           LKLQPVLE+D    I   R+ RN+++T +  I  S     F L+SLSLVLD+I+DEL+ +
Sbjct: 194 LKLQPVLEQDVIRFIHELRVNRNILDTAEFGIPFSPASPGFKLQSLSLVLDIISDELISS 253

Query: 239 ITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 298
           IT SLPFL+EL LEDRP+ EP    DLT+SGLQSL  C HLT +SL R RHN    FKR+
Sbjct: 254 ITDSLPFLIELHLEDRPSKEPSPFHDLTNSGLQSLRFCRHLTDISLIRSRHNLPVYFKRI 313

Query: 299 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL 358
           NDMGMFLLSEGC+ LESVRLGGF +VSDAGFA+IL SC  LKKFEVR+A  LSDLAFHDL
Sbjct: 314 NDMGMFLLSEGCRLLESVRLGGFCRVSDAGFASILHSCWHLKKFEVRNALLLSDLAFHDL 373

Query: 359 TGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTAL 418
           TG PC+LVEV+L  C LITSETV K+ASSR LEVLDL GCKSIAD+ L SI+CL KLT L
Sbjct: 374 TGAPCSLVEVKLSSCNLITSETVHKMASSRRLEVLDLFGCKSIADSSLSSITCLNKLTTL 433

Query: 419 NLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478
           NL GAD+TD GLS+L+QG  PI +LCLRGCKRVTDKG+S L    G IS++LT LDLG+M
Sbjct: 434 NLGGADVTDRGLSVLSQGYSPISHLCLRGCKRVTDKGVSLLFHGCGVISKTLTALDLGHM 493

Query: 479 PGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 538
           PGISD  ILTIAA G GI +LC+R CFYVTD+SVEALA K+  Q+  K LR+LDL +C G
Sbjct: 494 PGISDKAILTIAAVGTGITELCIRYCFYVTDSSVEALATKRRLQDGRKPLRKLDLFHCTG 553

Query: 539 LSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGW 598
           LSV SL  +KRP F+ L W+G+G+T L+ K N    EI NERPWLT CLDGCE+GCHDGW
Sbjct: 554 LSVKSLESLKRPFFQALKWIGLGRTCLSGKAN----EILNERPWLTLCLDGCEMGCHDGW 609

Query: 599 QFH 601
            FH
Sbjct: 610 HFH 612

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296090049\|emb\|CBI39868.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224122212\|ref\|XP_002330567.1\| predicted protein [Populus trichocarpa] gi\|222872125\|gb\|EEF09256.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|13620167\|emb\|CAC36388.1\| hypothetical protein [Capsella rubella]	Back alignment and taxonomy information

>gi\|297853262\|ref\|XP_002894512.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297340354\|gb\|EFH70771.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15222749|ref|NP_175955.1| F-box protein At-B [Arabidopsis thaliana] gi|75339120|sp|Q9ZWC6.1|ATB_ARATH RecName: Full=F-box protein At-B gi|8778504|gb|AAF79512.1|AC002328_20 F20N2.2 [Arabidopsis thaliana] gi|20856547|gb|AAM26672.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gi|24111385|gb|AAN46816.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gi|332195148|gb|AEE33269.1| F-box protein At-B [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|13619398\|emb\|CAC36384.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|147835484\|emb\|CAN77480.1\| hypothetical protein VITISV_021632 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|350540100\|ref\|NP_001234642.1\| uncharacterized protein LOC778198 [Solanum lycopersicum] gi\|13620218\|emb\|CAC36396.1\| hypothetical protein [Solanum lycopersicum] gi\|13620225\|emb\|CAC36400.1\| hypothetical protein [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|357148280\|ref\|XP_003574701.1\| PREDICTED: F-box protein At-B-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		606
TAIR\|locus:2020477		607	AT1G55590 [Arabidopsis thalian	0.988	0.986	0.576	1.6e-173
TAIR\|locus:2827644		656	AT2G17020 "AT2G17020" [Arabido	0.958	0.885	0.343	2.7e-77
TAIR\|locus:2040105		628	EBF1 "AT2G25490" [Arabidopsis	0.331	0.320	0.289	1.4e-18
UNIPROTKB\|F1NMM1		345	FBXL14 "Uncharacterized protei	0.524	0.921	0.259	1.9e-15
TAIR\|locus:2143320		642	AT5G27920 "AT5G27920" [Arabido	0.828	0.781	0.235	3.9e-15
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.301	0.451	0.312	4.7e-15
UNIPROTKB\|Q17R01		400	FBXL14 "F-box/LRR-repeat prote	0.453	0.687	0.279	2.6e-14
MGI\|MGI:2141676		400	Fbxl14 "F-box and leucine-rich	0.453	0.687	0.279	2.6e-14
RGD\|1305523		400	Fbxl14 "F-box and leucine-rich	0.453	0.687	0.279	2.6e-14
UNIPROTKB\|Q8N1E6		418	FBXL14 "F-box/LRR-repeat prote	0.453	0.657	0.279	3e-14

