Citrus Sinensis ID: 007385

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-----
MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASLKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNGNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDEEEEELSEH
ccccccHHHHHHHHHHHHcccEEccccccccccccccccccEEEEcccccEEEEEcccEEEccccccEEEcccccEEEccccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEccccccHHHHHHHccccccHHHHHHHHHHccEEEEEEEEEccEEEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEEccccccccccHHHHHHcccccccEEEEEcccHHccccccccccHHHHHHHHHHHcccccHHccccccccccccccccccccccccccccccccccEEEccccEEEEcccccccccccEEEEEEEEEcccccccHHHHHHHccccccEEccccccccccccccccccccccccccccEEEEccEEEcccEEEEEccEEEEEcccccEEEEEEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccEEEEEEEEccccccccccccHHcccc
ccccccHHHHHHHHHHHHccccccccccHHHHccccccccEEEEEccccccEEEEcccEEEccccccEEccccccEEEccccccHHHHHHHHHHHccccccccccccHHHccccccHHHHHHHHHHHccccEEEEEEEEEEEccccEcHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccHHHHHHHccccccEEEEEEEEHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccEEEEEcccEEcccccEEEEEEEEEccccccEHEEHHHHHccccHccccccccccccccccccccEcEEcccccEEEEEccccccccEEEEEccEEEEccccccEEEEEEEEEccccccEEEEccccccccccccccccHHHHHccccccccccccccccEEEcccccccccccccccccHEEEEcccHccccccccccEEEEEccEEEccccEEEEEEEEEEEccccccccHHHHccc
MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCkgdlkdsrlieidkdggreivlpggisipnvsksikcdkgertrfrsdVLSFQQMSEQFNQELsltgkipsglFNAMFEFsgywqkdaantktlaFDGMFISLYSVALEKSQMVLRDRVkkavpatwepaALASFIETYGTHIIVGVRMGGKDVIYVKQkhsstlqpADVQKRLKEMADKRfldangqyslsseqvyqndkfdireqrlrfadtspsssysykedMVCICkrrggsdnrnlshnewlhtvqfepdvtsmsfipitsllngvpgsgflsHAINLYlrykppieELHQFLEfqlprqwapvfselplgpqrkqqstaslkfslmgpklfvntnpvdvghrpvtgLRLYLEGRSSNRLAVHLQHlsslpkifqlvddpngnfrrenhdrkyYEKVqwknyshvctapvepyedlsivtGAQLHVENHGFKNILFLRLRFSTVLGatvlkhpewdgspglapksgLISTLISHhfttvqkppprpadvninsavypggppvpvqapkllkfvdttemtrgpqdspgywvvSGARLVVEKGRISLRVKYSLLTvvlpdeeeeelseh
MALKVSAQKAAEvaigsigrgydIAIDLRLKYCkgdlkdsrlieidkdggreivlpggisipnvsksikcdkgeRTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQkhsstlqpadVQKRLKEMADKRFLdangqyslsseqvyqnDKFDIREQRlrfadtspsssysykedMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASLKFSLMGPKLfvntnpvdvghrPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNGNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEmtrgpqdspgywvVSGARLVVEKgrislrvkyslltvvlpdeeeeelseh
MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASLKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNGNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDeeeeeLSEH
***********EVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCD**********VL**********QELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQ**************************************************************YKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELP************LKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNGNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTV***************VY*********APKLLKFVDT**********PGYWVVSGARLVVEKGRISLRVKYSLLTVVL***********
************VAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVLSFQQMSE*************SGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVL***VK***PATWEPAALASFIETYGTHIIVGVRMGGKDVIY******************KEMADKRFL*********************************************ICKRRG***NRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPL*PQ*****TASLKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDP********HDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKH******************************************VYPGGPPVPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVV************
**********AEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQRLRFA*********YKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLG*********SLKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNGNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLP**********
*****S******VAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFL***************************************KEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASLKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDP***FRR*NHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWD*****************************PADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLP**********
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MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASLKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNGNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFSTVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDEEEEELSEH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query605 2.2.26 [Sep-21-2011]
Q9STW5606 MACPF domain-containing p yes no 0.998 0.996 0.781 0.0
Q9SGN6612 MACPF domain-containing p no no 0.971 0.960 0.532 1e-175
Q8L612627 MACPF domain-containing p no no 0.940 0.907 0.439 1e-136
Q9C7N2561 MACPF domain-containing p no no 0.854 0.921 0.436 1e-129
>sp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1 Back     alignment and function desciption
 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/605 (78%), Positives = 532/605 (87%), Gaps = 1/605 (0%)

Query: 1   MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEI-DKDGGREIVLPGGI 59
           MAL++ A KAAEVAIGSIG GYD+AIDLRLKYCKG  KDSRL++I + D   EIVLPGGI
Sbjct: 1   MALRLPASKAAEVAIGSIGCGYDLAIDLRLKYCKGGSKDSRLLDIKEGDDNCEIVLPGGI 60

Query: 60  SIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQK 119
           SIPNVSKSIKCDKGER RFRSD+L FQQM+EQFNQELSL GKIPSGLFNAMFEFS  WQK
Sbjct: 61  SIPNVSKSIKCDKGERMRFRSDILPFQQMAEQFNQELSLAGKIPSGLFNAMFEFSSCWQK 120

Query: 120 DAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVG 179
           DAA TK LAFDG+FISLYSVAL+KSQ++LR+ VK+AVP+TW+PAALA FI+ YGTHIIV 
Sbjct: 121 DAAYTKNLAFDGVFISLYSVALDKSQVLLREHVKQAVPSTWDPAALARFIDIYGTHIIVS 180

Query: 180 VRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIRE 239
           V+MGGKDVIY KQ+HSS LQP D+QKRLKE+ADKRF++A+  ++  SE+V  + K + +E
Sbjct: 181 VKMGGKDVIYAKQQHSSKLQPEDLQKRLKEVADKRFVEASVVHNTGSERVQASSKVETKE 240

Query: 240 QRLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITS 299
           QRLRFADTS   SY+ KED V +CKRRGG+DNRNL HNEWL TVQ EPDV SMSFIPITS
Sbjct: 241 QRLRFADTSSLGSYANKEDYVFMCKRRGGNDNRNLMHNEWLQTVQMEPDVISMSFIPITS 300

Query: 300 LLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTAS 359
           LLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQS AS
Sbjct: 301 LLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSCAS 360

Query: 360 LKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPN 419
           L+FS  GPKL+VNT PVDVG RP+TG+RLYLEGR SNRLA+HLQHLSSLPKI+QL DD N
Sbjct: 361 LQFSFFGPKLYVNTTPVDVGKRPITGMRLYLEGRRSNRLAIHLQHLSSLPKIYQLEDDLN 420

Query: 420 GNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRF 479
            + R+E+HDR+YYEKV WKNYSHVCT PVE  +DLS+VTGAQLHVE+HGFKN+LFLRL F
Sbjct: 421 RSIRQESHDRRYYEKVNWKNYSHVCTEPVESDDDLSVVTGAQLHVESHGFKNVLFLRLCF 480

Query: 480 STVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPP 539
           S V+GAT++K+ EWD + G APKSGLISTLISHHFT  QKPPPRPADVNINSA+YPGGPP
Sbjct: 481 SRVVGATLVKNSEWDEAVGFAPKSGLISTLISHHFTAAQKPPPRPADVNINSAIYPGGPP 540

Query: 540 VPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDEEE 599
           VP QAPKLLKFVDT+EMTRGPQ+SPGYWVVSGARL+VEKG+ISL+VKYSL T +L DE  
Sbjct: 541 VPTQAPKLLKFVDTSEMTRGPQESPGYWVVSGARLLVEKGKISLKVKYSLFTPILGDEVI 600

Query: 600 EELSE 604
           EE  E
Sbjct: 601 EEAYE 605
Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SGN6|NSL1_ARATH MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L612|MACP1_ARATH MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1 Back     alignment and function description
>sp|Q9C7N2|CAD1_ARATH MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query605
255570992603 conserved hypothetical protein [Ricinus 0.991 0.995 0.85 0.0
225465179603 PREDICTED: uncharacterized protein LOC10 0.993 0.996 0.833 0.0
356560105604 PREDICTED: uncharacterized protein LOC10 0.988 0.990 0.831 0.0
356543391605 PREDICTED: uncharacterized protein LOC10 0.990 0.990 0.828 0.0
92870237610 Membrane attack complex component/perfor 0.973 0.965 0.813 0.0
357445279626 hypothetical protein MTR_2g005730 [Medic 0.973 0.940 0.790 0.0
449431854604 PREDICTED: MACPF domain-containing prote 0.986 0.988 0.794 0.0
30686484606 MAC/Perforin domain-containing protein [ 0.998 0.996 0.781 0.0
343172262596 hypothetical protein, partial [Silene la 0.985 1.0 0.783 0.0
297803684606 hypothetical protein ARALYDRAFT_492421 [ 0.993 0.991 0.775 0.0
>gi|255570992|ref|XP_002526447.1| conserved hypothetical protein [Ricinus communis] gi|223534227|gb|EEF35942.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1073 bits (2775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/600 (85%), Positives = 557/600 (92%)