TAIR\|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
 Identities = 348/604 (57%), Positives = 429/604 (71%)

Query:     1 METVPSAVLNKEILGRLDIEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLI 60
             ME V  +VL +EIL RLD+E LCS+ACV+  LR +V S  LPSL+SL LS  SPD +TL 
Sbjct:     1 MEEVTRSVLAEEILKRLDLENLCSVACVSTTLRSAVVSGVLPSLTSLDLSVFSPDDETLN 60

Query:    61 HILGRCKALCSLTLNCLRLQDHSLCAFLTPRIRELNLWCCSSLSYQILASIGHNCPNLRV 120
             H+L  C  L SLTLNCLRL   S+   L P +REL+L  CS LS  +L  IG  CPNLRV
Sbjct:    61 HVLRGCIGLSSLTLNCLRLNAASVRGVLGPHLRELHLLRCSLLSSTVLTYIGTLCPNLRV 120

Query:   121 LMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKS 180
             L LE+AD +SP +F++NL  ML  C  LESL L IRG  + VDA AFQS+ F LP T+K+
Sbjct:   121 LTLEMADLDSPDVFQSNLTQMLNGCPYLESLQLNIRG--ILVDATAFQSVRFSLPETLKA 178

Query:   181 LKLQPVLERDAFFLIRRIGRNLMETVQPPILTS--SYYSSFNLRSLSLVLDVITDELLIT 238
             L+LQP+LE +A  L+ R         QP   ++  S   SF L+SLSLVLD+I+D L+I 
Sbjct:   179 LRLQPLLESEAILLMNRFKVTGTYLSQPDYNSALLSPSPSFTLQSLSLVLDLISDRLIIA 238

Query:   239 ITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 298
             IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C  LT LSL R  +N + +FKR+
Sbjct:   239 ITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQQLTSLSLVRTCYNRKISFKRI 298

Query:   299 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL 358
             NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC +LKKFEVR A  LSDLAFHD+
Sbjct:   299 NDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDV 358

Query:   359 TGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTAL 418
             TG  C+L EVRL  C LITSE VKKL    NLEVLDLG CKSI+D+CL S+S LRKLT+L
Sbjct:   359 TGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGSCKSISDSCLNSVSALRKLTSL 418

Query:   419 NLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 478
             NL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS+LL   GTIS++L+TLDLG+M
Sbjct:   419 NLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHM 478

Query:   479 PGISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQEK-SKQLRRLDLCNCI 537
             PGIS                  +RSCF+VTD+S+E+LA  +   E  SKQLR+L++ NC+
Sbjct:   479 PGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATWERQAEGGSKQLRKLNVHNCV 538

Query:   538 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDG 597
              L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I  +RPWLT C DGCE+GC DG
Sbjct:   539 SLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDG 598

Query:   598 WQFH 601
             W+FH
Sbjct:   599 WEFH 602

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR\|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040105 EBF1 "AT2G25490" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

TAIR\|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8N1E6 FBXL14 "F-box/LRR-repeat protein 14" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZWC6	ATB_ARATH	No assigned EC number	0.5844	0.9884	0.9868	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		606
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-12
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-08
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-05

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 55/163 (33%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 388 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG-ADITDSGLSILAQG--NLPIMNLC 444
             LE L+L  C    D  L  +S   KL  L L G   I D GL  LAQ   NL +  L 
Sbjct: 28  SGLEWLELYMCPIS-DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQV--LD 84

Query: 445 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG---ISDDGILTIAAAGIGIIDLCV 501
           LR C+ +TD GI  L     T    L T++LG       I+D  +  +      +  +  
Sbjct: 85  LRACENITDSGIVAL----ATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140