Query: 1   MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGIS 60
           MALK  A +AA++AIGSIGRGYDI  DLRLKYCKG+  + +LIEID  GGREI+LPGGIS
Sbjct: 1   MALKRPAPEAAKIAIGSIGRGYDITADLRLKYCKGEGNNCQLIEIDDGGGREIILPGGIS 60

Query: 61  IPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKD 120
           IP VSKSIKCDKGERTRF SDVLSFQQMSEQFNQE+SLTGKIPSGLFN+MFEFSG WQKD
Sbjct: 61  IPKVSKSIKCDKGERTRFSSDVLSFQQMSEQFNQEMSLTGKIPSGLFNSMFEFSGCWQKD 120

Query: 121 AANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGV 180
           AANTKTLAFDG+FI+LY+VALEKSQMVLRD VKKAVP++WEPAALA FIET+GTHIIVGV
Sbjct: 121 AANTKTLAFDGVFITLYTVALEKSQMVLRDHVKKAVPSSWEPAALAKFIETFGTHIIVGV 180

Query: 181 RMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQ 240
           +MGGKDV+Y+KQ+HSS LQPADVQKRLKEMADKRFLD  G Y ++SE V+ N+K ++REQ
Sbjct: 181 KMGGKDVVYMKQQHSSVLQPADVQKRLKEMADKRFLDTGGPYGMASEPVFPNNKLEVREQ 240

Query: 241 RLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITSL 300
           RLRF DTSPSSSYS+KED+V I KRRGG+D++ LSH+EWL+TVQFEPDV SMSFIPITSL
Sbjct: 241 RLRFVDTSPSSSYSHKEDIVRIYKRRGGNDDKRLSHSEWLYTVQFEPDVISMSFIPITSL 300

Query: 301 LNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASL 360
           LNG+PGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASL
Sbjct: 301 LNGIPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTASL 360

Query: 361 KFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPNG 420
           +FSLMGPKLFVNT PVDVG RPVTGLRLYLEG+ SNRLA+HLQHLSSLPK+FQL DDPNG
Sbjct: 361 QFSLMGPKLFVNTTPVDVGKRPVTGLRLYLEGKRSNRLAIHLQHLSSLPKVFQLADDPNG 420

Query: 421 NFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRFS 480
           NF +E++DRKYYEKVQWKN+SHVCTAPVE  E+LSIVTG QL VEN GFKNILFLRLRFS
Sbjct: 421 NFNQESYDRKYYEKVQWKNFSHVCTAPVESDEELSIVTGGQLQVENSGFKNILFLRLRFS 480

Query: 481 TVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPPV 540
           TV GA  +KHPEWDGSPGLAPKSGLISTLISHHFT+VQKPPPRPADVNINSAVYPGGPPV
Sbjct: 481 TVTGAAAVKHPEWDGSPGLAPKSGLISTLISHHFTSVQKPPPRPADVNINSAVYPGGPPV 540

Query: 541 PVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDEEEE 600
           PVQ PKLLKFVDTTEMTRGPQ++PGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDE+ E
Sbjct: 541 PVQVPKLLKFVDTTEMTRGPQETPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPDEDLE 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465179|ref|XP_002263223.1| PREDICTED: uncharacterized protein LOC100262558 [Vitis vinifera] gi|297739517|emb|CBI29699.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560105|ref|XP_003548336.1| PREDICTED: uncharacterized protein LOC100792953 [Glycine max] Back     alignment and taxonomy information
>gi|356543391|ref|XP_003540144.1| PREDICTED: uncharacterized protein LOC100800447 [Glycine max] Back     alignment and taxonomy information
>gi|92870237|gb|ABE79564.1| Membrane attack complex component/perforin/complement C9 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357445279|ref|XP_003592917.1| hypothetical protein MTR_2g005730 [Medicago truncatula] gi|355481965|gb|AES63168.1| hypothetical protein MTR_2g005730 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449431854|ref|XP_004133715.1| PREDICTED: MACPF domain-containing protein At4g24290-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30686484|ref|NP_849433.1| MAC/Perforin domain-containing protein [Arabidopsis thaliana] gi|75207745|sp|Q9STW5.1|MACP2_ARATH RecName: Full=MACPF domain-containing protein At4g24290 gi|5051771|emb|CAB45064.1| putative protein [Arabidopsis thaliana] gi|7269279|emb|CAB79339.1| putative protein [Arabidopsis thaliana] gi|332659486|gb|AEE84886.1| MAC/Perforin domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|343172262|gb|AEL98835.1| hypothetical protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|297803684|ref|XP_002869726.1| hypothetical protein ARALYDRAFT_492421 [Arabidopsis lyrata subsp. lyrata] gi|297315562|gb|EFH45985.1| hypothetical protein ARALYDRAFT_492421 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query605
TAIR|locus:2135912606 AT4G24290 "AT4G24290" [Arabido 0.985 0.983 0.785 5e-257
TAIR|locus:2032532612 NSL1 "AT1G28380" [Arabidopsis 0.970 0.959 0.536 6.5e-161
TAIR|locus:2006807627 AT1G14780 "AT1G14780" [Arabido 0.743 0.717 0.446 1.3e-130
TAIR|locus:2013673561 CAD1 "AT1G29690" [Arabidopsis 0.540 0.582 0.467 9.4e-122
ZFIN|ZDB-GENE-111212-12574 prf1.8 "perforin 1.8" [Danio r 0.259 0.273 0.270 0.00017
TAIR|locus:2135912 AT4G24290 "AT4G24290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2474 (876.0 bits), Expect = 5.0e-257, P = 5.0e-257
 Identities = 469/597 (78%), Positives = 528/597 (88%)

Query:     1 MALKVSAQKAAEVAIGSIGRGYDIAIDLRLKYCKGDLKDSRLIEIDK-DGGREIVLPGGI 59
             MAL++ A KAAEVAIGSIG GYD+AIDLRLKYCKG  KDSRL++I + D   EIVLPGGI
Sbjct:     1 MALRLPASKAAEVAIGSIGCGYDLAIDLRLKYCKGGSKDSRLLDIKEGDDNCEIVLPGGI 60

Query:    60 SIPNVSKSIKCDKGERTRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQK 119
             SIPNVSKSIKCDKGER RFRSD+L FQQM+EQFNQELSL GKIPSGLFNAMFEFS  WQK
Sbjct:    61 SIPNVSKSIKCDKGERMRFRSDILPFQQMAEQFNQELSLAGKIPSGLFNAMFEFSSCWQK 120

Query:   120 DAANTKTLAFDGMFISLYSVALEKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVG 179
             DAA TK LAFDG+FISLYSVAL+KSQ++LR+ VK+AVP+TW+PAALA FI+ YGTHIIV 
Sbjct:   121 DAAYTKNLAFDGVFISLYSVALDKSQVLLREHVKQAVPSTWDPAALARFIDIYGTHIIVS 180

Query:   180 VRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIRE 239
             V+MGGKDVIY KQ+HSS LQP D+QKRLKE+ADKRF++A+  ++  SE+V  + K + +E
Sbjct:   181 VKMGGKDVIYAKQQHSSKLQPEDLQKRLKEVADKRFVEASVVHNTGSERVQASSKVETKE 240

Query:   240 QRLRFADTSPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDVTSMSFIPITS 299
             QRLRFADTS   SY+ KED V +CKRRGG+DNRNL HNEWL TVQ EPDV SMSFIPITS
Sbjct:   241 QRLRFADTSSLGSYANKEDYVFMCKRRGGNDNRNLMHNEWLQTVQMEPDVISMSFIPITS 300

Query:   300 LLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSTAS 359
             LLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQS AS
Sbjct:   301 LLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSCAS 360