Query: 502 RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 544
             C  VTD  V  LA        SK L RL L NC  L+  S+
Sbjct: 141 AGCD-VTDKGVWELASG-----CSKSLERLSLNNCRNLTDQSI 177

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		606
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG4341		483	consensus F-box protein containing LRR [General fu	99.95
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.87
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.8
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.71
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.64
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.59
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.59
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.56
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.53
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.48
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.45
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.43
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.42
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.32
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.17
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.08
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.02
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.85
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.82
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.76
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.76
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.75
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.73
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.69
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.64
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.63
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.55
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.49
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.47
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.42
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.27
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.25
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.25
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.25
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.24
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.22
KOG4308		478	consensus LRR-containing protein [Function unknown	98.14
KOG4308		478	consensus LRR-containing protein [Function unknown	98.09
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.77
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.64
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.6
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.48
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.46
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.39
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.38
KOG2123		388	consensus Uncharacterized conserved protein [Funct	97.34
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.33
PLN03150		623	hypothetical protein; Provisional	97.15
PLN03150		623	hypothetical protein; Provisional	97.13
KOG2123		388	consensus Uncharacterized conserved protein [Funct	97.01
PRK15386		426	type III secretion protein GogB; Provisional	96.69
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.65
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.56
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.53
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.46
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.38
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.36
PRK15386		426	type III secretion protein GogB; Provisional	96.34
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.2
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	96.11
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.59
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	95.46
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	95.31
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.14
KOG2997		366	consensus F-box protein FBX9 [General function pre	94.53
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	94.3
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	94.15
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.5
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	93.04
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.43
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	92.15
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	90.74
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.56
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.9
PF13013		109	F-box-like_2: F-box-like domain	88.62
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.18
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.73
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	82.33
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	82.22

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=7.9e-34  Score=260.83  Aligned_cols=253  Identities=23%  Similarity=0.405  Sum_probs=219.1

Q ss_pred             cChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 007372          298 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  377 (606)
Q Consensus       298 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~  377 (606)
                      +++..++.+++.|++|++|++++|+.+++.++..+..++..++.+...+|.......+..+...++-+.++++..|..++
T Consensus       203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT  282 (483)
T KOG4341|consen  203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT  282 (483)
T ss_pred             hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence            56666666777777777777777777777777777788888888877788888888888888888888889999998899


Q ss_pred             HHHHHHhc-CCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCC-CCChHHHHHHHhcCCCccEEEccCCCCCCHH
Q 007372          378 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDK  454 (606)
Q Consensus       378 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  454 (606)
                      +..+..+. .+..|+.|+.++|..++|..+..+. ++++|+.+.+.+| .+++.+++.+.++++.|+.+++.+|..+++.
T Consensus       283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence            98888777 5899999999999889999888885 7899999999999 7999999999999999999999999988888


Q ss_pred             HHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHH---cCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEE
Q 007372          455 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL  531 (606)
Q Consensus       455 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L  531 (606)
                      .+..++    .+++.|+.+.++.|..+++.++..+..   +...|+.+.+++|+.+++..++.+..       |++||++
T Consensus       363 tL~sls----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-------c~~Leri  431 (483)
T KOG4341|consen  363 TLASLS----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-------CRNLERI  431 (483)
T ss_pred             hHhhhc----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-------Cccccee
Confidence            788777    789999999999999999998888753   35789999999999999999999985       9999999


Q ss_pred             eccCCCCCCHHHHHHhhcCCCCCceEEEeec
Q 007372          532 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQ  562 (606)
Q Consensus       532 ~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~  562 (606)
                      ++.+|..++..++..+. ..+|++++.-...
T Consensus       432 ~l~~~q~vtk~~i~~~~-~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  432 ELIDCQDVTKEAISRFA-THLPNIKVHAYFA  461 (483)
T ss_pred             eeechhhhhhhhhHHHH-hhCccceehhhcc
Confidence            99999999999999987 6788887766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		606
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	7e-36
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-25
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-22
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-35
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	4e-27
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-22
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-27
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-22
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-19
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	9e-14
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	8e-13
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-09
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-13
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-06
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-12
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-08
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	1e-08
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	8e-07
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-04
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-05
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	4e-04
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	7e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  141 bits (357), Expect = 7e-36
 Identities = 81/483 (16%), Positives = 154/483 (31%), Gaps = 63/483 (13%)

Query: 41  LPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCLRLQDHSLCAFLT--PRIRELNLW 98
               + +           +  +      L  + L  + + D  L          + L L 
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138