Query:   360 LKFSLMGPKLFVNTNPVDVGHRPVTGLRLYLEGRSSNRLAVHLQHLSSLPKIFQLVDDPN 419
             L+FS  GPKL+VNT PVDVG RP+TG+RLYLEGR SNRLA+HLQHLSSLPKI+QL DD N
Sbjct:   361 LQFSFFGPKLYVNTTPVDVGKRPITGMRLYLEGRRSNRLAIHLQHLSSLPKIYQLEDDLN 420

Query:   420 GNFRRENHDRKYYEKVQWKNYSHVCTAPVEPYEDLSIVTGAQLHVENHGFKNILFLRLRF 479
              + R+E+HDR+YYEKV WKNYSHVCT PVE  +DLS+VTGAQLHVE+HGFKN+LFLRL F
Sbjct:   421 RSIRQESHDRRYYEKVNWKNYSHVCTEPVESDDDLSVVTGAQLHVESHGFKNVLFLRLCF 480

Query:   480 STVLGATVLKHPEWDGSPGLAPKSGLISTLISHHFTTVQKPPPRPADVNINSAVYPGGPP 539
             S V+GAT++K+ EWD + G APKSGLISTLISHHFT  QKPPPRPADVNINSA+YPGGPP
Sbjct:   481 SRVVGATLVKNSEWDEAVGFAPKSGLISTLISHHFTAAQKPPPRPADVNINSAIYPGGPP 540

Query:   540 VPVQAPKLLKFVDTTEMTRGPQDSPGYWVVSGARLVVEKGRISLRVKYSLLTVVLPD 596
             VP QAPKLLKFVDT+EMTRGPQ+SPGYWVVSGARL+VEKG+ISL+VKYSL T +L D
Sbjct:   541 VPTQAPKLLKFVDTSEMTRGPQESPGYWVVSGARLLVEKGKISLKVKYSLFTPILGD 597
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2032532 NSL1 "AT1G28380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006807 AT1G14780 "AT1G14780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013673 CAD1 "AT1G29690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-111212-12 prf1.8 "perforin 1.8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9STW5MACP2_ARATHNo assigned EC number0.78180.99830.9966yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query605
pfam01823209 pfam01823, MACPF, MAC/Perforin domain 3e-31
smart00457195 smart00457, MACPF, membrane-attack complex / perfo 3e-22
PTZ00482844 PTZ00482, PTZ00482, membrane-attack complex/perfor 0.001
>gnl|CDD|216723 pfam01823, MACPF, MAC/Perforin domain Back     alignment and domain information 
 Score =  120 bits (303), Expect = 3e-31
 Identities = 49/227 (21%), Positives = 80/227 (35%), Gaps = 32/227 (14%)

Query: 105 GLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKS-QMVLRDRVKKAV---PATW 160
           G F+A  EF     K      +      + SLY  +L+    + L D   KA+   P+T+
Sbjct: 1   GSFSASSEFKSLSNKTKQKKSSFIISKSYCSLYQFSLKPPNDLELSDEFLKALNALPSTY 60

Query: 161 EPAALA---SFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFLD 217
           + A       F E YGTH I  V +GGK V  +K         + V+K     +D   + 
Sbjct: 61  DSATKDSYIQFFEKYGTHYITSVTLGGKIVYVLKLD------SSQVKKLKLTGSD--CVS 112

Query: 218 ANGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSY-KEDMVCICKRRGGSD-----N 271
           A    S             +  +  +   +S     S             GG+      +
Sbjct: 113 AEAGASFGK----------VSSKGCKSTSSSQKEKKSSSSSIESSKTDVIGGTPEFNAGS 162

Query: 272 RNLSHNEWLHTVQFEPDVTSMSFIPITSLL-NGVPGSGFLSHAINLY 317
              ++++W  +V+  P       +PI+ LL         L  A+  Y
Sbjct: 163 DPKTYSKWAESVKDNPMPIKYKLVPISELLKEVPCKKENLKKALEEY 209

The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (pfam01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold. Length = 209
>gnl|CDD|214671 smart00457, MACPF, membrane-attack complex / perforin Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 605
smart00457194 MACPF membrane-attack complex / perforin. 99.95
PF01823212 MACPF: MAC/Perforin domain; InterPro: IPR020864 Th 99.93
PTZ00482844 membrane-attack complex/perforin (MACPF) Superfami 99.9
PTZ00481524 Membrane attack complex/ Perforin (MACPF) Superfam 99.79
>smart00457 MACPF membrane-attack complex / perforin Back     alignment and domain information 
Probab=99.95  E-value=4.4e-28  Score=236.35  Aligned_cols=168  Identities=24%  Similarity=0.371  Sum_probs=125.5

Q ss_pred             eeEeeEEEEEEEEEEcCCCCCCchhHh---ccCCCCCChHHHHHHHhccceEEEEceEecCE-EEE-EEe--ehhcCCCC
Q 007385          127 LAFDGMFISLYSVALEKSQMVLRDRVK---KAVPATWEPAALASFIETYGTHIIVGVRMGGK-DVI-YVK--QKHSSTLQ  199 (605)
Q Consensus       127 la~dg~~I~ly~frL~~~~L~LseeF~---k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dvi-yVr--q~ksSglT  199 (605)
                      ++.+.+.|.+|++++.  +++|+++|+   ++||..|++++|++||++||||||++++|||+ ..+ .++  +++..+++
T Consensus         3 ~~~~~v~~~~y~~~~~--~~~l~~~f~~~l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~Gg~~~~~~~~~~~~~~~~~~~   80 (194)
T smart00457        3 VARWTVRNRLYSVKLD--DIPLALEFLKALRDLPDQYNRGAYARFIDKYGTHYITSATLGGEYSLLLVLDKKSLERKGLT   80 (194)
T ss_pred             EEEEEEEEEEEEecCC--CCCcCHHHHHHHHhCccccCHHHHHHHHHHhCCeEEEeeeeeeeEEEEEEEcHHHHHhcCCC
Confidence            4566666666666665  589999999   69999999999999999999999999999999 444 333  35566899


Q ss_pred             HHHHHHHHHhhcCeeEe-cccCcccccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEeecCC---------
Q 007385          200 PADVQKRLKEMADKRFL-DANGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGS---------  269 (605)
Q Consensus       200 ~~EVk~CL~~~a~~~F~-~~~~~sc~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~---------  269 (605)
                      .++++.|++. +...|. ..+...|.+.....+        ...+|          ...+  .++.++||.         
T Consensus        81 ~~~i~~cl~~-~~~~~~~~~s~~~c~~~~~~~~--------~~~~~----------~~~~--~~~~v~GG~~~~~~~l~~  139 (194)
T smart00457       81 SEDISTCLGG-SSNSFAGSVSAEHCLQFSSYSK--------YLSTS----------LRRL--SHTQVLGGHVTVLCDLLR  139 (194)
T ss_pred             HHHHHhhhce-eeeEEEEeecCceecccccccc--------ccccc----------ccce--eeEEEeCCchHHHHHHhc
Confidence            9999999997 334443 223345655221110        01111          0123  345567773         


Q ss_pred             ---CCCcccHHHHHhhccCCCCeEEeeccccccccCCCc---hhhHHHHHHHHHH
Q 007385          270 ---DNRNLSHNEWLHTVQFEPDVTSMSFIPITSLLNGVP---GSGFLSHAINLYL  318 (605)
Q Consensus       270 ---~~~~l~yseWl~SVk~nPdVIs~kL~PI~eLL~~vp---kr~nLkrAIeeYL  318 (605)
                         .+.. .|++|++||+.+|++|++++.|||+||++.|   ++++|++||++||
T Consensus       140 ~~~~~~~-~~~~W~~sv~~~p~~I~~~l~Pi~~lv~~~~~~~~~~~l~~Al~~Yl  193 (194)
T smart00457      140 GPSTNSL-DFSDWAESVPNEPVLIDVSLAPIYELLPPNPLSQKREALRQALRSYL  193 (194)
T ss_pred             CCCCChH-HHHHHHHHhhhCCceeEEeeEEHHHHhcCcchHHHHHHHHHHHHHHh
Confidence               2345 7999999999999999999999999999986   9999999999998

>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants Back     alignment and domain information
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query605
2qp2_A511 Unknown protein; toxin, unknown function; 2.00A {P 2e-36
2rd7_A367 Complement component C8 alpha chain; membrane atta 3e-29
3nsj_A540 Perforin-1; pore forming protein, immune system; H 7e-14
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 4e-07
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 7e-07
3kk7_A541 Putative cell invasion protein with MAC/perforin; 4e-06
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} Length = 511 Back     alignment and structure
 Score =  141 bits (356), Expect = 2e-36
 Identities = 46/334 (13%), Positives = 95/334 (28%), Gaps = 19/334 (5%)

Query: 14  AIGSIGRGYDI-AIDLRLKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDK 72
               IG  YD+      +  C   L D R I   +D  +++ + G      V   I C  
Sbjct: 41  GAEMIGTSYDVFGKYCNVGSCMNSLFDERKINASEDNFKKVTILG--KTLKVPYYIDCYS 98

Query: 73  GERTRFRSDVL-SFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAANTKTLAFDG 131
               ++ +    S +      + +  + G      F+A  +    +  D+      AF  
Sbjct: 99  VGDLKYTNASGESIESYQSNISSKSRIKGN--YLFFSASLKVD--FDTDSLTDFENAFSR 154

Query: 132 M--FISLYSVAL--EKSQMVLRDRVKKAVPATWEPAALASFIETYGTHIIVGVRMGGKDV 187
           +     LY +    E  +  L++ VK A+        +     T+G+H + GV MGG   
Sbjct: 155 IQYTYDLYILKSSAEALKEFLKESVKTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQ 214

Query: 188 IYVKQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQNDKFDIREQRLRFADT 247
                   ++                    +    +   E + +         +      
Sbjct: 215 YSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRS--ASNIKTHAIGG 272

Query: 248 SPSSSYSYKEDMVCICKRRGGSDNRNLSHNEWLHTVQFEPDV----TSMSFIPITSLL-N 302
             S    +                   +  +W  +V   P++     S     I  L  +
Sbjct: 273 DLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSD 332

Query: 303 GVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLP 336
               +    H   ++   +     +H     ++ 
Sbjct: 333 RTQKAKLKKHFETVWAPAESAKRRVHADYIDEII 366
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A Length = 367 Back     alignment and structure
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 537 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} Length = 541 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query605
3nsj_A540 Perforin-1; pore forming protein, immune system; H 100.0
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 100.0
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 100.0
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 100.0
2rd7_A367 Complement component C8 alpha chain; membrane atta 100.0
2qp2_A511 Unknown protein; toxin, unknown function; 2.00A {P 100.0
3kk7_A541 Putative cell invasion protein with MAC/perforin; 99.28
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=7.6e-43  Score=385.53  Aligned_cols=299  Identities=19%  Similarity=0.223  Sum_probs=223.4

Q ss_pred             HHHhhccceeeccc-chhh------hcccCCCCC-cceEEecC-CCceeEEcCCCeeecCCCCC-ccccccceeE-Eeec
Q 007385           13 VAIGSIGRGYDIAI-DLRL------KYCKGDLKD-SRLIEIDK-DGGREIVLPGGISIPNVSKS-IKCDKGERTR-FRSD   81 (605)
Q Consensus        13 ~ai~~lG~G~Dlt~-D~rl------~~cK~~~~~-srli~id~-~~~r~l~~Pgg~~v~~v~~~-ikCdk~~s~~-~~Sd   81 (605)
                      .+++.+|.|||+.. +.|-      +|..+ ..| -+++. +. ....-.-+|..+.  +.-.+ ++|++..+.. |.|.
T Consensus        18 Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~-~~G~C~~c~-~~~~~~~~~RlP~nv~--~~~~~~~~~~~~~s~e~y~s~   93 (540)
T 3nsj_A           18 PGVWMAGEGMDVTTLRRSGSFPVNTQRFLR-PDRTCTLCK-NSLMRDATQRLPVAIT--HWRPHSSHCQRNVAAAKVHST   93 (540)
T ss_dssp             TTGGGTTCEEETTTTEECSCCSBCCCCCSC-TTSCEEEEE-ETTTTTEEEEECTTEE--EEEECCSCCCCCCEEEEECSH
T ss_pred             CChHHhcCCEEEecCcccCCEeEechhccC-CCCeeeEec-ccccCCceeeccceee--eEEEEEeeeeeeechhhcccH
Confidence            46899999999987 4433      34431 002 12333 11 1223478898753  12345 8899995555 4555


Q ss_pred             HhhHHHHHHhcccceecccccC-CcceeEEEEEcceeehhh--ccc------eeeeEeeEEEEEEEEEEcCCCCCCchhH
Q 007385           82 VLSFQQMSEQFNQELSLTGKIP-SGLFNAMFEFSGYWQKDA--ANT------KTLAFDGMFISLYSVALEKSQMVLRDRV  152 (605)
Q Consensus        82 v~~f~qmse~fn~~~sl~gkIp-sg~fna~f~~sGs~skdA--a~t------Ksla~dg~~I~ly~frL~~~~L~LseeF  152 (605)
                      +..++++++...++|+++++|| .+.++++++++|++++.+  +++      .+|..+...|++|+|+|+. +++|+++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~-~~~L~~~F  172 (540)
T 3nsj_A           94 EGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQ-KPPLHLDF  172 (540)
T ss_dssp             HHHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBCTTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECS-SCCBCHHH
T ss_pred             HHHHHHHhhhcccccceeeecccccccceeEEeecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCC-CCCCCHHH
Confidence            6668889999999999999998 334456677888887665  222      2377778899999999985 78999999


Q ss_pred             hc---cCCCCCCh---HHHHHHHhccceEEEEceEecCE-EEE-EEee--hhcCCCCHHHHHHHHHhhcCeeEe-cc---
Q 007385          153 KK---AVPATWEP---AALASFIETYGTHIIVGVRMGGK-DVI-YVKQ--KHSSTLQPADVQKRLKEMADKRFL-DA---  218 (605)
Q Consensus       153 ~k---~LPs~Yd~---~aYa~FIe~YGTHYItsgtLGGk-dvi-yVrq--~ksSglT~~EVk~CL~~~a~~~F~-~~---  218 (605)
                      ++   +||..||+   ++|++||++||||||++++|||+ +++ ++++  ++.+++|.+||++||+.++++++. ..   
T Consensus       173 ~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~  252 (540)
T 3nsj_A          173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVS  252 (540)
T ss_dssp             HHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeec
Confidence            94   79999999   99999999999999999999999 676 5565  678899999999999988866552 11   


Q ss_pred             -cCcccccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEeecCCC------------CCcccHHHHHhhccC
Q 007385          219 -NGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSD------------NRNLSHNEWLHTVQF  285 (605)
Q Consensus       219 -~~~sc~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~~------------~~~l~yseWl~SVk~  285 (605)
                       ....|.+..+        +...+..|        ....+|  +++.||||..            +++ .|++|++||++
T Consensus       253 ~~~~~C~~~~~--------~~~~~~~~--------~~~~~~--~~~~V~GG~~~~~~~L~~~~~~~p~-~~~~W~~Sv~~  313 (540)
T 3nsj_A          253 SEYKACEEKKK--------QHKMATSF--------HQTYRE--RHVEVLGGPLDSTHDLLFGNQATPE-QFSTWTASLPS  313 (540)
T ss_dssp             HHHHHHHHHHH--------HTTCSSCH--------HHHCCC--EEEEEESSCGGGCCCSSSCSSCCHH-HHHHHHHHTTT
T ss_pred             ccccccccccc--------cccccCCc--------ccccce--EEEEEeCCCccchhhhhcccCCCHH-HHHHHHHHHhh
Confidence             1233444222        11122222        333478  8899999953            445 79999999999


Q ss_pred             CCCeEEeeccccccccC-CCchhhHHHHHHHHHHhcCCChhhhhhhhhhcCcc-cee-ccccCCCC
Q 007385          286 EPDVTSMSFIPITSLLN-GVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPR-QWA-PVFSELPL  348 (605)
Q Consensus       286 nPdVIs~kL~PI~eLL~-~vpkr~nLkrAIeeYL~ykp~ie~l~~flEfq~pc-~ca-Pc~n~l~l  348 (605)
                      +|+||+|+|.|||+||+ ..++|+|||+||++||.            || +|| +|+ ||+||.+.
T Consensus       314 ~P~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~------------e~-~~c~~C~~PC~nn~~~  366 (540)
T 3nsj_A          314 NPGLVDYSLEPLHTLLEEQNPKREALRQAISHYIM------------SR-ARWQNCSRPCRSGQHK  366 (540)
T ss_dssp             SCEEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHH------------HT-CBCCCTTSCCBTTEEE
T ss_pred             CCceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHH------------hc-CchhhhcccccCCCcc
Confidence            99999999999999998 46799999999999995            99 999 997 99999753
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A Back     alignment and structure
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} Back     alignment and structure
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00