Query: 99  CCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGF 158
            C   S   LA+I   C NL+ L L  +D +   +  + L+    +   L SL++     
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVD--DVSGHWLSHFPDTYTSLVSLNI--SCL 194

Query: 159 GVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLME-----------TVQ 207
             EV   A + ++   P+ +KSLKL   +  +    + +    L E              
Sbjct: 195 ASEVSFSALERLVTRCPN-LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253

Query: 208 PPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEP-------- 259
              L+ +      LR LS   D      L  + +    L  L+L                
Sbjct: 254 YSGLSVALSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 260 ---LARLDL----TSSGLQSLGS-CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCK 311
              L RL +      +GL+ L S C  L  L +             + + G+  +S GC 
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 312 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLL 371
            LESV L    ++++A    I  +  ++ +F +      +                    
Sbjct: 373 KLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL---------------- 415

Query: 372 WCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSG 429
                       +    ++L  L L G   + D     I    +K+  L++  A  +D G
Sbjct: 416 -TLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472

Query: 430 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 489
           +  +  G   +  L +R C       +++         +++ +L +     +S      +
Sbjct: 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASK-----LETMRSLWMSSC-SVSFGACKLL 526

Query: 490 AAA 492
              
Sbjct: 527 GQK 529

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		606
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.96
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.95
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.94
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.94
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.9
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.88
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.87
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.87
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.68
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.66
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.62
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.61
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.61
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.61
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.61
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.59
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.58
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.56
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.55
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.55
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.51
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.51
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.5
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.49
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.48
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.48
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.45
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.44
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.44
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.43
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.43
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.42
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.4
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.38
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.37
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.37
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.34
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.33
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.33
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.27
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.24
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.23
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.21
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.21
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.19
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.16
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.14
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.12
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	99.07
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.02
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.99
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.94
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.92
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.91
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.89
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.89
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.85
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.85
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.84
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.83
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.79
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.79
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.78
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.74
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.74
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.73
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.71
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.67
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.65
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.64
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.64
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.62
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.5
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.5
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.48
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.43
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.37
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.32
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.29
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.28
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.22
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.2
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	98.06
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.01
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.99
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.92
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.91
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.8
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.8
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.75
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.71
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.68
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.66
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.62
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.54
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.42
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.04
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	97.04
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.0
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.92
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.86
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.82
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.72
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	88.56
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	87.48
3rfe_A		130	Platelet glycoprotein IB beta chain; platelet surf	82.0

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=1.1e-39  Score=348.29  Aligned_cols=495  Identities=18%  Similarity=0.174  Sum_probs=251.3

Q ss_pred             CCCchhhhHHHHHHhcCc-hhhhhhHHhhhHHHHhhhccccCCCCceeeecCCCCChhHHHHHHhhCcccCceecccC-C
Q 007372            1 METVPSAVLNKEILGRLD-IEALCSLACVNRALRFSVESQALPSLSSLHLSTISPDGQTLIHILGRCKALCSLTLNCL-R   78 (606)
Q Consensus         1 i~~LP~evl~~~I~~~L~-~~~~~~~~~vck~w~~~~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~   78 (606)
                      +.+||+||+. +||+||+ .+|++++++|||+|+.+. ...|   +.+++..+....  ...+..++++|++|+++++ .
T Consensus         6 ~~~LPdevL~-~If~~L~~~~d~~~~s~vck~W~~~~-~~~~---~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~   78 (594)
T 2p1m_B            6 ALSFPEEVLE-HVFSFIQLDKDRNSVSLVCKSWYEIE-RWCR---RKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPH   78 (594)
T ss_dssp             ----CHHHHH-HHHHTCCCHHHHHHHHTSCHHHHHHH-HHHC---CEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCG
T ss_pred             hhhCCHHHHH-HHHhhcCCchhHHHHHHHHHHHHHhh-hhhc---eEEeeccccccC--HHHHHhhCCCceEEeccCCCc
Confidence            3589999999 7999999 999999999999999884 3333   466777665433  3356667999999999654 3


Q ss_pred             CChhh-------------hhhhh--cCCcceEeccCCCCCcHHHHHHHhhcCCCcceeeeccccccCCccchHHHHHHHH
Q 007372           79 LQDHS-------------LCAFL--TPRIRELNLWCCSSLSYQILASIGHNCPNLRVLMLELADKESPHLFENNLAIMLT  143 (606)
Q Consensus        79 l~~~~-------------l~~~~--~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~i~~~~l~~~~~  143 (606)
                      +.+..             +..+.  +++|++|++++| .+++..+..+...+++|++|++..+.    .++..++..+..
T Consensus        79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~  153 (594)
T 2p1m_B           79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAA  153 (594)
T ss_dssp             GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHH
T ss_pred             hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHH
Confidence            33322             12222  478888888877 46777777776678888888886652    345556667777


Q ss_pred             hCCCCceeeeeeccCcccccccchhhhh--hhcccceeEEeecCCc----ccchHHHHHHhhcccccccCcccccccccC
Q 007372          144 SCLQLESLSLKIRGFGVEVDACAFQSII--FFLPSTIKSLKLQPVL----ERDAFFLIRRIGRNLMETVQPPILTSSYYS  217 (606)
Q Consensus       144 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (606)
                      ++++|++|+++.+.    +.......+.  ...+++|+.|+++++.    ...+..+..                    .
T Consensus       154 ~~~~L~~L~L~~~~----i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~--------------------~  209 (594)
T 2p1m_B          154 TCRNLKELDLRESD----VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT--------------------R  209 (594)
T ss_dssp             HCTTCCEEECTTCE----EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH--------------------H
T ss_pred             hCCCCCEEeCcCCc----cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH--------------------h
Confidence            88888888887532    2222211110  1124555555555543    111111111                    1


Q ss_pred             CCCccEEecccCCCCHHHHHHHHhhCCCCCEEEcCCCCCCCcccccccChhHHhhccCCCCccEEE-eccccccCCCCcc
Q 007372          218 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLS-LTRCRHNHQGTFK  296 (606)
Q Consensus       218 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~  296 (606)
                      +++|++|+++++. ....++.+...+++|++|++..+......  ..+. .....+..+++|+.|. +..          
T Consensus       210 ~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~l~~~l~~~~~L~~Ls~~~~----------  275 (594)
T 2p1m_B          210 CPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRP--DVYS-GLSVALSGCKELRCLSGFWD----------  275 (594)
T ss_dssp             CTTCCEEECCTTS-CHHHHHHHHHHCTTCSEEECSBCCCCCCH--HHHH-HHHHHHHTCTTCCEEECCBT----------
T ss_pred             CCCCcEEecCCCC-cHHHHHHHHhcCCcceEcccccccCccch--hhHH-HHHHHHhcCCCcccccCCcc----------
Confidence            4555555555431 11124444444555555555443210000  0000 0111233445555542 111          


Q ss_pred             ccChHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 007372          297 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI  376 (606)
Q Consensus       297 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l  376 (606)
                       .....+..+...+++|++|++++|. +++..+..+...+++|+.|++.++  +.+..+..+...+++|++|++.+|...
T Consensus       276 -~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~  351 (594)
T 2p1m_B          276 -AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPF  351 (594)
T ss_dssp             -CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred             -cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence             2222222233344555555555552 444444444444555555555543  333344444444444554444211000


Q ss_pred             CHHHHHHhcCCCCCcEEEccCCCCCChHHHHccc-CCCCCCEEEccCCCCChHHHHHHHhcCCCccEEEcc-----CCCC
Q 007372          377 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLR-----GCKR  450 (606)
Q Consensus       377 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~-----~~~~  450 (606)
                      .                 ...+..+++.++..+. .+++|++|.+..+.+++.++..+...+++|++|+++     +|..
T Consensus       352 g-----------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          352 V-----------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             C-----------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             c-----------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            0                 0122244444444443 255555555544455555555554445555555555     3444


Q ss_pred             CC----HHHHHHHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCC
Q 007372          451 VT----DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSK  526 (606)
Q Consensus       451 ~~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~  526 (606)
                      ++    +.++..+.    ..+++|+.|++++  .+++.++..+.+.+++|++|++++|. +++.++..+..      .++
T Consensus       415 l~~~~~~~~~~~l~----~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~------~~~  481 (594)
T 2p1m_B          415 LTLEPLDIGFGAIV----EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLS------GCD  481 (594)
T ss_dssp             TTCCCTHHHHHHHH----HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHH------HCT
T ss_pred             ccCCchhhHHHHHH----hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHh------cCC
Confidence            44    44444433    2445555555544  45555555555445555555555554 55555555533      355


Q ss_pred             CCCEEeccCCCCCCHHHHHHhhcCCCCCceEEEeeceeccCCChhHHHHHhhcCCceE
Q 007372          527 QLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT  584 (606)
Q Consensus       527 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  584 (606)
                      +|++|++++|+ +++.++..+. ..+++|+.|++++|+++.   +.+..+....|.+.
T Consensus       482 ~L~~L~L~~n~-~~~~~~~~~~-~~l~~L~~L~l~~~~~~~---~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          482 SLRKLEIRDCP-FGDKALLANA-SKLETMRSLWMSSCSVSF---GACKLLGQKMPKLN  534 (594)
T ss_dssp             TCCEEEEESCS-CCHHHHHHTG-GGGGGSSEEEEESSCCBH---HHHHHHHHHCTTEE
T ss_pred             CcCEEECcCCC-CcHHHHHHHH-HhCCCCCEEeeeCCCCCH---HHHHHHHHhCCCCE
Confidence            55555555553 3544444332 234555555555555421   23333434445554

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		606
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 39/243 (16%), Positives = 75/243 (30%), Gaps = 21/243 (8%)

Query: 194 LIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 253
           +  R  R+ M+            S F ++ + L   VI    L  I +    L  L LE 
Sbjct: 26  IAFRCPRSFMDQPLAEHF-----SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE- 79

Query: 254 RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGL 313
                    L L+   + +L    +L  L+L+ C    +   + +      L        
Sbjct: 80  --------GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 314 ESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 373
                             I     S  +  ++ +   + +           LV + L   
Sbjct: 132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC------PNLVHLDLSDS 185

Query: 374 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL 433
            ++ ++  ++      L+ L L  C  I    L  +  +  L  L + G  + D  L +L
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 244

Query: 434 AQG 436
            + 
Sbjct: 245 KEA 247

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		606
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.89
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.89
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.73
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.69
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.61
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.54
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.3
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.26
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.25
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.24
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.19
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.1
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.08
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.03
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.96
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.94
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.84
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.84
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.79
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.78
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.77
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.74
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.66
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.6
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.56
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.54
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.53
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.4
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.37
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.34
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.33
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.16
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.11
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.0
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.78
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.62
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.91
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-20  Score=191.39  Aligned_cols=191  Identities=22%  Similarity=0.294  Sum_probs=125.1

Q ss_pred             CCCCCcEEEccCCCCCChHHH----HcccCCCCCCEEEccCCCCChHHHHHHHh----cCCCccEEEccCCCCCCHHHHH
Q 007372          386 SSRNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITDSGLSILAQ----GNLPIMNLCLRGCKRVTDKGIS  457 (606)
Q Consensus       386 ~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~  457 (606)
                      ..+.++.+++++| .+.....    ..+...+.++.+++++|.+++.++..+..    ..+.|+.+++++|. +++.+..
T Consensus       253 ~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~  330 (460)
T d1z7xw1         253 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS  330 (460)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc-hhhhhhh
Confidence            3566777777766 4444332    22345667777777777777766655533    34567778877775 6555544


Q ss_pred             HHHhhcCCCCCCCCEEecCCCCCCCHHHHHHHHHc----CCCCcEEEecCCCCCCHHHHHHHHhhCCCcccCCCCCEEec
Q 007372          458 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL  533 (606)
Q Consensus       458 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l  533 (606)
                      .+... ...+++|++|++++| .+++.++..+++.    .+.|++|++++|. |++.++.+++..+.   .+++|++|++
T Consensus       331 ~l~~~-~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~---~~~~L~~L~L  404 (460)
T d1z7xw1         331 HFSSV-LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLL---ANHSLRELDL  404 (460)
T ss_dssp             HHHHH-HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH---HCCCCCEEEC
T ss_pred             hcccc-cccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHh---cCCCCCEEEC
Confidence            44310 024567888888877 6777776666543    3568888888886 88877766655433   5778888888


Q ss_pred             cCCCCCCHHHHHHhhc---CCCCCceEEEeeceeccCCChhHHHHHhhcCCceEE
Q 007372          534 CNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTF  585 (606)
Q Consensus       534 ~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  585 (606)
                      ++| .+++.++..+..   .+...|+.|++.++.+..+....++++....|.+++
T Consensus       405 s~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         405 SNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             CSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             CCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            888 588776655421   234468888888888776666777777778887774

PyMOL of d1z7xw1

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure