Citrus Sinensis ID: 007405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-----
Protein Sequence
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccHHHHHcccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEccEEcccccccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccHHHccHHHHccccccccccccccccccccccEEccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccHHccccccccccccccEEHcHEEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mgsreikspeslqetpatssshqrkKLSVYFIESDNrrmalgrgytggttpvnvhgkpiadlsktggWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVrlvpipacTIMLNVILTEFLTLSVQQAYTMNthmgklklpvtchprgasqLQRVGIGLAVSILSVIWAGIFERYRRNYAIshgyefsfltampdlSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSvtgnpkkgqpnwlaqnintgRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Flexible Loop (DISEMBL)
mgsreikspeslqetpatssshqrkkLSVYFIESDNRRMALGRgytggttpvnvhgkpiadlsktGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVtgnpkkgqpnWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Low Complexity Region (SEG)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIgsayaalagglgcfaasILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered region (IsUnstruct)
***************************SVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR*********************
Disordered Region (DISOPRED)
*************************************************TPVNVHGKPI*****TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD************KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER*****THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI***********************FRCLD****************KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK***********************
Disordered Region (DISEMBL)
************************KKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered Region (DISPRO)
************************************************TTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS***GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	605	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.963	0.934	0.771	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.856	0.908	0.408	1e-121
Q9LFB8	570	Peptide transporter PTR5	no	no	0.864	0.917	0.400	1e-113
P46032	585	Peptide transporter PTR2	no	no	0.859	0.888	0.392	1e-109
Q93Z20	590	Probable peptide/nitrate	no	no	0.854	0.876	0.387	1e-105
Q84WG0	545	Probable peptide/nitrate	no	no	0.795	0.882	0.355	2e-92
Q9SX20	596	Probable nitrite transpor	no	no	0.866	0.879	0.351	3e-90
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.866	0.908	0.363	7e-89
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.899	0.934	0.346	3e-88
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.904	0.933	0.341	3e-88

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/614 (77%), Positives = 530/614 (86%), Gaps = 31/614 (5%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC- 419
           WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTC 
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query: 420 ----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIFERYR 451
                                       +P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query: 452 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 511
           R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 512 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 571
           AYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query: 572 CAFLYSAYRYKYRS 585
           C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/566 (40%), Positives = 335/566 (59%), Gaps = 48/566 (8%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  A ++N V
Sbjct: 13  VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P   N D 
Sbjct: 72  TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E 
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302

Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V Q  TM+ 
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362

Query: 409 HMGK------------------------------LKLPVTCHPRGASQLQRVGIGLAVSI 438
           HMGK                              L    T + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422

Query: 439 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 498
            ++I AG+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  +G LEF 
Sbjct: 423 FAMITAGVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFF 479

Query: 499 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 558
           Y++APDAM+S+ SA +     LG + +++L +++  +T   K G+P W+  N+N G  DY
Sbjct: 480 YDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDY 537

Query: 559 LYWLLAVLSVINFCAFLYSAYRYKYR 584
            ++LLA LS +NF  +L+ + RYKY+
Sbjct: 538 FFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/572 (40%), Positives = 328/572 (57%), Gaps = 49/572 (8%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+     +S +V
Sbjct: 14  LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
           +N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P    C  
Sbjct: 73  SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                G    A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E 
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           + D       S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ 
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362

Query: 409 HMG--------------------------KLKLPV----TCHPRGASQLQRVGIGLAVSI 438
           HMG                          KL +P     T H RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422

Query: 439 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 498
            S++ AGI E  R NY  +H     +      ++ +W + QY L+G AEVF  +G LEF 
Sbjct: 423 FSMVSAGILEVARLNYVQTHNL---YNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFF 479

Query: 499 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 558
           Y++APDAM+S+ SA +  A   G + ++ L +++  VT +   G+P W+A+N+N G  DY
Sbjct: 480 YDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLNNGHLDY 537

Query: 559 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 590
            +WLLA LS +NF  +L+ A  Y Y+    H 
Sbjct: 538 FFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/565 (39%), Positives = 324/565 (57%), Gaps = 45/565 (7%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct: 30  VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct: 89  TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
           I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query: 409 HMGKLKLP-----------------------------VTCHPRGASQLQRVGIGLAVSIL 439
            +G  +LP                              T   +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 440 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 499
            +  A I E  R + A   G   S   A   +S  W + QY ++G AEVF  +G LEF Y
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVES--GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query: 500 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYL 559
           +++PDAM+S+ SA A L   LG + +S++ +++   T   + GQ  W++ N+N+G  DY 
Sbjct: 499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYF 556

Query: 560 YWLLAVLSVINFCAFLYSAYRYKYR 584
           +WLLA LS++N   + +SA RYK +
Sbjct: 557 FWLLAGLSLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 320/571 (56%), Gaps = 54/571 (9%)

Query: 33  ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
           E +N    L      G+  ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct: 24  EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query: 93  VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
           +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct: 81  ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
           +TL A++ V  P              C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
           ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
              FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315

Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
            KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A  I+ 
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374

Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLP-----------------------------VTC 419
           +V+ ++  TL VQQ  +MN  +   ++P                              T 
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434

Query: 420 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 479
            P+G + LQR+GIGL +S+LS+  A I E  R   A           AM   S +W + Q
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD-------FVAM---SIFWQIPQ 484

Query: 480 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 539
           Y L+GIAEVF  +G +EF Y+E+PDAM+S+ SA A L   +G + +S++ +++   T   
Sbjct: 485 YILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA-- 542

Query: 540 KKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 570
             G+  W+  ++N G  DY +WLL  L ++N
Sbjct: 543 LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  340 bits (873), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 301/563 (53%), Gaps = 82/563 (14%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++HG P      TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct: 31  IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P       
Sbjct: 90  MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142

Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
            ++ +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
           FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
           SP+T V QVLVAA+RK +            +VP   +                       
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVPEDST----------------------- 287

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
             E   N +PWKLCTVTQVEEVK L+RLVPI A  I+ +V+ ++  TL VQQ   M   +
Sbjct: 288 -DEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346

Query: 411 GKLKLP-----------------------------VTCHPRGASQLQRVGIGLAVSILSV 441
           G  ++P                              T   +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406

Query: 442 IWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE 501
            +A I E  R   A     +      +  L+ +W + QY L+G A VF  VG +EF YE+
Sbjct: 407 TFAAIVETVRLQLA--RDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQ 464

Query: 502 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLY 560
           +PD+M+S+ SA+A L   LG + +S++ +++  ++     G+  W+ + NIN G  DY +
Sbjct: 465 SPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNINNGHLDYFF 519

Query: 561 WLLAVLSVINFCAFLYSAYRYKY 583
           WLL  L  +N   F++ + +Y +
Sbjct: 520 WLLVSLGSVNIPVFVFFSVKYTH 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  333 bits (853), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 303/572 (52%), Gaps = 48/572 (8%)

Query: 53  NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
            +HG+P       GG I   FIF NE+ E++A  G   NM++++   +H     ++N + 
Sbjct: 15  QLHGRPN---RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
           NF G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + +
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
                 C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN
Sbjct: 132 ------CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN 185

Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSP 292
           ++Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245

Query: 293 LTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK 352
            TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +
Sbjct: 246 FTRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE 304

Query: 353 EDVIN----PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           ED +     P+ W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN 
Sbjct: 305 EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNR 364

Query: 409 HM-GKLKLPV-----------------------------TCHPRGASQLQRVGIGLAVSI 438
           H+    ++P                              T   RG + L R+GIG  +SI
Sbjct: 365 HLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISI 424

Query: 439 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 498
           ++ + AG  E  R++ AI HG      T +P +S  WL+ QY L G+AE F  +G LEF 
Sbjct: 425 IATLVAGFVEVKRKSVAIEHGLLDKPHTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFF 483

Query: 499 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFD 557
           Y++AP++M+S  +A   +A  +G + +++L +++   +  P     NWL   N+N GR +
Sbjct: 484 YDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLE 541

Query: 558 YLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 589
           Y YWL+ VL  +N   +L+ A  Y Y+  Q H
Sbjct: 542 YFYWLITVLQAVNLVYYLWCAKIYTYKPVQVH 573

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  328 bits (842), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 315/586 (53%), Gaps = 62/586 (10%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct: 13  VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            +F+G S    +LGGFLAD++LGR+ TI IF+TI   G   + +   +    P    C  
Sbjct: 72  TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+ ++ QV+ AAFRKR      S ++ LYE       I    +I HTD F  LDKAA+  
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298

Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
           + D       V  P+PWKL +VT+VEEVK +VRL+PI A TI+      + +T SV+QA 
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query: 405 TMNTHMGKLKLP---------------VTCHPR-------------GASQLQRVGIGLAV 436
           TM  ++G  K+P               +  + R             G S LQR+ IGL +
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVL 418

Query: 437 SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLE 496
           S   +  A + E+ R + A S   +      +P +S + L+ Q+ L+G  E F   G L+
Sbjct: 419 STAGMAAAALVEQKRLSVAKSSSQK-----TLP-ISVFLLVPQFFLVGAGEAFIYTGQLD 472

Query: 497 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRF 556
           F   ++P  MK++ +        LG F +S L SI+K VT         WLA NIN GR 
Sbjct: 473 FFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNINHGRL 530

Query: 557 DYLYWLLAVLSVINF-----CAFLYSAYRYKYRSEQKHGNDYEVME 597
           DY YWLL +LS INF     CA  +   + K   E+++G  + V +
Sbjct: 531 DYFYWLLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSVED 576

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  326 bits (836), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 204/589 (34%), Positives = 313/589 (53%), Gaps = 45/589 (7%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct: 6   VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           P YRH+LP GSP T++A+V+VA+FRK +A   + ++   +E+P      KG+  I  T  
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
            R LD+A+L+   +      W LCT T+VEE K ++R++P+   T + +++L +  TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354

Query: 401 QQAYTMNTHM-GKLKLP-----------------------------VTCHPRGASQLQRV 430
           +Q  T++  + G   +P                              T +PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414

Query: 431 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFC 490
           GIGL   IL +I A + ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F 
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFL 473

Query: 491 IVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 550
            V  LEF Y++AP++MKS+G++Y+  +  +G F +S L S +  +T   KK    W+  N
Sbjct: 474 EVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEIT---KKRGRGWILNN 530

Query: 551 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 599
           +N  R DY Y   AVL+++NF  FL     Y YR+E     D + +E K
Sbjct: 531 LNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  326 bits (836), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 203/594 (34%), Positives = 320/594 (53%), Gaps = 47/594 (7%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct: 6   VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
            LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
            R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354

Query: 401 QQAYTMNTHMG------------------------------KLKLPVTCHPRGASQLQRV 430
           +Q  T++  +                               K    +T +PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414

Query: 431 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP-DLSAYWLLIQYCLIGIAEVF 489
           GIG+ + IL +I A I ERYR   A  HG   +  TA+P  LS + LL QY L+G+A+ F
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPIPLSIFTLLPQYVLMGLADAF 472

Query: 490 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 549
             +  LEF Y++AP++MKS+G++Y + +  +G F +SIL S +  +T    +G   W+  
Sbjct: 473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG---WIQN 529

Query: 550 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS 603
           N+N  R D  Y   AVL+++NF  FL     Y+YR++     + E  E  + D+
Sbjct: 530 NLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKEPNMVDN 583

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	605
224053581	638	predicted protein [Populus trichocarpa]	0.988	0.937	0.813	0.0
225425292	640	PREDICTED: probable peptide/nitrate tran	0.990	0.935	0.778	0.0
449468910	637	PREDICTED: probable peptide/nitrate tran	0.991	0.941	0.770	0.0
356569101	631	PREDICTED: probable peptide/nitrate tran	0.973	0.933	0.781	0.0
357501519	638	Peptide transporter-like protein [Medica	0.973	0.923	0.762	0.0
147771745	612	hypothetical protein VITISV_040927 [Viti	0.953	0.942	0.774	0.0
147866216	626	hypothetical protein VITISV_008303 [Viti	0.970	0.937	0.767	0.0
297811451	625	proton-dependent oligopeptide transport	0.963	0.932	0.775	0.0
15240621	624	putative peptide/nitrate transporter [Ar	0.963	0.934	0.771	0.0
296085541	606	unnamed protein product [Vitis vinifera]	0.933	0.932	0.734	0.0

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/632 (81%), Positives = 554/632 (87%), Gaps = 34/632 (5%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           MGS EIKSPE L ETPAT    S+    KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1   MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F  SSNAVNNFLG
Sbjct: 61  KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q  CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
           +PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+G LKLP
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420

Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIF 447
           VT                              HPRGASQLQRVGIGLA SILSV WA IF
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480

Query: 448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 507
           ERYRR YAI HGYEFSFLT MP+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540

Query: 508 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 567
           SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINTGRF+Y YWLL VLS
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINTGRFEYFYWLLTVLS 600

Query: 568 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 599
            INFCAFLYSA RYKYR+EQK G   EV+ NK
Sbjct: 601 AINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/632 (77%), Positives = 542/632 (85%), Gaps = 33/632 (5%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420

Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIF 447
           VTC                             HP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480

Query: 448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 507
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540

Query: 508 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 567
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 600

Query: 568 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 599
           VINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 601 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/637 (77%), Positives = 544/637 (85%), Gaps = 37/637 (5%)

Query: 1   MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
           MGSREIKS   + ETP        S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1   MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60

Query: 55  HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
            GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH  F  SS+AVNNF
Sbjct: 61  RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120

Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
           LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+  F+PNQ  CD++S 
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180

Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
           LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240

Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
           YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300

Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
           RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360

Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 414
             NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G+LK
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420

Query: 415 LPVTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWAG 445
           LPVTC                             HP GASQLQRVGIGLA+SILSV WAG
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480

Query: 446 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 505
            FERYRRN+AI  GYE SFL+ MP+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540

Query: 506 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 565
           MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P    P+WL+QNINTGRFDY YWLL V
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINTGRFDYFYWLLTV 600

Query: 566 LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 602
           +S+INFC FLYSA++YKYR + + G    +MEN ++D
Sbjct: 601 MSIINFCIFLYSAHKYKYRKDHEVGEG--IMENGMHD 635

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/618 (78%), Positives = 529/618 (85%), Gaps = 29/618 (4%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M S EIKSP    +     +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I 
Sbjct: 1   MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+  F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED  NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC- 419
           W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G+LKLPVTC 
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420

Query: 420 ----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIFERYR 451
                                       HP GASQLQRVGIGLAVSILSV WA IFERYR
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480

Query: 452 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 511
           RNYAI HGY  SFLTAMP+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 512 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 571
           AYAALAGGLGCF A+I+N+IIKS TGN  KGQP+WL+QNINTGRFDY YWLL  LS+INF
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINTGRFDYFYWLLTALSIINF 600

Query: 572 CAFLYSAYRYKYRSEQKH 589
             F+YSA+RYKYR  Q H
Sbjct: 601 AIFVYSAHRYKYREHQVH 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/628 (76%), Positives = 536/628 (85%), Gaps = 39/628 (6%)

Query: 1   MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
           M + EIKSPE+ Q+ TP TS S  RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1   MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58

Query: 60  ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
            DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59  EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118

Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAA+RKR  +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D  NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358

Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
            W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+GKLKLPVTC
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418

Query: 420 -----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIFERY 450
                                        HP GASQLQR+GIGL VSILSV WA IFE+Y
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478

Query: 451 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 510
           RRNYAI + +E SFLT MP+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538

Query: 511 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 570
           SAYAALAGGLGCF A+ +NS++KS TGN  K Q +WL+QNINTG+FDY YW+L  LS++N
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVN 598

Query: 571 FCAFLYSAYRYKYRSEQ-------KHGN 591
           FC FLYSA+RYKYR++        KH N
Sbjct: 599 FCIFLYSAHRYKYRTQHVYEMESIKHDN 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score =  993 bits (2566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/620 (77%), Positives = 528/620 (85%), Gaps = 43/620 (6%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR          +D  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410

Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIF 447
           VTC                             HP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470

Query: 448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 507
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530

Query: 508 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 567
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 590

Query: 568 VINFCAFLYSAYRYKYRSEQ 587
           VINFC FLYSA RYKYR+ Q
Sbjct: 591 VINFCIFLYSAQRYKYRAFQ 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/627 (76%), Positives = 530/627 (84%), Gaps = 40/627 (6%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DL K        +  GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413

Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIF 447
           VTC                             HP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473

Query: 448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 507
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533

Query: 508 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 567
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 593

Query: 568 VINFCAFLYSAYRYKYRSEQKHGNDYE 594
           VINFC FLYSA RYKYR  Q+   + E
Sbjct: 594 VINFCIFLYSAQRYKYRVAQEGTMEEE 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/615 (77%), Positives = 532/615 (86%), Gaps = 32/615 (5%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           SSVLGGFLADAYLGRYWTIAIFTT+YL   L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+DDF  LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360

Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
           PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTC
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420

Query: 420 -----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIFERY 450
                                        +P GASQLQRVGIGLAVSI+SV WAG+FE Y
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480

Query: 451 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 510
           RR+YAI HG+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540

Query: 511 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 570
           SAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +N
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLN 598

Query: 571 FCAFLYSAYRYKYRS 585
           FC FL+SA+RYKYR+
Sbjct: 599 FCVFLWSAHRYKYRA 613

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/614 (77%), Positives = 530/614 (86%), Gaps = 31/614 (5%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC- 419
           WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTC 
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query: 420 ----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIFERYR 451
                                       +P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query: 452 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 511
           R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 512 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 571
           AYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query: 572 CAFLYSAYRYKYRS 585
           C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/632 (73%), Positives = 512/632 (81%), Gaps = 67/632 (10%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420

Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWAGIF 447
           VTC                             HP GASQLQRVGIGLAVSILSV WAG  
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAG-- 478

Query: 448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 507
                                           YCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 479 --------------------------------YCLIGIAEVFCIVGLLEFLYEEAPDAMR 506

Query: 508 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 567
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 507 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 566

Query: 568 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 599
           VINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 567 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	605
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.695	0.674	0.821	3.3e-250
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.596	0.633	0.436	6.2e-112
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.595	0.631	0.422	2.4e-106
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.588	0.608	0.423	4.1e-102
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.621	0.637	0.422	1.1e-99
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.580	0.608	0.411	1.5e-89
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.649	0.670	0.343	6.3e-89
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.583	0.592	0.377	1.5e-87
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.585	0.6	0.394	1.7e-84
TAIR|locus:2033776	614	NRT1.5 "nitrate transporter 1.	0.679	0.669	0.331	8.3e-83

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1825 (647.5 bits), Expect = 3.3e-250, Sum P(2) = 3.3e-250
 Identities = 346/421 (82%), Positives = 382/421 (90%)

Query:     1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
             M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct:     1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query:    61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
             +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct:    61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query:   121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
             SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct:   121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query:   181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
              AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct:   181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query:   241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
             GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct:   241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query:   301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
             VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct:   301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query:   361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCH 420
             WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTC 
Sbjct:   361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query:   421 P 421
             P
Sbjct:   421 P 421

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
 Identities = 164/376 (43%), Positives = 233/376 (61%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  
Sbjct:     7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
             A ++N V N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P
Sbjct:    65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                N D       +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K
Sbjct:   125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295

Query:   345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
             DKAA+E + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V 
Sbjct:   296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355

Query:   402 QAYTMNTHMGK-LKLP 416
             Q  TM+ HMGK  ++P
Sbjct:   356 QGNTMDQHMGKNFEIP 371

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 159/376 (42%), Positives = 225/376 (59%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+   
Sbjct:     8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
               +S +V+N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P
Sbjct:    66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                 C        +C  A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K
Sbjct:   126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295

Query:   345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
             DKAA+E + D       S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V 
Sbjct:   296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355

Query:   402 QAYTMNTHMG-KLKLP 416
             Q  T++ HMG   K+P
Sbjct:   356 QGNTLDQHMGPNFKIP 371

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
 Identities = 156/368 (42%), Positives = 222/368 (60%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct:    30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct:    89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
             I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct:   145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct:   202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct:   262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
             +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   409 HMGKLKLP 416
              +G  +LP
Sbjct:   381 KIGSFQLP 388

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
 Identities = 164/388 (42%), Positives = 234/388 (60%)

Query:    33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
             E  N  +  G   T     ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct:    23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query:    93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
             +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct:    81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query:   153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
             +TL A++ V  P    C  ++  L  C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct:   141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query:   213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
             ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct:   197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query:   273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
                FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct:   257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315

Query:   333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
              KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A  I+ 
Sbjct:   316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374

Query:   389 NVILTEFLTLSVQQAYTMNTHMGKLKLP 416
             +V+ ++  TL VQQ  +MN  +   ++P
Sbjct:   375 SVLYSQISTLFVQQGRSMNRIIRSFEIP 402

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 153/372 (41%), Positives = 222/372 (59%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct:    13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
              +F+G S    +LGGFLAD++LGR+ TI IF+TI   G TG    AT K+       C  
Sbjct:    72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                   +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct:   130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct:   186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+ ++ QV+ AAFRKR      S ++ LYE       I+    I HTD F  LDKAA+  
Sbjct:   246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298

Query:   352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
             + D       V  P+PWKL +VT+VEEVK +VRL+PI A TI+      + +T SV+QA 
Sbjct:   299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query:   405 TMNTHMGKLKLP 416
             TM  ++G  K+P
Sbjct:   359 TMRRNIGSFKIP 370

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
 Identities = 142/413 (34%), Positives = 226/413 (54%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct:     6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct:   124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct:   180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
              LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct:   240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298

Query:   341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
              R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL +
Sbjct:   299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354

Query:   401 QQAYTMNTHM-GKLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 452
             +Q  T++  +     +P    P  AS L      + VSI  VI+  +F ++ R
Sbjct:   355 KQGTTLDRRLTNNFSIP----P--ASLLGFTTFSMLVSI--VIYDRVFVKFMR 399

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 139/368 (37%), Positives = 205/368 (55%)

Query:    54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
             +HG+P  +  K GG I   FIF NE+ E++A  G   NM++++   +H     ++N + N
Sbjct:    16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query:   114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
             F G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + + 
Sbjct:    73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131

Query:   174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
                  C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN+
Sbjct:   132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186

Query:   234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
             +Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP 
Sbjct:   187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246

Query:   294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
             TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +E
Sbjct:   247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305

Query:   354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
             D + P   P  W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN H
Sbjct:   306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365

Query:   410 M-GKLKLP 416
             +    ++P
Sbjct:   366 LTNSFQIP 373

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 145/368 (39%), Positives = 212/368 (57%)

Query:    56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
             G+P AD SKTGGW +A  I   E  ER+   G+ VN+VT++   MH   A ++N V NFL
Sbjct:    20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78

Query:   116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
             G S    +LGGF+AD +LGRY TIAIF  I   G++ +TL   +    P + N    S  
Sbjct:    79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137

Query:   176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
                CE A   Q+  LY  LY+T  G  G++  VS FG+DQFDE     ++ +  FFN F+
Sbjct:   138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194

Query:   236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
               + VG+++A T++VY+Q + G  WG    A AI + +S  +F  GT  YR +   GSP+
Sbjct:   195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252

Query:   294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             T+VA V+VAA+R R     +  S L  + ++     ++KG  K+ HT+ FR LDKAA+  
Sbjct:   253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312

Query:   352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
             +E  +  +    W L T+T VEEVK +VR++PI A  I+   +  +  TLSV Q+ T++ 
Sbjct:   313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372

Query:   409 HMGKLKLP 416
              +G  ++P
Sbjct:   373 SIGSFEIP 380

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 145/437 (33%), Positives = 239/437 (54%)

Query:    27 LSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYF 86
             L +Y    D  +   G   T   T V+ +G+P +  S +G W+A + I  N+    +A+F
Sbjct:     4 LEIY--NKDTMKKKEGEEETRDGT-VDYYGRP-SIRSNSGQWVAGIVILLNQGLATLAFF 59

Query:    87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146
             G+ VN+V F+  V+ ++ AD++N V+ + G     S++G FL+D+Y GRY T AIF  I+
Sbjct:    60 GVGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIF 119

Query:   147 LAGLTGITLCATMKVFMPNQDNC-DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205
             + GL+ ++L + M +  P    C D ++     C      ++   Y  +Y+   G  G +
Sbjct:   120 VIGLSSLSLSSYMFLIRPR--GCGDEVTP----CGSHSMMEITMFYFSIYLIALGYGGYQ 173

Query:   206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 265
             P +++ GADQFDE           FF++FYL++ +G++ + T++ Y + E  W   F A 
Sbjct:   174 PNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWAS 233

Query:   266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR--HAAFSSSELIGLYEVP 323
               +  I  +LF +GTP YR+  P G+PL+R  QVLVAA +K    A     E +   +  
Sbjct:   234 TGSAIIGLILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSE 293

Query:   324 GKHSAIKGSGKIAHTDDFRCLDKAAL-------ELKEDVINPSPWKLCTVTQVEEVKTLV 376
             GK++++    +I HTD+F+ LDKAA        + K+D +NP  W+LC VTQVEEVK ++
Sbjct:   294 GKNASVNTGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNP--WRLCPVTQVEEVKCIL 351

Query:   377 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAV 436
             RL+PI  CTI+ +V+ T+  +L V+Q   MNT +   K+P    P   S    + + L +
Sbjct:   352 RLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTSVSDFKIP----PASMSSFDILSVALFI 407

Query:   437 SILSVIWAGIFERYRRN 453
              +   +   +  R+++N
Sbjct:   408 FLYRRVLEPVANRFKKN 424

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0042128 "nitrate assimilation" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.7719	0.9636	0.9342	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	605
pfam00854	372	pfam00854, PTR2, POT family	4e-54
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	7e-18
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-15
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  188 bits (479), Expect = 4e-54
 Identities = 105/410 (25%), Positives = 169/410 (41%), Gaps = 67/410 (16%)

Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
           + TI + + IY  G   +TL A      P Q                    +   Y  LY
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40

Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
           +   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A  +  Y+Q  
Sbjct: 41  LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97

Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
            G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA + R      
Sbjct: 98  VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157

Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
                LY    K++    S    HT        A + +                 V  ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207

Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL------------KL------ 415
            ++ ++PI A  I+ + + T+  TL V+Q  TM+  +  L             L      
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267

Query: 416 --------PVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 467
                   P+    RG +  QR G+G+ + I++   A I E  R  YA + G      T 
Sbjct: 268 PILDFLVYPLLRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV 327

Query: 468 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 517
              L   W L +  + G+       G LEF  +  P +M S+ +  +A A
Sbjct: 328 P--LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 86.6 bits (215), Expect = 7e-18
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
           IF  E+ ER +Y+G+   ++ +++Y +          ++   + +  +   + ++GG+LA
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG   TI +   +   G   + + +                                
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 79.1 bits (195), Expect = 3e-15
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)

Query: 92  MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
           M T +  Y+++    +   A N    F  +   + ++G  +AD++LG++ TI   + +Y+
Sbjct: 6   MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65

Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
            G    +L A   +  P  D       L+G                L +   G  GI+PC
Sbjct: 66  VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105

Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
           VS+FG DQF+ER    +    RFF+FFY ++  G++ +  +       V     +  +  
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162

Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
           AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 72  LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
           L +F       +    LS  +       +  S + +   V+ F       S+L G+L+D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
           + GR   + +   ++  G   +                            A S  +L + 
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93

Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
             L   G G   + P  ++  A+ F  +         R    F     +GA++   L   
Sbjct: 94  RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145

Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           +    GW   F  LAI   +  +L      L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
           +F  E+ ER +Y+G+   +  ++       F+   +      +  +    + +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
             G   T+          L GI L                   +LG    A S   +Y  
Sbjct: 75  VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103

Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++  L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
              I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 83  MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
           +    L   +  ++   +  S  +    +  F      +  L G L+D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
             ++  GL  +   +                          S  +L +  VL   G G  
Sbjct: 69  LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100

Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
            + P  ++  AD F            R          +GA +   L   +    GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154

Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
             LAI   ++ +L  +  P          P       LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	605
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.98
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK12382	392	putative transporter; Provisional	99.93
PRK10504	471	putative transporter; Provisional	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.92
PRK10054	395	putative transporter; Provisional	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.91
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.91
TIGR00900	365	2A0121 H+ Antiporter protein.	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.91
PRK09874	408	drug efflux system protein MdtG; Provisional	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.9
PRK10642	490	proline/glycine betaine transporter; Provisional	99.9
PRK09705	393	cynX putative cyanate transporter; Provisional	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.9
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
TIGR00891	405	2A0112 putative sialic acid transporter.	99.89
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.89
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.89
PRK03699	394	putative transporter; Provisional	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.88
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.88
PRK09952	438	shikimate transporter; Provisional	99.88
PRK15011	393	sugar efflux transporter B; Provisional	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.88
TIGR00898	505	2A0119 cation transport protein.	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
PRK03633	381	putative MFS family transporter protein; Provision	99.87
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.87
PRK03893	496	putative sialic acid transporter; Provisional	99.87
KOG0569	485	consensus Permease of the major facilitator superf	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.86
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.86
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.86
PRK11043	401	putative transporter; Provisional	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.85
PRK09528	420	lacY galactoside permease; Reviewed	99.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.85
KOG0254	513	consensus Predicted transporter (major facilitator	99.85
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.85
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
PRK10133	438	L-fucose transporter; Provisional	99.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.83
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.83
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.82
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.81
PRK11010	491	ampG muropeptide transporter; Validated	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.78
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.78
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.78
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.77
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.76
PRK11902	402	ampG muropeptide transporter; Reviewed	99.76
TIGR00901	356	2A0125 AmpG-related permease.	99.75
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.71
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.7
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.69
PRK09848	448	glucuronide transporter; Provisional	99.68
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.68
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.67
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.67
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.66
PRK09669	444	putative symporter YagG; Provisional	99.66
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.66
PRK10429	473	melibiose:sodium symporter; Provisional	99.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.64
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.62
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
PTZ00207	591	hypothetical protein; Provisional	99.61
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.6
PF13347	428	MFS_2: MFS/sugar transport protein	99.6
PRK11462	460	putative transporter; Provisional	99.59
TIGR00805	633	oat sodium-independent organic anion transporter.	99.58
KOG2533	495	consensus Permease of the major facilitator superf	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
PRK15011	393	sugar efflux transporter B; Provisional	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.47
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.41
PRK03699	394	putative transporter; Provisional	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.4
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.4
PRK05122	399	major facilitator superfamily transporter; Provisi	99.4
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
COG2211	467	MelB Na+/melibiose symporter and related transport	99.39
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.38
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.37
PRK09705	393	cynX putative cyanate transporter; Provisional	99.36
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.36
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.35
PRK03545	390	putative arabinose transporter; Provisional	99.34
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK03893	496	putative sialic acid transporter; Provisional	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
PRK10489	417	enterobactin exporter EntS; Provisional	99.31
PRK12382	392	putative transporter; Provisional	99.31
PRK09528	420	lacY galactoside permease; Reviewed	99.31
TIGR00891	405	2A0112 putative sialic acid transporter.	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.29
PRK15075	434	citrate-proton symporter; Provisional	99.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.28
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.25
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.22
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.21
KOG2563	480	consensus Permease of the major facilitator superf	99.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.2
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.18
PLN00028	476	nitrate transmembrane transporter; Provisional	99.16
PRK12307	426	putative sialic acid transporter; Provisional	99.14
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.13
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.13
TIGR00900	365	2A0121 H+ Antiporter protein.	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
PRK10091	382	MFS transport protein AraJ; Provisional	99.12
PRK10504	471	putative transporter; Provisional	99.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.08
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.05
TIGR00895	398	2A0115 benzoate transport.	99.05
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.04
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.04
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.04
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.03
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.0
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.99
KOG3626	735	consensus Organic anion transporter [Secondary met	98.98
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
PRK10133	438	L-fucose transporter; Provisional	98.97
PRK10054	395	putative transporter; Provisional	98.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.96
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.94
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.91
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.9
PRK09848	448	glucuronide transporter; Provisional	98.89
KOG0569	485	consensus Permease of the major facilitator superf	98.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.87
TIGR00898	505	2A0119 cation transport protein.	98.87
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.84
PF13347	428	MFS_2: MFS/sugar transport protein	98.84
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.81
TIGR00901	356	2A0125 AmpG-related permease.	98.81
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.79
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.77
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.76
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.75
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.75
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.74
KOG2532	466	consensus Permease of the major facilitator superf	98.74
PRK11043	401	putative transporter; Provisional	98.72
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.67
PRK09669	444	putative symporter YagG; Provisional	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.64
PRK10429	473	melibiose:sodium symporter; Provisional	98.62
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.58
KOG3762	618	consensus Predicted transporter [General function	98.58
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.57
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.56
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.52
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.42
PRK11462	460	putative transporter; Provisional	98.42
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.41
COG0477	338	ProP Permeases of the major facilitator superfamil	98.39
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.36
COG2211	467	MelB Na+/melibiose symporter and related transport	98.33
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.3
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.3
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.28
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.24
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.22
KOG3762	618	consensus Predicted transporter [General function	98.19
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.14
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.11
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.09
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.99
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.99
KOG0254	513	consensus Predicted transporter (major facilitator	97.95
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.92
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.89
PF12832	77	MFS_1_like: MFS_1 like family	97.87
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.78
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.67
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.66
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.63
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.62
TIGR00805	633	oat sodium-independent organic anion transporter.	97.57
PTZ00207	591	hypothetical protein; Provisional	97.43
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.41
KOG2615	451	consensus Permease of the major facilitator superf	97.4
KOG0637	498	consensus Sucrose transporter and related proteins	97.39
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.38
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.32
PRK03612	521	spermidine synthase; Provisional	96.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.91
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.91
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.86
KOG2563	480	consensus Permease of the major facilitator superf	96.85
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.81
KOG3626	735	consensus Organic anion transporter [Secondary met	96.3
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.08
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.98
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.95
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.54
KOG3098	461	consensus Uncharacterized conserved protein [Funct	94.47
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.45
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.96
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.01
KOG3097	390	consensus Predicted membrane protein [Function unk	92.17
KOG3810	433	consensus Micronutrient transporters (folate trans	91.3
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	90.92
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.43
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.58
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.04
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.87
KOG0637	498	consensus Sucrose transporter and related proteins	86.03
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	82.99
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.86
KOG3880	409	consensus Predicted small molecule transporter inv	80.98

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-53  Score=463.79  Aligned_cols=517  Identities=45%  Similarity=0.746  Sum_probs=456.7

Q ss_pred             CccccCCCCccCcc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHH
Q 007405           50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG  126 (605)
Q Consensus        50 ~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G  126 (605)
                      +.+|+++.+. .+.   +++.|++...+++.+.++++++|++..++..|++.++|.+...+...++.|.+.....+++++
T Consensus        16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~   94 (571)
T KOG1237|consen   16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA   94 (571)
T ss_pred             ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence            5567776666 555   789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccch
Q 007405          127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRP  206 (605)
Q Consensus       127 ~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~  206 (605)
                      +++|.|+||++++.++.+++.+|..++++++..+.+.|.  .| ...+...+|+++++.....++.++.+.++|.|+.++
T Consensus        95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~  171 (571)
T KOG1237|consen   95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP  171 (571)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC
Confidence            999999999999999999999999999999998888876  44 111123369999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007405          207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (605)
Q Consensus       207 ~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  286 (605)
                      +..++.+|||+...+.+++++.++|+|+|+..++|..++-.+..|++++.||.+.|.++.+++++++++++...+.|++.
T Consensus       172 ~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~  251 (571)
T KOG1237|consen  172 CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK  251 (571)
T ss_pred             cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee
Confidence            99999999999777777778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccc---cCCCCCCcc
Q 007405          287 LPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWKL  363 (605)
Q Consensus       287 ~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  363 (605)
                      ++.++|+..+.++++++.++++..++..+.. +      +..........+.+..+++|+++.....+   ....++|++
T Consensus       252 ~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~l  324 (571)
T KOG1237|consen  252 KPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRL  324 (571)
T ss_pred             CCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCccC
Confidence            9999999999999999999999887766443 2      01111112233456778888888775432   224578999


Q ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccCCCC-eeeCC-------------------------
Q 007405          364 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPV-------------------------  417 (605)
Q Consensus       364 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~-------------------------  417 (605)
                      |+.+++||.|..++++|+|...+.+++++.|+.+.+++|+..||++.+. +.+|+                         
T Consensus       325 ct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~  404 (571)
T KOG1237|consen  325 CTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPF  404 (571)
T ss_pred             CCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhh
Confidence            9999999999999999999999999999999999999999999999987 98888                         


Q ss_pred             ----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhh
Q 007405          418 ----TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG  493 (605)
Q Consensus       418 ----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~  493 (605)
                          ++...+.+.++|+++|+++..++|...+.+|..|++.+..+     ...+++ +|++|+++||+++|++|++..++
T Consensus       405 ~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~vg  478 (571)
T KOG1237|consen  405 ARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSVG  478 (571)
T ss_pred             hhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence                22335779999999999999999999999999999887651     112356 99999999999999999999999


Q ss_pred             hHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCC-CCCcCcchhHHHHHHHHHHHHHHH
Q 007405          494 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFC  572 (605)
Q Consensus       494 ~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~a~l~~v~~~  572 (605)
                      .+||.++++|++||+.+++++.+..++|++++++++.++...++  +  ..+|++ +++|.+|++++||+++.+..++..
T Consensus       479 ~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~  554 (571)
T KOG1237|consen  479 GLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFL  554 (571)
T ss_pred             hHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999888664  2  468999 999999999999999999999999


Q ss_pred             HHHHHHhhceecccC
Q 007405          573 AFLYSAYRYKYRSEQ  587 (605)
Q Consensus       573 ~~~~~~~~~~~~~~~  587 (605)
                      .+..+.++|+++..+
T Consensus       555 ~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  555 YFLICAKRYDYKDDK  569 (571)
T ss_pred             heEEEEEeeeecccc
Confidence            999999999887654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-38  Score=328.03  Aligned_cols=438  Identities=17%  Similarity=0.250  Sum_probs=331.6

Q ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHH
Q 007405           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW  137 (605)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~  137 (605)
                      ....+++|.++.++.+|++||++|||+...+..|++.+++    ++.+++..+.+.|....++.+.+|||++||++|+|+
T Consensus        14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~   93 (498)
T COG3104          14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR   93 (498)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence            3456689999999999999999999999999999999988    999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (605)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~  217 (605)
                      ++..+.+++++|.+.++.+..                          .....+++++.++++|.|.++++..++++|++|
T Consensus        94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence            999999999999999998620                          245678999999999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccC--CCCCchh-
Q 007405          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLT-  294 (605)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~-  294 (605)
                      +++++    |..+++++|++.|+|+.++|++.+++.+++||+..|.+.++.+.++++.++++++......  +...|+. 
T Consensus       148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~  223 (498)
T COG3104         148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF  223 (498)
T ss_pred             CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence            99876    9999999999999999999999999999999999999999999999999988887665442  2222211 


Q ss_pred             -----HHHHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchh-hHhhhhhcccc-CCCCCCccccch
Q 007405          295 -----RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAALELKEDV-INPSPWKLCTVT  367 (605)
Q Consensus       295 -----~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~  367 (605)
                           ....++.....-. .      .. +.                ..+..+.. ........... ...-.+   .+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~-~------~~-~l----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~  276 (498)
T COG3104         224 NFLLPVLGGLVVMILAAL-L------TL-LL----------------NQNTFSGVLLVISILIAIIYFAEAFRS---PKV  276 (498)
T ss_pred             hhhhhhHHHHHHHHHHHH-H------HH-HH----------------HHHHHHHHHHHHHHHHHHHHHHHHhcc---Ccc
Confidence                 1111111111100 0      00 00                00000000 00000000000 000000   112


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhh-hccCCCCeeeCC-------------------------CCCC
Q 007405          368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPV-------------------------TCHP  421 (605)
Q Consensus       368 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ip~-------------------------~~~~  421 (605)
                      . +|+|+++..+++++..++||+++.|+++.+..++.. .+++..++.+|+                         .+..
T Consensus       277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~  355 (498)
T COG3104         277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN  355 (498)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence            3 788999999999999999999999999988777754 444545677777                         2445


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhh
Q 007405          422 RGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE  501 (605)
Q Consensus       422 ~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~  501 (605)
                      +.++...|++.|+++++++++.+........   ..+         .. .|.+|++++|+++++||.+++|..++++.+.
T Consensus       356 ~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~~---------~~-~s~~~lil~y~l~s~gEL~iSpvGLs~~t~l  422 (498)
T COG3104         356 KQPSTPIKFALGLILAGLGFLILLLAGIWFG---GPS---------GL-VSVWWLVLSYVLQSFGELFISPVGLSMVTKL  422 (498)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHhhc---CCC---------CC-cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence            6789999999999999999998887643311   001         12 7899999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007405          502 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  581 (605)
Q Consensus       502 ~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~  581 (605)
                      +|+++++.++|+|.+....|+.++..+.+.... +.           +..+......+|+.++...++..+......++.
T Consensus       423 aP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~  490 (498)
T COG3104         423 APPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL  490 (498)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999888763110 00           001112234578877777777766666665544


Q ss_pred             e
Q 007405          582 K  582 (605)
Q Consensus       582 ~  582 (605)
                      +
T Consensus       491 ~  491 (498)
T COG3104         491 N  491 (498)
T ss_pred             H
Confidence            4

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.3e-34  Score=315.36  Aligned_cols=446  Identities=12%  Similarity=0.151  Sum_probs=311.7

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHH
Q 007405           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (605)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~  142 (605)
                      ..++|||.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+....++.++++|+++||++||||+++++
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999945999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 007405          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (605)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~  222 (605)
                      .+++.++.++++++..                           ....++++|+++|+|.|...|+..++++|++|+++++
T Consensus        88 ~~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~  140 (489)
T PRK10207         88 AIVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR  140 (489)
T ss_pred             HHHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh
Confidence            9999999999987521                           1234568899999999999999999999999987522


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhHHHHHH
Q 007405          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVL  300 (605)
Q Consensus       223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~  300 (605)
                          |.+.++++|++.|+|+.+||.+++++.++.||++.|++.++.+.++++.+...++.+++.  ++.+++. |..+.+
T Consensus       141 ----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~  215 (489)
T PRK10207        141 ----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLL  215 (489)
T ss_pred             ----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHH
Confidence                688999999999999999999999999999999999998776666666655555444332  2222222 222211


Q ss_pred             HHHHHhhccccCccccccccccCCCcccccCCcccccCCCcch-hhHhhhhhccccCCCCCCccccchhhhhhhhhhhhh
Q 007405          301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV  379 (605)
Q Consensus       301 ~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  379 (605)
                      ............-  .+ . .+              +...... ...........   . .++....++ .++++.+...
T Consensus       216 l~~~~~~~~~~~~--~~-~-~~--------------~~~~~~~~~~~~~~i~~~~---f-~~~~~~~~~-~~r~r~~~~~  272 (489)
T PRK10207        216 LVLLGSVVMIFVC--AW-L-MH--------------NVEVANLVLIVLSIVVTII---F-FREAFKLDK-TGRNKMFVAF  272 (489)
T ss_pred             HHHHHHHHHHHHH--HH-H-Hh--------------hhhHHHHHHHHHHHHHHHH---H-HHHHhcCCH-HHHHHHHHHH
Confidence            1100000000000  00 0 00              0000000 00000000000   0 000001112 3355555666


Q ss_pred             hhhHHHHHHHHHHhhhhhHHHHHHh-hhccCCCCeeeCC-------------------------CCCCCCCChhHHHHHH
Q 007405          380 PIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPV-------------------------TCHPRGASQLQRVGIG  433 (605)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ip~-------------------------~~~~~~~~~~~~i~~G  433 (605)
                      .+++...++|..+.|..+.+..+.. ..+....++.+|+                         +++...+++..|+.+|
T Consensus       273 ~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G  352 (489)
T PRK10207        273 VLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLG  352 (489)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence            6777788999999998776655554 4555555666654                         3344457888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHH
Q 007405          434 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY  513 (605)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~  513 (605)
                      +++.+++++.++..+...   ...+         .. .+.+|+++.+++.|+||++.+|..++++.+.+|++++|.++|+
T Consensus       353 ~~l~~~~~~~~~~~~~~~---~~~~---------~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~  419 (489)
T PRK10207        353 MFLCSLGFLTAAAAGMWF---ADAQ---------GL-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGM  419 (489)
T ss_pred             HHHHHHHHHHHHHHHHhh---cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHH
Confidence            999999987765432110   0000         12 5789999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceec
Q 007405          514 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  584 (605)
Q Consensus       514 ~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  584 (605)
                      +++.+++|+.++..+...... ..   ......    ....++..+|..+++.+++..++++++.++.++.
T Consensus       420 ~~l~~~ig~~lg~~l~~~~~~-~~---~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        420 WFLTQAAAFLLGGYVATFTAV-PD---NITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cc---ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988875431 00   000000    0112356678888888888777777776665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.1e-34  Score=313.60  Aligned_cols=429  Identities=14%  Similarity=0.147  Sum_probs=310.1

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~  141 (605)
                      ..++++.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++.+++++++|+++||++|||+++++
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            346778899999999999999999999999999988  999999999999999999999999999999994499999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 007405          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~  221 (605)
                      +.+++.++.++++++                            .+...+++++++.|+|.|...++..++++|++|+++.
T Consensus        85 ~~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~  136 (475)
T TIGR00924        85 GGIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM  136 (475)
T ss_pred             HHHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc
Confidence            999999999888875                            3456778899999999999999999999999987642


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHH-----
Q 007405          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-----  296 (605)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----  296 (605)
                      +   .|+++++++|++.|+|+.+||.+++++.++.||++.|++.++.++++++.+...++.+++.++++++....     
T Consensus       137 ~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (475)
T TIGR00924       137 P---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG  213 (475)
T ss_pred             c---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhH
Confidence            1   18889999999999999999999999999999999999988777777666665555544332222211100     


Q ss_pred             HH--H----HHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhh
Q 007405          297 AQ--V----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE  370 (605)
Q Consensus       297 ~~--v----~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (605)
                      .+  .    +....+...          ...+  ...    ...+.     ............... .+|    ..++ .
T Consensus       214 ~~~~~~~~~~~~~~~~~~----------~~~~--~~~----~~~~~-----~~~~~~~~~~~~~~~-~~~----~~~~-~  266 (475)
T TIGR00924       214 KLLLALLAALALVFFCAW----------LMHH--VVI----ANILL-----MTVTLAVIIFFFRLA-FKP----RLDA-V  266 (475)
T ss_pred             HHHHHHHHHHHHHHHHHH----------HHhc--cHH----HHHHH-----HHHHHHHHHHHHHHH-Hhc----cCCH-H
Confidence            00  0    000001000          0000  000    00000     000000000000000 001    0112 2


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhhhhhHHHH-HHhhhccCCCCeeeCC-------------------------CCCCCCC
Q 007405          371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQ-QAYTMNTHMGKLKLPV-------------------------TCHPRGA  424 (605)
Q Consensus       371 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~-------------------------~~~~~~~  424 (605)
                      ++++....+++++...++|+.+.|+.+.+.. +...+|....++.+|+                         +++.+.+
T Consensus       267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~  346 (475)
T TIGR00924       267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP  346 (475)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3344456788889999999999999986544 4455677766777766                         2222446


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcch
Q 007405          425 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  504 (605)
Q Consensus       425 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~  504 (605)
                      +...|+.+|+++.+++++.+++....    ..         .+.+ .+++|+++++++.++||.+..|..++++.+.+|+
T Consensus       347 ~~~~k~~~G~~l~~~~~~~~~~~~~~----~~---------~~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~  412 (475)
T TIGR00924       347 TTPLKFTLGMLFCGASFLTFAASIWF----AD---------AGGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ  412 (475)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhh----cC---------CCCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence            77778999999999999888765211    10         0123 7899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhce
Q 007405          505 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  582 (605)
Q Consensus       505 ~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~  582 (605)
                      ++||+++|++.+...+|+.+++.+........        +|          ..+|..++++.++..+++++..++.+
T Consensus       413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--------GV----------TGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ch----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887654311        23          35677777777777777766665544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=3.3e-33  Score=300.31  Aligned_cols=445  Identities=14%  Similarity=0.177  Sum_probs=308.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      +|++.++.++..++++++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+++....                           .+...++++..+.++|.|...++..++++|+||+++++   
T Consensus        86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~---  135 (493)
T PRK15462         86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR---  135 (493)
T ss_pred             HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence            999887665421                           11233455556677888888899999999999987422   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccC-CCCCchh--HHH----H
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLT--RVA----Q  298 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~--~~~----~  298 (605)
                       |.++++++|...|+|+.++|.+++++.+.+||++.|.+.++.++++++.++..++.+.+.. ...+|..  +..    .
T Consensus       136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  214 (493)
T PRK15462        136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG  214 (493)
T ss_pred             -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence             9999999999999999999999999999999999999988877777777666554433211 0111111  100    0


Q ss_pred             HHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchh-hHhhhhhccccCCCCCCccccchhhhhhhhhhh
Q 007405          299 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAALELKEDVINPSPWKLCTVTQVEEVKTLVR  377 (605)
Q Consensus       299 v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  377 (605)
                      .+....--.    +    . +...           .+.+. ..... -........-..  ...  ......+|+|++..
T Consensus       215 ~~~~~~~~~----~----~-~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~er~r~~~  269 (493)
T PRK15462        215 WLLVLLVAT----P----A-LITV-----------LFWKE-WSVYALIVATIIGLGVLA--KIY--RKAENQKQRKELGL  269 (493)
T ss_pred             HHHHHHHHH----H----H-HHHH-----------HHHHH-HHHHHHHHHHHHHHHHHH--HHH--HhcCCHHHHhhHHH
Confidence            000000000    0    0 0000           00000 00000 000000000000  000  00011367889889


Q ss_pred             hhhhhHHHHHHHHHHhhhhhHHHHHH-hhhccCCCCeeeCC-------------------------CCCCCCCChhHHHH
Q 007405          378 LVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPV-------------------------TCHPRGASQLQRVG  431 (605)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ip~-------------------------~~~~~~~~~~~~i~  431 (605)
                      .+++++..++||..|.|.++.+...+ .+.|+++.++.+|+                         .++++.++...|++
T Consensus       270 ~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa  349 (493)
T PRK15462        270 IVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFA  349 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence            99999999999999999999665555 56788888898887                         22344678889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHH
Q 007405          432 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS  511 (605)
Q Consensus       432 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~  511 (605)
                      +|+++.+++++++.+.....    ..++         . .+.+|++..|++.++||.+.+|..++++.+.+|++.+|+.|
T Consensus       350 ~g~~~~g~~f~~l~~~~~~~----~~~~---------~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~m  415 (493)
T PRK15462        350 LGLGLMSAGFCILTLSARWS----AMYG---------H-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLT  415 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhc----CCCC---------C-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHH
Confidence            99999999998887653211    1111         2 68899999999999999999999999999999999999999


Q ss_pred             HHHHHH-hhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHH--HHHHHHHHhhceeccc
Q 007405          512 AYAALA-GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN--FCAFLYSAYRYKYRSE  586 (605)
Q Consensus       512 g~~~~~-~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~--~~~~~~~~~~~~~~~~  586 (605)
                      |++.+. ..+|+.++..+.........   +.... ..+  +..++..+|..++...++.  ++.+.+.++..|.|++
T Consensus       416 g~w~l~~~~~~~~~~g~~~~~~~~~~~---~~~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
T PRK15462        416 GIYMLLSGAIANYLAGVIADQTSQASF---DASGA-INY--SINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR  487 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccC---Ccccc-ccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999885 47899888888775532110   00000 000  1123556677766655444  5555555665665544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=8e-33  Score=302.88  Aligned_cols=438  Identities=15%  Similarity=0.204  Sum_probs=308.9

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~  143 (605)
                      ..++++.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+....+..++++|+++||++|||++++++.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~   95 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA   95 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34667789999999999999999999999999999999999999999888888888888899999999449999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      +++.++..+++++.                           .+...++++++++|+|.|...++..++++|++|+++.+ 
T Consensus        96 ~~~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~-  147 (500)
T PRK09584         96 IVLAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR-  147 (500)
T ss_pred             HHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh-
Confidence            99999988887651                           13456678889999999999999999999999876522 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhH------
Q 007405          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR------  295 (605)
Q Consensus       224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~------  295 (605)
                         |..+++++|++.++|+.+||.+++++.+++||++.|++.++..+++++.++..++..++.  ++++++...      
T Consensus       148 ---~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (500)
T PRK09584        148 ---LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLT  224 (500)
T ss_pred             ---hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHH
Confidence               567889999999999999999999999999999999998877666665554444333222  222222211      


Q ss_pred             HHHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhh
Q 007405          296 VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTL  375 (605)
Q Consensus       296 ~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  375 (605)
                      ...+........         + ...+.  +        ... ....+...........       ..+..++ .++++.
T Consensus       225 ~~~~~~~~~~~~---------~-~~~~~--~--------~~~-~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~  275 (500)
T PRK09584        225 IVGVVALIAIAT---------W-LLHNQ--E--------IAR-MALGVVALGIVVIFGK-------EAFAMKG-AARRKM  275 (500)
T ss_pred             HHHHHHHHHHHH---------H-HHhcc--h--------HHH-HHHHHHHHHHHHHHHH-------HHhhcCH-HHHHHH
Confidence            111111111100         0 00000  0        000 0000000000000000       0011122 345666


Q ss_pred             hhhhhhhHHHHHHHHHHhhhhhHHHHHHh-hhccCCCCeeeCC----------------------CCCCCCCChhHHHHH
Q 007405          376 VRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPV----------------------TCHPRGASQLQRVGI  432 (605)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ip~----------------------~~~~~~~~~~~~i~~  432 (605)
                      +..+.+++..++||..+.|+++.+..+.. ..+....++.+|+                      ++..++.+..+++.+
T Consensus       276 ~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~  355 (500)
T PRK09584        276 IVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAI  355 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHH
Confidence            66677788889999999999998777664 3555666777763                      455666778899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHH
Q 007405          433 GLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSA  512 (605)
Q Consensus       433 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g  512 (605)
                      |+++++++++.+......    ...+         .. .+.+|+++++++.++||++..|..++++.+.+|+++||+++|
T Consensus       356 G~~l~~l~f~~l~~~~~~----~~~~---------~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g  421 (500)
T PRK09584        356 GMVLCSGAFLVLPLGAKF----ANDA---------GI-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMG  421 (500)
T ss_pred             HHHHHHHHHHHHHHHHHh----cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHH
Confidence            999999999887765321    1111         13 678899999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC-CcCcchhHHHHHHHHHHHHHHHHHHHHHhhceec
Q 007405          513 YAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN-INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  584 (605)
Q Consensus       513 ~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~-~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  584 (605)
                      ++.+...+|+.++..+...... .   .     -..+. ...+.+..+|..+++++++..++++...++.++.
T Consensus       422 ~~~l~~a~g~~~~g~~~~~~~~-~---~-----~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        422 SWFLTTAGAALIAGYVANLMAV-P---D-----NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-c---c-----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888764321 0   0     00000 0112356778888877777666666666655544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.98  E-value=8.1e-29  Score=275.06  Aligned_cols=310  Identities=24%  Similarity=0.421  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007405           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (605)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (605)
                      ++|||+.+.+..|+++.+|++.+.+..+.+.|....++.+++||+++|+++||+++++++.+++.+|.+++++++..+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999988875432111


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHH
Q 007405          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (605)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~  242 (605)
                      .+                    ......++++.+.++|.|+++|+..++++|++++++.   +.|.++++++|++.|+|+
T Consensus        81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS  137 (654)
T TIGR00926        81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS  137 (654)
T ss_pred             cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence            11                    2344567888999999999999999999999986432   238999999999999999


Q ss_pred             HHHHHHHHHHHhhh-------chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccc
Q 007405          243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (605)
Q Consensus       243 ~i~p~i~~~l~~~~-------gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~  315 (605)
                      .+++++.+++.+..       +|.++|.+++++++++++++...++.+++.++.++++....++++.+.+++....++  
T Consensus       138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~--  215 (654)
T TIGR00926       138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE--  215 (654)
T ss_pred             HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc--
Confidence            99999999998543       699999999999999999998888888888888888888888887777654321100  


Q ss_pred             cccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh
Q 007405          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF  395 (605)
Q Consensus       316 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  395 (605)
                                            ....+++|.+...             ...++++++|++++++++++...+||..+.|+
T Consensus       216 ----------------------~~~~~~ld~a~~~-------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~  260 (654)
T TIGR00926       216 ----------------------HWPLHWLDYAKDK-------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ  260 (654)
T ss_pred             ----------------------ccchhHHHHhccc-------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                  0002333333221             12345688999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCeeeCC--------------------------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007405          396 LTLSVQQAYTMNTHMGKLKLPV--------------------------TCHPRGASQLQRVGIGLAVSILSVIWAGIFER  449 (605)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~ip~--------------------------~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~  449 (605)
                      .+.+..|+..++.+++++.+|+                          ++++..+++.+|+++|+++++++++++++.+.
T Consensus       261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~  340 (654)
T TIGR00926       261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQL  340 (654)
T ss_pred             hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888777777666                          33334578899999999999999999998887


Q ss_pred             HHH
Q 007405          450 YRR  452 (605)
Q Consensus       450 ~~~  452 (605)
                      .+.
T Consensus       341 ~~~  343 (654)
T TIGR00926       341 KVN  343 (654)
T ss_pred             HHh
Confidence            755

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=3e-25  Score=249.60  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007405           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (605)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (605)
                      +...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++++           
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa-----------  252 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV-----------  252 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            345566778889999999999999999999999999999999997 99999999999999888888775           


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007405          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (605)
Q Consensus       168 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~  247 (605)
                                       .+.+.++++|++.|++.|+..++..++++|.+|++.      |++.+++......+|.++++.
T Consensus       253 -----------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       253 -----------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             467889999999999999999999999999999998      999999999999999999998


Q ss_pred             HHHHHHhh-------------hchHHHHHHHHHHHHHHHHH
Q 007405          248 LVVYIQME-------------HGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       248 i~~~l~~~-------------~gw~~~f~~~~~~~~i~~~~  275 (605)
                      ++.++...             .+||+.+++.++..++.+++
T Consensus       310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA  350 (742)
T ss_pred             HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence            87666543             35888888777665555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=1e-23  Score=224.46  Aligned_cols=363  Identities=13%  Similarity=0.091  Sum_probs=240.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      .+|..++.+.+..++.....+...+ +.+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   83 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVG-LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL   83 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHc-chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            3455556555555554444443323 34567889999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      +.++.+.+.++                            .+.+.++++|+++|++.+...+...+++.|++|+++     
T Consensus        84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~-----  130 (390)
T PRK03545         84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK-----  130 (390)
T ss_pred             HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence            99998888876                            578889999999999999888999999999999988     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  305 (605)
                       |++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..+...++.+++  ++++..+..    .   
T Consensus       131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~----~---  200 (390)
T PRK03545        131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKSLP----L---  200 (390)
T ss_pred             -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHHHH----H---
Confidence             999999999999999999999999999989999999998876655544433322221110  000000000    0   


Q ss_pred             hhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhh-hhhhhHH
Q 007405          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR-LVPIPAC  384 (605)
Q Consensus       306 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~  384 (605)
                                   +                                                 ..+ +.+.. ....++.
T Consensus       201 -------------~-------------------------------------------------~~~-~~~~~~~~~~~~~  217 (390)
T PRK03545        201 -------------L-------------------------------------------------FRR-PALVSLYLLTVVV  217 (390)
T ss_pred             -------------H-------------------------------------------------HhC-cHHHHHHHHHHHH
Confidence                         0                                                 000 11111 1111111


Q ss_pred             HHHHHHHHhhhhhHHHHHHhhhccCCCCee------------eCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          385 TIMLNVILTEFLTLSVQQAYTMNTHMGKLK------------LPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR  452 (605)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~  452 (605)
                      ...++..+..... +.....+++....+..            +..++..+|.+.+ ++..+..+..+++..+....    
T Consensus       218 ~~~~~~~~~~~~~-~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~l~~~~----  291 (390)
T PRK03545        218 VTAHFTAYSYIEP-FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG-FLLIAIALLLVCLLLLLPAA----  291 (390)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHh----
Confidence            1112222111111 2222122222211110            0003333444332 34455554444443332221    


Q ss_pred             HHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 007405          453 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  532 (605)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  532 (605)
                                        .+.+.++...++.|++.+...+.....+.+..| +.|+.++|+++....+|..+|+.+.+.+
T Consensus       292 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~  352 (390)
T PRK03545        292 ------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQV  352 (390)
T ss_pred             ------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              244555666777888888777888888888877 5789999999999999999999999988


Q ss_pred             hcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007405          533 KSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  579 (605)
Q Consensus       533 ~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  579 (605)
                      .+..+                  +...|++.+++.++++++++...+
T Consensus       353 ~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        353 SLHLG------------------LSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HhccC------------------hhHHHHHHHHHHHHHHHHHHHHcc
Confidence            77443                  456788888888888888766653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=2.6e-23  Score=221.88  Aligned_cols=366  Identities=12%  Similarity=0.015  Sum_probs=242.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      .++.+..+.+..++..++.....+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            334577777888888888777788899999999999999999999999999999999999999997 9999999999988


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .++.+.+.++...... +                   ..+...+++.|+++|++.+...+...+++.|.+|+++      
T Consensus        92 ~~~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------  145 (399)
T PRK05122         92 ALSGLLYLLAGLLAAW-P-------------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------  145 (399)
T ss_pred             HHHHHHHHHhhhhhcc-c-------------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence            8877666554211000 0                   0246678999999999999999999999999999988      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHh
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  306 (605)
                      |++.++++..+.++|..+||.+++++.+..||++.+++..+..++..+.   ..+ .+..++.+++..+..         
T Consensus       146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~---------  212 (399)
T PRK05122        146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARP-RPAVPPVKGERLPFR---------  212 (399)
T ss_pred             hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---Hhc-CCCCCCCCccchhHH---------
Confidence            9999999888999999999999999999999999887765544332221   111 111000000000000         


Q ss_pred             hccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhh-hhhHHH
Q 007405          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV-PIPACT  385 (605)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~  385 (605)
                                                                                     +..|...... ...+..
T Consensus       213 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~  229 (399)
T PRK05122        213 ---------------------------------------------------------------RVLGRVWPYGMGLALAS  229 (399)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence                                                                           0000000000 000111


Q ss_pred             HHHHHHHhhhhhHHHHHHhhhccCCCCe----------eeCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          386 IMLNVILTEFLTLSVQQAYTMNTHMGKL----------KLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA  455 (605)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~  455 (605)
                      ..+........ .+.. ..+.+......          .+..++..+|.+.++.+..+.++.+++++.+...        
T Consensus       230 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------  299 (399)
T PRK05122        230 IGFGTIATFIT-LYYA-ARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--------  299 (399)
T ss_pred             HHHHHHHHHHH-HHHH-HcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--------
Confidence            11111111111 1111 11111000000          0000223334444455556666666665554433        


Q ss_pred             hhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Q 007405          456 ISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV  535 (605)
Q Consensus       456 ~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~  535 (605)
                                     .+.+++++..++.|++.+...+.......+..|++.||+++|+++....+|..+++.+.+.+.+.
T Consensus       300 ---------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  364 (399)
T PRK05122        300 ---------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW  364 (399)
T ss_pred             ---------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           23445566678889998888888888888999999999999999999999999999998887663


Q ss_pred             cCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007405          536 TGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  578 (605)
Q Consensus       536 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  578 (605)
                      .+                  ++..|++.+++.++++++.+++.
T Consensus       365 ~g------------------~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        365 FG------------------YPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             cC------------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            32                  46678887777777766655543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=3.8e-23  Score=220.82  Aligned_cols=333  Identities=15%  Similarity=0.168  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~  151 (605)
                      +.++...++...+.+.+.+.++.|+++++|+|..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5666888888999999999999999999999999999999999999999999999999997 999999999999999888


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (605)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~  231 (605)
                      .+.+.                            .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++++
T Consensus        92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~  137 (400)
T PRK11646         92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF  137 (400)
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence            88765                            467788899999999999888999999999999888      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcccc
Q 007405          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAF  311 (605)
Q Consensus       232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  311 (605)
                      ++.+...++|..+||.+++++. .+||++.|++.++..++..++..+..++.+.. +..++...   -+..         
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~---~~~~---------  203 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPVRE---GMTR---------  203 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhhHH---HHHH---------
Confidence            9999999999999999999998 67999999988776655544433333321110 00000000   0000         


Q ss_pred             CccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHH
Q 007405          312 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI  391 (605)
Q Consensus       312 p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  391 (605)
                             +                                                 ..+++ ++....   ....++..
T Consensus       204 -------~-------------------------------------------------~~~~~-~~~~~~---~~~~~~~~  223 (400)
T PRK11646        204 -------V-------------------------------------------------LRDKR-FVTYVL---TLTGYYML  223 (400)
T ss_pred             -------H-------------------------------------------------HcCch-HHHHHH---HHHHHHHH
Confidence                   0                                                 00011 111100   00111111


Q ss_pred             Hhhh---hhHHHHHHhhhccCCCC-----------eeeCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          392 LTEF---LTLSVQQAYTMNTHMGK-----------LKLPVTCH-PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI  456 (605)
Q Consensus       392 ~~~~---~~~~~~~~~~~~~~~~~-----------~~ip~~~~-~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~  456 (605)
                      +.+.   ...+.....+.+...+.           ...+..+. .++.+..+++..++++.+++++.++..         
T Consensus       224 ~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------  294 (400)
T PRK11646        224 AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------  294 (400)
T ss_pred             HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---------
Confidence            1111   11111111110100000           01111221 223334445566666666666555433         


Q ss_pred             hcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 007405          457 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  536 (605)
Q Consensus       457 ~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~  536 (605)
                                    .+.++++...++.+++.+...|...+.+.+.+|++.||+++|+.++...+|..+|+.+.+.+.+.+
T Consensus       295 --------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        295 --------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence                          233444445566788888899999999999999999999999999999999999999999987743

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=9.2e-23  Score=217.23  Aligned_cols=363  Identities=12%  Similarity=0.026  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++.+.+..++..++.+...+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||+++++.++..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence            456666667777777767778888899999999999999999999999999999999999997 9999999998877766


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+...++...+.. ..                   .+...++++|+++|++.+...+...+++.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~~~-~~-------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (392)
T PRK12382         95 GLAYLLAAILPVS-AP-------------------FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK  148 (392)
T ss_pred             HHHHHhhhccccc-hh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence            5544332111100 00                   367889999999999999888888899999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  309 (605)
                      +++++..+.++|..++|.+++++.+..||++.+.+..+..++...   ...+ .++.+++++...+..+           
T Consensus       149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~-----------  213 (392)
T PRK12382        149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNGT-VRKVPAHAGERPSLWS-----------  213 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHHh-ccCCCCCcccCchHHH-----------
Confidence            999999999999999999999999989999877655443322221   1111 1110000000000000           


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhh-hhhhhHHHHHH
Q 007405          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR-LVPIPACTIML  388 (605)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~  388 (605)
                                                                                   ..|.+.. .....+....+
T Consensus       214 -------------------------------------------------------------~~~~~~~~~~~~~l~~~~~  232 (392)
T PRK12382        214 -------------------------------------------------------------VVGLIWKPGLGLALQGVGF  232 (392)
T ss_pred             -------------------------------------------------------------HHHHHHHhHHHHHHHHHHH
Confidence                                                                         0000000 00000000111


Q ss_pred             HHHHhhhhhHHHHHHhhhccCC-----CCe-----eeCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405          389 NVILTEFLTLSVQQAYTMNTHM-----GKL-----KLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISH  458 (605)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~  458 (605)
                      ........ .+..+ .+.+...     .+.     ....++..++.+.++.+..+..+.+++++.....           
T Consensus       233 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------  299 (392)
T PRK12382        233 AVIGTFVS-LYFAS-KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----------  299 (392)
T ss_pred             hHHHHHHH-HHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----------
Confidence            11100000 11110 0000000     000     0000222333333344555666666665544432           


Q ss_pred             CccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCC
Q 007405          459 GYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGN  538 (605)
Q Consensus       459 ~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~  538 (605)
                                  .+.++..+..++.+++.+...+.......+..|++.||++.|+++....+|..+++.+.+.+.+..| 
T Consensus       300 ------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-  366 (392)
T PRK12382        300 ------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-  366 (392)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence                        2344555667778888888888888888999999999999999999999999999999998876333 


Q ss_pred             CCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007405          539 PKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  578 (605)
Q Consensus       539 ~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  578 (605)
                                       +...|++.+++.++++++.+...
T Consensus       367 -----------------~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        367 -----------------YPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             -----------------chHHHHHHHHHHHHHHHHHHhhc
Confidence                             35678888877777777665443

>PRK10504 putative transporter; Provisional

Probab=99.92  E-value=1.4e-22  Score=221.13  Aligned_cols=389  Identities=12%  Similarity=0.036  Sum_probs=239.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      .+.++.+.+..++..+..+.+.+.++.|. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            44577788888888888888888777776 56999999999999999999999999999999997 99999999998888


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.+.+.++                            .+...++++|+++|++.++..+...+++.|.+|+++      |
T Consensus        87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~  132 (471)
T PRK10504         87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y  132 (471)
T ss_pred             HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence            888777664                            467788899999999999999999999999999888      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhh
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  307 (605)
                      ++.+++.+...++|..++|.+++++.+..||++.|++..+...+..+......++.+..+.+.+    ..+.........
T Consensus       133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~----~~~~~~~~~~~~  208 (471)
T PRK10504        133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFD----LSGFLLLAVGMA  208 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCC----hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877666555554444443222111111    111110000000


Q ss_pred             ccccCccccccccccCCCcccccCCcccccCCCcchhhHh-----hhhhccccCCCCCCccccchhhhhhhhhhhhhhhh
Q 007405          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKA-----ALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP  382 (605)
Q Consensus       308 ~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  382 (605)
                      ..         .+...+.+.  ..  . ............     .....+.. ...+.  .. .+....|.+...+   
T Consensus       209 ~~---------~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~l~~~~~~~~~l---  267 (471)
T PRK10504        209 TL---------TLALDGSKG--LG--L-SPLAIAGLVAVGVVALLLYLLHARN-NNRAL--FS-LKLFRTRTFSLGL---  267 (471)
T ss_pred             HH---------HHHHhcCCc--CC--c-chHHHHHHHHHHHHHHHHHHHHHhc-CCCCc--cC-HHHhcccchHHHH---
Confidence            00         000000000  00  0 000000000000     00000000 00000  00 0000111111111   


Q ss_pred             HHHHHHHHHH---hhhhhHHHHHHhhhccCCCCee--------e---C-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007405          383 ACTIMLNVIL---TEFLTLSVQQAYTMNTHMGKLK--------L---P-VTCHPRGASQLQRVGIGLAVSILSVIWAGIF  447 (605)
Q Consensus       383 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------i---p-~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~  447 (605)
                      ....+.+..+   ......+.++..+.+....++.        +   + ..+..+|.+.++.+.+|..+.+++...+...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        268 AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV  347 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence            1111111111   1122223222222221111110        0   1 1334455555565666666666555444432


Q ss_pred             HHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHH
Q 007405          448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI  527 (605)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~  527 (605)
                      .                   .. .+.+++...+++.|++.++..+..+....+.+|++.+|.++|+.++.+.+|..+|+.
T Consensus       348 ~-------------------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  407 (471)
T PRK10504        348 A-------------------LL-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVT  407 (471)
T ss_pred             c-------------------cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHH
Confidence            1                   01 223333445667788888999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccC
Q 007405          528 LNSIIKSVTG  537 (605)
Q Consensus       528 l~~~i~~~~~  537 (605)
                      +.+.+.+..+
T Consensus       408 i~g~ll~~~g  417 (471)
T PRK10504        408 IAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHhh
Confidence            9998876544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=6.6e-23  Score=225.09  Aligned_cols=392  Identities=14%  Similarity=0.066  Sum_probs=239.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +|..+..+.+..++..+....+.+.+| .+.+++|.+..+.+|+.+.|.++..++.+++|+++||+ |||++++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            456677777777777777665655555 55688999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccC-CCCCchhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT  225 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~-~~~~~~~~~  225 (605)
                      .++.+.++++                            .+.+.++++|+++|+|.++..+.....+.+.+ |+++     
T Consensus        82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~-----  128 (495)
T PRK14995         82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ-----  128 (495)
T ss_pred             HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence            9999999886                            57889999999999999998888888887776 5566     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  305 (605)
                       |+++++++....++|..+||.+++++.++.||||.|++...+.++.+++.....++.+.++.  ++ .|..+.+.....
T Consensus       129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~-~d~~g~~~~~~~  204 (495)
T PRK14995        129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD--QP-LNLGHALMLIVA  204 (495)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC-CChHhHHHHHHH
Confidence             99999999999999999999999999999999999999887766665555554444322111  11 121111111000


Q ss_pred             hhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCC---Cccccchhhhhhhhhhhhhhh-
Q 007405          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP---WKLCTVTQVEEVKTLVRLVPI-  381 (605)
Q Consensus       306 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~~~~~~-  381 (605)
                      .......      + ....+.  ......+...-.............+.. ...|   +++++     + +.+...... 
T Consensus       205 ~~~l~~~------~-~~~~~~--~~~~~~~~~~~~~~~~~l~~f~~~e~~-~~~p~~~~~lf~-----~-~~~~~~~~~~  268 (495)
T PRK14995        205 ILLLVYS------A-KTALKG--FLSLWVTSLTLLTGALLLGLFIRTQLA-ASRPMIDMRLFT-----H-RIILSGVVMA  268 (495)
T ss_pred             HHHHHHH------H-Hhcccc--CCchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcCHHHhC-----C-cccHHHHHHH
Confidence            0000000      0 000000  000000000000000000000000000 0111   11111     1 111111111 


Q ss_pred             hHHHHHHHHHHhhhhhHHHHHHhhhccCCCCe-ee----------CC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007405          382 PACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KL----------PV-TCHPRGASQLQRVGIGLAVSILSVIWAGIFER  449 (605)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i----------p~-~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~  449 (605)
                      ++....++. +......+.+...+.+....+. ..          +. ++..+|.+.+..+..|+++.+++++.+.....
T Consensus       269 ~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~  347 (495)
T PRK14995        269 MTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF  347 (495)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            111111111 1111112222222222211111 11          11 22333444445566777777777665544310


Q ss_pred             HHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHH
Q 007405          450 YRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN  529 (605)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~  529 (605)
                                         . .+.+......++.|+|.++..++....+.+.+|++.++.+++++++.+.+|..+|+.+.
T Consensus       348 -------------------~-~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        348 -------------------S-TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF  407 (495)
T ss_pred             -------------------C-CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence                               1 23444556778889999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 007405          530 SIIKS  534 (605)
Q Consensus       530 ~~i~~  534 (605)
                      +.+.+
T Consensus       408 g~i~~  412 (495)
T PRK14995        408 GLLLS  412 (495)
T ss_pred             HHHHH
Confidence            98754

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.92  E-value=1.6e-22  Score=216.33  Aligned_cols=178  Identities=17%  Similarity=0.165  Sum_probs=151.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      +.+|..+...+...+++.+..+...... +.+.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            4667677777777888777776655544 456678999999999999999999999999999999997 99999999998


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      +..++.+.+.++                            .+.+.+++.|++.|++.+...+...+++.|.+|+++    
T Consensus        89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  136 (406)
T PRK11551         89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL----  136 (406)
T ss_pred             HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence            888887777665                            467888899999999999999999999999999988    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                        |++.+++++...++|..++|.+++.+.+..+|++.|++.+++.++..++...
T Consensus       137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK11551        137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMR  188 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999999988888889999999877655544444333

>PRK10054 putative transporter; Provisional

Probab=99.92  E-value=8e-23  Score=217.93  Aligned_cols=343  Identities=13%  Similarity=0.096  Sum_probs=231.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      .+|.++.+.+..++...+.+.+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            445677888888999999888999999999999999999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .++.+.+.++                            .+.+.+++++.+.|.+.+...++..++.+|.+|+++      
T Consensus        84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  129 (395)
T PRK10054         84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------  129 (395)
T ss_pred             HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence            8888777765                            456667777888888878778889999999999888      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHh
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  306 (605)
                      |++.+++.+...++|..++|.+++++.+ .+|+.+|++.+++.++.++...+..++.++.+++.+  ..           
T Consensus       130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~--~~-----------  195 (395)
T PRK10054        130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATET--GS-----------  195 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccch--hh-----------
Confidence            9999999999999999999999999875 689999998877766665444333322111100000  00           


Q ss_pred             hccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhh-hhhhHHH
Q 007405          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL-VPIPACT  385 (605)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~  385 (605)
                               .+                           +.              .     +-.++ |.++.. +..++..
T Consensus       196 ---------~~---------------------------~~--------------~-----~~~~~-~~~~~~~~~~~l~~  219 (395)
T PRK10054        196 ---------VW---------------------------SP--------------S-----VLLQD-KALLWFTCSGFLAS  219 (395)
T ss_pred             ---------hh---------------------------hh--------------h-----hhccC-ceehHHHHHHHHHH
Confidence                     00                           00              0     00000 111111 1111111


Q ss_pred             HHHHHHHhhhhhHHHH-HHhhhccCC-------C-CeeeC----CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          386 IMLNVILTEFLTLSVQ-QAYTMNTHM-------G-KLKLP----VTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR  452 (605)
Q Consensus       386 ~~~~~~~~~~~~~~~~-~~~~~~~~~-------~-~~~ip----~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~  452 (605)
                      ..+............. +....+...       . ...++    .++..++.+.+..+.+|+++.++++..+....    
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----  295 (395)
T PRK10054        220 FVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----  295 (395)
T ss_pred             HHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----
Confidence            1111111111111100 000000000       0 01111    13444455555666677766666665544321    


Q ss_pred             HHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 007405          453 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  532 (605)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  532 (605)
                                        .+.+.+.+..++.++|++...|..++.+.+.+|++.||.+.+..+ ...+|..+|+.+.+.+
T Consensus       296 ------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l  356 (395)
T PRK10054        296 ------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVI  356 (395)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHH
Confidence                              234444556778899999999999999999999999999988765 5668999999999998


Q ss_pred             hcccC
Q 007405          533 KSVTG  537 (605)
Q Consensus       533 ~~~~~  537 (605)
                      .+..|
T Consensus       357 ~~~~g  361 (395)
T PRK10054        357 LTTLP  361 (395)
T ss_pred             HHHcC
Confidence            87554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=7.1e-22  Score=203.68  Aligned_cols=368  Identities=14%  Similarity=0.110  Sum_probs=256.4

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~  143 (605)
                      .+..|..++.+.+..|+....-+.... +.+-+.+++|.|..++++.++.|..+..++.|+...+.||+ .||++++..+
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence            344566677777777776666554444 55677899999999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      .+++++.++++++                            .|+..++++|++.|+..|.+++...++.++..|+++   
T Consensus        86 ~lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---  134 (394)
T COG2814          86 ALFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---  134 (394)
T ss_pred             HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---
Confidence            9999999999998                            689999999999999999999999999999999999   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc-cccccCCCCCchhHHHHHHHH
Q 007405          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP-LYRHRLPGGSPLTRVAQVLVA  302 (605)
Q Consensus       224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~  302 (605)
                         |++++++.+.+..++..+|..++.++.+.+|||+.|++.+++.++.++..+...| ..... +...++.+..++   
T Consensus       135 ---~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~-~~~~~~~~~~~~---  207 (394)
T COG2814         135 ---RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISG-SLPGPLRTLLRL---  207 (394)
T ss_pred             ---hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-CCCcchhHHHHH---
Confidence               9999999999999999999999999999999999999999888888777766665 11100 000110000000   


Q ss_pred             HHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhh
Q 007405          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP  382 (605)
Q Consensus       303 ~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  382 (605)
                                       .                                                 .+.+....+....
T Consensus       208 -----------------l-------------------------------------------------~~p~v~~~l~~t~  221 (394)
T COG2814         208 -----------------L-------------------------------------------------RRPGVLLGLLATF  221 (394)
T ss_pred             -----------------h-------------------------------------------------cCchHHHHHHHHH
Confidence                             0                                                 0000111111122


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHhhhccCCCCee---------e---CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          383 ACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK---------L---PVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERY  450 (605)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i---p~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~  450 (605)
                      +.....|..|..... +.++..+++....++.         +   -.+|..++ +..+.+...+.+.++.++.+.+..  
T Consensus       222 l~~~g~F~~ftYi~P-~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--  297 (394)
T COG2814         222 LFMTGHFALYTYIRP-FLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG--  297 (394)
T ss_pred             HHHcchhhhHHhHHH-HHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--
Confidence            222223333322222 2222222222110000         0   00555566 666656666677777777766552  


Q ss_pred             HHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007405          451 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  530 (605)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~  530 (605)
                                          .+.+..+...++.+++........+....+.+ ++.++.+++++....++|..+|..+++
T Consensus       298 --------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG  356 (394)
T COG2814         298 --------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGG  356 (394)
T ss_pred             --------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                34444555555566655444444444444433 356899999999999999999999999


Q ss_pred             HhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          531 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  580 (605)
Q Consensus       531 ~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  580 (605)
                      .+.+..|                  +....++.+++.++++++.+...+.
T Consensus       357 ~v~~~~g------------------~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         357 LVLDALG------------------YAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHhhc------------------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9887433                  4567788888888887776665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=1.5e-22  Score=217.46  Aligned_cols=379  Identities=15%  Similarity=0.075  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~  153 (605)
                      ++...++..++.......++.++ ++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence            34445555555544445555554 56778999999999999999999999999999997 99999999888777776665


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      ......    ..                   .+.+.+++.|++.|++.+...++..+++.|.+|+++      |+++.++
T Consensus       100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489        100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            432110    00                   356778889999999988888888999999999888      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccC-CCCCchhHHHHHHHHHHHhhccccC
Q 007405          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFS  312 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~p  312 (605)
                      .+...++|..+||.+++++.+..+|++.|++.++..++..++.+. .++.+..+ +..++..+..               
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~---------------  214 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLRSLL---------------  214 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchHHHH---------------
Confidence            999999999999999999998889999998877666555444332 22111100 0000000000               


Q ss_pred             ccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHHH
Q 007405          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (605)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  392 (605)
                                                      +.              +     ......+.+.......+....... +
T Consensus       215 --------------------------------~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~-~  242 (417)
T PRK10489        215 --------------------------------AG--------------F-----RFLLASPVVGGIALLGGLLTMASA-V  242 (417)
T ss_pred             --------------------------------HH--------------H-----HHHHcChHHHHHHHHHHHHHHHHh-H
Confidence                                            00              0     000000111111111011111111 1


Q ss_pred             hhhhhHHHHHHhhhccCCCCee------------eCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 007405          393 TEFLTLSVQQAYTMNTHMGKLK------------LPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY  460 (605)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~------------ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (605)
                      ..+...+..+..+.+....++.            +...+..++.+..+.+..+.++.+++++.+...             
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  309 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------  309 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------
Confidence            1111122222122222111110            000222233333333555655555555544322             


Q ss_pred             cccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCC
Q 007405          461 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK  540 (605)
Q Consensus       461 ~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~  540 (605)
                                .+.+.+....++.|++.+...+...++..+.+|++.||+++|+++....+|..+|+.+.+.+.+..+   
T Consensus       310 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g---  376 (417)
T PRK10489        310 ----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT---  376 (417)
T ss_pred             ----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc---
Confidence                      2344455566777888888778888899999999999999999999999999999999998877433   


Q ss_pred             CCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceecccCCCCCc
Q 007405          541 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND  592 (605)
Q Consensus       541 ~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~~~~~~~~  592 (605)
                                     ....++..+++.++..++.+...+++|+++.||.+.+
T Consensus       377 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        377 ---------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             ---------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence                           2345665666666655666666677777666654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1e-22  Score=224.10  Aligned_cols=178  Identities=15%  Similarity=0.110  Sum_probs=133.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~  141 (605)
                      +++.+....+..+........+....+ .+..+     .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            444444455555555554433333233 33332     234556778899999999999999999999997 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 007405          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~  221 (605)
                      +.+++.++.++++++..   ..+                   ..+...++++|+++|++.|+..+..+.+++|.+|+++ 
T Consensus        92 ~~~~~~v~~~~~~~~~~---~~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~-  148 (502)
T TIGR00887        92 ELIIMIIATVASGLSPG---SSP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW-  148 (502)
T ss_pred             HHHHHHHHHHHHHHccC---ccc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-
Confidence            99999999888776521   000                   0236789999999999999999999999999999999 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhchHHHHHHHHHHHHHHHH
Q 007405          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-----------------------~~gw~~~f~~~~~~~~i~~~  274 (605)
                           |+++.++++....+|..+++.++.++..                       ..+||+.|.+.++..++.++
T Consensus       149 -----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       149 -----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                 9999999999999999999888765532                       23799999777665554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=6.1e-23  Score=224.45  Aligned_cols=152  Identities=16%  Similarity=0.175  Sum_probs=123.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCC
Q 007405          101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE  180 (605)
Q Consensus       101 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~  180 (605)
                      +.+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+.++++.........               
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~---------------  114 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGP---------------  114 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccc---------------
Confidence            88899999999999999999999999999997 99999999999998888777653210000000               


Q ss_pred             CccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 007405          181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------  253 (605)
Q Consensus       181 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-------  253 (605)
                       ++......++++|+++|++.|+..+...++++|++|+++      |++.+++...+..+|..+++.++..+.       
T Consensus       115 -~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  187 (479)
T PRK10077        115 -DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW  187 (479)
T ss_pred             -cchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence             000345678899999999999999999999999999999      999999999999999999987766543       


Q ss_pred             -hhhchHHHHHHHHHHHHHHHHH
Q 007405          254 -MEHGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       254 -~~~gw~~~f~~~~~~~~i~~~~  275 (605)
                       +..|||+.|++.++..++..+.
T Consensus       188 ~~~~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        188 LNTDGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             cccCChHHHHHHHHHHHHHHHHH
Confidence             3468999999887766655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.91  E-value=1.7e-21  Score=207.74  Aligned_cols=178  Identities=13%  Similarity=0.126  Sum_probs=151.6

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH
Q 007405           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (605)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~  140 (605)
                      +..+|..|+.+.......++.....|.....++. +.+++|+++++.++..+.+.++..++.++.|+++||+ |||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~   89 (394)
T PRK10213         12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVI   89 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHH
Confidence            3445667776666666655555565555555554 5678999999999999999999999999999999997 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 007405          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (605)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~  220 (605)
                      ++.++..++.+++.++                            .+.+.+++.|+++|++.+...+...+++.|++|+++
T Consensus        90 ~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~  141 (394)
T PRK10213         90 LFAVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT  141 (394)
T ss_pred             HHHHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH
Confidence            9999999988887775                            578899999999999999999999999999999988


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 007405          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~  274 (605)
                            |+++.++...+.++|..++|.+++++.+.+||++.|++.+++.++..+
T Consensus       142 ------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        142 ------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence                  999999999999999999999999999999999999987765554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.91  E-value=9.7e-22  Score=210.42  Aligned_cols=338  Identities=12%  Similarity=0.066  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (605)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~  154 (605)
                      .+.+++..++...+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.+.+.
T Consensus        19 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~   96 (406)
T PRK15402         19 VLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAIL   96 (406)
T ss_pred             HHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444 45688999999999999999999999999999999997 999999999998888888877


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHH
Q 007405          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (605)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~  234 (605)
                      .+                            .+.+.+++.|++.|++.+...+...+.+.|.+|+++      |.+..++.
T Consensus        97 ~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~  142 (406)
T PRK15402         97 LA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALM  142 (406)
T ss_pred             HH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHH
Confidence            65                            467788899999999999888888999999999988      88988988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCcc
Q 007405          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSS  314 (605)
Q Consensus       235 ~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~  314 (605)
                      +....++..++|.+++++.+..+|++.|++.+++.++..+..+...++.++.++++.+..+..+-.              
T Consensus       143 ~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  208 (406)
T PRK15402        143 ANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDY--------------  208 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHH--------------
Confidence            888888999999999999998899999998877766665544333332211110000000000000              


Q ss_pred             ccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhh-hHHHHHHHHHHh
Q 007405          315 ELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILT  393 (605)
Q Consensus       315 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~  393 (605)
                                                       .                  .-..+ +.+...... .+....+. .+.
T Consensus       209 ---------------------------------~------------------~~~~~-~~~~~~~~~~~~~~~~~~-~~~  235 (406)
T PRK15402        209 ---------------------------------K------------------LVLKN-RRFVAGALALGLVSLPLL-AWI  235 (406)
T ss_pred             ---------------------------------H------------------HHHcC-cHHHHHHHHHHHHHHHHH-HHH
Confidence                                             0                  00000 111111000 00000000 000


Q ss_pred             hhhhHHHHHHhhhccCCCCe-ee-----------CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 007405          394 EFLTLSVQQAYTMNTHMGKL-KL-----------PVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE  461 (605)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~-~i-----------p~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (605)
                      .....+..+..+.+....++ ..           ...+..++.+..+.+.+|.++.+++++.+......           
T Consensus       236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------  304 (406)
T PRK15402        236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI-----------  304 (406)
T ss_pred             HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence            01111111111111110000 00           00333445555555667777666666655543100           


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 007405          462 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  534 (605)
Q Consensus       462 ~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  534 (605)
                            .. .+.++++...++.++|.+...+..+...... +++.||.+.++.++.+.+|..+|+.+.+.+.+
T Consensus       305 ------~~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        305 ------SS-HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             ------cc-ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  01 3456677788889999988888777766544 45899999999999999999999999988765

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.91  E-value=5e-22  Score=208.19  Aligned_cols=345  Identities=14%  Similarity=0.032  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~  153 (605)
                      ++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445566666666555666676665 5899999999999999999999999999999997 99999999998888887777


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      .+....    +.                   .+.+.++++|++.|++.+...+...++++|.+|+++      |++.+++
T Consensus        82 ~~~~~~----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  132 (365)
T TIGR00900        82 PFVALL----GG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL  132 (365)
T ss_pred             HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence            665210    00                   267889999999999999999999999999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchh-HHHHHHHHHHHhhccccC
Q 007405          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT-RVAQVLVAAFRKRHAAFS  312 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~p  312 (605)
                      .+....+|..++|.+++++.+..||++.|++.++..++..+..+..+.+..++++ +++.. +..+              
T Consensus       133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------  197 (365)
T TIGR00900       133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALSNAVLR--------------  197 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccchhHHH--------------
Confidence            9999999999999999999999999999988777665554443332221111000 00000 0000              


Q ss_pred             ccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhh-hHHHHHHHHH
Q 007405          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVI  391 (605)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~  391 (605)
                                                   +..+.              +     +.....+.+...... ++....+...
T Consensus       198 -----------------------------~~~~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (365)
T TIGR00900       198 -----------------------------DTREG--------------I-----KFVLKNPLLRTLLLLALLFNLVFAPA  229 (365)
T ss_pred             -----------------------------HHHhH--------------H-----HHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence                                         00000              0     000000111111111 1111111111


Q ss_pred             HhhhhhHHHHHHhhhccCCCCe-----e-------eCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007405          392 LTEFLTLSVQQAYTMNTHMGKL-----K-------LPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG  459 (605)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~-----~-------ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (605)
                      .......+..+..+.+....+.     .       +...+..++.+....+..++++.+++++.....            
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  297 (365)
T TIGR00900       230 IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT------------  297 (365)
T ss_pred             HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh------------
Confidence            1111122222111211111010     0       000222233333444555555555555544432            


Q ss_pred             ccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 007405          460 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  534 (605)
Q Consensus       460 ~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  534 (605)
                               + .+.+.+....++.|++.+...+...++..+.+|++.||.++|+.+....+|..+++.+.+.+.+
T Consensus       298 ---------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       298 ---------P-PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             ---------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1 1245566677888999999999999999999999999999999999999999999999988765

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=1.9e-21  Score=209.99  Aligned_cols=168  Identities=10%  Similarity=0.047  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+..++..++..+..+.+...++.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence            3444444444444444555555544 567999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      ++++++                            .+.+.+++.|++.|++.|...+...+++.|++|+++      |++.
T Consensus       103 ~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~  148 (434)
T PRK11663        103 ILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGW  148 (434)
T ss_pred             HHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHH
Confidence            888775                            567888889999999999888999999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~  274 (605)
                      +++++.+.++|..++|.+++++.+.+||++.|++.++..++..+
T Consensus       149 ~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        149 WAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987766544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.91  E-value=2.8e-21  Score=206.55  Aligned_cols=361  Identities=13%  Similarity=0.057  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      ....+...++..++++...+.++.|++ ++|.+..+     .+++.+++.+...++.++.|+++||+ |||+++.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   93 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence            455566677777777777778888875 58888654     37788889999999999999999997 999999999988


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+++...                            .+.+.+++.|++.|++.+ ..+...+++.|.+|+++     
T Consensus        94 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-----  139 (408)
T PRK09874         94 MGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK-----  139 (408)
T ss_pred             HHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh-----
Confidence            88887777664                            467888899999999865 45777788899999888     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  305 (605)
                       |++..++.+...++|..++|.+++.+.+..+|++.|++.+++.++..+......++.....++++. .+.        +
T Consensus       140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~  209 (408)
T PRK09874        140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHM--------R  209 (408)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHH--------H
Confidence             999999999999999999999999999989999999988877665555444433321110000000 000        0


Q ss_pred             hhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHH
Q 007405          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACT  385 (605)
Q Consensus       306 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~  385 (605)
                                                             +.  ...                 .++.+.....+.   ..
T Consensus       210 ---------------------------------------~~--~~~-----------------~~~~~~~~~~~~---~~  228 (408)
T PRK09874        210 ---------------------------------------EV--VTS-----------------LKNPKLVLSLFV---TT  228 (408)
T ss_pred             ---------------------------------------HH--HHh-----------------CcCCchHHHHHH---HH
Confidence                                                   00  000                 000000000000   00


Q ss_pred             HHHHHHHhhhh---hHHHHHHhhhccCC---CCe-----------eeCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007405          386 IMLNVILTEFL---TLSVQQAYTMNTHM---GKL-----------KLPV-TCHPRGASQLQRVGIGLAVSILSVIWAGIF  447 (605)
Q Consensus       386 ~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~-----------~ip~-~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~  447 (605)
                      ..+........   ..+...........   .++           ..+. ++..+|.+.++.+..++.+.+++++.....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh
Confidence            00111110010   11111100000000   000           0011 233444444454555655555544443322


Q ss_pred             HHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHH
Q 007405          448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI  527 (605)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~  527 (605)
                                             .+.+.+....++.|++.+...|...+...+..|++.+|..+++++....+|..+|+.
T Consensus       309 -----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~  365 (408)
T PRK09874        309 -----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL  365 (408)
T ss_pred             -----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence                                   234445556677899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007405          528 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  579 (605)
Q Consensus       528 l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  579 (605)
                      +.+.+.+..+                  +...|++.+++.+++.+..+...+
T Consensus       366 ~~G~l~~~~g------------------~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        366 MGAAISANYG------------------FRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHHhhcc------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998766332                  356788888888887776655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=2.3e-21  Score=207.87  Aligned_cols=182  Identities=15%  Similarity=0.064  Sum_probs=153.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      |.+|+.++..++..+++.+....+.. ...++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence            34566666677766666666554444 45589999999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      ++.++.++++++                            .+...++++|++.|++.++..+....++.|++|+++    
T Consensus        82 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----  129 (412)
T TIGR02332        82 LWGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----  129 (412)
T ss_pred             HHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence            999999998876                            467889999999999999999999899999999988    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                        |++.+++++.+..+|..++|.+++++.+      ..|||+.|++.++..++..++..+..++
T Consensus       130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence              9999999999999999999999998874      3689999999877765554444444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.90  E-value=2e-21  Score=204.68  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      .......+.+.+++|++.++.+++.+.+.+++.++.++.|+++||+ |||+++..+.+....+.. +....         
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~---------   76 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP---------   76 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh---------
Confidence            4445566677889999999999999999999999999999999997 999987665555444432 22210         


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .++..++++|+++|+|.+.. .......+|.+|+++      |++.+++...+..+|..+++
T Consensus        77 ------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~  131 (368)
T TIGR00903        77 ------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFAL  131 (368)
T ss_pred             ------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              36788999999999999864 455566699999988      99999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       247 ~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      .+++++.+.+|||+.|++.+++.++..++.+...+
T Consensus       132 ~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       132 AAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999877776555554444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.90  E-value=3.9e-21  Score=210.88  Aligned_cols=176  Identities=18%  Similarity=0.140  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHH-----HHHHHHHHHHHhhhHHHHHhhhccchHHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~  141 (605)
                      ++.++...+..+++.+.+. +..+..+++.++++.+..+ ..+     +.++..++..++.++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4455666677777777654 4556677888888644322 111     23666788889999999999997 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 007405          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~  221 (605)
                      +++++.++.++++++.++..+..                    ..+..++++|+++|++.|+..+...++++|++|+++ 
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g~--------------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIGI--------------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHH--------------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence            99999999999988622100000                    011248899999999999999999999999999998 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchHHHHHHHHHHHHH
Q 007405          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI  271 (605)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~~~~~~~~i  271 (605)
                           |+...++...+..+|..+|+.+...+.        ..+|||+.|++.++..++
T Consensus       152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence                 999999888888888888876654442        257999999986654443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.90  E-value=4.7e-21  Score=204.25  Aligned_cols=357  Identities=11%  Similarity=0.041  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007405           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (605)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~  156 (605)
                      +.+..+..++.+.+. .+.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.+.++++
T Consensus        17 ~~~~~~~~~~~~~~~-lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a   94 (393)
T PRK09705         17 IGLNMRPLLTSVGPL-LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY   94 (393)
T ss_pred             HHHHcchhhhccchh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC
Confidence            333333333444444 4467789999999999999999999999999999999997 99999999999999999999987


Q ss_pred             hhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHH
Q 007405          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (605)
Q Consensus       157 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~  236 (605)
                                                  .++..++++|+++|++.+...+....++.|++| ++      |+..++++..
T Consensus        95 ----------------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~  139 (393)
T PRK09705         95 ----------------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSA  139 (393)
T ss_pred             ----------------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHH
Confidence                                        467788999999999999999999999999987 66      8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccc
Q 007405          237 SVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (605)
Q Consensus       237 ~~~ig~~i~p~i~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~  315 (605)
                      +.++|..+++.+++++.++. +||+.+.+.++..++.++.++...++   + ++.++                     ++
T Consensus       140 ~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~---------------------~~  194 (393)
T PRK09705        140 ALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR---E-VASSH---------------------KT  194 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC---C-Ccccc---------------------CC
Confidence            99999999999999988875 79988776555444333322221111   0 10000                     00


Q ss_pred             cccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh
Q 007405          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF  395 (605)
Q Consensus       316 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  395 (605)
                      ..                                         .+.+..     .+.+.....+...+....++......
T Consensus       195 ~~-----------------------------------------~~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~l  228 (393)
T PRK09705        195 TT-----------------------------------------TPVRVV-----FTPRAWTLGVYFGLINGGYASLIAWL  228 (393)
T ss_pred             Cc-----------------------------------------CCcccc-----cCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00                                         000000     01111111111111222222232323


Q ss_pred             hhHHHHHHhhhccCCCCeeeCC------------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc
Q 007405          396 LTLSVQQAYTMNTHMGKLKLPV------------TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS  463 (605)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~ip~------------~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (605)
                      +..+ .+ .+.+....+.....            ++..++.+.++.+.+++.+.++++..+....               
T Consensus       229 p~~l-~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~---------------  291 (393)
T PRK09705        229 PAFY-IE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP---------------  291 (393)
T ss_pred             HHHH-HH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc---------------
Confidence            3322 22 23232222211000            3333444444545666666555554433221               


Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhc-chhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCC
Q 007405          464 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG  542 (605)
Q Consensus       464 ~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~  542 (605)
                             .+...+  ..++.+++.+...|.......+.. |++.+|...|+.+....++..+++.+.+.+.+.+|     
T Consensus       292 -------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-----  357 (393)
T PRK09705        292 -------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-----  357 (393)
T ss_pred             -------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence                   111111  123456777777777777777776 46889999999999999999999999999887554     


Q ss_pred             CCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceec
Q 007405          543 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  584 (605)
Q Consensus       543 ~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  584 (605)
                        +          +...|.+.++++++..+..+.+.++++.+
T Consensus       358 --~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        358 --N----------YLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             --C----------chHHHHHHHHHHHHHHHHHHHhccccccc
Confidence              1          34556666666666666666665554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.90  E-value=2.3e-21  Score=212.17  Aligned_cols=388  Identities=15%  Similarity=0.118  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      +..+++..++..+....+. ...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            4445555555555544344 445567788999999999999999999999999999999997 99999999999999999


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      ++++.+                            .+...++++|+++|++.+...+...+++.|.+|+++      |+++
T Consensus        82 ~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  127 (485)
T TIGR00711        82 LLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRA  127 (485)
T ss_pred             HHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHH
Confidence            888765                            467889999999999999999999999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccc
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA  310 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  310 (605)
                      +++++....+|..++|.+++++.++.||++.|++.++..++..++.....++.++.+.  ++ .+..+....+.......
T Consensus       128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~d~~g~~l~~~~~~~~~  204 (485)
T TIGR00711       128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--EN-FDFLGLLLLSVGLGSLL  204 (485)
T ss_pred             HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CC-CcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877766665555444443222111  11 12111111111000000


Q ss_pred             cCccccccccccCCCcccccCCcccccCCCcchh--hH----hhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHH
Q 007405          311 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL--DK----AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC  384 (605)
Q Consensus       311 ~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  384 (605)
                      .       ....++++.      + ..+......  ..    ......+. ....|..  ..+-..+++.....+..++.
T Consensus       205 ~-------~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~  267 (485)
T TIGR00711       205 Y-------GLSEGPERG------W-FDSNEILILSITGLVAIIAFVVWEL-TDDNPLV--DLRLFKYRNFTIGCVYMSLL  267 (485)
T ss_pred             H-------HHhhCCCCC------C-CCchHHHHHHHHHHHHHHHHHHHHH-cCCCCcc--CHHHHcCCChHHHHHHHHHH
Confidence            0       000000000      0 000000000  00    00000000 0011110  00000111111111111111


Q ss_pred             HHHHHHHHhhhhhHHHHHHhhhccCCCCe-eeC----------C-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          385 TIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLP----------V-TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR  452 (605)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ip----------~-~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~  452 (605)
                      ...++.... ....+.+...+.+....++ ..+          . ++..++.+.++.+.+|..+.+++..++....    
T Consensus       268 ~~~~~~~~~-~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~----  342 (485)
T TIGR00711       268 GLGLYGSFY-LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF----  342 (485)
T ss_pred             HHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC----
Confidence            111111111 1112222222222111111 000          0 3334455555556677776666666554210    


Q ss_pred             HHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 007405          453 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  532 (605)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  532 (605)
                                    . ++.+.+.++...++.|+|.+...++......+..|++.+|.++|+.++.+.+|+.+|+.+.+.+
T Consensus       343 --------------~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       343 --------------T-PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             --------------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0 1134555666678889999999888888888999999999999999999999999999999877


Q ss_pred             hc
Q 007405          533 KS  534 (605)
Q Consensus       533 ~~  534 (605)
                      .+
T Consensus       408 ~~  409 (485)
T TIGR00711       408 LT  409 (485)
T ss_pred             HH
Confidence            54

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.90  E-value=3.2e-23  Score=219.21  Aligned_cols=340  Identities=32%  Similarity=0.444  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 007405          136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ  215 (605)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~  215 (605)
                      +|+++++.+++++|.+++.+++..+....                   +.+...++++++++++|.|+.+|++.++++||
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~-------------------~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq   61 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLPS-------------------GIQLGLFYIGLALIAVGTGGIKPNISPFGADQ   61 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhhh-------------------hHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            58999999999999999888765433211                   14567899999999999999999999999999


Q ss_pred             CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCchh
Q 007405          216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT  294 (605)
Q Consensus       216 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~  294 (605)
                      ++++++   ..|.++|+++|++.|+|+.+++.+.+++.+++||.+.|+++++.++++++.++..++.++.. ++.++++.
T Consensus        62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~  138 (372)
T PF00854_consen   62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT  138 (372)
T ss_dssp             SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred             hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence            998742   23999999999999999999999999999999999999999999999999999999988887 77777777


Q ss_pred             H-HHHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCC-ccccchhhhhh
Q 007405          295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW-KLCTVTQVEEV  372 (605)
Q Consensus       295 ~-~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  372 (605)
                      + ...+.....+++....|....+ +.......+      .....................    ..| ..++++++++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  207 (372)
T PF00854_consen  139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS------ERSIFGIIVFIRAAVIFFPEI----FFWALFCQVQRVEEL  207 (372)
T ss_dssp             --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC------CCCCCCCCCHHHHHHHHCCCH----HHHTTTSSTTTHHHC
T ss_pred             hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh------hhhhhhhhhhccchhhhhhhh----hhcccCCccceeeee
Confidence            7 4555555666655544432222 211100000      000000000111000100000    001 01445667778


Q ss_pred             hhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccCCCC-eeeCC-------------------------CCCCCCCCh
Q 007405          373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPV-------------------------TCHPRGASQ  426 (605)
Q Consensus       373 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~-------------------------~~~~~~~~~  426 (605)
                      |.+.+.++.+.+.+.++..+.+..+....+...+|....+ +.+|+                         .++++.++.
T Consensus       208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~  287 (372)
T PF00854_consen  208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP  287 (372)
T ss_dssp             CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred             eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence            8888888888888888888888888888888888777777 77777                         344567889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhH
Q 007405          427 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM  506 (605)
Q Consensus       427 ~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~  506 (605)
                      ..|+++|+++..+++++...++..|.......+.          .+.+|.++.+++.+++|.+..+...+..++.+|++.
T Consensus       288 ~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~  357 (372)
T PF00854_consen  288 PQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRA  357 (372)
T ss_dssp             HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhh
Confidence            9999999999999999999898877766555542          455788899999999999999999997777666666


Q ss_pred             HHHHHHHHHHHh
Q 007405          507 KSIGSAYAALAG  518 (605)
Q Consensus       507 rg~~~g~~~~~~  518 (605)
                      .+..+|++....
T Consensus       358 p~~m~~~~~~~~  369 (372)
T PF00854_consen  358 PSSMMGIWFALS  369 (372)
T ss_dssp             SSSSTHHHHHHH
T ss_pred             hHHHHHHHHHHh
Confidence            666666665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=1.8e-20  Score=199.00  Aligned_cols=173  Identities=13%  Similarity=0.113  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++.+....++.....+...+.++ .+.+++|.+.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            456666677777777666666554 56788999999999999999999999999999999997 9999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .++++++                            .+.+.+++.|++.|++.+...+....++.|.+|+++      |++
T Consensus        82 ~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~  127 (382)
T PRK10091         82 NAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTA  127 (382)
T ss_pred             HHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhH
Confidence            9888876                            578899999999999999888888889999999888      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .++++..+..+|..++|.+++++.+..+||+.|++.++..++..+....
T Consensus       128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999989999999999999999999899999999988766555444333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.89  E-value=4.2e-21  Score=204.49  Aligned_cols=175  Identities=13%  Similarity=0.205  Sum_probs=150.9

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHH
Q 007405           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (605)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~  142 (605)
                      .++.+|+.+...++..++..+..+.+.. ..+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            3456778777788888888877665544 45567889999999999999999999999999999999997 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 007405          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (605)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~  222 (605)
                      .++..++.+++.++                            .+.+.+++.|++.|++.+...+...+++.|.+|+++  
T Consensus        84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--  133 (405)
T TIGR00891        84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--  133 (405)
T ss_pred             HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence            99998888887765                            467888999999999999999999999999999988  


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHH
Q 007405          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISN  273 (605)
Q Consensus       223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~~~~~~~~i~~  273 (605)
                          |++..++++.+..+|..+++.+++.+.+..+  |++.|++.++..++.+
T Consensus       134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999999887766  9999987655544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.89  E-value=8.1e-22  Score=214.16  Aligned_cols=152  Identities=18%  Similarity=0.264  Sum_probs=127.8

Q ss_pred             HHHHHHHhCCC--------hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007405           93 VTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (605)
Q Consensus        93 ~~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (605)
                      ...+..+++.+        ..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.+....     
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~-----  124 (481)
T TIGR00879        51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA-----  124 (481)
T ss_pred             hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence            33445555555        88999999999999999999999999997 99999999999999988888664210     


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHH
Q 007405          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (605)
Q Consensus       165 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i  244 (605)
                                          .+.+.++++|+++|+|.+...+...++++|.+|+++      |++.+++++.+.++|..+
T Consensus       125 --------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~  178 (481)
T TIGR00879       125 --------------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILV  178 (481)
T ss_pred             --------------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHH
Confidence                                345688999999999999999999999999999999      999999999999999999


Q ss_pred             HHHHH---HHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          245 AFTLV---VYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       245 ~p~i~---~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      ++.++   ..+.+..+||+.|++.++..++.++..
T Consensus       179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            99998   666677899999999666555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.89  E-value=1e-20  Score=199.65  Aligned_cols=172  Identities=11%  Similarity=0.043  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHH-HHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI  153 (605)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~-~~~~~~~~~~~~  153 (605)
                      ++..++..++.....+.++.|+.+++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.+++ +.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3456677777777888899999999999999999999999999999999999999997 99887655 455555565666


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH--H
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F  231 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~--~  231 (605)
                      ..+                            .+.+.+++.|+++|.+.+...|...++..|..|++.      |...  .
T Consensus        82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~  127 (375)
T TIGR00899        82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS  127 (375)
T ss_pred             Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence            554                            456777888888888877778888888888877665      5543  5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      ++.....++|..++|.+++++.+..||++.|++.++..++..+..+...+
T Consensus       128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            67777889999999999999999899999999988776655554444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=9e-21  Score=200.34  Aligned_cols=157  Identities=20%  Similarity=0.180  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++...++++             
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------   79 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------   79 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence            3445568889999999999999999999999999999999997 99999999999999888888776             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~  249 (605)
                                     .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.....++|..++|.++
T Consensus        80 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~  138 (399)
T TIGR00893        80 ---------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV  138 (399)
T ss_pred             ---------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence                           467889999999999999999999999999999988      99999999999999999999999


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       250 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      +++.+..+|++.|++.++..++..+..+...+
T Consensus       139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893       139 GWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            99999899999999887776655554444333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.89  E-value=8.7e-21  Score=206.01  Aligned_cols=151  Identities=14%  Similarity=0.092  Sum_probs=127.2

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 007405           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (605)
Q Consensus        93 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  172 (605)
                      ...+.+++|++.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++                
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----------------  104 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS----------------  104 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence            4456789999999999999999999999999999999997 99999999999988888888775                


Q ss_pred             ccccCCCCCccchhHHHHHH-HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (605)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~  251 (605)
                                  .+.+.+++ .|++.|++.+...+...+++.+.++ ++      |+++.++.+.+..+|..++|.++++
T Consensus       105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~  165 (455)
T TIGR00892       105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY  165 (455)
T ss_pred             ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence                        35555554 4688899988766666778889885 56      9999999999999999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          252 IQMEHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       252 l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      +.+.+|||+.|++.+++.++..+..++.
T Consensus       166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       166 LFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999888776655544443

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=3e-20  Score=198.19  Aligned_cols=175  Identities=7%  Similarity=0.050  Sum_probs=145.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      .+++|..+...+..++.....+.+...++ .+.+++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~   80 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA   80 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            45666677776766666666554545444 46788999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      +..++.+++.++                            .+...+++.|+++|++.+...+...+++.|.+|+++    
T Consensus        81 ~~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----  128 (394)
T PRK03699         81 LMILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----  128 (394)
T ss_pred             HHHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence            988888888775                            467788899999999999888889999999999888    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHH
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~~~~~~~~i~~~~  275 (605)
                        |+..++..+....+|+.++|.+.+++.. ..|||+.|++.++..++..++
T Consensus       129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence              9999998888888999999999888764 569999999877665554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=4.5e-20  Score=195.39  Aligned_cols=178  Identities=18%  Similarity=0.164  Sum_probs=148.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +++..+...+..++...+.....+. .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPA-FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            3444555555555555554444444 4456788999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .++.+.+..+                            .+.+.+++.|++.|++.+...+...+++.|.+|+++      
T Consensus        81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------  126 (385)
T TIGR00710        81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------  126 (385)
T ss_pred             HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence            8888887765                            467788899999999999999999999999999888      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      |++.+++.+....+|..++|.+++++.+..+|++.|++.++..++..+......
T Consensus       127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999989999999988776665555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.89  E-value=1.3e-20  Score=195.91  Aligned_cols=345  Identities=18%  Similarity=0.197  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007405           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (605)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~  152 (605)
                      ......++..+..+.....++.|. +++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            345566677777766667666665 56799999999999999999999999999999997 9999999999999999888


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHH
Q 007405          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (605)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  232 (605)
                      +.++                            .+.+.++++|++.|++.+...+...++..|.+|+++      |++.++
T Consensus        81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  126 (352)
T cd06174          81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG  126 (352)
T ss_pred             HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence            8775                            467888999999999999999999999999999988      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHH-HHhhcccc
Q 007405          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA-FRKRHAAF  311 (605)
Q Consensus       233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~  311 (605)
                      +.+...++|..++|.+++.+.+..+|++.|++.++..++..+......             +......... ...-.   
T Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---  190 (352)
T cd06174         127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFFLLSFG---  190 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhH---
Confidence            999999999999999999999988999999988877666655544332             1111000000 00000   


Q ss_pred             CccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHH
Q 007405          312 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI  391 (605)
Q Consensus       312 p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  391 (605)
                       ..    .+.                    .+...  .. ...         .   ...+...  .... . ........
T Consensus       191 -~~----~~~--------------------~~~~~--~~-~~~---------~---~~~~~~~--~~~~-~-~~~~~~~i  226 (352)
T cd06174         191 -YY----GLL--------------------TYLPL--YL-QEV---------L---GLSAAEA--GLLL-S-LFGLGGIL  226 (352)
T ss_pred             -HH----HHH--------------------HHHHH--HH-HHh---------c---CCCHHHH--HHHH-H-HHHHHHHH
Confidence             00    000                    00000  00 000         0   0000000  0000 0 00000000


Q ss_pred             HhhhhhHHHHHHhhhccCCCCeeeCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCc
Q 007405          392 LTEFLTLSVQQAYTMNTHMGKLKLPVTCHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  470 (605)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (605)
                       .   ....                 .+..++.+.++ .+..+..+..++.+.....                       
T Consensus       227 -~---~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------  262 (352)
T cd06174         227 -G---ALLG-----------------GLLSDRLGRRRLLLLIGLLLAALGLLLLALA-----------------------  262 (352)
T ss_pred             -H---HHHH-----------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence             0   0000                 00111222223 4666777777776666543                       


Q ss_pred             chHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 007405          471 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  550 (605)
Q Consensus       471 ~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~  550 (605)
                      .+.+......++.+++.+...+....++.+..|++.|++++|+.+....+|..+++.+.+.+.+..        +|    
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~--------~~----  330 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG--------GY----  330 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------Cc----
Confidence            245667778888999999999999999999999999999999999999999999999999876522        23    


Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHH
Q 007405          551 INTGRFDYLYWLLAVLSVINFCAFL  575 (605)
Q Consensus       551 ~~~~~~~~~f~~~a~l~~v~~~~~~  575 (605)
                            ...|++.+++.++..++++
T Consensus       331 ------~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         331 ------GGVFLILAALALLAALLLL  349 (352)
T ss_pred             ------chHHHHHHHHHHHHHHHhe
Confidence                  4567777777777766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=6e-20  Score=196.96  Aligned_cols=152  Identities=15%  Similarity=0.101  Sum_probs=133.5

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccc
Q 007405           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ  174 (605)
Q Consensus        95 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  174 (605)
                      .+.+++|.+..++++.++++.++..++.+++|+++||+ |||++++.+.+++.++.+.+.++                  
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------  101 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------  101 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc------------------
Confidence            36788999999999999999999999999999999997 99999999999999998888875                  


Q ss_pred             ccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                                .+...++++|+++|++.+...+...+++.|.+|+++      |.+.+++++...++|..+||.+++++.+
T Consensus       102 ----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403        102 ----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      467889999999999988766777788899999988      9999999999999999999999999998


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          255 EHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       255 ~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      ..||++.|++.++..+++.+..+...+
T Consensus       166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        166 FVHWKVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            889999999988776666554333333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=1.1e-21  Score=204.65  Aligned_cols=167  Identities=20%  Similarity=0.262  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (605)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~  154 (605)
                      ++..++..+....+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++...+.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            3455666666666666666688999999999999999999999999999999999997 999999999999999855555


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHH
Q 007405          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (605)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~  234 (605)
                      ++                            .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.
T Consensus        81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~  126 (352)
T PF07690_consen   81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL  126 (352)
T ss_dssp             HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred             hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence            53                            244589999999999999999999999999999988      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       235 ~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      +...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus       127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~  168 (352)
T PF07690_consen  127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence            999999999999999999988899999999988887776643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.88  E-value=1.4e-20  Score=198.09  Aligned_cols=157  Identities=14%  Similarity=0.055  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007405           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (605)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (605)
                      .|.+ ..+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.++++        
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~--------   88 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA--------   88 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence            4433 4467788899999999999999999999999999999999997 99999999999999999888876        


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHH
Q 007405          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (605)
Q Consensus       165 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i  244 (605)
                                          .+.+.++++|++.|++.+...+.......+.+| ++      |++..+++..+.++|..+
T Consensus        89 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~  141 (377)
T TIGR00890        89 --------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFI  141 (377)
T ss_pred             --------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhH
Confidence                                578889999999999999888788888888886 45      899999999999999888


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       245 ~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ++.+.+.+.+..|||+.|++.++..++..+..+.
T Consensus       142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777789999999888776665554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.88  E-value=9.5e-20  Score=194.16  Aligned_cols=162  Identities=14%  Similarity=0.062  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++.++...++..++...+...++. +.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||++++++.+++.++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence            455666667766654444444443 4678999999999999999999999999999999997 99999999999998887


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +.+.++                            .+.   ++.|+++|++.+...|...+++.|.+|+++      |+++
T Consensus        83 ~~~~~~----------------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a  125 (393)
T PRK11195         83 LLMLFG----------------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA  125 (393)
T ss_pred             HHHHHH----------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            776654                            232   678899999999999999999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~  272 (605)
                      .++.....++|..+||.++|++.+. .|+..+++.+...+++
T Consensus       126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999885 4777776665544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.88  E-value=3.6e-20  Score=201.18  Aligned_cols=157  Identities=11%  Similarity=0.061  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007405           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (605)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  170 (605)
                      ...+|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+.++++..     ..     
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~-----~~-----  117 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW-----AT-----  117 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----cc-----
Confidence            445577777 99999999999999999999999999999997 9999999999998888887776411     00     


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHH-HHHHHH
Q 007405          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV  249 (605)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-i~p~i~  249 (605)
                                    .+...+++.|++.|++.+...+.....+.|++|+++      |++++++++.+.++|+. .+|+++
T Consensus       118 --------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~  177 (452)
T PRK11273        118 --------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL  177 (452)
T ss_pred             --------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence                          256678888999999999988888888999999998      99999999999998875 455544


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       250 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      ..+....+|++.|++.+++.++..++.++.
T Consensus       178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~  207 (452)
T PRK11273        178 LGMAWFNDWHAALYMPAFAAILVALFAFAM  207 (452)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444589999998877665554444333

>PRK09952 shikimate transporter; Provisional

Probab=99.88  E-value=9.6e-20  Score=196.95  Aligned_cols=178  Identities=16%  Similarity=0.151  Sum_probs=130.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHH-----HHHHHHHHHhhhHHHHHhhhccchHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYW  137 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~GR~~  137 (605)
                      ..+++.++..++..+++...+..+....+.++.+++  +.++.+ ++..     ++..++..++.++.|+++||+ |||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~   95 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence            344566666777777777776554444455666665  677663 4332     223344567778889999997 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (605)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~  217 (605)
                      ++.++.+++.++.++++++.+.....                    -.....+++.|+++|++.|+..+....++.|.+|
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  155 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP  155 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence            99999999999999988862210000                    0112358889999999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchHHHHHHHHHHHH
Q 007405          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG  270 (605)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~~~~~~~~  270 (605)
                      +++      |+...+....+..+|..++..+..++.        ..+|||+.|++.++..+
T Consensus       156 ~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        156 KNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             CCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            998      999988888888888888877766654        24799999998766543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=8.4e-20  Score=194.65  Aligned_cols=176  Identities=13%  Similarity=0.074  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHhhhHHHHHhhhccchHHHHH-HHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA-IFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~GR~~~~~-~~~~~~~  147 (605)
                      ..+..++..++..++...+.+.++.|+.+++|++.++.+++.+.+.+ +..++++++|+ +||+ ||||.++ .+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            46667777888888888888999999999999999999998876655 55555666666 9997 9988755 4455544


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++..+.+++                            .+.+.+++.+.+.+...+...|...++..|..++++      |
T Consensus        94 ~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  139 (393)
T PRK15011         94 LACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------R  139 (393)
T ss_pred             HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------c
Confidence            555555554                            345555544444443344667778888888776655      4


Q ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          228 D--RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       228 ~--~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      .  ...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..+......+
T Consensus       140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3  34467888899999999999999999899999999887766555554444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=5.4e-21  Score=208.53  Aligned_cols=157  Identities=15%  Similarity=0.066  Sum_probs=129.4

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 007405           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (605)
Q Consensus        92 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  171 (605)
                      ..+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+..+.....            
T Consensus        51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~------------  117 (467)
T PRK09556         51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS------------  117 (467)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc------------
Confidence            35567889999999999999999999999999999999997 99999999888877777666542100            


Q ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (605)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~  251 (605)
                                 ...+...+++.|+++|++.+...+...++++|++|+++      |++.++++..+.++|..+++.+..+
T Consensus       118 -----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        118 -----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             -----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHH
Confidence                       00468889999999999999999999999999999999      9999999999999999999998887


Q ss_pred             HHhhh---chHHHHHHHHHHHHHHHHHHHH
Q 007405          252 IQMEH---GWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       252 l~~~~---gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +....   +|+..|.+.++..++..++.+.
T Consensus       181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        181 GANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             HHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            76643   5888888766665544443333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.88  E-value=8e-20  Score=197.31  Aligned_cols=177  Identities=16%  Similarity=0.215  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHH---HHHHhhhHHHHHhhhccchHHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLG---ISQASSVLGGFLADAYLGRYWTIAI  141 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~---~~~~~~~~~G~laD~~~GR~~~~~~  141 (605)
                      ++.+....+..+++.+.+.. ...+.+++.++++   .+..+.+.....+..   +..++.+++|+++||+ |||+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~   98 (432)
T PRK10406         21 IWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHH
Confidence            33444444556667777544 5667778888885   455544444444444   4448899999999997 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 007405          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~  221 (605)
                      +.+++.++.++++++.......                    -.....+++.|+++|++.|+..+...++++|.+|+++ 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-  157 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR-  157 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-
Confidence            9999999999988752110000                    0134578899999999999999999999999999998 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchHHHHHHHHHHHHHH
Q 007405          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGIS  272 (605)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~~~~~~~~i~  272 (605)
                           |+...++.+.+.+.|..+++.+...+.        ..+|||+.|++.++..++.
T Consensus       158 -----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        158 -----KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence                 999999988888888888887655543        2579999999876655443

>TIGR00898 2A0119 cation transport protein

Probab=99.88  E-value=5.7e-21  Score=210.42  Aligned_cols=145  Identities=12%  Similarity=0.095  Sum_probs=128.0

Q ss_pred             HHHHHHhCCC---hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007405           94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (605)
Q Consensus        94 ~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  170 (605)
                      ..+.+++|++   ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++++++              
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~--------------  177 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS--------------  177 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3456789998   88999999999999999999999999997 99999999999999888888775              


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007405          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (605)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~  250 (605)
                                    .+.+.++++|++.|++.++..+...+++.|.+|+++      |+...+++..+..+|..++|.++.
T Consensus       178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  237 (505)
T TIGR00898       178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY  237 (505)
T ss_pred             --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          578889999999999999999999999999999999      999999998899999999998876


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          251 YIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       251 ~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      .+.+   ||+.|++.++..++..+..
T Consensus       238 ~~~~---wr~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       238 FIPD---WRWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             HhhH---HHHHHHHHHHHHHHHHHHH
Confidence            6654   9999998887766555544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=6.6e-20  Score=197.37  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=144.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      .+|+.+....+..+...+..+.. .++..++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            44555666666666666665443 4556677899999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+.+.++                            .+.+.++++|++.|++.+...+....++.|.+|+++     
T Consensus        93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~-----  139 (426)
T PRK12307         93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL-----  139 (426)
T ss_pred             HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence            99998888876                            567889999999999999999999999999999998     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~  268 (605)
                       |++..+++..+..+|..+++.+.+++.+..||++.|++..+.
T Consensus       140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence             999999999999999999999999998889999999875443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=9.1e-20  Score=193.52  Aligned_cols=153  Identities=16%  Similarity=0.179  Sum_probs=136.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      .+.++.+++..++..++...+.+.++.|+. ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            345788888888988888778888888876 6899999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++...++++                            .+.+.++++|++.|++.+...+...+.+.|..++++      |
T Consensus        83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~  128 (381)
T PRK03633         83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R  128 (381)
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence            988887775                            467888999999999999988888888888888887      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~  256 (605)
                      ++.+++++...++|..+||.+++++.+..
T Consensus       129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        129 GRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999987654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.2e-20  Score=192.00  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLS---VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      +.++...++.+.+||.+.   ....+++.++.++|.+|.+.+.+.+.+.+.++-.+.|.++||. +.|+.+-+++++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            567777888888888764   4467789999999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      ..++++++                            .+...+.+..++.|+.+|.-.|.....++.+|++++      ||
T Consensus       107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG  152 (448)
T COG2271         107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG  152 (448)
T ss_pred             HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence            99999987                            567788888899999999999999999999999999      99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~--~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      +..++++.+.|+|+++.|.+.  +++..+.+||..|+++++++++..++.+..
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999  899988899999999998876555554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.87  E-value=1.3e-19  Score=193.19  Aligned_cols=175  Identities=14%  Similarity=0.108  Sum_probs=144.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      +.+|..+......++..+..+...+. .+++.+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~-~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPA-IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            35666666666666666665444444 4456789999999999999999999999999999999997 999999999998


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+.+..+                            .+...+++.|++.|++.+...+....+..|.++.++     
T Consensus        83 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  129 (394)
T PRK11652         83 FILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ-----  129 (394)
T ss_pred             HHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH-----
Confidence            88888877765                            467788999999999998887888888899988877     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                       |++..+++..+..++..++|.+++++.+..||++.|++.++..++..+..
T Consensus       130 -~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  179 (394)
T PRK11652        130 -LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM  179 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999988899999998776655444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.87  E-value=6.8e-20  Score=201.33  Aligned_cols=168  Identities=14%  Similarity=0.212  Sum_probs=145.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      +.+|+.+..+.+..++..+..+.+ ..+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            456666666666666666665444 4455677889999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      +..++.+.+.++                            .+.+.++++|++.|++.++..+...+++.|.+|+++    
T Consensus        94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  141 (496)
T PRK03893         94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL----  141 (496)
T ss_pred             HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence            999988888875                            467889999999999999999999999999999988    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~  268 (605)
                        |++.+++++...++|..++|.+.+++.+..+|++.|++.++.
T Consensus       142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence              999999999999999999999999999999999999875443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=4.6e-21  Score=203.44  Aligned_cols=383  Identities=14%  Similarity=0.074  Sum_probs=243.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH
Q 007405          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (605)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  187 (605)
                      +.+++++.++++++..++|+++||+ |||..++++.++..++.++..++...                         ...
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~  116 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF  116 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence            4677889999999999999999997 99999999999988888887776321                         467


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HH-HhhhchHHHHHHH
Q 007405          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-YI-QMEHGWGSAFGAL  265 (605)
Q Consensus       188 ~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~-~l-~~~~gw~~~f~~~  265 (605)
                      .+++++|++.|+..|......+.++.|..|.+-      ||..-.+..++..+|-.++..++. .+ .....|++.+.+.
T Consensus       117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence            899999999999999999999999999999999      999999999999999999866552 33 3445699888888


Q ss_pred             HHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccccccccc-cCCCcccccCCcccccCCCcchh
Q 007405          266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL  344 (605)
Q Consensus       266 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~  344 (605)
                      .+.+++.++...+                                +||||+| |+. +++.++|++..+.++..++.+..
T Consensus       191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence            8777666665544                                7999999 776 78888888887777655432221


Q ss_pred             hHh---hhhhccccC-CC-CCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccC--------CC
Q 007405          345 DKA---ALELKEDVI-NP-SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH--------MG  411 (605)
Q Consensus       345 ~~~---~~~~~~~~~-~~-~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  411 (605)
                      ..+   ......... .. ..+++++..  ..++.+...+.+.+.+++-.......+++......++...        .+
T Consensus       238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g  315 (485)
T KOG0569|consen  238 IEEMLREIEEEELEKKKQISLRQLLKNP--TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG  315 (485)
T ss_pred             HHHHHHHHHHhccccccCCcHHHHhcCc--chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            111   111111100 11 111111111  1111111111111122211111111111111111111111        01


Q ss_pred             CeeeCC----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHH-HHHHHHHHH-
Q 007405          412 KLKLPV----TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL-LIQYCLIGI-  485 (605)
Q Consensus       412 ~~~ip~----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l-v~~~~l~g~-  485 (605)
                      .+.++.    ....++.+++..+.+++.++.++.+.+...........             +  ...+. +...++..+ 
T Consensus       316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-------------~--~~~y~~i~~~~~~~~~  380 (485)
T KOG0569|consen  316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG-------------S--WLSYLCIAAIFLFIIS  380 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------h--HHHHHHHHHHHHHHHh
Confidence            111111    12223333334455566655555555554433211100             0  11122 222222222 


Q ss_pred             HhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHH
Q 007405          486 AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV  565 (605)
Q Consensus       486 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~  565 (605)
                      -.....|..+-+..|.+|++.|+.++++....+++.+++-....+.+.+..|                   .++|+.+++
T Consensus       381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------------~~~filF~i  441 (485)
T KOG0569|consen  381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------------PYVFILFVI  441 (485)
T ss_pred             hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------chhhHHHHH
Confidence            2334467778888899999999999999999999999999999999988766                   257888889


Q ss_pred             HHHHHHHHHHHHHhhceecccCCCCC
Q 007405          566 LSVINFCAFLYSAYRYKYRSEQKHGN  591 (605)
Q Consensus       566 l~~v~~~~~~~~~~~~~~~~~~~~~~  591 (605)
                      .+++..+..+...+++|+|+.+|+.+
T Consensus       442 ~~~~~~i~~~~~lPETkgr~~~eI~~  467 (485)
T KOG0569|consen  442 PLAIFLIYLYRYLPETKGRTPYEIIE  467 (485)
T ss_pred             HHHHHHHHHHHhCcccCCCCHHHHHH
Confidence            99999999999999999998765433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.87  E-value=6.2e-20  Score=200.11  Aligned_cols=148  Identities=15%  Similarity=0.149  Sum_probs=130.0

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007405           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (605)
Q Consensus        99 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  178 (605)
                      +++++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++.++..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999997 9999999999988888777654421                    


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c
Q 007405          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G  257 (605)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-g  257 (605)
                            .+...+++.|+++|++.+...+....+++|++|+++      |+++.++.+.+.++|..++|.+++++.+.. |
T Consensus       129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g  196 (465)
T TIGR00894       129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG  196 (465)
T ss_pred             ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                  245678899999999999999999999999999999      999999999999999999999999999884 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 007405          258 WGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       258 w~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      |++.|++.++..++..++++..
T Consensus       197 w~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       197 WPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             CCeehhhhhHHHHHHHHHHHHH
Confidence            9999999887766555544443

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=1.4e-19  Score=191.95  Aligned_cols=181  Identities=16%  Similarity=0.110  Sum_probs=147.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      +.+|+.+...++..+......+ ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence            3445555555555555544443 344456677788999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      +..++.+++.++                            .+.+.+++.+++.|++.+...+...++++|.+|+++    
T Consensus        91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  138 (398)
T TIGR00895        91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----  138 (398)
T ss_pred             HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence            888888777764                            466788899999999999999999999999999988    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                        |++.+++...+..+|..++|.+++++.+..||++.|++.++...+..++.....+
T Consensus       139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (398)
T TIGR00895       139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP  193 (398)
T ss_pred             --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCC
Confidence              9999999999999999999999999999999999998876555444444433333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=4.1e-19  Score=193.99  Aligned_cols=176  Identities=15%  Similarity=0.085  Sum_probs=135.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      ++++.+.......++.....+.+.. +.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~  110 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLML  110 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            3455555555555555555554443 44577889999999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.++++++                            .+...++++|++.|++.+... ....+++|++|+++     
T Consensus       111 ~~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~-----  156 (476)
T PLN00028        111 TAPAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI-----  156 (476)
T ss_pred             HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh-----
Confidence            88888777765                            456778889999999988654 34567899999998     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH----h-----hhchHHHHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~----~-----~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                       |++++++.+...++|..+++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       157 -rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        157 -VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             -eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence             999999988777778777766655442    2     248999999988776655544443

>TIGR00897 2A0118 polyol permease family

Probab=99.86  E-value=8.5e-19  Score=187.50  Aligned_cols=172  Identities=13%  Similarity=0.067  Sum_probs=140.5

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~  143 (605)
                      +-+-||.+....+..++..++.+....+++.|+ +++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~   85 (402)
T TIGR00897         8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL   85 (402)
T ss_pred             HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence            345566777888888888888777777888888 67899999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      ++..++.+++.....     ..                   .+...+++.|++.|+|.+...+...+.+.+.+|+++   
T Consensus        86 ~~~~~~~~~~~~~~~-----~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---  138 (402)
T TIGR00897        86 LLWCVGHAAFIVFGL-----GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---  138 (402)
T ss_pred             HHHHHHHHHHHHHhc-----cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---
Confidence            998888765532110     00                   256677888999999988877777888899999988   


Q ss_pred             hhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhchHHHHHHHHH
Q 007405          224 KTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAI  267 (605)
Q Consensus       224 ~~~r~~~~~~~~~~~~ig~-~i~p~i~~~l~~~~gw~~~f~~~~~  267 (605)
                         |+++.++++.+.++|. .++|.+++++.+..||+..++....
T Consensus       139 ---~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       139 ---LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence               9999999999999996 5899999999888887655554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.86  E-value=7.7e-19  Score=186.50  Aligned_cols=350  Identities=9%  Similarity=-0.007  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH-HHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGL  150 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~-~~~~~  150 (605)
                      +.+.+..++...++....++++.|+ +++|+|..+.+++.+.+.+...+++++.|+++||+ ||+........+ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            3344555666666555667788888 56899999999999999999999999999999997 985433222111 11111


Q ss_pred             H-HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          151 T-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      + .+..+                            .+.+.+++.|++++.+.+...|...++..|.  .++      |++
T Consensus        85 ~~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~  128 (382)
T TIGR00902        85 AAFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGL  128 (382)
T ss_pred             HHHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCC
Confidence            1 11122                            4678888899999999888888888876543  344      788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  309 (605)
                      .++......++|..++|.+++++.+.+||+..|++..+..++.++. ....++.++.++ ++.                 
T Consensus       129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-----------------  189 (382)
T TIGR00902       129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIPPKDA-IPE-----------------  189 (382)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCCCCcc-ccc-----------------
Confidence            8899999999999999999999999999999988765543332222 222111000000 000                 


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHH
Q 007405          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (605)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  389 (605)
                                      ++         .....+..                      +-.++ |+++..+   +...+.+
T Consensus       190 ----------------~~---------~~~~~~~~----------------------~~l~~-~~~~~~l---~~~~l~~  218 (382)
T TIGR00902       190 ----------------DE---------SQGDSAFI----------------------ALLKN-PMNLRFL---AAVCLIQ  218 (382)
T ss_pred             ----------------cc---------cccchhHH----------------------HHHcC-hHHHHHH---HHHHHHH
Confidence                            00         00000000                      00011 1121111   1111122


Q ss_pred             HHHhhhhh---HHHHHHhhhccCCCCee--------eC----CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          390 VILTEFLT---LSVQQAYTMNTHMGKLK--------LP----VTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  454 (605)
Q Consensus       390 ~~~~~~~~---~~~~~~~~~~~~~~~~~--------ip----~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~  454 (605)
                      .......+   .+.+ ..+.+....++.        ++    .++..+|.+.++.+.+|.++.++..+..+..       
T Consensus       219 ~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------  290 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------  290 (382)
T ss_pred             HHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------
Confidence            22222222   2222 122222211110        11    1455677788887888888888887766654       


Q ss_pred             hhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhh
Q 007405          455 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIK  533 (605)
Q Consensus       455 ~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~l~~~l~~~i~  533 (605)
                                      .+.+.++...++.+++.++..+....++.+. |++.|+.++++++ ...++|..+++.+.|.+.
T Consensus       291 ----------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       291 ----------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            3556666677899999999999999999988 9999999999987 577899999999999887


Q ss_pred             cccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHH
Q 007405          534 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA  573 (605)
Q Consensus       534 ~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~  573 (605)
                      +..+                   ...|++.+++.++++++
T Consensus       354 ~~~g-------------------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       354 PTLG-------------------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             Hhcc-------------------HHHHHHHHHHHHHHHHH
Confidence            7433                   24677777777766444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.86  E-value=2.1e-19  Score=194.45  Aligned_cols=159  Identities=11%  Similarity=0.052  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007405           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (605)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  170 (605)
                      ...+++++ +|.++++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+......     .     
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----  115 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA-----T-----  115 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc-----c-----
Confidence            34456665 599999999999999999999999999999997 99999999988888887776553110     0     


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007405          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (605)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~  250 (605)
                                    .+...+++.|++.|++.+...+.....+.|.+|+++      |++++++++...++|+.++|.+.+
T Consensus       116 --------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712       116 --------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             --------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHH
Confidence                          245667788999999999988888999999999999      999999999999999999988877


Q ss_pred             HHH-hhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          251 YIQ-MEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       251 ~l~-~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      .+. +..+||+.|++.++..++..+..++..+
T Consensus       176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            644 4568999999988776665544444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.86  E-value=1.4e-18  Score=185.04  Aligned_cols=171  Identities=16%  Similarity=0.100  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~  153 (605)
                      ..+..+....++....+. .+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++++.+++.++.+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHHHHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence            344444445554444444 4456678999999999999999999999999999999997 99999999999998888887


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      ..+                            .+...++++|+++|++.+...+...+++.|.+|+++      |++.+++
T Consensus        86 ~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~  131 (392)
T PRK10473         86 SLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSL  131 (392)
T ss_pred             HHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            765                            456778889999999999988899999999999998      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      .+...++|..++|.+++++.+..||++.|++.++..++..++.+...
T Consensus       132 ~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  178 (392)
T PRK10473        132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFIL  178 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999988888999999988776655555444433

>PRK11043 putative transporter; Provisional

Probab=99.86  E-value=1.1e-18  Score=186.32  Aligned_cols=162  Identities=16%  Similarity=0.235  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHH--HHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007405           81 ERMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (605)
Q Consensus        81 ~~~~~~~~~~~l~~y--l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~  158 (605)
                      ...+++....++|.+  +.+++|.+..+.++..+++.++..++.++.|+++||+ |||+++.++.++..++.+.+.++  
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--   91 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV--   91 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh--
Confidence            333444444444443  6789999999999999999999999999999999997 99999999998888888777765  


Q ss_pred             ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHH
Q 007405          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (605)
Q Consensus       159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  238 (605)
                                                .+.+.+++.|+++|++.+...+...+++.|.+++++      +.+.++..+...
T Consensus        92 --------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  139 (401)
T PRK11043         92 --------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLV  139 (401)
T ss_pred             --------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHH
Confidence                                      467788899999999988877888889999999887      888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 007405          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       239 ~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (605)
                      ++|..++|.+++++.+..||++.|++.++..++..+..+
T Consensus       140 ~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        140 ALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988776665554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.85  E-value=7.5e-19  Score=189.83  Aligned_cols=176  Identities=15%  Similarity=0.085  Sum_probs=130.1

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-HHHHHHH-----HHHhhhHHHHHhhhccchHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA-VNNFLGI-----SQASSVLGGFLADAYLGRYW  137 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~-~~~~~~~-----~~~~~~~~G~laD~~~GR~~  137 (605)
                      +..+|+.....++..+++.+....+ ..+.+++.++++.+..+.+.. .+.....     ..++.++.|+++||+ |||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~   87 (434)
T PRK15075         10 RESKARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRK   87 (434)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHH
Confidence            3345556677777777777776544 445668888999887765433 3322222     235778899999997 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (605)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~  217 (605)
                      +++++.+++.++.++++++.+...+.                    ......++++|+++|++.+...++...+++|++|
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  147 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT  147 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence            99999999999999988762100000                    0001256889999999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchHHHHHHHHH
Q 007405          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI  267 (605)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~~~~~  267 (605)
                      +++      |++..++.....++|..+++.+++.+.        +.+|||+.|++..+
T Consensus       148 ~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        148 PGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            999      999999988888888888887777652        46799999987543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.85  E-value=3.2e-19  Score=191.83  Aligned_cols=378  Identities=10%  Similarity=-0.019  Sum_probs=215.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ..|......++..++++.+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||++++++..+..++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL   89 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            466667777888888778899999999999999999999999999999999999999999997 9999998876665554


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      ..........+....                    ......+++.++.|.+.....+....+.. .++ ++      ++.
T Consensus        90 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~------~g~  141 (420)
T PRK09528         90 FGPFFIYVFAPLLQY--------------------NILLGAIVGGIYLGFGFLAGAGAIEAYIE-RVS-RR------SGF  141 (420)
T ss_pred             HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhhhhccchhhhhhHHH-HHH-hh------ccc
Confidence            432221100000000                    01111122233333333333333333221 111 12      566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  309 (605)
                      .++......++|..++|.+++++.+ .+|++.|++.++..++.+++.+..+++.++++...+                  
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  202 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN------------------  202 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc------------------
Confidence            6777777889999999999999876 489999988777666555544433322111000000                  


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHH
Q 007405          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (605)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  389 (605)
                                      ++ .+      ..+.....+..  .                 ..+ .+.+.......+.....+
T Consensus       203 ----------------~~-~~------~~~~~~~~~~~--~-----------------~l~-~~~~~~l~l~~~~~~~~~  239 (420)
T PRK09528        203 ----------------AL-GA------NASAVSLKDAL--A-----------------LLK-LPKFWFLVLYVIGVACFY  239 (420)
T ss_pred             ----------------ch-hc------ccccccHHHHH--H-----------------Hcc-CCCeEeehHHHHHHHHHH
Confidence                            00 00      00000000000  0                 000 011111111111111122


Q ss_pred             HHHhhhhhHHHHHHh---hhccCCCCe------------eeCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          390 VILTEFLTLSVQQAY---TMNTHMGKL------------KLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  454 (605)
Q Consensus       390 ~~~~~~~~~~~~~~~---~~~~~~~~~------------~ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~  454 (605)
                      ..+.+....+..+..   +.+....+.            .+..++..+|.+.++.+.++.++.+++++.+++.       
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------  312 (420)
T PRK09528        240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------
Confidence            222222222221111   111110000            0011333444444455666666666666555443       


Q ss_pred             hhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHH-HHHHhhHHHHHHHHHHHHhh
Q 007405          455 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIK  533 (605)
Q Consensus       455 ~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~l~~~l~~~i~  533 (605)
                                      .+.++++...++.+++.....+....++.+..|++.+++..+. +++...+|..+++.+.+.+.
T Consensus       313 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        313 ----------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence                            3455666667778888888888888899999999999987765 67788999999999999887


Q ss_pred             cccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007405          534 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  579 (605)
Q Consensus       534 ~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  579 (605)
                      +..|        |          ...|++.+++.++..++.+...+
T Consensus       377 ~~~G--------~----------~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        377 DSIG--------F----------QGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HhhC--------c----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            7333        3          56788777777766666555443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.1e-21  Score=197.18  Aligned_cols=182  Identities=18%  Similarity=0.221  Sum_probs=165.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      +..++.+..++++.+++++.-|.+.. .-.-+++.+|.+++..+++.+.+.+...+..|+.|+|+||| -|++++.+|.+
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            44456788899999999999988776 45567788999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      ++.+++++++++                            ..++++.+.|.+.|+|.+.+.+..+++++|.||.+.    
T Consensus       107 iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----  154 (493)
T KOG1330|consen  107 IWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----  154 (493)
T ss_pred             HHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh----
Confidence            999999999987                            578999999999999999999999999999999999    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                        |++.++++|++.++|.++|..+++++.+..+ |||+|+..+++.++..++.++..++
T Consensus       155 --Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  155 --RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             --hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence              9999999999999999999999999988777 9999999999887777766665554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=8.7e-20  Score=201.17  Aligned_cols=408  Identities=13%  Similarity=0.122  Sum_probs=247.5

Q ss_pred             HHHHHHHHHHHHHh-----CCCh--hHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405           87 GLSVNMVTFMFYVM-----HKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (605)
Q Consensus        87 ~~~~~l~~yl~~~~-----~~s~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~  159 (605)
                      +..+.+..++.+..     ..+.  .+.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++   
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a---  139 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA---  139 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh---
Confidence            44555555555532     1112  2448999999999999999999999997 99999999999999999999998   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHH
Q 007405          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (605)
Q Consensus       160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~  239 (605)
                                               .+..+++++|++.|+|.|+.....+.+++|..|++.      |+...+.+....+
T Consensus       140 -------------------------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~  188 (513)
T KOG0254|consen  140 -------------------------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFIT  188 (513)
T ss_pred             -------------------------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHH
Confidence                                     688999999999999999999999999999999999      9999999999999


Q ss_pred             HHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccccc
Q 007405          240 VGAIVAFTLVVYIQME--HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI  317 (605)
Q Consensus       240 ig~~i~p~i~~~l~~~--~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~  317 (605)
                      +|..++.. .++...+  .+||..+++..+..++..+..++                                .||+|+|
T Consensus       189 ~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~--------------------------------~pesp~~  235 (513)
T KOG0254|consen  189 IGILLGYC-INYGTSKVYAGWRIPLGLALIPAVILALGMLF--------------------------------LPESPRW  235 (513)
T ss_pred             HHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCChHH
Confidence            99999954 4444443  48998888777666555554222                                4677777


Q ss_pred             cccccCCCcccccCCcccccC--CCc-chhhHhhhhhccc---cCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHH
Q 007405          318 GLYEVPGKHSAIKGSGKIAHT--DDF-RCLDKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI  391 (605)
Q Consensus       318 ~l~~~~~~~~~~~~~~~l~~~--~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  391 (605)
                       +.++++.+++++...++...  .+. ...+.........   ......|+.+..  ...+|+......+..++++....
T Consensus       236 -L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~  312 (513)
T KOG0254|consen  236 -LIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGIN  312 (513)
T ss_pred             -HHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCc
Confidence             77777766666665555441  111 1111111000000   000001111111  01122222222222222221111


Q ss_pred             HhhhhhHHHHHHhhhccC-C-CC-----ee----eCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 007405          392 LTEFLTLSVQQAYTMNTH-M-GK-----LK----LPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY  460 (605)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~-~-~~-----~~----ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (605)
                      ....++....+..+.... . ..     ..    +...-..++.+++..+..|...+.+++++++.......    .+. 
T Consensus       313 ~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~----~~~-  387 (513)
T KOG0254|consen  313 YVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFAL----YYP-  387 (513)
T ss_pred             eEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhc----cCC-
Confidence            111111222222221111 0 00     00    00012223345556677788888888887776532210    000 


Q ss_pred             cccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCC
Q 007405          461 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK  540 (605)
Q Consensus       461 ~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~  540 (605)
                           .......+..++...++.........|....+..+.+|.+.|+.+.++....+++.+++-...........+   
T Consensus       388 -----~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~---  459 (513)
T KOG0254|consen  388 -----NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG---  459 (513)
T ss_pred             -----CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence                 000002223333333334444444555666788899999999999999999999999988777666544110   


Q ss_pred             CCCCCCCCCCCcCcchhHHHHHHHHHHHHHHH-HHHHHHhhceecccCCCCCch
Q 007405          541 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFC-AFLYSAYRYKYRSEQKHGNDY  593 (605)
Q Consensus       541 ~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~-~~~~~~~~~~~~~~~~~~~~~  593 (605)
                                     ....|+.+++++.+..+ +++++.+++|+++.||.+...
T Consensus       460 ---------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~  498 (513)
T KOG0254|consen  460 ---------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF  498 (513)
T ss_pred             ---------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence                           01345555666666666 788889999999887655433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.85  E-value=4.5e-18  Score=185.64  Aligned_cols=346  Identities=14%  Similarity=0.077  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      +..++...++.+++......-++-++ .++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+-++..+..
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVA   89 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Confidence            44455556666666544444444443 45667888899999999999999999999999997 99999999988877666


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +.+++....    ..                   .+.+.+++..++.|++.+...|+..+++.|+.|+++      ...+
T Consensus        90 ~~L~~l~~~----~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A  140 (524)
T PF05977_consen   90 LLLAVLAFF----GL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAA  140 (524)
T ss_pred             HHHHHHHHh----Cc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHH
Confidence            555543221    00                   356778888899999999999999999999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccc
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA  310 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  310 (605)
                      .++.....|+...+||.++|.+....|-.+.|.+.++..++.++.+...+++.+.++   .+.....+-+...++     
T Consensus       141 ~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~---~~~e~~~~~l~~G~r-----  212 (524)
T PF05977_consen  141 NALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS---LPRERFFSALREGLR-----  212 (524)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc---cchhhhhhhHHHHHH-----
Confidence            999999999999999999999999889889999988776665554433332211111   110011110100000     


Q ss_pred             cCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHH
Q 007405          311 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNV  390 (605)
Q Consensus       311 ~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  390 (605)
                                                              +..            .+  +..+..+  +...++..+...
T Consensus       213 ----------------------------------------yv~------------~~--~~l~~~l--~~~~~~~l~~~a  236 (524)
T PF05977_consen  213 ----------------------------------------YVR------------SS--PPLRSVL--LRSFLFNLFASA  236 (524)
T ss_pred             ----------------------------------------HHh------------cc--hHHHHHH--HHHHHHHHhhhH
Confidence                                                    000            00  0111111  111111111111


Q ss_pred             HHhhhhhHHHHHHhhhccCCCC--------------eeeCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          391 ILTEFLTLSVQQAYTMNTHMGK--------------LKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI  456 (605)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~--------------~~ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~  456 (605)
                      .. .+...+..+..+.+....|              +.+  .+..++.+..+.+..+.++.+++++.+++.         
T Consensus       237 ~~-aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~--~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---------  304 (524)
T PF05977_consen  237 VW-ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLL--PRLRRRLSSRRLVLLASLLFALALLLLALS---------  304 (524)
T ss_pred             HH-HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH--HHhhcccCcchhhHHHHHHHHHHHHHHhcc---------
Confidence            11 1112222222222111101              111  233334444455666777777776666654         


Q ss_pred             hcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 007405          457 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  536 (605)
Q Consensus       457 ~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~  536 (605)
                                    .+.+..++..++.|++.....+..++.+.+.+|+++||++++++.+....+..+|+.+.|.+.+..
T Consensus       305 --------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  305 --------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          356667778888999999999999999999999999999999999999999999999999987754


Q ss_pred             C
Q 007405          537 G  537 (605)
Q Consensus       537 ~  537 (605)
                      |
T Consensus       371 g  371 (524)
T PF05977_consen  371 G  371 (524)
T ss_pred             C
Confidence            4

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.85  E-value=2.6e-18  Score=181.79  Aligned_cols=158  Identities=17%  Similarity=0.214  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      ...+.++.+. +++|+++.+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+.+.++          
T Consensus         9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------   76 (377)
T PRK11102          9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------   76 (377)
T ss_pred             HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH----------
Confidence            3445566555 57999999999999999999999999999999997 99999999999999988888775          


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+....+|..++|
T Consensus        77 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~  132 (377)
T PRK11102         77 ------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAP  132 (377)
T ss_pred             ------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              466788899999999999999999999999999988      99999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       247 ~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      .+++++.+..+|++.|++.++..++..+......
T Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T PRK11102        133 IIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI  166 (377)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999989999999987777666554444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.1e-19  Score=194.98  Aligned_cols=355  Identities=18%  Similarity=0.218  Sum_probs=233.5

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 007405           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (605)
Q Consensus        98 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  177 (605)
                      .+++++..+-+++.+.+..++.++..++|+++||+ |-|+++.++.++.++++++..+++.                   
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------  125 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------  125 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            36889999999999999999999999999999998 9999999999999999999998854                   


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Q 007405          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-H  256 (605)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~-~  256 (605)
                             .+.+.+++.|+++|++.|...|++..+.+.+.|++|      |+++.++.+.+..+|.+++..++|++.+. .
T Consensus       126 -------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~  192 (466)
T KOG2532|consen  126 -------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSL  192 (466)
T ss_pred             -------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCC
Confidence                   455578899999999999999999999999999999      99999999999999999999999999998 9


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccccccccccCCCcccccCCcccc
Q 007405          257 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA  336 (605)
Q Consensus       257 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~  336 (605)
                      ||+++|++.+++.++..++++....+.+.+    ++..                 .+++.. .++.+             
T Consensus       193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~----h~~i-----------------s~~El~-~I~~~-------------  237 (466)
T KOG2532|consen  193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSK----HPNI-----------------SEKELK-YIEKG-------------  237 (466)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCCccc----CCCC-----------------CHHHHH-HHHhc-------------
Confidence            999999999998887777766654432211    1100                 000000 01100             


Q ss_pred             cCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHH------HHHHhhhhhHHHHHHhhhccCC
Q 007405          337 HTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML------NVILTEFLTLSVQQAYTMNTHM  410 (605)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  410 (605)
                                 +...........||+           .+++..++|...+..      +..+.+....|..+..++|...
T Consensus       238 -----------k~~~~~~~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~  295 (466)
T KOG2532|consen  238 -----------KSEAHVKKKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE  295 (466)
T ss_pred             -----------ccccccCCCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh
Confidence                       000000000123542           233333333222211      1122223334556666666655


Q ss_pred             CCe--eeCC--------------CC---CCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCC
Q 007405          411 GKL--KLPV--------------TC---HPRGASQLQRV--GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  469 (605)
Q Consensus       411 ~~~--~ip~--------------~~---~~~~~~~~~~i--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (605)
                      .|+  .+|.              ++   +....+..+|+  .+++...++.++.+++..                    .
T Consensus       296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~--------------------~  355 (466)
T KOG2532|consen  296 TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS--------------------D  355 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC--------------------C
Confidence            554  2333              11   11222333344  455555555555555441                    0


Q ss_pred             cchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 007405          470 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  549 (605)
Q Consensus       470 ~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~  549 (605)
                       ...+..+..+.+.-...++..++.+.-..+.+| +.-+..+|+.+....+..+++|.+++.+..     +++..+|   
T Consensus       356 -~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-----~~t~~eW---  425 (466)
T KOG2532|consen  356 -EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-----DNTREEW---  425 (466)
T ss_pred             -CcchHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-----CCCHHHH---
Confidence             111122222222112223333344433333365 557999999999999999999999998764     1123456   


Q ss_pred             CCcCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007405          550 NINTGRFDYLYWLLAVLSVINFCAFLYSAY  579 (605)
Q Consensus       550 ~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  579 (605)
                             ..+|++.+++.++..++|.++.+
T Consensus       426 -------~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  426 -------RIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             -------HHHHHHHHHHHHHhchheeEeec
Confidence                   67899999999999988888853

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=2.3e-18  Score=208.21  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      .+...+...++..+...+....+..++...++.+..  ..+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence            345555666666665555555666677777776544  367888999999999999999999997 99999999987776


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.++..++...                         .+++.++++|+++|++.+...+...++++|.+|+++      |
T Consensus        89 ~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r  137 (1146)
T PRK08633         89 GLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L  137 (1146)
T ss_pred             HHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence            666555443210                         357889999999999999999999999999999998      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~  255 (605)
                      +++++++..+.++|.++||.+++++.+.
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998875

>PRK10133 L-fucose transporter; Provisional

Probab=99.84  E-value=4.2e-18  Score=183.90  Aligned_cols=154  Identities=13%  Similarity=-0.021  Sum_probs=124.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      ....+..+....+...+........ .+.+++++|.++.+.++..+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~-~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            4445566666666666665444444 4456999999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .++.+++..+...                         .+...++++|+++|+|.|...+..++++.|..++++      
T Consensus       102 ~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------  150 (438)
T PRK10133        102 ALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------  150 (438)
T ss_pred             HHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence            9999876422110                         467889999999999999999999999999766665      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~  253 (605)
                      |...++++.....+|..+||.+++.+.
T Consensus       151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        151 GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666788888888899999998877654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.84  E-value=1.7e-18  Score=184.73  Aligned_cols=375  Identities=10%  Similarity=-0.023  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .+|......++...+...+.++++.|+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.+...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            467777888888888888889999999999999999999999999999999999999999997 9999999887766554


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      ..........+.. .                   ......+++++++.|++.+...+....+..|..+  +      ++.
T Consensus        82 ~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~  133 (396)
T TIGR00882        82 FAPFFIYVFGPLL-Q-------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF  133 (396)
T ss_pred             HHHHHHHHhhhHH-H-------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence            4432211000000 0                   0123345666788888888888888777766422  2      334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  309 (605)
                      .++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.+...++.++. ++.+   +              
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~--------------  194 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS-ATVA---N--------------  194 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh-hhhh---c--------------
Confidence            5566667778999999999998865 5999999988776665554433322221100 0000   0              


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHH
Q 007405          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (605)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  389 (605)
                               ..+.+             + +..+..+..                   +..++ |.++..+.........+
T Consensus       195 ---------~~~~~-------------~-~~~~~~~~~-------------------~~l~~-~~~~~~~l~~~~~~~~~  231 (396)
T TIGR00882       195 ---------ALGAN-------------A-SAFSLKLAL-------------------ELFRQ-RKFWMFVLYVVGVACVY  231 (396)
T ss_pred             ---------ccccc-------------c-CCCCHHHHH-------------------HHHcC-CcHHHHHHHHHHHHHHH
Confidence                     00000             0 000000000                   00011 11111111111111111


Q ss_pred             HHHhhhhhHHHHHHh---hhccCCCCe------------eeCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          390 VILTEFLTLSVQQAY---TMNTHMGKL------------KLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  454 (605)
Q Consensus       390 ~~~~~~~~~~~~~~~---~~~~~~~~~------------~ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~  454 (605)
                      ..+.+....+.....   +.+....++            .+..++..+|.+.++.+.++.++.++.+......       
T Consensus       232 ~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------  304 (396)
T TIGR00882       232 DVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------  304 (396)
T ss_pred             HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------
Confidence            111111112211111   001000010            0111334444555555666666666655443332       


Q ss_pred             hhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHH-HHHHhhHHHHHHHHHHHHhh
Q 007405          455 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIK  533 (605)
Q Consensus       455 ~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~l~~~l~~~i~  533 (605)
                                      .+.+++++..++.+++..........+..+..|++.++++.+. ++....+|+.+++.+.+.+.
T Consensus       305 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       305 ----------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             ----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence                            3455666667777887777666677777788888888887766 67899999999999999887


Q ss_pred             cccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHH
Q 007405          534 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  576 (605)
Q Consensus       534 ~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~  576 (605)
                      +..|                  +...|++.+++.++..++..+
T Consensus       369 ~~~G------------------~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       369 DSIG------------------FQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             Hhcc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            7443                  456788877777776665443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.83  E-value=6.2e-19  Score=185.59  Aligned_cols=154  Identities=13%  Similarity=0.049  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007405           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (605)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  170 (605)
                      ...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++              
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--------------   80 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS--------------   80 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh--------------
Confidence            345578899999999999999999999999999999999997 99999999999999998888876              


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH-HHH
Q 007405          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLV  249 (605)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p-~i~  249 (605)
                                    .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+.+.++|..++| .++
T Consensus        81 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  140 (379)
T TIGR00881        81 --------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVL  140 (379)
T ss_pred             --------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHH
Confidence                          467889999999999999999999999999999988      99999999999999999999 567


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       250 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      +.+.+..+|++.|++.+++.++..+..+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       141 FGIAELYSWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence            777777899999988777665554444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.83  E-value=6.5e-18  Score=180.31  Aligned_cols=179  Identities=9%  Similarity=-0.045  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      |.++...+. +...+....+.+.+..++.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            445444443 33333334455555666655 8999999999999999999999999999999997 99999999999998


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      +.++.++++...    ..                   .++..+++.|++.|++ ++..+.....++++||+++      |
T Consensus       112 i~~~~~~~a~~~----~~-------------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------r  161 (462)
T PRK15034        112 IPCVWLGIAVQN----PN-------------------TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------Q  161 (462)
T ss_pred             HHHHHHHHHHcc----cC-------------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------h
Confidence            888877764110    00                   3678899999999998 6677888999999999999      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----HHh-------------hhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVY-----IQM-------------EHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~-----l~~-------------~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      +++++++....++|..++++++..     +..             ..+|+.++++..+..++..++.++.
T Consensus       162 G~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        162 GSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999865566666555444432     222             3347777777666665555554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.83  E-value=2.9e-18  Score=206.95  Aligned_cols=136  Identities=16%  Similarity=0.084  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH--HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 007405          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (605)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  182 (605)
                      ...++..+++.+...++.+++|+++||+ |||+++.+...+  ..+......+..                         
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------------------------  105 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------------------------  105 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            3467778889999999999999999997 999986442222  211211111110                         


Q ss_pred             cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 007405          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (605)
Q Consensus       183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f  262 (605)
                        .+++.++++|+++|++.+...|...+++.|++++++      |+.++++...+.++|.++||.++|++.+..+|++.|
T Consensus       106 --~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814        106 --NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             --hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence              367889999999999999999999999999999998      999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 007405          263 GALAIAMGISNM  274 (605)
Q Consensus       263 ~~~~~~~~i~~~  274 (605)
                      ++.+++.+++++
T Consensus       178 ~~~~~~~~~~~~  189 (1140)
T PRK06814        178 ALLMGIAVLGWL  189 (1140)
T ss_pred             HHHHHHHHHHHH
Confidence            544444444333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.82  E-value=1.1e-17  Score=177.70  Aligned_cols=327  Identities=10%  Similarity=0.014  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchH----HHHHHHHHHHHHHHHHH
Q 007405           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~----~~~~~~~~~~~~~~~~~  153 (605)
                      .++...+...+.++++.|+ +++|.|..+.+++.+++.+...++.+++|+++||+ ||+    +.+.+..++.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence            3444455556677888898 45899999999999999999999999999999997 984    3332222211  11111


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      ..+                            .+.+.+++.|++.|++.+...+...++..|.  .++      |++.++.
T Consensus        89 ~~~----------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~  132 (382)
T PRK11128         89 FGA----------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGK  132 (382)
T ss_pred             Hhc----------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcch
Confidence            111                            4677888899999999998888888887775  233      6666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCc
Q 007405          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSS  313 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~  313 (605)
                      .....++|..+||.+++++.+++||+..|++.++..++..+.. ...++.   ++++++                    +
T Consensus       133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~--------------------~  188 (382)
T PRK11128        133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPTI---MPQGES--------------------R  188 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCCC---CCcccc--------------------c
Confidence            7777789999999999999999999999987776544433322 222211   110000                    0


Q ss_pred             cccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhh-hhHHHHHHHHHH
Q 007405          314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACTIMLNVIL  392 (605)
Q Consensus       314 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~  392 (605)
                                 ++  .       .+..                  ..+     .+....|.++.... .++....+...+
T Consensus       189 -----------~~--~-------~~~~------------------~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~  225 (382)
T PRK11128        189 -----------QQ--E-------SAGW------------------PAW-----KALLKEPTVWRFLLCVSLLQGSHAAYY  225 (382)
T ss_pred             -----------cc--c-------cccc------------------chH-----HHHHcChhHHHHHHHHHHHHHHhHhHH
Confidence                       00  0       0000                  000     00000111111111 111111111111


Q ss_pred             hhhhhHHHHHHhhhccCCCCe--------e----eCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 007405          393 TEFLTLSVQQAYTMNTHMGKL--------K----LPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY  460 (605)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~--------~----ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (605)
                      ... ..+..+ .+.+....+.        .    ...++..+|.+.++.+..++++.+++++.++..             
T Consensus       226 ~~~-~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------  290 (382)
T PRK11128        226 GFS-AIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------  290 (382)
T ss_pred             HHH-HHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence            111 112211 1222111010        0    111455666777777777777777776655443             


Q ss_pred             cccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhhcccC
Q 007405          461 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTG  537 (605)
Q Consensus       461 ~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~l~~~l~~~i~~~~~  537 (605)
                                .+.+++++..++.|+++++..+....++.+.. ++.+++++++.+ ....+|..+|+.+.|.+.+..+
T Consensus       291 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g  357 (382)
T PRK11128        291 ----------TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG  357 (382)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                      34556667788889999999999999988874 555688999887 5667888999999998877444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.82  E-value=7.3e-17  Score=173.33  Aligned_cols=370  Identities=13%  Similarity=0.036  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccch-HHHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGL  150 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR-~~~~~~~~~~~~~~~  150 (605)
                      ..+.+..++...++....++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ || |+++.++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence            3455566666666656679999999999999999999999999999999999999999997 65 778888887776666


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhcc--------CCCCCch
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ--------FDERSKD  222 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~--------~~~~~~~  222 (605)
                      ....+.                            .+++.+++.|++.|++.+...+...++..+.        .....  
T Consensus        84 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--  133 (418)
T TIGR00889        84 FFAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--  133 (418)
T ss_pred             HHHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence            666554                            3566777888888888776666655543222        22112  


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHH
Q 007405          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA  302 (605)
Q Consensus       223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  302 (605)
                          |.+.++      .+|..+||.+++.+.....|. +|++.++..++..+. .+..++.++.+++++.  +..     
T Consensus       134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~--~~~-----  194 (418)
T TIGR00889       134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKM--SIK-----  194 (418)
T ss_pred             ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCcccccc--CHH-----
Confidence                444444      378888888888874333344 455555554444433 2222322111000000  000     


Q ss_pred             HHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhh-h
Q 007405          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-I  381 (605)
Q Consensus       303 ~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~  381 (605)
                                                        +...   .+.                    .+....+++...+. .
T Consensus       195 ----------------------------------~~~~---~~~--------------------~~~~k~~~~~~~~~~~  217 (418)
T TIGR00889       195 ----------------------------------VMLG---LDA--------------------FILFKNKRMAIFFFFS  217 (418)
T ss_pred             ----------------------------------HHhh---hhH--------------------HHHhcCCCeeeHHHHH
Confidence                                              0000   000                    00000011111111 1


Q ss_pred             hHHHHHHHHHHhhhhhHHHHHHhhhcc--------CCCCe------------eeCCCCCCCCCChhHHHHHHHHHHHHHH
Q 007405          382 PACTIMLNVILTEFLTLSVQQAYTMNT--------HMGKL------------KLPVTCHPRGASQLQRVGIGLAVSILSV  441 (605)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~------------~ip~~~~~~~~~~~~~i~~G~~~~~~~~  441 (605)
                      ++........+ .....+... .+.+.        ...+.            .++.++..+|++.++.+.++.++.++++
T Consensus       218 ~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~  295 (418)
T TIGR00889       218 MLLGAPLQITN-IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRF  295 (418)
T ss_pred             HHHHhHHHHHH-HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            11111111111 111111111 11111        00000            1111444556666666777777766665


Q ss_pred             HHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHH-HHhhH
Q 007405          442 IWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGL  520 (605)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~l  520 (605)
                      ..+.....                  .. .+.+.++...++.+++++...+....++.+.+|++.||+++|+.+ ....+
T Consensus       296 ~l~~~~~~------------------~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~l  356 (418)
T TIGR00889       296 GFFAYGDP------------------EY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGF  356 (418)
T ss_pred             HHHHHcCc------------------ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence            55543210                  00 123345556778899999999999999999999999999999997 67889


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007405          521 GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  581 (605)
Q Consensus       521 g~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~  581 (605)
                      |..+|+.+.+.+.+..+  .++..+          ++..|++.+++.++..+.++++.++.
T Consensus       357 g~~iGp~l~G~l~~~~g--~~~~~~----------~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       357 GSLLGYILSGVMVEKMF--AYGTFD----------WQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHhc--cccCCc----------hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999998877544  111112          36678888888888888888777644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.81  E-value=6.2e-18  Score=177.95  Aligned_cols=163  Identities=17%  Similarity=0.092  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+..+...++.....+...+.++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            45556666666666666777777789999999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      +++.++                            . +.+.++++|+++|++.+. .+...++++|.+|+++      |++
T Consensus        82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~  126 (366)
T TIGR00886        82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT  126 (366)
T ss_pred             HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence            888776                            4 678888999999999665 4567789999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----------hhchHHHHHH-HHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA-LAIAM  269 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~~-~~~~~  269 (605)
                      ..+++....++|..+++.+++.+..          ..+|++.|++ .++..
T Consensus       127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            9999887778888888777766554          2379999844 34443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.81  E-value=9.8e-17  Score=175.78  Aligned_cols=174  Identities=14%  Similarity=0.115  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc----cchHHH-HHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIFT  143 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~GR~~~-~~~~~  143 (605)
                      |..+.++...+...+..+.....++.|+. +.|.+.++.+.. +..... +++.++.|+++||+    +||||. ++++.
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~   88 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQ   88 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence            34566777777777777777777788865 559998888875 222222 36889999999994    288886 55677


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      ++..++...+++..      +.                   .+.+.+.+.+++.+++.+...+...++..|++|+++   
T Consensus        89 i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---  140 (491)
T PRK11010         89 LLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---  140 (491)
T ss_pred             HHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---
Confidence            66666666665531      11                   367778888899999999999999999999999988   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHH
Q 007405          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                         |+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..
T Consensus       141 ---rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        141 ---RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence               9999999999999999999999999988 5699999999887766554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.79  E-value=5.2e-16  Score=166.20  Aligned_cols=171  Identities=11%  Similarity=0.024  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++.+....++..+.+ ++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.||+ |||+++.++.+++.++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            444444444444443 5555566777999999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +++..+...                         .+++.++++|++.|+|.|...+..++++.+..|+++      |++.
T Consensus        83 ~l~~~~~~~-------------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~  131 (410)
T TIGR00885        83 FLFWPAAEI-------------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR  131 (410)
T ss_pred             HHHHHHHhh-------------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence            776543210                         367888999999999999999999999999999888      8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--------------------------hhchHHHHHHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~--------------------------~~gw~~~f~~~~~~~~i~~~  274 (605)
                      .++.+...++|..++|.+++.+..                          ..+||++|++.+++.++..+
T Consensus       132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887742                          24699999887776554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.78  E-value=6.3e-17  Score=169.91  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 007405           89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (605)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (605)
                      ...+.+.+.+++|++.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ .+            
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------   84 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------   84 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh------------
Confidence            34455567889999999999999999999999999999999997 99999999988887777665 32            


Q ss_pred             ccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007405          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (605)
Q Consensus       169 c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i  248 (605)
                                      .+...+++.|++.|++.+...+..+....|.++ ++      |++.+++++...++|..+++.+
T Consensus        85 ----------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~  141 (355)
T TIGR00896        85 ----------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAA  141 (355)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHH
Confidence                            356778899999999999888888888888886 46      8999999999999999999999


Q ss_pred             HHHHHhhh--chHHHHHHHHHHHHH
Q 007405          249 VVYIQMEH--GWGSAFGALAIAMGI  271 (605)
Q Consensus       249 ~~~l~~~~--gw~~~f~~~~~~~~i  271 (605)
                      ++.+.+..  +|++.|.+.++..++
T Consensus       142 ~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       142 TVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            99887765  399888776654433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.78  E-value=5.7e-17  Score=171.57  Aligned_cols=156  Identities=19%  Similarity=0.211  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhC--CChhHHHHHHHH--HHH---HHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007405           91 NMVTFMFYVMH--KSFADSSNAVNN--FLG---ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (605)
Q Consensus        91 ~l~~yl~~~~~--~s~~~~~~~~~~--~~~---~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (605)
                      +...++.+++.  .++++.+...+.  +..   ...++.++.|+++||+ |||++++++.++..++.++++++...... 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            35556666544  334444443332  322   2346789999999997 99999999999999998888875221000 


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHH
Q 007405          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (605)
Q Consensus       164 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  243 (605)
                                         .......++++|+++|++.+...+...++++|.+++++      |+...++.+.+..+|..
T Consensus        92 -------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~  146 (394)
T TIGR00883        92 -------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLL  146 (394)
T ss_pred             -------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHH
Confidence                               00112357889999999999999999999999999998      99999999999999999


Q ss_pred             HHHHHHHHHH--------hhhchHHHHHHHHHHHHHHH
Q 007405          244 VAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN  273 (605)
Q Consensus       244 i~p~i~~~l~--------~~~gw~~~f~~~~~~~~i~~  273 (605)
                      +++.++..+.        +..+|++.|++.++..++..
T Consensus       147 i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            9998876654        35689999988766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=1.9e-17  Score=183.19  Aligned_cols=374  Identities=14%  Similarity=0.082  Sum_probs=228.2

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 007405           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (605)
Q Consensus        98 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  177 (605)
                      +..+.+.....+..+++.++..+++++.|++|||+ |||+++++++++.+++.++.+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            45667788888999999999999999999999995 99999999999999999888887                     


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (605)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g  257 (605)
                             .++..+++.|++.|++.++...+...+++|.+++++      |+.+.++ ......++.++|.+++++..  +
T Consensus       169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~  232 (521)
T KOG0255|consen  169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D  232 (521)
T ss_pred             -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence                   689999999999999999999999999999999999      9999999 88888888889999999887  7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccccccccccCCCcccccCCccccc
Q 007405          258 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH  337 (605)
Q Consensus       258 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~  337 (605)
                      ||+.+++..+..++.++..++                                .+|+|+| +..+++.+++.+..+++.+
T Consensus       233 Wr~~~~~~~~~~~~~~~~~~l--------------------------------~~Es~rw-l~~~g~~~~a~~~l~~~a~  279 (521)
T KOG0255|consen  233 WRWLFWIISIPSGLFLLLWFL--------------------------------PPESPRW-LLSKGRIDEAIKILKKIAK  279 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc--------------------------------cCcChHH-HHHcCchHHHHHHHHHHHh
Confidence            999999888776665554221                                2355555 5555544444444333321


Q ss_pred             CC-----CcchhhHhhhhhccccCCCCC----Cccccchhhhhhhhhhhhhhhh-HHHHHHHHHHhhhhh----HHHHHH
Q 007405          338 TD-----DFRCLDKAALELKEDVINPSP----WKLCTVTQVEEVKTLVRLVPIP-ACTIMLNVILTEFLT----LSVQQA  403 (605)
Q Consensus       338 ~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~  403 (605)
                      .+     .....+..............|    +.++...  +-++.++.....+ .....++........    .+..+.
T Consensus       280 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~  357 (521)
T KOG0255|consen  280 LNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTP--RLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFT  357 (521)
T ss_pred             hcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCH--HHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHH
Confidence            10     001111110000000000000    0001000  0112222221111 111111111110000    000000


Q ss_pred             hhhccCCCCeeeCC----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHH
Q 007405          404 YTMNTHMGKLKLPV----TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ  479 (605)
Q Consensus       404 ~~~~~~~~~~~ip~----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~  479 (605)
                      ..     +.+.+|.    .....+.+++.....++++..++.++.++....                    ...+.....
T Consensus       358 ~~-----~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~  412 (521)
T KOG0255|consen  358 LS-----GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--------------------LGGWLHWIL  412 (521)
T ss_pred             HH-----HHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--------------------chhHHHHHH
Confidence            00     0112222    111122334455667777777887777765211                    111122223


Q ss_pred             HHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHH
Q 007405          480 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYL  559 (605)
Q Consensus       480 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~  559 (605)
                      ..+...+....+.....+..+..|+..|+.+.+..+....+|+.+++.+.........       .            ..
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~-------~------------~~  473 (521)
T KOG0255|consen  413 PLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP-------L------------LG  473 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c------------ch
Confidence            3333344445555558888899999999999999999999999999998754322110       0            11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhceecccCC
Q 007405          560 YWLLAVLSVINFCAFLYSAYRYKYRSEQK  588 (605)
Q Consensus       560 f~~~a~l~~v~~~~~~~~~~~~~~~~~~~  588 (605)
                      +..++.+..+..++...+.++++.+...+
T Consensus       474 ~~~~~~~~~l~~~~~~~~lpet~~~~l~~  502 (521)
T KOG0255|consen  474 LILFGWLALLLGLLSLLLLPETKGKPLPG  502 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence            22245666666666667778887765533

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.78  E-value=4.4e-17  Score=175.96  Aligned_cols=173  Identities=16%  Similarity=0.142  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchHH-HHHHHHHHHHHHHHHHH
Q 007405           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT  154 (605)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~~-~~~~~~~~~~~~~~~~~  154 (605)
                      +...+....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||.   +|||| .++++.++..++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            344455556677899999999999999999999999999999999999999984   48754 56677777777777766


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC-CCCchhhhhhhHHHHH
Q 007405          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDRFFNF  233 (605)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~-~~~~~~~~~r~~~~~~  233 (605)
                      ....   ...                   ......+++.+++.+++.+.......++.+|..+ +++      |++..++
T Consensus        89 ~~~~---~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~  140 (437)
T TIGR00792        89 TTPD---FSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF  140 (437)
T ss_pred             hCCC---CCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence            5311   000                   0235566677778888888887788889999875 455      8999898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          234 FYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                      .....++|..+++.+.+.+..       ..+|++.+.+.+++.++..++.+..
T Consensus       141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            888888888777766655542       4579999888877766555544333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.77  E-value=6.4e-23  Score=222.57  Aligned_cols=387  Identities=16%  Similarity=0.143  Sum_probs=235.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 007405          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (605)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  185 (605)
                      ..++..+...++..++.+++|+++||+ |||++++++.++..++.++..++...                         .
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N  100 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence            457888999999999999999999997 99999999999999999998886210                         1


Q ss_pred             hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHH
Q 007405          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  262 (605)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~---~~gw~~~f  262 (605)
                      +...+.++|++.|++.|+..+..+.++.|..|++.      |+...++......+|..++..++-.+.+   ..+||+.+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            67889999999999999999999999999999999      9999999888888988888776544433   24599888


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcc
Q 007405          263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR  342 (605)
Q Consensus       263 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  342 (605)
                      ++..+..++.++...                                .+||||+| ++.+++.+++.+..+++++.+..+
T Consensus       175 ~~~~~~~l~~~~~~~--------------------------------~~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~  221 (451)
T PF00083_consen  175 IFGAIPSLLVLLLRF--------------------------------FLPESPRW-LLSKGRDEEAEKVLRKLRGKEIED  221 (451)
T ss_pred             ccccccccccccccc--------------------------------ccccccce-eccccccccccccccccccccccc
Confidence            877766544333221                                27999999 999999999998888865432211


Q ss_pred             h-hhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHH-HHHhhhhhHHHHHHhhhccC-C-----CCee
Q 007405          343 C-LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTH-M-----GKLK  414 (605)
Q Consensus       343 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-----~~~~  414 (605)
                      . .+...............|+.....+ ..+++++..+.+.....+.+ .......+.+.. ..+.+.. .     ....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~  299 (451)
T PF00083_consen  222 EEIEEIKAEKKESQESKASWRDLFRNK-KYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNSFLATLILGLVN  299 (451)
T ss_pred             ccccccccccccccccceeeeeccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            1 0110000000000001121111111 01222222222222221111 011111111111 1111111 1     0111


Q ss_pred             eCC----CCCCCCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHh
Q 007405          415 LPV----TCHPRGASQLQRVGIGLAVSILSVIWAGI-FERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF  489 (605)
Q Consensus       415 ip~----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~  489 (605)
                      ++.    ....++.+++..+..|..+++++++.++. ....          .++   ... .+...++...++.......
T Consensus       300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~----------~~~---~~~-~~~~~i~~~~l~~~~~~~g  365 (451)
T PF00083_consen  300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLG----------VSS---SSW-WSILSIVFLALFFAFFSLG  365 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc----------ccc---ccc-cccccceeeeecccccccc
Confidence            111    12233344444455566666666555541 1000          000   000 1222222122122222223


Q ss_pred             hhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHH
Q 007405          490 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVI  569 (605)
Q Consensus       490 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v  569 (605)
                      ..+....+..|.+|.+.|+.+.|+....+.+++++++.+.+.+.+..+       ++           ..|++.++++++
T Consensus       366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-------~~-----------~~~~i~~~~~~i  427 (451)
T PF00083_consen  366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-------GW-----------GVFLIFAGVCLI  427 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-------cc-----------ccchhhHHHHHH
Confidence            456666788999999999999999999999999999888776544211       11           456777788888


Q ss_pred             HHHHHHHHHhhceecccCCCCC
Q 007405          570 NFCAFLYSAYRYKYRSEQKHGN  591 (605)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~  591 (605)
                      ..++.+++.+++|+++.||.++
T Consensus       428 ~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  428 AIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             HHhheeEEEeeCCCCCHHHHHh
Confidence            8888888999999998877554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.77  E-value=4.6e-16  Score=159.09  Aligned_cols=382  Identities=13%  Similarity=0.070  Sum_probs=248.6

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~  143 (605)
                      ++.++|.++..... +...+..+.+.+.+.+++++++|+|+.|.++++.+..+...+..++-|.+.||+ |-|++..+++
T Consensus         9 k~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHH
Confidence            34455555544443 334444566777888999999999999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      ++.++-.+..+++...                         .+.+.+++..++.|++.+ ..+...+.++.+||+++   
T Consensus        87 ~l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---  137 (417)
T COG2223          87 LLLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---  137 (417)
T ss_pred             HHHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh---
Confidence            9988888888877331                         344788888899999955 45777899999999999   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHH
Q 007405          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL  300 (605)
Q Consensus       224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  300 (605)
                         ++.+.+++. ..|+|..+...++..+....|   |+....+..+..++..+.+++..+.....++..++...     
T Consensus       138 ---qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-----  208 (417)
T COG2223         138 ---QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-----  208 (417)
T ss_pred             ---hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----
Confidence               999999999 899999999999998888888   99998888888888777766655543222221111000     


Q ss_pred             HHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhh
Q 007405          301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP  380 (605)
Q Consensus       301 ~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  380 (605)
                                                                  +.                   .+.+...+..+.+..
T Consensus       209 --------------------------------------------~~-------------------~~~v~~~~~~W~lsl  225 (417)
T COG2223         209 --------------------------------------------AQ-------------------LKAVFSNKDTWLLSL  225 (417)
T ss_pred             --------------------------------------------hH-------------------HHHHhcCcchHHHHH
Confidence                                                        00                   000010111112211


Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHHhhhccCCCC-----eeeCC-------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007405          381 IPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-----LKLPV-------TCHPRGASQLQRVGIGLAVSILSVIWAGIFE  448 (605)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ip~-------~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~  448 (605)
                      +......-++.+......+.......+....+     +.++.       +...||.+..+...+.+..++++...+.+..
T Consensus       226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            21222222222222222222222222222211     11111       5567888877777777777777777666542


Q ss_pred             HHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHH
Q 007405          449 RYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL  528 (605)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l  528 (605)
                      ..       .        ... .+.+..+..++.+++..+.-.-..+-.+..+.|+ +-|.+.|+....+.+|++.-|..
T Consensus       306 ~~-------~--------~~~-~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~  368 (417)
T COG2223         306 TG-------F--------GHG-GSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLA  368 (417)
T ss_pred             cc-------c--------ccC-cchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHH
Confidence            10       0        001 2233333333333333333333444455555554 56889999999999999999999


Q ss_pred             HHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhce
Q 007405          529 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  582 (605)
Q Consensus       529 ~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~  582 (605)
                      .+...+.+|                 .+...|+++..+.+++.+..+....|.+
T Consensus       369 ~g~~~~~tg-----------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         369 FGVSLDLTG-----------------SYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             HHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998887665                 2356788888888888888887765543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.76  E-value=7.2e-16  Score=168.07  Aligned_cols=152  Identities=15%  Similarity=0.137  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      .....|+..++|-+ ....|+.+.+.++..+..++.|.|||.+ |||+.++++.++.++|.+.++.+             
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA-------------  128 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA-------------  128 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence            45667899999875 5567888899999999999999999986 99999999999999999999876             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~  249 (605)
                                     ++...++++..+.|+|.|... .....++|..|.+.      |..+..+......+....+|.++
T Consensus       129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia  186 (599)
T PF06609_consen  129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA  186 (599)
T ss_pred             ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence                           678899999999999976654 55667899999988      88887776666666666788888


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          250 VYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       250 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ..+..+.+|||.|++.++...+++++.++
T Consensus       187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            77776778999999998877666654433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.76  E-value=2.9e-15  Score=160.23  Aligned_cols=166  Identities=14%  Similarity=0.110  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc----cchHH-HHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAG  149 (605)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~GR~~-~~~~~~~~~~~~  149 (605)
                      +...+.+.+.+.-....+|.|+.+ .|+|.++.+++..+...  .+..++.|+++||+    +|||| .+.++.++..++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            334455555555556678888875 59999999988665554  68889999999996    27765 677778877777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      +..+.+...      .                   .+.+.+++..++.+++.+...+...++..|.+|+++      |++
T Consensus        82 ~~~l~~~~~------~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~  130 (402)
T PRK11902         82 IAAMAFCPP------H-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGA  130 (402)
T ss_pred             HHHHHhcCc------c-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhH
Confidence            776665310      0                   345666666667788888888999999999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~~~~~~~~i~~~  274 (605)
                      +.++...+..+|..+++.+++++.+. .|||..|++.++..++..+
T Consensus       131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        131 GAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998885 4999999988776655444

>TIGR00901 2A0125 AmpG-related permease

Probab=99.75  E-value=6.2e-16  Score=162.39  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc----cchHHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 007405           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF  162 (605)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~GR~~~~-~~~~~~~~~~~~~~~~~~~~~~~  162 (605)
                      +.....+.+.+++|+|.++.++.... .+...+ .++.|+++||+    +||||.+ +.+.++..+.+..+++...    
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence            44445556667889999999988654 333344 88999999996    4899975 5666666666555554310    


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHH
Q 007405          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (605)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~  242 (605)
                        .                   .+.+.+....++.+++.+...+...++++|.+|+++      |+.+.++...+.++|.
T Consensus        80 --~-------------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        80 --S-------------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM  132 (356)
T ss_pred             --c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence              0                   345556666667788888888999999999999988      9999999999999999


Q ss_pred             HHHHHHHHHHHhhhc--------hHHHHHHHHHHHHHHHHHHHH
Q 007405          243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       243 ~i~p~i~~~l~~~~g--------w~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .+++.+++++....|        ||..|++.++..++..+..++
T Consensus       133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888        999999888876665544443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.75  E-value=4.9e-15  Score=159.31  Aligned_cols=418  Identities=11%  Similarity=0.015  Sum_probs=238.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhh----ccchHHHHHHH-HHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TTI  145 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~GR~~~~~~~-~~~  145 (605)
                      ++.+..+.+...+++....++++.|+ +.+|.+....+++..+..+...+..|+.|++|||    + ||||.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            55566666666677555566666665 6899999999999999999999999999999995    6 999998875 555


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      .+++.++++++.....+...          . .-...+......++++..+..++....++...++++|.+|+++++   
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~---  149 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR---  149 (477)
T ss_pred             HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence            55666666654321100000          0 000000011234445555566788888888899999999988621   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh-------------chHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG  290 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l--~~~~-------------gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~  290 (605)
                       ++.+.++.....++|..+|+.+++++  .+..             +.++.|++.+++.+++.++..+..+|.+..+++.
T Consensus       150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~  228 (477)
T TIGR01301       150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD  228 (477)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc
Confidence             35788889999999999999998865  2211             5678899888887777776666555543211110


Q ss_pred             CchhHHHHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhh
Q 007405          291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE  370 (605)
Q Consensus       291 ~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (605)
                      .+..                        -++..            ++.+....+.   .          .++.+..-   
T Consensus       229 ~~~~------------------------~~~~~------------~~~~~~~~~~---~----------i~~~~~~m---  256 (477)
T TIGR01301       229 FINS------------------------EAAPP------------SKHGEEAFFG---E----------LFGAFKYL---  256 (477)
T ss_pred             chhh------------------------hcccc------------cccchhhhHH---H----------HHHHHHHC---
Confidence            0000                        00000            0000000000   0          00000000   


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhhh-cc----------CCC--------------CeeeCCCCCCCCCC
Q 007405          371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTM-NT----------HMG--------------KLKLPVTCHPRGAS  425 (605)
Q Consensus       371 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~--------------~~~ip~~~~~~~~~  425 (605)
                       -|.+.+++...++.-+-|..+....|.++-+...- +.          +.+              ++.+|.  ..++.+
T Consensus       257 -P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~--l~~~~g  333 (477)
T TIGR01301       257 -PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEK--LCRGWG  333 (477)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence             01111222222222222333333334333321110 00          000              112222  112222


Q ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcCccccccCCCCcch-HHHHHHHHHHHHHHhHhhhhhhHHHHHh
Q 007405          426 Q-LQRVGIGLAVSILSVIWAGIFERYRR---NYAISHGYEFSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYE  500 (605)
Q Consensus       426 ~-~~~i~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s-~~~lv~~~~l~g~g~~~~~~~~~~~~~~  500 (605)
                      . +..-.++.++.+++++...++.....   .......+..     .+ .. .+..+..+.++|+.....+...++++.+
T Consensus       334 ~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~  407 (477)
T TIGR01301       334 AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLP-----PP-TGIKASALIVFAILGIPLAITYSIPFALASI  407 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccC-----cc-hhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence            2 22236777777788777765532100   0000001000     01 11 3556677788899999999999999999


Q ss_pred             hcch--hHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007405          501 EAPD--AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  578 (605)
Q Consensus       501 ~~P~--~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  578 (605)
                      ..|+  +..|..+|+.|.+..+...+.+...+.+.+..|  +              +-...+.+.++..+++.+..++..
T Consensus       408 ~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--~--------------~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       408 RSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--G--------------GNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--C--------------CCeeHHHHHHHHHHHHHHHHHHhC
Confidence            9995  455999999999999999999988887666554  1              112467777778888888777776


Q ss_pred             hhce
Q 007405          579 YRYK  582 (605)
Q Consensus       579 ~~~~  582 (605)
                      ++.+
T Consensus       472 ~~~~  475 (477)
T TIGR01301       472 PRPR  475 (477)
T ss_pred             CCCC
Confidence            6543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.71  E-value=4.6e-15  Score=148.85  Aligned_cols=116  Identities=16%  Similarity=0.090  Sum_probs=105.0

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 007405          103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (605)
Q Consensus       103 s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  182 (605)
                      +..-+|.+-+.|.+...+.++..|.+|||| |||+++++|.+..++...+.+.+                          
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S--------------------------  118 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS--------------------------  118 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence            445678888999999999999999999998 99999999999999988888876                          


Q ss_pred             cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                        .++..++++|++.|+..|-. ..+.++++|.+++++      |+.+++....+..+|..+||++++++..
T Consensus       119 --~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 --RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             --HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence              57877888899999998765 677899999999998      9999999999999999999999999987

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=8.4e-16  Score=154.98  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=137.6

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007405           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (605)
Q Consensus        99 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  178 (605)
                      .++-++++.+++...+.+...+..|+.|.+.||+ |+|-.+++|+++....++++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            4666788899999999999999999999999997 99999999999999999999986                      


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                            .+.++++++|.++|+|.++...+..++++|.||++..     |++.+++.-.+..+|-.+||..+|.+.+..|.
T Consensus       157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk  225 (464)
T KOG3764|consen  157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK  225 (464)
T ss_pred             ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence                  5778999999999999999999999999999998864     89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc
Q 007405          259 GSAFGALAIAMGISNMLFFIGTPLY  283 (605)
Q Consensus       259 ~~~f~~~~~~~~i~~~~~~~~~~~~  283 (605)
                      ..+|.+.++++++-..+-++..+.+
T Consensus       226 ~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  226 SAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             cCcHHHHHHHHHHHHHHHHheeCcc
Confidence            9999999998888777766655543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.70  E-value=5.1e-14  Score=148.03  Aligned_cols=154  Identities=12%  Similarity=0.031  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           88 LSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      ..+++.+|+.+++|++.++ .+.+.+.|..++.++.+++|+++||+ |-|+++.++.+...+..++.+++          
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------  112 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------  112 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH----------
Confidence            3456778999999999999 99999999999999999999999997 99999999999999999999886          


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .++..+.+.|++.|++.|+.. +...++..++|+++      |+++.+++..+..+|.++++
T Consensus       113 ------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~  167 (511)
T TIGR00806       113 ------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSS  167 (511)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              578899999999999999999 99999999999999      99999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHH---HHHHHHHHHHHHHH
Q 007405          247 TLVVYIQMEHGWGSAFGA---LAIAMGISNMLFFI  278 (605)
Q Consensus       247 ~i~~~l~~~~gw~~~f~~---~~~~~~i~~~~~~~  278 (605)
                      ++++++ ..+||++-+.+   ......+++++.++
T Consensus       168 ~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       168 VLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            999994 46789875544   34444555554444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=2.4e-14  Score=155.73  Aligned_cols=408  Identities=13%  Similarity=0.089  Sum_probs=243.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      |.+.+..|+.++..+++..   .+...+.+.++.+..+.+|+.++......+..|+.+.+.||+ |.|.+.+++.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            5566666666666666542   356677889999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      |+++..++                            .+.+.+++.. ++.|+|.|.........+...|+++       |
T Consensus       124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R  168 (509)
T KOG2504|consen  124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------R  168 (509)
T ss_pred             HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------H
Confidence            99999987                            5677777766 6789999999888888888777654       8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhh
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  307 (605)
                      +.+.++...+..+|..+=|.+..++.+.+|||+.+++.+.+.+-.++.....++...+.++.  ...+.-+        .
T Consensus       169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~  238 (509)
T KOG2504|consen  169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------S  238 (509)
T ss_pred             HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------c
Confidence            88888888888899999999999999999999999988877755555555554433222221  0000000        0


Q ss_pred             ccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCC-cccc---chhhhhhhhhhhhhhhhH
Q 007405          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW-KLCT---VTQVEEVKTLVRLVPIPA  383 (605)
Q Consensus       308 ~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~k~~~~~~~~~~  383 (605)
                      ...++.....  .+.      ....+...+.. ...................+- +...   .+...++..++..+-..+
T Consensus       239 ~~~~~~~~~~--~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~  309 (509)
T KOG2504|consen  239 AASVESTPKP--VEL------RISERDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLF  309 (509)
T ss_pred             cccccccccc--ccc------ccccCCCCCCc-ccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHH
Confidence            0000000000  000      00000000000 000000000000000000000 0000   011111111111111111


Q ss_pred             HHHHHHHHHhhhhhHHHHH--HhhhccCCCCee--------eC----CCCCCCC--CChhHHHHHHHHHHHHHHHHHHHH
Q 007405          384 CTIMLNVILTEFLTLSVQQ--AYTMNTHMGKLK--------LP----VTCHPRG--ASQLQRVGIGLAVSILSVIWAGIF  447 (605)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------ip----~~~~~~~--~~~~~~i~~G~~~~~~~~~~~~~~  447 (605)
                      ....+...    ...+...  ..+++.....+.        +.    .+...++  +.......+++++.+++.++....
T Consensus       310 ~~~g~~~p----~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  310 AYLGFNVP----FVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHHH----HHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111    1111111  112221111110        00    0112222  233344456666666666555543


Q ss_pred             HHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHH
Q 007405          448 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI  527 (605)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~  527 (605)
                                             .+.+.++...+++|+..+...........+..+.+.-+.+.|+..+++.++..+|+.
T Consensus       386 -----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpP  442 (509)
T KOG2504|consen  386 -----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPP  442 (509)
T ss_pred             -----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcc
Confidence                                   355667777788899888888888889999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007405          528 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  578 (605)
Q Consensus       528 l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  578 (605)
                      +.+.+.+.++                 +|+..|++.++..+++.+++++..
T Consensus       443 iag~~~d~tg-----------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  443 IAGLLYDITG-----------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cceeeeeccC-----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            9998877665                 245667777777777766655544

>PRK09848 glucuronide transporter; Provisional

Probab=99.68  E-value=1.8e-14  Score=156.30  Aligned_cols=155  Identities=10%  Similarity=0.029  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchHHHH-HHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIY  146 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~~~~-~~~~~~~  146 (605)
                      .+.-.+..+..++.+..+.++++.|+++.+|++..+++.+.....+..++..|+.|+++||.   +||||.+ +++.+..
T Consensus        10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~   89 (448)
T PRK09848         10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL   89 (448)
T ss_pred             HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence            34444556666777666778888999999999999999999999999999999999999995   4777755 5555545


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .+..+++....  ....+                   ......+++..++.+++.+...+...++..++..+.++     
T Consensus        90 ~~~~~~~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----  143 (448)
T PRK09848         90 MIFSVLVFWVP--TDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----  143 (448)
T ss_pred             HHHHHHHHhCc--CCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----
Confidence            44444332210  00000                   02233444455667888888888888887777765432     


Q ss_pred             hhHHHHHHHH-----HHHHHHHHHHHHHHH
Q 007405          227 LDRFFNFFYL-----SVTVGAIVAFTLVVY  251 (605)
Q Consensus       227 r~~~~~~~~~-----~~~ig~~i~p~i~~~  251 (605)
                      |.+..++-.+     ..+++..++|.+.+.
T Consensus       144 r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        144 RARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666555333     244556666666554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.68  E-value=3.2e-14  Score=144.71  Aligned_cols=137  Identities=17%  Similarity=0.107  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007405           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (605)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (605)
                      ......+.+.+++.++++..+++++...+..++.++.++.|++.+|+ |+|+.++.++.++++|..+..-++.       
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~-------  100 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS-------  100 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence            34556788899999999999999999999999999999999999997 9999999999999999988864432       


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 007405          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (605)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~  245 (605)
                                        ..++..++++.++.|.|.+......+++++...+++.      -..-+++......+|+.++
T Consensus       101 ------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~g  156 (422)
T COG0738         101 ------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILG  156 (422)
T ss_pred             ------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHH
Confidence                              1578889999999999999999999999999999987      5666777777888999999


Q ss_pred             HHHHHHHHh
Q 007405          246 FTLVVYIQM  254 (605)
Q Consensus       246 p~i~~~l~~  254 (605)
                      |.+++++..
T Consensus       157 p~~g~~lil  165 (422)
T COG0738         157 PLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHH
Confidence            999998876

>TIGR00788 fbt folate/biopterin transporter

Probab=99.67  E-value=1.6e-14  Score=157.21  Aligned_cols=172  Identities=9%  Similarity=-0.009  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccc-----hHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTI  145 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----R~~~~~~~~~~  145 (605)
                      ...+....+.+.+. +.+...++.++.+++|+++++.+...+...+...+-++ +|+++||+ +     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence            44555577777787 77777889999999999999998888888888887655 99999997 7     77777777655


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      .. ......++..     +                    .......+.+++.+++.+....+..++..|..+ ++++.  
T Consensus       105 ~~-~~~~~~l~~~-----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~--  155 (468)
T TIGR00788       105 GS-AILYGLLPGK-----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA--  155 (468)
T ss_pred             HH-HHHHHhcccc-----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc--
Confidence            42 1112222100     0                    123334446788999999999999999999998 44221  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (605)
                       ++...++.+.+.++|..+|+.++|++.+..+|+..|++.+++.++..+.
T Consensus       156 -~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~  204 (468)
T TIGR00788       156 -GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV  204 (468)
T ss_pred             -CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence             4445666777788999999999999999999999999888777666443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.6e-13  Score=137.57  Aligned_cols=330  Identities=15%  Similarity=0.133  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      +..+.++.+=-|..+.++ ..+..-+.+++|+|.+.++.+.++-.+...+..++..+|+.|+ |..+.+..++++.++|.
T Consensus        14 i~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~   91 (395)
T COG2807          14 LAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGI   91 (395)
T ss_pred             HHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            333444444445554333 4567788999999999999999999999999999999999997 99999999999999888


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      ++=..                             .+...++.+-.+.|.|.+......++++-+-||++.       +..
T Consensus        92 ~iR~~-----------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~m  135 (395)
T COG2807          92 LIRSL-----------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLM  135 (395)
T ss_pred             HHHhc-----------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhH
Confidence            77665                             245678888899999999999999999999999875       888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcc
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  309 (605)
                      +++|..+.++|+.+++.+...+.++. ||+....+.+...++++++++-...+++....+.+.                 
T Consensus       136 tglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~-----------------  198 (395)
T COG2807         136 TGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL-----------------  198 (395)
T ss_pred             HhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc-----------------
Confidence            89999999999999999999888877 799999998888887777655432111100000000                 


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHH
Q 007405          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (605)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  389 (605)
                       .+.                                            .+-|+        +.......+.+-+....+|
T Consensus       199 -~~~--------------------------------------------~~vw~--------~~~aW~vtLfmGlqS~~~Y  225 (395)
T COG2807         199 -VSV--------------------------------------------RKVWR--------SPLAWQVTLFMGLQSLLYY  225 (395)
T ss_pred             -ccc--------------------------------------------ccccc--------CchhHHHHHHHHhhHHHHH
Confidence             000                                            01111        0111111222334455677


Q ss_pred             HHHhhhhhHHHHHHhhhccCCC--------------CeeeCC--CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          390 VILTEFLTLSVQQAYTMNTHMG--------------KLKLPV--TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN  453 (605)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~ip~--~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~  453 (605)
                      +.+.+++..+.++..  +....              ++.+|.  +|.+++.   ........++.++++.+.+..     
T Consensus       226 ~~~~WLP~ili~~G~--sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r---~~~~~~~~~~l~G~~G~~~~P-----  295 (395)
T COG2807         226 IVIGWLPAILIDRGL--SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR---PLVVLALLLMLVGLVGLLLAP-----  295 (395)
T ss_pred             HHHHHHHHHHHHcCC--CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHhh-----
Confidence            777777776655432  22221              123333  3333222   223334444445554444331     


Q ss_pred             HhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcch-hHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 007405          454 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAALAGGLGCFAASILNSII  532 (605)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~~~~lg~~l~~~l~~~i  532 (605)
                                    .. ..++|    .+++|+|.+.++|....++...+.+ +.-+.-+|+.+..+.+=..+||.+.|.+
T Consensus       296 --------------~~-~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         296 --------------GQ-LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             --------------hh-HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence                          01 22333    4788999999999999999876544 4455667777777777788899999999


Q ss_pred             hcccC
Q 007405          533 KSVTG  537 (605)
Q Consensus       533 ~~~~~  537 (605)
                      +|.+|
T Consensus       357 hDa~g  361 (395)
T COG2807         357 HDATG  361 (395)
T ss_pred             HHhcC
Confidence            99887

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.66  E-value=2.1e-13  Score=145.22  Aligned_cols=176  Identities=11%  Similarity=-0.017  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHhhhHH-HHHhhhccchHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      ...++...+.+.+.+..+.+.+|.|++ +.|.|.++.+..  ..+......+..|+. ++++||+ ||||.+++...+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            445566677777776666777787775 569999999986  455566666666666 6689996 99999766653322


Q ss_pred             H-HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       148 ~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      . ....+....  +.  .                    .....++...++.++..+...+...++..|..++++      
T Consensus        81 ~~~~~~~~~~~--~~--~--------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------  130 (390)
T TIGR02718        81 SACLASLALVG--PD--V--------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------  130 (390)
T ss_pred             HHHHHHHHcCC--cc--h--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence            2 222222110  00  0                    112233344455566667777777777778777776      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ++...+....+..+|..+|+.+.+++.+..||+..|++.++..++..+..+.
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777888999999998999999999999999988777665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.66  E-value=6.1e-16  Score=157.91  Aligned_cols=180  Identities=22%  Similarity=0.223  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhcc-chHHH-HHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWT-IAIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-GR~~~-~~~~~~~~~  147 (605)
                      -+|.+.+..++..+..|++..|.|.|+.+..|+|..++++..+.|-.+...++++.||+|||++ |||.. -++++++.+
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999999999998 76554 445566666


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.+...++       |+                   .+..+..+..+++|+...+++-.+.....|..|++-      -
T Consensus       333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a  380 (448)
T COG2271         333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A  380 (448)
T ss_pred             HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence            666666554       21                   456777888889999999988888888899999988      7


Q ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       228 ~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      +++.++..++..+ |+.++....+++.|.+||...|++..+.++++.++++...+
T Consensus       381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            7777777776666 89999999999999999999999888777776665554443

>PRK09669 putative symporter YagG; Provisional

Probab=99.66  E-value=1e-13  Score=150.36  Aligned_cols=174  Identities=10%  Similarity=0.046  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchH-HHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRY-WTIAIFTTIYLAG  149 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~-~~~~~~~~~~~~~  149 (605)
                      -.+..+..++....+..+++.|+++.+|+++..++.+..+..+..++..|+.|+++||.   +||| +.++++.+...+.
T Consensus        14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~   93 (444)
T PRK09669         14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVV   93 (444)
T ss_pred             hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHH
Confidence            33444555666666778899999999999999999999999999999999999999993   3875 4555666666666


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~r~  228 (605)
                      .+++...   |.....                   .....+++..++.+++..+......++.+|+.++ ++      |.
T Consensus        94 ~~l~f~~---p~~~~~-------------------~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~  145 (444)
T PRK09669         94 CLLTFYT---PDFGAT-------------------GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RH  145 (444)
T ss_pred             HHHHHhC---CCCCcc-------------------hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HH
Confidence            5554432   111000                   3455555655666777777777788999998854 44      88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~~~~~~~~i~~~~  275 (605)
                      +..++.....++|..+++.+...+..       ..||+..+.+.+++.++..++
T Consensus       146 ~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        146 SLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88888777778887777665443332       246777777666665544443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=2.9e-14  Score=142.10  Aligned_cols=163  Identities=12%  Similarity=-0.000  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007405           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (605)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~  158 (605)
                      ..+-...-.....+.+-+....|.+..+..++......+..++....|.++|++ |||+.+.+......+.-++...+  
T Consensus        87 wmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s--  163 (528)
T KOG0253|consen   87 WMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS--  163 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC--
Confidence            333333333445555566777888888999999999999999999999999997 99999888777665555555543  


Q ss_pred             ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHH
Q 007405          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (605)
Q Consensus       159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  238 (605)
                                                .|+..+++.|.+.|+|.|+ .|...++-.|..|..+      |..-.-+. ...
T Consensus       164 --------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~w  209 (528)
T KOG0253|consen  164 --------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFW  209 (528)
T ss_pred             --------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHH
Confidence                                      5778899999999999999 8999999999999988      77766655 667


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       239 ~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .+|.++...+.-.+..+.||||..........+.....++
T Consensus       210 aig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w  249 (528)
T KOG0253|consen  210 AIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVW  249 (528)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhh
Confidence            8888888888777778889999877766544444433333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.65  E-value=3.7e-14  Score=154.93  Aligned_cols=172  Identities=10%  Similarity=0.001  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhh----hccch-HHHHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGR-YWTIAIFTTIYLAG  149 (605)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~GR-~~~~~~~~~~~~~~  149 (605)
                      .+..+...+....+..+++.|+++.+|+++..++.+..+..+.-++..|+.|+++|    |+ || |+.++++.+...++
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV   90 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence            34455566666677888999999999999999999999999999999999999999    54 98 55666677777766


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC-CCCchhhhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~-~~~~~~~~~r~  228 (605)
                      ..++...   |.. +                  +......+++..++.+++.........++.+|+.+ +++      |.
T Consensus        91 ~~llf~~---p~~-~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~  142 (473)
T PRK10429         91 LFLLFSA---HLF-E------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE  142 (473)
T ss_pred             HHHHHcC---CCC-C------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence            6555432   100 0                  00234445555566778888888888999999985 555      88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~-------~gw~~~f~~~~~~~~i~~~~  275 (605)
                      +..++-....++|+.+.+.+...+...       .+|++...+.+++.++..+.
T Consensus       143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~  196 (473)
T PRK10429        143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII  196 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            888886666677766665554433221       24565555555544444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.64  E-value=2.1e-13  Score=144.72  Aligned_cols=376  Identities=15%  Similarity=0.111  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~  151 (605)
                      ..+....++....+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++..+...
T Consensus         5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~   83 (400)
T PF03825_consen    5 FRLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence            345555666666666667889999975 6799999999999999999999999999999974567777776666555444


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (605)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~  231 (605)
                      .....                            .+.+.+++..++..+......|...++.-+...++..+  =||-|..
T Consensus        84 ~~~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~--YG~iRlw  133 (400)
T PF03825_consen   84 LLAFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKD--YGRIRLW  133 (400)
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCC--CCcchhh
Confidence            44332                            34566666667778887777788887777666533211  1244444


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhhc---hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhh
Q 007405          232 NFFYLSVTVGAIVAFTL-VVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (605)
Q Consensus       232 ~~~~~~~~ig~~i~p~i-~~~l~~~~g---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  307 (605)
                      |-      +|-+++... ++++....+   ..+.+++.+...++... +.+..++.+.++..++...+            
T Consensus       134 GS------iGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~~~~------------  194 (400)
T PF03825_consen  134 GS------IGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSAKESVKK------------  194 (400)
T ss_pred             hh------HHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH-HHHhCCCCccccccCCCccc------------
Confidence            33      333333221 222222222   23345544433322221 12222222110000000000            


Q ss_pred             ccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHH
Q 007405          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIM  387 (605)
Q Consensus       308 ~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  387 (605)
                                                    .   ...+.              +++     .++++..+.++..++....
T Consensus       195 ------------------------------~---~~~~~--------------~~l-----lk~~~~~~Fll~~~l~~~~  222 (400)
T PF03825_consen  195 ------------------------------L---LGLDA--------------LKL-----LKNPRFLVFLLAAFLIGIS  222 (400)
T ss_pred             ------------------------------c---cchHH--------------HHH-----hcCccHHHHHHHHHHHHHH
Confidence                                          0   00000              000     0011111111111111111


Q ss_pred             HHHHHhhhhhHHHHHHhhhccCCCC--e------eeCC----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          388 LNVILTEFLTLSVQQAYTMNTHMGK--L------KLPV----TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA  455 (605)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~--~------~ip~----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~  455 (605)
                      . ..+....+.+.+...+.+....+  +      .+|.    ++..+|++..+.+.++++..++=..+++....      
T Consensus       223 ~-~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~------  295 (400)
T PF03825_consen  223 H-AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD------  295 (400)
T ss_pred             H-HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence            1 11122222222221111111101  0      1222    55566777777777777665555555554310      


Q ss_pred             hhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHH-HhhHHHHHHHHHHHHhhc
Q 007405          456 ISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSIIKS  534 (605)
Q Consensus       456 ~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~lg~~l~~~l~~~i~~  534 (605)
                                 +.+ .....+....++.|+..++...+...++.+.+|++.|++++++++. ..++|..+|..+.|.+.+
T Consensus       296 -----------~~~-~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  296 -----------PWP-FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             -----------CcH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                       000 0111122334568999999999999999999999999999999886 578999999999999887


Q ss_pred             ccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          535 VTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  580 (605)
Q Consensus       535 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  580 (605)
                      ..|  .....          .+..++.+.+++.++..++++++.|+
T Consensus       364 ~~g--~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  364 AFG--ARGMF----------DWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             Hhc--chhhh----------hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            544  11111          12345666677777777777776543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1.1e-14  Score=149.44  Aligned_cols=142  Identities=16%  Similarity=0.172  Sum_probs=105.5

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 007405          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (605)
Q Consensus       102 ~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  181 (605)
                      .++...+.+..+..++.++++++.||++|++ |||+++...+++.++++++++++.                     |.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~  138 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT  138 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence            5566778888889999999999999999997 999999999999999999776641                     111


Q ss_pred             ccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHhh--
Q 007405          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL----SVTVGAIVAFTLVVYIQME--  255 (605)
Q Consensus       182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~----~~~ig~~i~p~i~~~l~~~--  255 (605)
                      +...-+.++...|+++|+|.|+-+|+..+..+|....+.      |+...+....    +...|+.++-++..-....  
T Consensus       139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            221356788899999999999999999999999999888      8887776333    3344444444333322111  


Q ss_pred             ---------hchHHHHHHHHHHHHH
Q 007405          256 ---------HGWGSAFGALAIAMGI  271 (605)
Q Consensus       256 ---------~gw~~~f~~~~~~~~i  271 (605)
                               .=||..|.+.++..++
T Consensus       213 ~~~~~~~ld~vWRl~~glg~vpa~~  237 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGLGAVPALL  237 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHH
Confidence                     1289888776665443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=3e-14  Score=156.39  Aligned_cols=180  Identities=12%  Similarity=0.031  Sum_probs=133.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      ++|+.....+...++....+|++..++|.|+++.+|++..++.+......++..++.+++|+++||+ |||+++.++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~  325 (490)
T PRK10642        247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA  325 (490)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            3555555555555666788889999999999999999988888888888888999999999999997 999998888765


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+.+.....     .                    .+...+++++++.|++.++..+....+..|.+|++.     
T Consensus       326 ~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~-----  375 (490)
T PRK10642        326 LFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI-----  375 (490)
T ss_pred             HHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-----
Confidence            4444333222100     0                    245567778888888777777778888899999999     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~  277 (605)
                       |++++++.+....+++.++|.+.+++.+..+ |+.++++..+..++.++..+
T Consensus       376 -Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        376 -RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence             9999998555566677899999999887654 67666655555544444433

>PTZ00207 hypothetical protein; Provisional

Probab=99.61  E-value=5.3e-12  Score=138.76  Aligned_cols=178  Identities=9%  Similarity=0.001  Sum_probs=130.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      .++|..+...+.+..+.... |++.. ....+++++|++..+.+++.++... ..++.++.|+++||+ |||++++++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~-y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFM-YAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            45666555555555444333 44443 4557899999999999988876443 345667789999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      ++.++.++++++...  ...                    .+.+.+++.|++.|+|.+...+.....+.++|| ++    
T Consensus       100 l~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~----  152 (591)
T PTZ00207        100 VFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN----  152 (591)
T ss_pred             HHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence            999999998885220  000                    367889999999999999888888888999997 56    


Q ss_pred             hhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 007405          225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i-~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (605)
                        |+...++...+..+|+.+ +++..+++.  .+|+..|++.+++.++..++.+
T Consensus       153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        153 --RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999975 555555554  3577777776666554444433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.60  E-value=4.7e-14  Score=147.46  Aligned_cols=376  Identities=10%  Similarity=0.003  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ..+......++..+++....++.+.+++++.|++.++.|.+.++..+...+.+|+.|.++||+ |.||-++....+..+.
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence            466666666776677666788999999999999999999999999999999999999999997 9666554443332221


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      ......-...|.+.                     .|. ...+++-+..++...+..|...++..+..          |.
T Consensus        87 ~~pff~~v~~pll~---------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s----------r~  135 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQ---------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS----------RR  135 (412)
T ss_dssp             CHHHHHHTHHHHHH---------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH----------HH
Confidence            11111110111111                     121 11112112223333333444444433222          22


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHh
Q 007405          229 RFFN--FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (605)
Q Consensus       229 ~~~~--~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  306 (605)
                      ..+-  -......+|.+++..++|++.+ .+-...||+.....++..++.+..++...+..+..+               
T Consensus       136 ~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~---------------  199 (412)
T PF01306_consen  136 NGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD---------------  199 (412)
T ss_dssp             HSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST---------------
T ss_pred             hcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc---------------
Confidence            2222  2333567888889999998886 355678887665544444433333222111100000               


Q ss_pred             hccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHH
Q 007405          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI  386 (605)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  386 (605)
                                     .. .+          ..+..+..|.                    .++-..|+++....+.....
T Consensus       200 ---------------~~-~~----------~~~~~~~~~~--------------------~~l~k~~~fw~~~l~v~g~~  233 (412)
T PF01306_consen  200 ---------------AL-GA----------KKDKVSLKDV--------------------LSLFKMRNFWFFVLFVIGVA  233 (412)
T ss_dssp             ---------------TS-SS----------------HHHH--------------------HHHTTSHHHHHHHHHHHHHH
T ss_pred             ---------------cc-cc----------CCCCCcHHHH--------------------HHHhcchhHHHHHHHHHHHH
Confidence                           00 00          0000000000                    00001123333333333333


Q ss_pred             HHHHHHhhhhhHHHHHH---hhhccCCCC----ee----eC----CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          387 MLNVILTEFLTLSVQQA---YTMNTHMGK----LK----LP----VTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYR  451 (605)
Q Consensus       387 ~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~----ip----~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~  451 (605)
                      ..|..+.|+...|....   ...+....|    .+    ++    ..+..+|++.+..+.++.+++++=....++.    
T Consensus       234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~----  309 (412)
T PF01306_consen  234 AIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA----  309 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh----
Confidence            44555554444332210   000111101    00    00    0233445556654444444444443333332    


Q ss_pred             HHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHH-HHHhhHHHHHHHHHHH
Q 007405          452 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNS  530 (605)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~l~~~l~~  530 (605)
                                         .+++++++.-.+-++-..+...+..-|+.+.+|++..++...+. ++..++|..+.+.+.|
T Consensus       310 -------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G  370 (412)
T PF01306_consen  310 -------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG  370 (412)
T ss_dssp             --------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             -------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                               46778888888999999999999999999999999999888885 6899999999999999


Q ss_pred             HhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          531 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  580 (605)
Q Consensus       531 ~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  580 (605)
                      .+.+..|                  ++..|++++.+.++..++.++..++
T Consensus       371 ~lyd~~G------------------~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  371 YLYDRIG------------------FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             hhHhhcC------------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence            9888544                  5568998888877777776666543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.60  E-value=7.9e-14  Score=150.44  Aligned_cols=346  Identities=13%  Similarity=0.074  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhh----hccchHHHHH-HHHHHHHHHHHHH
Q 007405           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGI  153 (605)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~GR~~~~~-~~~~~~~~~~~~~  153 (605)
                      +...+.......+++.|+++.+|+++..++.+..+..+..++..|+.|+++|    |+ ||||.++ ++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4445555556678899999999999999999999999999999999999999    65 9666555 6777777777776


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      ....      |              .+.........+.+..++..++.........++.+|..++.++     |.+..++
T Consensus        90 f~~~------p--------------~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~  144 (428)
T PF13347_consen   90 FSPP------P--------------AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSW  144 (428)
T ss_pred             hccc------c--------------chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHH
Confidence            6420      0              0000002334456666677899999999999999999986432     8888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHh
Q 007405          234 FYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~-------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  306 (605)
                      -.....+|..+...+.+.+.+.       .+|++..++.+++.++..++.....++.+...++.++...           
T Consensus       145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~-----------  213 (428)
T PF13347_consen  145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKIS-----------  213 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccc-----------
Confidence            7777777776555555544322       1588888877777766666655554441111110000000           


Q ss_pred             hccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHH
Q 007405          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI  386 (605)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  386 (605)
                                  +         ++                             .++...    ++ |.+...+...+...
T Consensus       214 ------------~---------~~-----------------------------~~~~~~----~n-r~~~~l~~~~~~~~  238 (428)
T PF13347_consen  214 ------------L---------RD-----------------------------SLRSLF----RN-RPFRILLLAFFLQW  238 (428)
T ss_pred             ------------c---------cc-----------------------------chhhhc----cc-chHHHHHHHHHHHH
Confidence                        0         00                             000000    00 11111111111111


Q ss_pred             HHHHHHhhhhhHHHHHHhhhccCCCCe----e------eCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          387 MLNVILTEFLTLSVQQAYTMNTHMGKL----K------LPV-TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA  455 (605)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------ip~-~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~  455 (605)
                      +.+........++.....+.+...+.+    .      .|. .+..+|.+.++.+..+.++.+++.+++.+..       
T Consensus       239 ~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------  311 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-------  311 (428)
T ss_pred             hhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-------
Confidence            111111111122222222222111100    0      111 3333444555556778777777777766652       


Q ss_pred             hhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcch-------hHHHHHHHHHHHHhhHHHHHHHHH
Q 007405          456 ISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-------AMKSIGSAYAALAGGLGCFAASIL  528 (605)
Q Consensus       456 ~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~~lg~~l~~~l  528 (605)
                                   + .+.+++.+..++.|++.+..++...++..+..+.       +..|...|++++...++..++..+
T Consensus       312 -------------~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  312 -------------P-GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             -------------h-hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence                         1 2567788888899999999999989888887763       456999999999999999999999


Q ss_pred             HHHhhcccC
Q 007405          529 NSIIKSVTG  537 (605)
Q Consensus       529 ~~~i~~~~~  537 (605)
                      .+.+....|
T Consensus       378 ~g~~l~~~G  386 (428)
T PF13347_consen  378 VGLLLALVG  386 (428)
T ss_pred             HHHHHHHhC
Confidence            998877554

>PRK11462 putative transporter; Provisional

Probab=99.59  E-value=2.5e-12  Score=139.91  Aligned_cols=178  Identities=11%  Similarity=0.060  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchHHHHH-HHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLAG  149 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~~~~~-~~~~~~~~~  149 (605)
                      -.+..+..++.+..+..++..|+++.+|+++..++.+..+.-+.-++.-|+.|+++||.   +||||..+ ++.+...++
T Consensus        14 Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~   93 (460)
T PRK11462         14 YGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIV   93 (460)
T ss_pred             hccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHH
Confidence            33455555666666778899999999999999999999999999999999999999973   58765554 566777777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+++...   |...+.                   .....+++.-++..++.........++.+|+.++.++     |.+
T Consensus        94 ~~llf~~---p~~s~~-------------------~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~  146 (460)
T PRK11462         94 CVLAYST---PDLSMN-------------------GKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RIS  146 (460)
T ss_pred             HHHHHhC---CCCCcc-------------------hHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHH
Confidence            6665542   111010                   2244455555667888888888888999999875432     999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh-------chHHHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~-------gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ..++...+.++|..+++.+...+....       +|+....+.+++.++..++.+.
T Consensus       147 l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        147 LQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999988888888888877765544332       4666555555554444433333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.58  E-value=9.1e-14  Score=156.24  Aligned_cols=208  Identities=14%  Similarity=0.094  Sum_probs=155.7

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~  143 (605)
                      +..+++.++..+....+......++.....+.+.++++++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~  105 (633)
T TIGR00805        27 LFSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGC  105 (633)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecH
Confidence            345566554555545555555556777777888999999999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccc--------------cCCCCCcccccc-----cc--cCCCCCcc--chhHHHHHHHHHHHHHh
Q 007405          144 TIYLAGLTGITLCATMKV--------------FMPNQDNCDRIS-----QL--LGSCEPAK--SWQMLYLYTVLYITGFG  200 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~c~~~~-----~~--~~~~~~~~--~~~~~~~~~~~~l~g~g  200 (605)
                      +++.+|.+++++......              .....+.|...+     +.  ...|....  ...+..++++|+++|+|
T Consensus       106 ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG  185 (633)
T TIGR00805       106 AIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG  185 (633)
T ss_pred             HHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence            999999999887632110              000122342110     00  01233222  12456788999999999


Q ss_pred             hcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------ch
Q 007405          201 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GW  258 (605)
Q Consensus       201 ~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~----------------------gw  258 (605)
                      .+...+...+++.|.+|+++      |+..+++++.+..+|..+|+++++++.+.+                      +|
T Consensus       186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW  259 (633)
T TIGR00805       186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW  259 (633)
T ss_pred             CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence            99999999999999999999      999999999999999999999999887532                      27


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007405          259 GSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       259 ~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +..|++.+++.++..+.++.
T Consensus       260 wl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       260 WIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77888877776665544443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.54  E-value=3.4e-12  Score=137.73  Aligned_cols=149  Identities=12%  Similarity=0.065  Sum_probs=124.0

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 007405           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (605)
Q Consensus        98 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  177 (605)
                      ++++....+.+.+.++|.++++++.+++|.|.||+ .-.+.+..+.++..+..++....                     
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~---------------------  131 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV---------------------  131 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            56778888899999999999999999999999997 86666666655555444343332                     


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 007405          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----  253 (605)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~----  253 (605)
                             .+.+.+++.|++.|+..++.+|+...+++.+|.+++      |+.-+++++.+..+|.++|.+++..+.    
T Consensus       132 -------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  132 -------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             -------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence                   578999999999999999999999999999999999      999999999999999999999988763    


Q ss_pred             --hhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          254 --MEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       254 --~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                        ...||||.|.+.+++.++..++.++..+
T Consensus       199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             CCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence              3468999999999887666655444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=9.6e-13  Score=143.63  Aligned_cols=176  Identities=16%  Similarity=0.083  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .+|...+..++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.+...+..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence            477777888888888888889999999999999999999999999999999999999999997 9988776655444433


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      ...+.+...                          .+.....+.+++.|++..+..........|.+|++.      |++
T Consensus       338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~  385 (467)
T PRK09556        338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGV  385 (467)
T ss_pred             HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHH
Confidence            322222100                          234445566677776544444344466779999998      999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHh------------hhchHHHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       230 ~~~~~~~~~~i-g~~i~p~i~~~l~~------------~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +.++.+...++ |+.++|.+.|++.+            ..+|+..|++..++.+++.+..+.
T Consensus       386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            99999988886 77999999999999            578999999887777776555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=3.3e-12  Score=136.21  Aligned_cols=172  Identities=11%  Similarity=0.090  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+..+...++....++....+++.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+.+.++.+...+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~  296 (393)
T PRK15011        218 TLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFY  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            33344444444455555667899999999999999999888887788888899999999997 99998887766555443


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      ......                            .+...+++.+++.+++.|...+....+..|.+|+ +      |+++
T Consensus       297 ~~~~~~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~  341 (393)
T PRK15011        297 AGMLMA----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA  341 (393)
T ss_pred             HHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence            333222                            2445566677777777776666677778888874 4      7889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .++++...++|..++|.++|++.+..||+..|++.+++.+++++..+.
T Consensus       342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999888889999999999999999899999998877777666655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.47  E-value=1.8e-10  Score=124.86  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCc
Q 007405          473 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  552 (605)
Q Consensus       473 ~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~  552 (605)
                      .+.+.+.-++.|+..+-..+..-++..+..|++..+...|++.+.....+++||.+.+.+.+.++               
T Consensus       380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------  444 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------  444 (477)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence            34444455678899999999999999999999999999999999999999999999999998776               


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHH
Q 007405          553 TGRFDYLYWLLAVLSVINFCAFLY  576 (605)
Q Consensus       553 ~~~~~~~f~~~a~l~~v~~~~~~~  576 (605)
                        +.++.+..+.++.++++++.+.
T Consensus       445 --~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  445 --SQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             --CchhHHHHHHHHHHHHHHHHhh
Confidence              1235567777777777766643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.43  E-value=6.6e-12  Score=142.08  Aligned_cols=132  Identities=9%  Similarity=0.009  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 007405          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (605)
Q Consensus       111 ~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  190 (605)
                      ..+..++..++.+++|+++||+ |||++++++.++..++.+++++.                            .+...+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l  651 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM  651 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence            4455678889999999999997 99999999999888888777765                            234456


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 007405          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (605)
Q Consensus       191 ~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~  270 (605)
                      ++.+++.+++.++..+...++++|++|++.      |++++++.+....+|+++||.+++++.+. +...+|++.+++.+
T Consensus       652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll  724 (742)
T TIGR01299       652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA  724 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence            666777788888888899999999999999      99999999999999999999999988764 45667777776666


Q ss_pred             HHHHHHHH
Q 007405          271 ISNMLFFI  278 (605)
Q Consensus       271 i~~~~~~~  278 (605)
                      ++.++.++
T Consensus       725 l~~ll~~~  732 (742)
T TIGR01299       725 CGGLLALK  732 (742)
T ss_pred             HHHHHHHh
Confidence            65555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=1.2e-11  Score=133.90  Aligned_cols=183  Identities=13%  Similarity=-0.010  Sum_probs=133.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      ++++.........++....+|.+.++++.|+++.+|.+......+.........++.++.|+++||+ |||+++.++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3444444445566677778888999999999999999987666555566677788889999999997 999998888766


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+.+.....     ..                   .....+++..++.+++.+...+...++.+|.+|++.     
T Consensus       326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~-----  376 (438)
T PRK09952        326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY-----  376 (438)
T ss_pred             HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence            5554433332210     00                   123344445566678888878888999999999988     


Q ss_pred             hhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHHh
Q 007405          226 HLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       226 ~r~~~~~~~~~-~~~ig~~i~p~i~~~l~~~~--gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                       |+++.++.+. +..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+..
T Consensus       377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence             9999998544 56689999999999998754  48888877777777666665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.41  E-value=5.6e-12  Score=137.01  Aligned_cols=177  Identities=17%  Similarity=0.144  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhcc-chHHHH-HHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-GR~~~~-~~~~~~~~  147 (605)
                      .+|...+..++.....+++..++|.|+++..|++..+++.....+.++..++.+++|+++||+. |||+.. .....+..
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~  333 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  333 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence            4666777777777777888899999999999999999998888888899999999999999961 344332 22223333


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.+...+.       +.                   .+....++..++.|.+..+.......+..|.+|++.      |
T Consensus       334 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~  381 (452)
T PRK11273        334 IATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------A  381 (452)
T ss_pred             HHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------h
Confidence            333222221       00                   133333444455555443333334456779999998      9


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          228 DRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i-~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ++++++.+...++|+.+ +|.+.+++.+..||++.|++.++..+++++....
T Consensus       382 g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        382 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888655 7999999999999999999887776666555443

>PRK03699 putative transporter; Provisional

Probab=99.41  E-value=1.6e-11  Score=130.96  Aligned_cols=173  Identities=14%  Similarity=0.150  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++...+..++.....+++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            355555666666677778889999999999999999999999999999999999999999997 9999888777665555


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      ..+....                            .+...+.+..++.|++.++..+...++..|..|.+       +++
T Consensus       285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~  329 (394)
T PRK03699        285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK  329 (394)
T ss_pred             HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence            4444332                            23344455567788888877788788888877643       455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ..++.....++|..++|.+.|++.+..|++..+++.+++.+++.++...
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            6677777888999999999999999999999988877766666544333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.40  E-value=3.2e-12  Score=135.18  Aligned_cols=172  Identities=14%  Similarity=0.041  Sum_probs=132.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +++.++......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~  295 (394)
T TIGR00883       217 HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLA  295 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence            334466667777777788888888999999999999999999999999999999999999999997 9999887655444


Q ss_pred             HHHH-HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          147 LAGL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       147 ~~~~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      .+.. .......      ..                   .+...+++..++.|++.+...+...+++.|.+|++.     
T Consensus       296 ~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-----  345 (394)
T TIGR00883       296 ALLAVPLLMALL------DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV-----  345 (394)
T ss_pred             HHHHHHHHHHHh------cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-----
Confidence            3332 1211110      00                   234555666778888888888999999999999998     


Q ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHH
Q 007405          226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMG  270 (605)
Q Consensus       226 ~r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~  270 (605)
                       |++++++ +..+..+|..++|.+++++.+..| |++.++...+..+
T Consensus       346 -~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       346 -RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             -eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence             8888887 455667899999999999999888 8877666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.40  E-value=1.1e-09  Score=113.02  Aligned_cols=368  Identities=12%  Similarity=0.039  Sum_probs=197.6

Q ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccc-----hHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYW-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        96 l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----R~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      +..+++++..-.+..+....+... ..+..|+.||+. +     ||. -+..+.++...+..+...+........     
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~-----   78 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG-----   78 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc-----
Confidence            346788888877877777655544 688899999997 6     444 444566777766666655432111000     


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~  249 (605)
                             ..-+.+.........++..+.|+|.+....+..++.+|..|+++      |++..++.+...-+|..++..+.
T Consensus        79 -------~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen   79 -------QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             -------cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence                   00011111122334445567899999999999999999999999      99999999999999999999999


Q ss_pred             HHHHhhhch-HHHHHHHHHH---HHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccccccccccCCC
Q 007405          250 VYIQMEHGW-GSAFGALAIA---MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK  325 (605)
Q Consensus       250 ~~l~~~~gw-~~~f~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~l~~~~~~  325 (605)
                      +.+.+.++- |..-.+..+.   .++.++ ..+.. |.+..+....                                  
T Consensus       146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~i-a~wg~-E~r~~~~~~~----------------------------------  189 (403)
T PF03209_consen  146 GRLLDPFSPERLIQVIQGVALIALLLNLI-ALWGQ-EPRRSRRAAA----------------------------------  189 (403)
T ss_pred             HHHccccCHHHHHHHHHHHHHHHHHHHHH-HHHhc-ccCCcccccC----------------------------------
Confidence            988877652 3222222221   122211 12211 1111110000                                  


Q ss_pred             cccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhh
Q 007405          326 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT  405 (605)
Q Consensus       326 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (605)
                                .++++..+.+.......              +  .+.+++.  ..+++....++.- ......|--+..+
T Consensus       190 ----------~~~~~~~f~~a~~~~~~--------------~--~~a~~f~--~fl~l~t~a~~~Q-D~iLEPygg~Vfg  240 (403)
T PF03209_consen  190 ----------AERPRPPFREAWRQVWA--------------S--PQARRFF--VFLFLGTLAFFMQ-DVILEPYGGEVFG  240 (403)
T ss_pred             ----------CCCCCccHHHHHHHHHh--------------C--CChhHHH--HHHHHHHHHHHhh-HHHcCCchhHHcC
Confidence                      00000011111000000              0  0111111  1111111111110 0000000001111


Q ss_pred             hccCC--------C-----CeeeCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcch
Q 007405          406 MNTHM--------G-----KLKLPVTCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  472 (605)
Q Consensus       406 ~~~~~--------~-----~~~ip~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  472 (605)
                      |+...        +     ++.+-.....++.++.+...+|....++++........                   . .+
T Consensus       241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~-~~  300 (403)
T PF03209_consen  241 MSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP-------------------L-GS  300 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-------------------c-cc
Confidence            11000        0     00000000112223333344566655666555443321                   1 35


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCc
Q 007405          473 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  552 (605)
Q Consensus       473 ~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~  552 (605)
                      .+.+.+..+++|++.++......+...+.++++..|..+|.|...+.++..++..+.+.+.+...       .+..++ .
T Consensus       301 ~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~-------~~~~~~-~  372 (403)
T PF03209_consen  301 PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR-------ALFGNS-P  372 (403)
T ss_pred             chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccCC-c
Confidence            67788899999999999999999999999999999999999999999999999999998876433       111110 1


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHH
Q 007405          553 TGRFDYLYWLLAVLSVINFCAFLY  576 (605)
Q Consensus       553 ~~~~~~~f~~~a~l~~v~~~~~~~  576 (605)
                      ...|..+|.+=+++.++++++...
T Consensus       373 ~~aY~~VF~lEa~ll~~a~~ll~~  396 (403)
T PF03209_consen  373 ALAYGVVFALEAVLLLAALVLLGR  396 (403)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Confidence            123455566555555555554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.40  E-value=2.3e-11  Score=129.75  Aligned_cols=167  Identities=13%  Similarity=0.060  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007405           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (605)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~  158 (605)
                      ++..++++.+..+++.|+.+ .|+  .+.+...+.+.++..++.++.|+++||+ |||+.+.++.++..++.+.....  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--  299 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA--  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence            34455566667788888754 465  3445666778888889999999999997 99999988888777777666553  


Q ss_pred             ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHH
Q 007405          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (605)
Q Consensus       159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  238 (605)
                                                .+...+++++++.|++.+...+.......|.+|++.      |++..++++...
T Consensus       300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  347 (399)
T PRK05122        300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL  347 (399)
T ss_pred             --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence                                      345556677888999999888888888889999888      999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccc
Q 007405          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (605)
Q Consensus       239 ~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~  283 (605)
                      ++|..++|.+.|++.+..||++.|++.+++.+++++......++.
T Consensus       348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999988887777766655544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=1.8e-11  Score=127.03  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHH-HHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~-~~~~~~~~~~~~  149 (605)
                      .+......++..........+.+.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++.++..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence            44455555666666667778888898888899999999999999999999999999999997 9999 999999988888


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+.....                            .+...+++..++.|++.+...+...++..|.+|+++      |++
T Consensus       256 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  301 (352)
T cd06174         256 LLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT  301 (352)
T ss_pred             HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence            8877764                            346677788899999999999999999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      .+++.+...++|..++|.+.+++.+..+|++.|++.+++.+++.+..
T Consensus       302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998999999999888877766554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.39  E-value=1.8e-10  Score=121.99  Aligned_cols=350  Identities=12%  Similarity=0.094  Sum_probs=214.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchHH-HHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIY  146 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~~-~~~~~~~~~  146 (605)
                      -+.-....+..+..+-.+..++..|.++.+|+++..++.+..+.-+.-++.-|+.|.++||.   +||+| -++.+.+.+
T Consensus        14 ki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~   93 (467)
T COG2211          14 KIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF   93 (467)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence            34444555666667667788999999999999999999999999999999999999999985   58655 455666778


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .+..+++..+..   ...+                   .+....++.-++.+++...+.....++.+++.++.++     
T Consensus        94 ~i~~~l~F~~p~---~~~~-------------------~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----  146 (467)
T COG2211          94 AIVAVLLFITPD---FSMT-------------------GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----  146 (467)
T ss_pred             HHHHHHHHcCCC---cccC-------------------cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----
Confidence            888777776521   0000                   3445555666788999999998899999999876432     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHHHHHHHHhcccccc-cCCCCC-chhHHH
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH-RLPGGS-PLTRVA  297 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~  297 (605)
                      |.+..++-....++|..+...+...+..       ..||+....+.+++..+..+..+...+|... ..+.++ ......
T Consensus       147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~  226 (467)
T COG2211         147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLK  226 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHH
Confidence            9999999888888887766555544433       2456666666555555555444443333211 111100 000000


Q ss_pred             HHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhh
Q 007405          298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR  377 (605)
Q Consensus       298 ~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  377 (605)
                      ..+....+                                                                  .|.++.
T Consensus       227 ~~~~~~~~------------------------------------------------------------------Nrp~~~  240 (467)
T COG2211         227 DSFLLIFK------------------------------------------------------------------NRPLLL  240 (467)
T ss_pred             HHHHHHHc------------------------------------------------------------------cchHHH
Confidence            00000000                                                                  011111


Q ss_pred             hhhhhHHHHHHHHHHhhhhhHHHHHHh-hhccC--CC---------C-ee-eCC-CCCCCCCChhHHHHHHHHHHHHHHH
Q 007405          378 LVPIPACTIMLNVILTEFLTLSVQQAY-TMNTH--MG---------K-LK-LPV-TCHPRGASQLQRVGIGLAVSILSVI  442 (605)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~---------~-~~-ip~-~~~~~~~~~~~~i~~G~~~~~~~~~  442 (605)
                      .+.   ...+++..++...+...+... .++..  ..         + .. ++. .+..++++.++...+|.++.+++.+
T Consensus       241 ~l~---~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         241 LLL---MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHH---HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            111   122222222222221111100 00000  00         0 00 111 3344455666667778777777776


Q ss_pred             HHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhh-------cchhHHHHHHHHHH
Q 007405          443 WAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE-------APDAMKSIGSAYAA  515 (605)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~-------~P~~~rg~~~g~~~  515 (605)
                      .+.+..                    . .+.++++...++.++|.+...+...+++.+.       .-.+..|...|...
T Consensus       318 ~~~f~~--------------------~-~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t  376 (467)
T COG2211         318 LLYFTP--------------------A-GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT  376 (467)
T ss_pred             HHHhhc--------------------C-cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence            666551                    1 3556666777888888888888888888764       44566788999999


Q ss_pred             HHhhHHHHHHHHHHHHhhcccC
Q 007405          516 LAGGLGCFAASILNSIIKSVTG  537 (605)
Q Consensus       516 ~~~~lg~~l~~~l~~~i~~~~~  537 (605)
                      +++-+|..++..+.+++....|
T Consensus       377 F~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         377 FFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999998877554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.39  E-value=1.2e-11  Score=129.90  Aligned_cols=169  Identities=15%  Similarity=0.076  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+......++..........+.+.|. +++|.+..+.+...+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence            33444444444444444555566665 56899998899999999999999999999999997 99999999988888877


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +++.+...                          .+...+++..++.+++.+...+..+++..|.+|+++      |++.
T Consensus       285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~  332 (377)
T TIGR00890       285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN  332 (377)
T ss_pred             HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence            76655311                          122334455677888888888888889999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~  273 (605)
                      +++++....+|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus       333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988777665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.38  E-value=2.7e-11  Score=127.74  Aligned_cols=163  Identities=10%  Similarity=0.031  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 007405           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (605)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~  157 (605)
                      .++.....+....+++.|+.+++|.+..+.++......+...++.+++|+++||+ |||+++.++.++..++....... 
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-  285 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD-  285 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH-
Confidence            3333333444556788999999999999999888777777788889999999997 99999888776655544443332 


Q ss_pred             hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHH
Q 007405          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (605)
Q Consensus       158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~  237 (605)
                                                 .+.+.+++.+++.|++.+...+....+..|.+|+ +      +++++++++..
T Consensus       286 ---------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~  331 (375)
T TIGR00899       286 ---------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNT  331 (375)
T ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHH
Confidence                                       3455666677788888888778888888898875 3      56999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       238 ~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      .++|..++|.+++++.+..||+..|++.++..+++.++.
T Consensus       332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887776666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.37  E-value=2.4e-11  Score=130.58  Aligned_cols=178  Identities=11%  Similarity=0.044  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      ..++..++..........+++.|+.+ .|.+        ....+...++..+...++.++.|+++||+ |||+++.++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~  289 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV  289 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34444444444444455667778754 4544        35668888888889999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      +..++...+.....      .                  ..+...+++.+++.|++.+...+....+++|.+|++.    
T Consensus       290 ~~~v~~~l~~~~~~------~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~----  341 (418)
T TIGR00889       290 AWALRFGFFAYGDP------E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI----  341 (418)
T ss_pred             HHHHHHHHHHHcCc------c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence            88887666655310      0                  0134566777889999999888888999999999998    


Q ss_pred             hhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          225 THLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       225 ~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~~~------~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                        |++.+++.+ ....+|..+||.++|++.+.      +||++.|.+.+++.++..+++....++
T Consensus       342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              999999997 56789999999999999987      469999988877766666655555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.36  E-value=8.3e-11  Score=125.44  Aligned_cols=177  Identities=15%  Similarity=0.041  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+...+..++...+++++..+++.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence            4555555666677888889999999976 899999999999999999999999999999997 99999988887777766


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR  229 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~r~~  229 (605)
                      .......                           .+...+.  .++.|++.+...+.......+.+++ ++      |++
T Consensus       285 ~~~~~~~---------------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~  329 (393)
T PRK09705        285 CGFIWLP---------------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK  329 (393)
T ss_pred             HHHHHcc---------------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence            5544320                           1111222  2356788888778777777788764 45      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhccccc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYR  284 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~  284 (605)
                      .+++.+...++++.++|.+.|++.+..| |...|++.++..++..++.....++.+
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999886 788888877777666666555555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=4.5e-11  Score=126.13  Aligned_cols=179  Identities=12%  Similarity=-0.004  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH-HHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLA  148 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~-~~~~~~~~~  148 (605)
                      .++...+..++.....+.+..+++.|+.+.+|.+..+.++......++..++.+++|+++||+ |||+.. ........+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~  294 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII  294 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence            466677777788888888889999999999999999999999999999999999999999997 988611 111111111


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      +.+...+.......  .                   .+....+....+.+++ .+..+...++.+|.+|+++      |+
T Consensus       295 ~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~g  346 (399)
T TIGR00893       295 AGLVLSLLMFATNY--V-------------------NIPYAALALVALGFFG-LGAGAIGWALISDNAPGNI------AG  346 (399)
T ss_pred             HHHHHHHHHHHhcc--c-------------------hhHHHHHHHHHHHHhc-hhhhhHHHHHHHhhcChhH------HH
Confidence            11111111000000  0                   1222333333333334 3378889999999999998      99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~  277 (605)
                      +.+++.+...++|..++|.+.+++.+..| |.+.|++.++..+++.+..+
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888 99999888777666655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.36  E-value=5.1e-11  Score=127.38  Aligned_cols=170  Identities=10%  Similarity=0.004  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007405           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (605)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~  152 (605)
                      ......++....++.+..++|.|+.+ .|++..+.+.....+.++..++.++.|+++||+ |||+.+.++.+...++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            33344455555666777888888865 799999999999999999999999999999997 9999988876665555554


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHH
Q 007405          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (605)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  232 (605)
                      +...                            .+...+.+..++.|++.++..+...++..|.+|+++      |++.++
T Consensus       302 ~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  347 (406)
T PRK11551        302 LAAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVG  347 (406)
T ss_pred             HHhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhh
Confidence            4432                            234445555667788887788888999999999999      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHH
Q 007405          233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       233 ~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +.+....+|..++|.++|++.+..+ |...+++.....+++.++.+.
T Consensus       348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988654 555666555555555444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.35  E-value=7.2e-12  Score=111.77  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH
Q 007405          112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (605)
Q Consensus       112 ~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  191 (605)
                      +.+.++..++.++.|+++||+ |||+.+.++..+..++.+.+...                            .+.+.+.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~   55 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLI   55 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHH
Confidence            345667788899999999997 99999999988888887776654                            3566778


Q ss_pred             HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 007405          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (605)
Q Consensus       192 ~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i  271 (605)
                      +.+++.|++.+...+...++..|.+|+++      |++..++.+....+|..++|.+.+++.+..+|++.|++.++..++
T Consensus        56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        56 IARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            88899999999999999999999999998      999999999999999999999999999888999999887776666


Q ss_pred             HHHHHHH
Q 007405          272 SNMLFFI  278 (605)
Q Consensus       272 ~~~~~~~  278 (605)
                      ..+....
T Consensus       130 ~~~~~~~  136 (141)
T TIGR00880       130 AFILLAF  136 (141)
T ss_pred             HHHHHhh
Confidence            5555444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.35  E-value=4.7e-11  Score=127.61  Aligned_cols=165  Identities=12%  Similarity=0.042  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007405           79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (605)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~  155 (605)
                      ++.......+.++++.|+.+..+....   ..+.+...+.++..++.++.|+++||+ |||+++.++.++..++.+....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence            333444445567778888765443322   234555566677888889999999997 9999999888877766665554


Q ss_pred             hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHH
Q 007405          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (605)
Q Consensus       156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~  235 (605)
                      .                            .+.+.+++.+++.|++.+...+...+.+.+..|+++      |++.+++++
T Consensus       308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~  353 (408)
T PRK09874        308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ  353 (408)
T ss_pred             h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence            3                            345667778888999999999999999999888888      999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       236 ~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ....+|..+||.++|++.+..||++.|++.+++.+++.+..+.
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877776665544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.34  E-value=1.3e-10  Score=123.83  Aligned_cols=174  Identities=14%  Similarity=-0.038  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++......++.....++...+++.|+.+.+|.+..+++++...+.++..++.++.|+++||+ |||+.+ ++..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            33344444555555566677888899888999999999999999999999999999999997 987654 4444433333


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      .......                           .+...+++..++.|++.+...+...+.+.+..| +.      |+++
T Consensus       285 ~~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~  330 (390)
T PRK03545        285 LLLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVA  330 (390)
T ss_pred             HHHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHH
Confidence            3322210                           345566667778888887777777788888766 45      8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      +++++....+|..+||.++|++.+.+|++..|++.+++.+++++......
T Consensus       331 ~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        331 MALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99998889999999999999999999999999998888777776655544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=6.5e-11  Score=127.99  Aligned_cols=180  Identities=15%  Similarity=0.092  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccc--hHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--R~~~~~~~~~~~~  147 (605)
                      .++...+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+  |++......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            35666666666667777788899999998999999999999999999999999999999999622  2332222221111


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      +....+.....                          .+.....+..++.|++..+.........+|.+|++.      |
T Consensus       324 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  371 (434)
T PRK11663        324 LSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A  371 (434)
T ss_pred             HHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence            12111111100                          122223333344454433333334556789999888      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      ++..++.+...++|..++|.+.+++.+..||...|++.+++.+++.+..+...+
T Consensus       372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999888877666555444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.33  E-value=4.7e-11  Score=131.23  Aligned_cols=150  Identities=16%  Similarity=0.122  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      .+..++|.|+++++|++..+++++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+......       + 
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-------~-  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG-------G-  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc-------c-
Confidence            4567899999999999999999999999999999999999999997 999998887766555544333221       0 


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .+.+.+.+..++.++...+..+..++++.|.+|++.      |++.+++++...++|+.+||
T Consensus       364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp  419 (496)
T PRK03893        364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP  419 (496)
T ss_pred             ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence                              233333344444444334445677788999999988      99999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHH
Q 007405          247 TLVVYIQMEHGWGSAFGALAIAM  269 (605)
Q Consensus       247 ~i~~~l~~~~gw~~~f~~~~~~~  269 (605)
                      .++|++.+.+||+..+.+.+...
T Consensus       420 ~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        420 ILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHhccCChHHHHHHHHHHH
Confidence            99999999999988776555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=1.6e-10  Score=122.82  Aligned_cols=168  Identities=9%  Similarity=-0.082  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++..++..++...+.+...++.+.|+++ +|.+..+.+.+.+...++..+..++.|++.||+ |+|+++.++.++..+.
T Consensus       206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~  283 (382)
T TIGR00902       206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR  283 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence            36666666777777788888899999965 899999999998888899999999999999997 9999999999999998


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+..+++                            .+.+.+++..++.|+..+...+....++.+. |+++      |++
T Consensus       284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~  328 (382)
T TIGR00902       284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK  328 (382)
T ss_pred             HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence            8877765                            5677888889999999999999999999987 8777      899


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYL-SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       230 ~~~~~~~-~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (605)
                      +.++++. ...+|..++|.++|++.+..|+ ..|++.+++.++++++
T Consensus       329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999764 6789999999999999999886 5677777666655544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.31  E-value=9.2e-11  Score=126.06  Aligned_cols=163  Identities=12%  Similarity=-0.032  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007405           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (605)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (605)
                      .+++..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++||. ++++.+.++.++..++.+++.+.        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            356677889999888999999999999999999999999999999986 88888888887777776665543        


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHH
Q 007405          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (605)
Q Consensus       165 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i  244 (605)
                                          .+.....++.++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+
T Consensus       310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~  363 (417)
T PRK10489        310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI  363 (417)
T ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence                                345556667778888888777777889999999888      999999999999999999


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       245 ~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      ||.+.|++.+..|++..+++.+.+.++..++.....++
T Consensus       364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999998888877766555444444443333

>PRK12382 putative transporter; Provisional

Probab=99.31  E-value=8.4e-11  Score=125.21  Aligned_cols=162  Identities=14%  Similarity=0.095  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007405           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (605)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~  158 (605)
                      ++....+..+..+.+.|+.+ .|++.  .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.++..+.  
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--  299 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--  299 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc--
Confidence            33445555666777888754 46543  45556667778888999999999997 99999999888888877666553  


Q ss_pred             ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHH
Q 007405          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (605)
Q Consensus       159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  238 (605)
                                                .+...++++.++.|++.+...+...+...|.+|+++      |++.+++++...
T Consensus       300 --------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  347 (392)
T PRK12382        300 --------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQ  347 (392)
T ss_pred             --------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHH
Confidence                                      345566677788899988888888888899999888      999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       239 ~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .+|..++|.+.+++.+..||++.|.+.+++.+++.++.+.
T Consensus       348 ~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        348 DIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988877777665544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.31  E-value=3.6e-11  Score=129.37  Aligned_cols=161  Identities=12%  Similarity=0.089  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405           83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (605)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~  159 (605)
                      ..+.....+++.|+.+.+   +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++..+..++   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~---  312 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA---  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc---
Confidence            333344455777776544   56667778888888888899999999999997 99999999888888887777664   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH-HHHHH
Q 007405          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV  238 (605)
Q Consensus       160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~-~~~~~  238 (605)
                                               .+.+.+++.+++.|++.+...+....++.|.+|++.      |++..+. ++...
T Consensus       313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~  361 (420)
T PRK09528        313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK  361 (420)
T ss_pred             -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence                                     356677778888898888877788889999999887      7777655 66778


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       239 ~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .+|..++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus       362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999877776655544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.30  E-value=7.7e-11  Score=125.37  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=127.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      .+|+.........++.....+++..+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~  313 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA  313 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence            3444344444444444555566778899999999999999999999999999999999999999997 999998888765


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..+..+.....       .                    .+.+.+.++.++.+++.++..+..++++.|.+|+++     
T Consensus       314 ~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  361 (405)
T TIGR00891       314 GQLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ-----  361 (405)
T ss_pred             HHHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence            53322222111       0                    234455566566777777777888899999999998     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  264 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~  264 (605)
                       |++.+++.+...++|..++|.+.|++.+..| |...+..
T Consensus       362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence             9999999999999999999999999999988 7766554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.29  E-value=2.4e-10  Score=121.31  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007405           82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV  161 (605)
Q Consensus        82 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (605)
                      ...+.....++|.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+++.++.++..++.+... .     
T Consensus       213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-----  284 (381)
T PRK03633        213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-----  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-----
Confidence            33444455678888865 699999999989999999999999999999997 999999888877776654432 1     


Q ss_pred             cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHH
Q 007405          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (605)
Q Consensus       162 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig  241 (605)
                                              . ...+..+++.|++.++..|...+...|..|+++      ++...+.++...++|
T Consensus       285 ------------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG  333 (381)
T PRK03633        285 ------------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVG  333 (381)
T ss_pred             ------------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHH
Confidence                                    1 122345566777777778888888999998877      777778888889999


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 007405          242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (605)
Q Consensus       242 ~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (605)
                      ..+||.++|++.+++||++.|.+.+.+.++..+.
T Consensus       334 ~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        334 SLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999877776655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.29  E-value=1.7e-10  Score=124.77  Aligned_cols=161  Identities=15%  Similarity=0.068  Sum_probs=114.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +|+.....+...++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+++.++.++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~  314 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA  314 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            344333334444556667778889999999999999999988888888888999999999999997 9999887765443


Q ss_pred             HHHHHH-HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          147 LAGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       147 ~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      .+...+ ......      .                   .+...+.+..++.+++.+...+....+..|.+|++.     
T Consensus       315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-----  364 (434)
T PRK15075        315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-----  364 (434)
T ss_pred             HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence            322211 111100      0                   122333344455566666666667788999999998     


Q ss_pred             hhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhchH
Q 007405          226 HLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWG  259 (605)
Q Consensus       226 ~r~~~~~~~~~-~~~ig~~i~p~i~~~l~~~~gw~  259 (605)
                       |++++++.+. +..+++.++|.+.+++.+..|+.
T Consensus       365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence             9999998554 44456888999999999988853

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.28  E-value=3.2e-10  Score=122.49  Aligned_cols=171  Identities=11%  Similarity=0.044  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007405           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (605)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~  155 (605)
                      ...++....+|++..++|.|+.+.+|.+..+++...++...+..++.++.|+++||+ |||+++.++.++..+..+....
T Consensus       250 ~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~  328 (432)
T PRK10406        250 GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILS  328 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHH
Confidence            333444677888999999999999999998988888887788888889999999997 9999887766544333322211


Q ss_pred             hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHH
Q 007405          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (605)
Q Consensus       156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~  235 (605)
                      ...     ..                   .+....+....+.+++.+...+....+.+|.||++.      |++++++.+
T Consensus       329 ~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~  378 (432)
T PRK10406        329 ALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSY  378 (432)
T ss_pred             HHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHH
Confidence            100     00                   112221221222223333334556788899999999      999999977


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHH
Q 007405          236 LSV-TVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       236 ~~~-~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (605)
                      ... .+++..+|.+.+++. .+| |...+++.++..+++++..++
T Consensus       379 ~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        379 AVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            654 444556888888664 445 555666555555555554443

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=3.8e-10  Score=120.67  Aligned_cols=175  Identities=14%  Similarity=0.057  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH-HHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~-~~~~~~~~~  149 (605)
                      ++...+..++....+++..+++|.|++ ++|++..+++.+...+.++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence            555666677777888888999998885 5899999999988889999999999999999997 9888764 233333333


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+.+.+...   ...                    .+....++..++.|++.+...+ ..+...|..| ++      |++
T Consensus       302 ~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~  350 (402)
T TIGR00897       302 TLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGA  350 (402)
T ss_pred             HHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHH
Confidence            222222100   000                    2345555667778888777654 3456667544 56      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .+++.+....+|..++|.+++++.+.+||...|++.+++.+++.++..+
T Consensus       351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888777666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=6.6e-11  Score=128.09  Aligned_cols=179  Identities=15%  Similarity=0.065  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++...+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            356666666666777788889999999999999999999999999999999999999999997 7544323333222221


Q ss_pred             H---HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          150 L---TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       150 ~---~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .   ..+...       +.                   .+.....+..++.|++..+..........|.+|++.      
T Consensus       331 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  378 (438)
T TIGR00712       331 TIAVIVYWMN-------PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------  378 (438)
T ss_pred             HHHHHHHHhc-------CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------
Confidence            1   111111       00                   122233333444555443333333456779999988      


Q ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          227 LDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~-~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      |+++.++.+...++|+ .++|.+.|++.+..||.+.|++.....+++.+..+...+
T Consensus       379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988877765 689999999999999999998877766666665554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.26  E-value=4.2e-11  Score=115.63  Aligned_cols=137  Identities=15%  Similarity=0.191  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      ..+..+.+.+.+++.++..++.+.|..-..+.+.++|||.||.+|-|..-++-+++..+|-+..+.-..           
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----------  132 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----------  132 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence            456777788888888888999999999999999999999999889776655555555667666554211           


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~  249 (605)
                                    ...++++..+|++.|+|.-....+.+.+...+|..++      .+-.+++.-....+|..+-..+.
T Consensus       133 --------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm  192 (459)
T KOG4686|consen  133 --------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLM  192 (459)
T ss_pred             --------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeec
Confidence                          1578999999999999988888889999999999999      99999998888888888887778


Q ss_pred             HHHHhhhc
Q 007405          250 VYIQMEHG  257 (605)
Q Consensus       250 ~~l~~~~g  257 (605)
                      +++.+..+
T Consensus       193 ~~ly~~~~  200 (459)
T KOG4686|consen  193 PFLYDTMG  200 (459)
T ss_pred             HHHHHHHH
Confidence            88877654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=5.2e-10  Score=122.80  Aligned_cols=173  Identities=10%  Similarity=0.069  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH-HHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007405           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (605)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~  156 (605)
                      .++.....+....+.++|+.+.+|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+.....
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l  309 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL  309 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566677888988889999999998874 55678999999999999997 99998877766555544333221


Q ss_pred             hhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHH
Q 007405          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (605)
Q Consensus       157 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~  236 (605)
                      ...    +                    .+...+.+..++..++.|...+...++..+..+++.      +++.+++.+.
T Consensus       310 ~~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s  359 (491)
T PRK11010        310 SIT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA  359 (491)
T ss_pred             Hhc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence            100    0                    133333444455455555555666788889999888      8888999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       237 ~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      ..++|..+++.+.|++.+..||+..|.+.+++.++++++....++
T Consensus       360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999989889999999999999999888888777766655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=5.2e-10  Score=121.27  Aligned_cols=183  Identities=13%  Similarity=0.052  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchH--HHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTIY  146 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~--~~~~~~~~~~  146 (605)
                      |.+...++..++.+-+..++......|.++++|++..+...+..+..+...++.+++|++.||+ |.|  ++++++++++
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence            4566677777888888888999999999999999999999888889999999999999999997 988  8888888776


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .+..+.-.+... +.....                   .+.+.+++.-++.|+..|+.++..-++.+++.|+++      
T Consensus       360 ~~i~~~g~~G~~-~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------  413 (477)
T PF11700_consen  360 IIIPLYGLFGFW-PSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------  413 (477)
T ss_pred             HHHHHHHHHHhh-hcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------
Confidence            443322222000 000000                   345667777778999999999999999999999998      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHH
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .+.+|++|.+..-..+.+||++.+.+.+.+| -|+++....++.+++++++..
T Consensus       414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  414 EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999887 888888877777777776544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=7.8e-10  Score=114.79  Aligned_cols=178  Identities=15%  Similarity=0.080  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++..++..++...+.|...+++.+|+++..|+|....++++..|.++..++.+++|+++||  +.|+++.....+..+.
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~  289 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA  289 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence            47888888999999999999999999999999999999999999999999999999999998  7888888887777777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+.+.+..                           .+....++..++.|+...........-.++ .-++.      +..
T Consensus       290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~  335 (394)
T COG2814         290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL  335 (394)
T ss_pred             HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence            77766542                           244555555566777766655555555566 33455      789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~  283 (605)
                      +.+++....|+|-.+|..++|.+.+++|+....++.++..++++++.+...+..
T Consensus       336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999998888887776654433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.23  E-value=2.8e-10  Score=123.45  Aligned_cols=187  Identities=13%  Similarity=0.001  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++..++..+......+.+..+ .+++.+.+|++..++++......++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence            333333333333333333333 4455567899998888888888999999999999999997 99999999988877777


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +++.+......  ++          .     .+..+...+....++.+....+..+....+..|.+|+++      |++.
T Consensus       364 ~~~~~~~~~~~--~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~  420 (481)
T TIGR00879       364 FVLGILGASFV--TG----------S-----SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKG  420 (481)
T ss_pred             HHHHHHhhccc--CC----------c-----ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHH
Confidence            66663211000  00          0     000022222222222222223344666778899999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      .++.+...++|+.++|.+.+++.++.+|++.|++.+++.+++.++.+...++
T Consensus       421 ~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence            9999999999999999999999998899999988877776666655444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.22  E-value=2.4e-10  Score=124.27  Aligned_cols=169  Identities=7%  Similarity=-0.024  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc-cchHHHHHHHHHHH--H
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIY--L  147 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~GR~~~~~~~~~~~--~  147 (605)
                      ++......++..++++....+++.|+.+ +|++..+++.+.+...++..++.+++|+++||. +++++...++..+.  .
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  321 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG  321 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence            5555666666777777788889999864 799999999999999999999999999999984 24444444333222  2


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.+++...                            .+.+.+++.+++.|++.+...++..+++.|.+|+++      +
T Consensus       322 l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~  367 (455)
T TIGR00892       322 LTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------F  367 (455)
T ss_pred             HHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------H
Confidence            333333332                            356677788889999999999999999999999888      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHH
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNM  274 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-gw~~~f~~~~~~~~i~~~  274 (605)
                      ++.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+
T Consensus       368 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       368 SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999999887 499999988876655544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.21  E-value=2.4e-10  Score=121.21  Aligned_cols=191  Identities=13%  Similarity=0.037  Sum_probs=146.0

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccch-HHH
Q 007405           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT  138 (605)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR-~~~  138 (605)
                      ....+.+||.+++..+..++..+.++.+.+..-+|+++ +.+.+.+..|+++++..++..++.|..|+.+.|. |. |+.
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            45667899999999999999998888777778889876 5777788889999999999999999999999996 74 677


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 007405          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (605)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~  218 (605)
                      ++.+.++.++|.++.......    ++                   ...+.++++|++.|+|.+.. ...=++++|....
T Consensus       105 li~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV  160 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence            778888888888887332221    11                   26788999999999997764 5677899998888


Q ss_pred             CCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h---------hchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----E---------HGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----~---------~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      ++      |.++++....+..+|..+||.+...+..    .         .-+..+-|+.+++.++.++++....++
T Consensus       161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            88      9999998777777777777776644321    1         113456677777766666666555554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=4e-10  Score=108.97  Aligned_cols=174  Identities=17%  Similarity=0.116  Sum_probs=137.5

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH
Q 007405           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (605)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~  140 (605)
                      ...+.....++|.+.++.++...+.+-+.+.-+.+.++.+|+|+..++.+.+...+..++.+|+.|.++|++ ||+-...
T Consensus       256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv  334 (459)
T KOG4686|consen  256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV  334 (459)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence            555555556799999999998888888888889999999999999999999999999999999999999998 9988777


Q ss_pred             HHHHHHHH-HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 007405          141 IFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (605)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~  219 (605)
                      .+..+..+ +-..++++                              .+.-+++..+.|+..........+.++-..|++
T Consensus       335 ~~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~  384 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE  384 (459)
T ss_pred             HHHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence            66554433 43444442                              233455667778887776666788888888988


Q ss_pred             CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHH
Q 007405          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGI  271 (605)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~~f~~~~~~~~i  271 (605)
                      +      .+++++..+...|+|-.+-|+++|.+.+.-|   |--.|++....+.+
T Consensus       385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL  433 (459)
T KOG4686|consen  385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMAL  433 (459)
T ss_pred             H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHH
Confidence            8      9999999999999999999999999988755   44455554444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.20  E-value=7.5e-10  Score=114.45  Aligned_cols=165  Identities=12%  Similarity=0.012  Sum_probs=113.0

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH
Q 007405           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (605)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~  140 (605)
                      .+.-+++|-.++...+..+.+.+. +.-......|....++ +...+-|...+|++.+......+-|+.|++ |-|.+.+
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~q-WI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l  113 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQ-WIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL  113 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcch-heeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence            345566665444444433333222 2223445667777788 666677899999999999999999999997 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 007405          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (605)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~  220 (605)
                      ++..+..+|..+=.++.. +...+.                   ......+.+..+.+...-.+...-+-+-+-+|++++
T Consensus       114 lgt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q  173 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ  173 (480)
T ss_pred             HHHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence            999999999888777632 111111                   111255667777776666655555566678999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                            |.++..+-.++..+|.++|.++...+..
T Consensus       174 ------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  174 ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             ------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence                  9999988777777777777666555543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.20  E-value=1.9e-10  Score=120.84  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH--HHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT--TIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~--~~~~  147 (605)
                      .++.+.+..++.....+++..+++.|+.+.+|.+..+++...+.+.++..++.++.|+++||..+||+......  ....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            35666666677777777888899999999999999999999999999999999999999998534444332221  1111


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.......       +.                   .+.....+..++.|+...+..+....+..|.+|++.      |
T Consensus       297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  344 (379)
T TIGR00881       297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A  344 (379)
T ss_pred             HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence            121111111       00                   233444555566676666666667788899999998      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f  262 (605)
                      ++..++++...++|..++|.+.|++.+..||++.|
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999999998754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=6.5e-10  Score=114.30  Aligned_cols=184  Identities=13%  Similarity=-0.013  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ..|.+.+..+...-++-++..+++.|++++++.++.+++.....+.+...+..++||+||||+ |.+|+.++.....+++
T Consensus       219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~  297 (417)
T COG2223         219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALA  297 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHH
Confidence            477888888888888888999999999999999999999999999999999999999999998 9999988888888887


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .....+....   ..        +          ..+...+++..+.+++..|.-...+..++...||.+       -+.
T Consensus       298 ~~~l~~~~~~---~~--------~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~  349 (417)
T COG2223         298 AALLSLFLTG---FG--------H----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA  349 (417)
T ss_pred             HHHHHccccc---cc--------c----------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence            7777664210   00        0          023344444444445555555556667777777764       578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      ..++.....++|+..-|...+...+.+| +...|++.....+++.++....+.+
T Consensus       350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888999999999999999999888 8899998888877777765554443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.18  E-value=1.7e-09  Score=111.30  Aligned_cols=161  Identities=11%  Similarity=0.008  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      ..+...+..++...+-.++..|++.|+.+.  +|+++.+++...+.+.++..++.+++++++||+ |+++++.++.++.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            345444444444444556778999999864  799999999999999999999999999999997 99999888887777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.++....                            .+.. ...+.++.|++.+...|...+...+.+|++.     ++
T Consensus       220 ~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~  265 (310)
T TIGR01272       220 LLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQ  265 (310)
T ss_pred             HHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hh
Confidence            766544432                            1111 2234557899999999999999988888653     13


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~  268 (605)
                      ++  ++. ....+|+.+.|.+.|++.|..|.+.+|++..++
T Consensus       266 as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       266 GS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             hH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            44  343 456689999999999999998988888755443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.16  E-value=1e-09  Score=120.01  Aligned_cols=173  Identities=10%  Similarity=-0.007  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHH-----HHH--HHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIA--IFT  143 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~-----~~~--~~~  143 (605)
                      .|.+.+..++.....+++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+ |||+     ...  +..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            34444444444555566777899999999999999999999999999999999999999997 8752     222  222


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      ++..++.++....                            .+....++..++.+++.+...+...++..+..| +.   
T Consensus       333 ~l~~i~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---  380 (476)
T PLN00028        333 TLGGVFCIWLGRA----------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS---  380 (476)
T ss_pred             HHHHHHHHHhccc----------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh---
Confidence            2211111211111                            233334444455566555555555566666544 45   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                         |+...++.+.+.++|+.++|.+.+ ..+..+|..+|++.+++.+++.++.++.+
T Consensus       381 ---~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 ---LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             ---chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence               888888877777777777766543 22334699999998887777766665544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.14  E-value=2.5e-09  Score=115.14  Aligned_cols=148  Identities=15%  Similarity=0.027  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007405           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (605)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (605)
                      ...+.+..+++.|+.+ .|.+..+.+...+...++..++.+++|+++||+ |||+++..+.++..++........     
T Consensus       245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~-----  317 (426)
T PRK12307        245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP-----  317 (426)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc-----
Confidence            3444566788888875 699999989888888999999999999999997 999999888877665544443220     


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHH
Q 007405          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (605)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~  242 (605)
                        +                   .....+.+..+..+++..+..+..+.++.|.+|++.      |++++++.+....+|+
T Consensus       318 --~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~  370 (426)
T PRK12307        318 --Q-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSG  370 (426)
T ss_pred             --c-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHH
Confidence              0                   122222222222333333444567788899999998      9999999999999999


Q ss_pred             HHHHHHHHHHHhhhchHHHHHH
Q 007405          243 IVAFTLVVYIQMEHGWGSAFGA  264 (605)
Q Consensus       243 ~i~p~i~~~l~~~~gw~~~f~~  264 (605)
                      .++|.+.+++.+..|+....++
T Consensus       371 ~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        371 TFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHHHHHHHcccHHHHHHH
Confidence            9999999999998886654333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.13  E-value=6.7e-09  Score=106.94  Aligned_cols=84  Identities=10%  Similarity=0.027  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 007405          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------  255 (605)
Q Consensus       185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~---------  255 (605)
                      .++..++++.++.|.|.+..++..++++++..++++      +.+.+++......+|..++|++++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            478899999999999999999999999999999988      99999999999999999999999987732         


Q ss_pred             -------hchHHHHHHHHHHHHHHHH
Q 007405          256 -------HGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       256 -------~gw~~~f~~~~~~~~i~~~  274 (605)
                             ..|+++|++.+.+..+..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3688898866555444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.13  E-value=9.9e-10  Score=117.91  Aligned_cols=164  Identities=8%  Similarity=-0.085  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH-HHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~-~~~~~~~~  147 (605)
                      .+|...+..++....++++.+++|.|+.+ ..+.+..+++.......++..++.+++|+++||+ |||+.. .+..++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            46677777788888888999999999977 3477888889888999999999999999999997 876643 33333333


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++..+ ....                           .+....+++..+.++|.....+.......|.+|+++      |
T Consensus       322 ~~~~~-~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~  367 (412)
T TIGR02332       322 AGWLL-ASAT---------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R  367 (412)
T ss_pred             HHHHH-HHhc---------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence            33211 1110                           111112222223333433333444455567888888      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHH
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA  268 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~  268 (605)
                      ++++++.+...++|+.++|.+.+.+.+..| |.+.|++.+++
T Consensus       368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999999875 99998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.13  E-value=3.2e-09  Score=115.88  Aligned_cols=178  Identities=17%  Similarity=0.081  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH--------
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI--------  139 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~--------  139 (605)
                      ++.+|...+..++....++.+.+++|.|+.+.+|.+..++++..++..++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            34578888888888889999999999999999999999999999999999999999999999986 543211        


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 007405          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (605)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~  219 (605)
                      ..+......+...+.....     .                    .+....++...+.+.+.++..+.......|..|. 
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-  392 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-
Confidence            1111111111111111100     0                    1223333344444555554455555555566654 


Q ss_pred             CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHHHHHHH
Q 007405          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~---gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .      ++...++.+...++|+.++|.+.+++.+..   +|...|++.++..+++.++...
T Consensus       393 ~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            5      899999999999999999999999987643   4888888888777776655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.13  E-value=1.8e-09  Score=112.98  Aligned_cols=153  Identities=9%  Similarity=0.005  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ++......++....+++.. .+.+.|.++.+|.+..+.+.+.....++..++.++.|+++||+ |||+.+..+.++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence            4445555555555655555 6677787777999999999999999999999999999999997 9999988887766666


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .....+..                           .+.+.+++..++.|++.+...+...+++.|.+|+++      |++
T Consensus       291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  337 (365)
T TIGR00900       291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR  337 (365)
T ss_pred             HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence            65555430                           125667777888999999999999999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g  257 (605)
                      .+++++...++|..++|.++|++.+..|
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       338 VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999988654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.12  E-value=5.3e-09  Score=111.03  Aligned_cols=165  Identities=7%  Similarity=-0.102  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++...+..++....++....+++.|+. +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+.++.++..++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence            555555555555666667778888985 5899999999888888888888899999999997 99999999988888777


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +.+...                            .+.+.+++..++.|++.+...+....+..+. ++++      +++.
T Consensus       285 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~  329 (382)
T PRK11128        285 GLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRL  329 (382)
T ss_pred             HHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHH
Confidence            666543                            4567777888889999888888888887776 4444      6777


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 007405          231 FNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (605)
Q Consensus       231 ~~~~~-~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~  273 (605)
                      .++++ ....+|..+||.++|++.+..|+. .|++.+++.++++
T Consensus       330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        330 QALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            78765 456788899999999999998874 5665555544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=7.1e-09  Score=110.96  Aligned_cols=171  Identities=11%  Similarity=-0.102  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++...+...+.....+......|.|+.+.+|+++.+.++......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44444444444455555666678888889999999988887777778889999999999997 99999999888877777


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      .+..+....    .+                   .+...++++.++.|+|.+...+......... ++++      |++.
T Consensus       296 ~~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~  345 (406)
T PRK15402        296 LLAALATVI----SS-------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV  345 (406)
T ss_pred             HHHHHHHHc----cc-------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence            776654210    00                   2445566777888998887766665555433 3355      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~  272 (605)
                      .+.+++...+|..+|+.+++++.+..++....+..++..++.
T Consensus       346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999999999999999999988877665555544444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.12  E-value=5.7e-09  Score=110.81  Aligned_cols=172  Identities=10%  Similarity=0.005  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+..+...++.....+....++++|+.+.+|++..+.+...+.+.++..++.++.|+++||+ |+|+.+.++.++..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            34444444444445555566778899888999999999999999999999999999999997 99999998888777776


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhh-hhccCCCCCchhhhhhhH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDR  229 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~d~~~~~~~~~~~~r~~  229 (605)
                      ++.....                           .+.+..++..++.+++.++..+..... ..+..+++.      ++.
T Consensus       280 ~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~  326 (382)
T PRK10091        280 LMLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGA  326 (382)
T ss_pred             HHHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHH
Confidence            5544321                           122334444455556554444433333 334333333      443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      .  ..+....+|..+||.++|++.+. .+|++.+.+.++..++.+.....
T Consensus       327 ~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        327 A--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             H--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            3  33556789999999999999985 67999998887766555554443

>PRK10504 putative transporter; Provisional

Probab=99.11  E-value=4.5e-09  Score=114.81  Aligned_cols=156  Identities=10%  Similarity=-0.026  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      +...+...++...++.......+.|++..+|.++.++++......++..++.++.|+++||+ |||+++.++.++..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            44455556666666555556677788888999999999888888888888889999999997 99999998888777776


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      .++.+...      .                   .+...+.+..++.|++.+...+....+..+.+|++.      ++..
T Consensus       342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  390 (471)
T PRK10504        342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG  390 (471)
T ss_pred             HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence            65554210      0                   223334455667788888888888899999999888      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      ++++++...+|..+|+.+++.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999988776654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.09  E-value=1.5e-08  Score=104.33  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             HHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccC
Q 007405          481 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  537 (605)
Q Consensus       481 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~  537 (605)
                      ++.|...+-.....=++..+.+|++..+...|++++....++++||.+++++.+.++
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            456777888888999999999999999999999999999999999999999999887

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.08  E-value=8.5e-09  Score=109.75  Aligned_cols=174  Identities=7%  Similarity=-0.084  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .+..+...++...+......+.+.|+.+ .|+++++.+++...... ...++.+++|++.||+ |+|+++.++.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            3444445555566666667778888865 79999999988887754 5667789999999997 9999998877665333


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~r~  228 (605)
                      ......... ... .                    .+...++....+.+++.+...+...+...+..++ +.      ++
T Consensus       288 ~~~~~~~~~-~~~-~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g  339 (390)
T TIGR02718       288 ALLWFAQAA-FWL-A--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG  339 (390)
T ss_pred             HHHHHHHHH-ccc-C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence            222221110 000 0                    1223333444455666676667777777777665 66      89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~  274 (605)
                      +.+++.+...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus       340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999898887766555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.07  E-value=5e-09  Score=111.75  Aligned_cols=170  Identities=12%  Similarity=0.075  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      +......++....+.....+.+.|+.+.+   +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..+
T Consensus       218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l  296 (396)
T TIGR00882       218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Confidence            33333344444444445556788887766   44556677778888888888889999999997 999999998888887


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      +..+...+                            .+.+.+++..++.|++..........+..+.++++.      ++
T Consensus       297 ~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a  342 (396)
T TIGR00882       297 RIIGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA  342 (396)
T ss_pred             HHHHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence            77665543                            355666777888888876665566667777778777      77


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       229 ~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      +..+. ++....+|..++|.++|++.+..||+..|.+.+++.++..++.
T Consensus       343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            76666 5678999999999999999999999999998887766655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.05  E-value=4.7e-09  Score=114.93  Aligned_cols=155  Identities=13%  Similarity=0.098  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++...+..++..+.+++...++|.|+++.+|.++.++++......++..++.++.|++.||+ |||+++.++.++..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence            44455666667777788888899999999999999999999999999999999999999997 99999999888887777


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      .+..+...     ++                   .+...++...++.|+|.+...+.......+.+|+++      |+++
T Consensus       336 ~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~  385 (485)
T TIGR00711       336 YWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG  385 (485)
T ss_pred             HHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence            66653210     11                   234555666788899998887777777788889888      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEH  256 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~  256 (605)
                      .++++...++|+.+|+.+.+.+.++.
T Consensus       386 ~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       386 SSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.05  E-value=5.2e-09  Score=110.86  Aligned_cols=148  Identities=14%  Similarity=0.032  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      +..+...+..++....++.+..+++ ++.+++|.+..+++...+...++..++.+++|+++||+ |||+.+....+...+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            3445555555666677777777777 77788999999999999999999999999999999997 998554444333332


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      +.++....                            .+...+++..++.|++.++..+...++.+|.+|+++      |+
T Consensus       328 ~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  373 (398)
T TIGR00895       328 AVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RA  373 (398)
T ss_pred             HHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HH
Confidence            22222211                            234556667788899999999999999999999998      99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYI  252 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l  252 (605)
                      +.+++.+....+|..++|.++|++
T Consensus       374 ~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       374 TGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999999875

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.04  E-value=1e-07  Score=102.53  Aligned_cols=172  Identities=14%  Similarity=0.078  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHhCCChhHH-HHHHHHH----HHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFG---LSVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        75 ~~~~~~~~~~~~~---~~~~l~~yl~~~~~~s~~~~-~~~~~~~----~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      ....++..++.+.   ...+...+.....+.+.... +......    .+...+..++-|.++||| |||..+...++..
T Consensus        24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~  102 (463)
T KOG2816|consen   24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGT  102 (463)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHH
Confidence            3333444444333   33566666666555443322 2333333    467788889999999997 9999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHH--hhcccchhhhhhhhccCCCCCchhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      .+..+...+.                             . +++++   +.++  +.+.......++++|....++    
T Consensus       103 ~l~~~~~~~~-----------------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~----  145 (463)
T KOG2816|consen  103 ILPALCLLFQ-----------------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE----  145 (463)
T ss_pred             HHhHHHHHHH-----------------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH----
Confidence            8777776653                             2 22322   3332  234455777888999999988    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  286 (605)
                        |...+++.+.+...+..++|.+++++....|...+|++..+..++..+......++....
T Consensus       146 --R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~  205 (463)
T KOG2816|consen  146 --RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE  205 (463)
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc
Confidence              999999999999999999999999999999999999999988888877766666665443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.04  E-value=7.8e-09  Score=111.61  Aligned_cols=160  Identities=16%  Similarity=0.062  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++..++..++...+++......+.|++..++ +....++......++..++.++.|+++||+ |||+++.++.++..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            35556666666667666655555556555566 455667777778888999999999999997 9999999998888877


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~r~  228 (605)
                      .+...+..                           .+...+++..++.|++.+...+...++++|..|.++... ...++
T Consensus       301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  353 (437)
T TIGR00792       301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG  353 (437)
T ss_pred             HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence            76665431                           234555666678889999888999999999877432110 11278


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      ..++++++...+|..+++.+.+++.+..||
T Consensus       354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999999887666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.04  E-value=5.6e-09  Score=115.13  Aligned_cols=176  Identities=15%  Similarity=0.089  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHhhhHHHHHhhhccchHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~  141 (605)
                      +....++..+.+|++..++|.+++ ..|++..+++.            ......++..++.+++++++||+ |||+++++
T Consensus       293 ~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~  370 (502)
T TIGR00887       293 TAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHH
Confidence            334445556677888888888885 67876543221            12223345556778899999997 99999988


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 007405          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~  221 (605)
                      +.++..++..+..+....    .+                   .+ ..+....+...++..+..+....+.+|.+|++. 
T Consensus       371 ~~~~~~~~~~~l~~~~~~----~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~-  425 (502)
T TIGR00887       371 GFFILTVLFFVLGFAYNH----LS-------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY-  425 (502)
T ss_pred             HHHHHHHHHHHHHHHHHh----cc-------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH-
Confidence            887777766655543110    00                   11 111111112222223344566777899999999 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~----------~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                           |+++.++.+....+|+.++|.+.+++.+.          .++...|++.++..+++.+.. +..++
T Consensus       426 -----R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE  490 (502)
T TIGR00887       426 -----RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE  490 (502)
T ss_pred             -----HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence                 99999999999999999999999998874          234456666666655554433 33344

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.03  E-value=1.6e-08  Score=110.63  Aligned_cols=157  Identities=10%  Similarity=-0.038  Sum_probs=111.2

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 007405           94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (605)
Q Consensus        94 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  173 (605)
                      +++.+.+|.+.....+......+...++.+++|+++||+ |||++++++.++..++.+.+......    +.        
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~----~~--------  361 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYT----QA--------  361 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhc----Cc--------
Confidence            344567888877777777777788889999999999997 99999999999888887776543110    00        


Q ss_pred             cccCCCCCccchhHHHHHHHHHHHHHhhcc-cchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 007405          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--  250 (605)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~--  250 (605)
                                 .. .....+.++.+++.+. ..++...+++|.+|++.      |++++++.+...++|..+++.+.+  
T Consensus       362 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        362 -----------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             -----------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                       11 1222333444444443 34677899999999988      999999988888888887755544  


Q ss_pred             ----HHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       251 ----~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                          ++.+..+|++.|++.++..+++.++.+...+
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             HhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence                4456778888888877766666555444443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.00  E-value=2.8e-08  Score=106.61  Aligned_cols=183  Identities=14%  Similarity=0.014  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .|...+..++....|.++..++|.|+++.+.  .........+..+...+..|++|+|+||+ |++|++.++.++..++.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence            6777777788777777788889999988663  33333334456678889999999999997 99999999988777766


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc---------
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK---------  221 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~---------  221 (605)
                      ....+..      |.                ....++..+.+..+...++.|.-.+.+..++.+.||++..         
T Consensus       331 ~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~  388 (462)
T PRK15034        331 ALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS  388 (462)
T ss_pred             HHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence            5443321      10                0003455566655555566666666677777777774100         


Q ss_pred             ------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHH
Q 007405          222 ------DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       222 ------~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (605)
                            ..++.-+...++......+|+.+-|.+.+...+.+| +...|+...+..++++++.++
T Consensus       389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence                  011125666777777888888888988787777655 788888777766655555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.00  E-value=7.7e-09  Score=106.55  Aligned_cols=172  Identities=13%  Similarity=0.092  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .+.+.++..++.+=+..++.+....|...++|++..+...+.....+..+++++++|+|.||+ |-|+++.++++++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            455566666666666677888899999999999999999999999999999999999999997 9999999999888776


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+...+.                            .....+++.-++.|+..|+.++..=++.++..|+++      -++
T Consensus       332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~  377 (438)
T COG2270         332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR  377 (438)
T ss_pred             HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence            6655543                            123344445568899999999999999999999999      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~  276 (605)
                      +|++|+.....++.+||.+.+.+.+.+| -|..+....++.+++++++
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            9999999999999999999999988776 6767666666656665544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.00  E-value=5.1e-08  Score=104.01  Aligned_cols=165  Identities=9%  Similarity=-0.040  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH-
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG-  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~-  149 (605)
                      ++...+..++.....++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+..+ .+.++..+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~-~~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALA-GAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHH-HHHHHHHHHH
Confidence            44444444555555566666765555678899999999999999999999999999999995 554434 343333333 


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .++....                            .+.+.+.+..++.|++.+...+..++++.+..|+ +      +++
T Consensus       296 ~~l~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~  340 (394)
T PRK10213        296 LVLTLWG----------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEK  340 (394)
T ss_pred             HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHH
Confidence            3332222                            2445666677888999999888888888888774 3      455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~  272 (605)
                      ..+++....++|..+||.++|++.+..|++..+...+++.++.
T Consensus       341 ~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        341 AGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            5566666778999999999999999989888887766554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=9e-09  Score=113.24  Aligned_cols=153  Identities=13%  Similarity=0.055  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      +....+..++....+++...+++.|++..+|.++.+++.....+.++..++.+++|++.||+ |||+.+..+.++..++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF  339 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            44555666667777778888899999999999999999999999999999999999999997 99999988888887777


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +++.....      .                   .+.+...+..++.|+|.|...+.......+..|+++      ++.+
T Consensus       340 ~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~  388 (495)
T PRK14995        340 YGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAA  388 (495)
T ss_pred             HHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchH
Confidence            66544210      0                   233445566788899999988888888888899888      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQME  255 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~  255 (605)
                      .+++++..++|..+|+.+.+.+.+.
T Consensus       389 ~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        389 GAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.00  E-value=2.7e-08  Score=109.17  Aligned_cols=169  Identities=10%  Similarity=0.045  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~  153 (605)
                      ++...++..+....+...+|.+..+.+|.+....|++.+.+.++..++.++.+++.+|+ ++++.+..+.+++.++.+.+
T Consensus       223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL  301 (524)
T ss_pred             HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence            33334444444445556688888999999999999999999999999999999999996 99999999988888887777


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      +++                            .+.+..+++.++.|++.........+.+-+..|++.      |++.+++
T Consensus       302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si  347 (524)
T PF05977_consen  302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI  347 (524)
T ss_pred             hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence            775                            466777778888999988888888899999999999      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 007405          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (605)
                      +.+....+..+|.++.|.+.+.+|-+..+.+.++..+++.++..
T Consensus       348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888877766655555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=4.4e-08  Score=104.80  Aligned_cols=153  Identities=14%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (605)
                      .+.+.|+.+++|+++.+.+++..... ++..++.+++|+++||+ |||+.+.++.++..+..+.+......    +    
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~----  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P----  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C----
Confidence            34456777889999999998876654 46788899999999997 99998887777666554443321110    0    


Q ss_pred             ccccccccCCCCCccchhHHHHHHHH----HHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHH
Q 007405          169 CDRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (605)
Q Consensus       169 c~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i  244 (605)
                                      .+.+.++++.    +..|++.+...+....++.+.+|.++      +    +++....++|..+
T Consensus       301 ----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~  354 (402)
T PRK11902        301 ----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVY  354 (402)
T ss_pred             ----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHH
Confidence                            1233333333    34556666666777777777777544      4    3333344567766


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 007405          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       245 ~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (605)
                      ++.++|++.+..||+..|.+.+++.++++++..
T Consensus       355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            666899999999999999988877777655543

>TIGR00896 CynX cyanate transporter

Probab=98.99  E-value=2e-08  Score=105.42  Aligned_cols=151  Identities=15%  Similarity=0.059  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+...+..++....++++..++|.|+++ .|.+..+.+...+.+.++..++.++.|+++||+-+||+++.++.++..++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  277 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL  277 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            4555555556667777888899999875 799999999999999999999999999999996246667777777777776


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR  229 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~r~~  229 (605)
                      +.+.+..                           .+. .. ...++.|++.+...+...+...+..++ ++      ++.
T Consensus       278 ~~~~~~~---------------------------~~~-~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~  322 (355)
T TIGR00896       278 CGLLFAP---------------------------MHG-LW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAA  322 (355)
T ss_pred             HHHHHhh---------------------------hhH-HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHH
Confidence            6665431                           111 11 134577999988888877777665554 33      678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g  257 (605)
                      .+++.+...+++..++|.+.|++.+.+|
T Consensus       323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       323 LSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888888999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=2.3e-07  Score=102.79  Aligned_cols=211  Identities=14%  Similarity=0.100  Sum_probs=152.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +.+.++.++....+......+......+-+.+.++++.++.+++.+.+-++..+...+-.+.+-|. =|-+.+-++.+++
T Consensus        94 ~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m  172 (735)
T KOG3626|consen   94 NIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLM  172 (735)
T ss_pred             CcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHH
Confidence            334444444444444444447777788888999999999999999999999999999999999986 7778888999999


Q ss_pred             HHHHHHHHHhhhcccc-------------CC----CCCccccccc----ccCCCC--Cccch-hHHHHHHHHHHHHHhhc
Q 007405          147 LAGLTGITLCATMKVF-------------MP----NQDNCDRISQ----LLGSCE--PAKSW-QMLYLYTVLYITGFGAA  202 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~-------------~~----~~~~c~~~~~----~~~~~~--~~~~~-~~~~~~~~~~l~g~g~g  202 (605)
                      .+|.+++++-.+...-             .+    ..+.|++..+    ..++|+  ..... -+.+++++.++.|+|..
T Consensus       173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T  252 (735)
T KOG3626|consen  173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT  252 (735)
T ss_pred             HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence            9999998875322100             00    0011121111    122332  12212 23467788899999999


Q ss_pred             ccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hhc-hHHHHH
Q 007405          203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFG  263 (605)
Q Consensus       203 ~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~------------------~~g-w~~~f~  263 (605)
                      .+++...+++=|....++      -...+++++....+|+++|.++++++..                  +.| |+..|+
T Consensus       253 pi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL  326 (735)
T KOG3626|consen  253 PIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL  326 (735)
T ss_pred             CCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence            999999999999888887      7889999999999999999999987642                  134 888999


Q ss_pred             HHHHHHHHHHHHHHHhccccc
Q 007405          264 ALAIAMGISNMLFFIGTPLYR  284 (605)
Q Consensus       264 ~~~~~~~i~~~~~~~~~~~~~  284 (605)
                      +.+.+.++..+.++++.++.+
T Consensus       327 i~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  327 ICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHHhCcccCc
Confidence            999888888777766555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=1.8e-08  Score=122.30  Aligned_cols=163  Identities=10%  Similarity=-0.018  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence            34444444444455556677889999999999999 999999999999999999999999997 9999888888877777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+++.+.                            .+.+.++++.++.|++.++..+...+++.+.+|++.      |++
T Consensus       313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~  358 (1146)
T PRK08633        313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK  358 (1146)
T ss_pred             HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence            7666654                            345666677788899999988889999999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIA  268 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~~~~~~  268 (605)
                      ++++.++..++|..+++.+++.+... +++...|++.+.+
T Consensus       359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999998888777766542 3455555554443

>PRK10133 L-fucose transporter; Provisional

Probab=98.97  E-value=2.9e-08  Score=107.40  Aligned_cols=162  Identities=10%  Similarity=0.014  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~  152 (605)
                      ..+..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ |||+++..+.++..++...
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence            34444555566666677888896 567899999999999999999999999999999997 9999998887776655544


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHH
Q 007405          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (605)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  232 (605)
                      ..+.                            .+. ..+....+.|++.+...|...+...+.++++.       +.+.+
T Consensus       342 ~~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~  385 (438)
T PRK10133        342 SAFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS  385 (438)
T ss_pred             HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence            4432                            111 22345677899999999999999999987643       33333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHH
Q 007405          233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN  273 (605)
Q Consensus       233 ~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~  273 (605)
                      +... ..+|+.++|.+.|++.+..| -+..|++..+..++..
T Consensus       386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            3333 33678888899999999887 6778876655544333

>PRK10054 putative transporter; Provisional

Probab=98.97  E-value=1.5e-08  Score=108.21  Aligned_cols=172  Identities=12%  Similarity=-0.006  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      ++...+..++..+.+.....+.+.|+...  .+.+....+.....+.+......++.|++.||+ |||+.+.++.++..+
T Consensus       208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~  286 (395)
T PRK10054        208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI  286 (395)
T ss_pred             ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence            33444445555555445555667777544  344555566777777666667778889999997 999999999888887


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      +.....+..                           .+.+.+.++.++.++|.+...|...+.+.+..|++.      |+
T Consensus       287 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~  333 (395)
T PRK10054        287 GLVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KA  333 (395)
T ss_pred             HHHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ce
Confidence            776665431                           245556667788899988888888889999999888      88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (605)
                      +.++... ...+|..+||.++|++.|+.|....|++.+.+..++.++..
T Consensus       334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            8877644 56689999999999999999988888776665555444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.97  E-value=2.3e-08  Score=106.94  Aligned_cols=154  Identities=11%  Similarity=0.019  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      ....++|.|+++..+ ++.+.++..+...++...+....+++.||.++.++.+..+.++..++..++...          
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence            345567888877666 667777777776665554444445665543376777777777777776666554          


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .+...+++...+.+++.+...|...+++.|..|+++      |++.+++++...++|..+||
T Consensus       295 ------------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~  350 (400)
T PRK11646        295 ------------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGY  350 (400)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcc
Confidence                              244455556677788888888888999999999998      99999999999999999999


Q ss_pred             HHHHHHHhhhc----hHHHHHHHHHHHHHHHHH
Q 007405          247 TLVVYIQMEHG----WGSAFGALAIAMGISNML  275 (605)
Q Consensus       247 ~i~~~l~~~~g----w~~~f~~~~~~~~i~~~~  275 (605)
                      .++|++.+..+    ....+++.++..++..+.
T Consensus       351 ~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        351 IGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             cchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            99999988642    244555444444444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.96  E-value=6.2e-08  Score=102.41  Aligned_cols=160  Identities=13%  Similarity=0.079  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~  151 (605)
                      +...+...+....++....+.+.|+.+++|.++.+.+.+.....++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~  287 (385)
T TIGR00710       209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAV  287 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence            3344444444555566777788899889999999999999999999999999999999997 999999888877777766


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (605)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~  231 (605)
                      ++......    +.                   .....+++..++.|++.+...+.......|.+| ++      |++..
T Consensus       288 ~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~  337 (385)
T TIGR00710       288 LLEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTAS  337 (385)
T ss_pred             HHHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHH
Confidence            66543210    00                   123344555667888888888888888888876 45      78888


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHH
Q 007405          232 NFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFG  263 (605)
Q Consensus       232 ~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~  263 (605)
                      ++++..... |+..+|. .+.+.+..+|...+.
T Consensus       338 ~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccccChHHHHHH
Confidence            887776544 5555554 445555444544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.94  E-value=1.5e-07  Score=101.50  Aligned_cols=164  Identities=14%  Similarity=0.038  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc--cc--hHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (605)
                      .....|+++++|+++++.....+...+-.. .-|+.|.++|.+  +|  ||+-++++.++..++...+++...   .   
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~---   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S---   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c---
Confidence            345668899999999998876666555444 456789999986  45  555566677666555555544311   0   


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 007405          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (605)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~  245 (605)
                                        ..+.....+..++..+|.+....+..++..|....+...    |+...++.+....+|+.++
T Consensus        83 ------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~  140 (433)
T PF03092_consen   83 ------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVG  140 (433)
T ss_pred             ------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHH
Confidence                              023344555667788888888899999999988655422    7888889899999999999


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       246 p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      ..++|.+.+..++++.|.+.+++..+..+..+...++
T Consensus       141 ~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  141 SLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999988877766665555554444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.91  E-value=7.4e-08  Score=101.72  Aligned_cols=165  Identities=10%  Similarity=-0.042  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchH---HHHHH-HHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTTI  145 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~---~~~~~-~~~~  145 (605)
                      .+|.+.+..++....+|++..|+|.|+++ .|++.. ++....+..+...+   ..++++||. .||   +.... ..++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~---g~~~~~d~~-~r~~~r~~~~~~~~~~  266 (368)
T TIGR00903       193 DLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLI---GVAVIPDRV-ARAGLRSIYIRAAALL  266 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHH---HHHHhhHHh-hhhhhHHHHHHHHHHH
Confidence            46788888899999999999999999964 678764 45444444444443   357888886 543   33222 3333


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.......                            .+....++...+.+++.....+...++.+|.+|++.     
T Consensus       267 ~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-----  313 (368)
T TIGR00903       267 IAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL-----  313 (368)
T ss_pred             HHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh-----
Confidence            33222222221                            122233334455666677777778899999999999     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                       |+++.++.+...++|+.++|.+.+.+..  |-...|.+.++..+++.+..
T Consensus       314 -rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       314 -HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             -cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999887773  55666766666655555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.90  E-value=2e-08  Score=100.98  Aligned_cols=174  Identities=10%  Similarity=0.062  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCChhHHH--HHHHHHHHHHHHhhhHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNM-----------------VTFMFYVMHKSFADSS--NAVNNFLGISQASSVLGGFL  128 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l-----------------~~yl~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~G~l  128 (605)
                      ++..+....+.|.+.+.||++.-..                 +.++....+-......  .=+.+..+...-+.++.+++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            3456677788888899999875422                 2222222221211111  11233456677888999999


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhh
Q 007405          129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV  208 (605)
Q Consensus       129 aD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~  208 (605)
                      .||+ |||+++..+.+++.++++++..+-.                       ++ .-..+++.+|+++..    ...+.
T Consensus       405 verl-GRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~arafisg----~fqva  455 (528)
T KOG0253|consen  405 VERL-GRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAFISG----AFQVA  455 (528)
T ss_pred             HHHh-cchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHHHhc----hheEE
Confidence            9996 9999999999999998888776411                       11 223455566765543    34567


Q ss_pred             hhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       209 ~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +.+..|.+|+..      |+++.|.......+|+++.|.++  +...-+-..+..+.+.+.+++.++..+
T Consensus       456 YvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  456 YVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             EEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhee
Confidence            789999999999      99999999999999999999998  332223333444455555555554443

>PRK09848 glucuronide transporter; Provisional

Probab=98.89  E-value=3.3e-08  Score=107.39  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++.
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~  308 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGY  308 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            55566666666676666666677788888888776655555544566778899999999997 99999999998888887


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhhH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDR  229 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~r~~  229 (605)
                      +.+.+.       +.                   .+.+.+++..++.|+|.+...+...++.+|..|.++.++ ...++.
T Consensus       309 ~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~  362 (448)
T PRK09848        309 LLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL  362 (448)
T ss_pred             HHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence            766543       11                   345566677788999999999999999999988654211 112588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      .++++++...+|..+|+.+.+.+.+..||
T Consensus       363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88899999999999999999887665554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.3e-07  Score=101.38  Aligned_cols=196  Identities=14%  Similarity=0.069  Sum_probs=133.0

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~  143 (605)
                      ++..++..+..+...++..+.......+..+.+-+.-|++..++.++.........+..+++.++.||+ |||+.++++.
T Consensus       264 ~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~  342 (485)
T KOG0569|consen  264 NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISL  342 (485)
T ss_pred             CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHH
Confidence            344455566777777777666544455566677778899999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhc-ccchhhhhhhhccCCCCCch
Q 007405          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKD  222 (605)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~d~~~~~~~~  222 (605)
                      .+..+..+++...........+                   .-....+++.++..++.+ +..|...-+.+|.||++.  
T Consensus       343 ~~~~~~~~~~~~~~~l~~~~~~-------------------~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--  401 (485)
T KOG0569|consen  343 SLMAVALLLMSIALFLSNSFGS-------------------WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--  401 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc--
Confidence            9888888777665332100000                   001112333333333333 235677788899999999  


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007405          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (605)
Q Consensus       223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  286 (605)
                          |..++++.....-+...+-.+.--.+.+..|- ..|.+..+..++..+..+...|+.|.+
T Consensus       402 ----R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  402 ----RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence                99999987776666555555555556666664 556666666666666666666666544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.87  E-value=4.7e-08  Score=118.61  Aligned_cols=183  Identities=6%  Similarity=-0.175  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++...+..++..+.++++.+++|.|+.+.+|.+..+++++.+.+.++..++.++.|+++|++ ++++.+.++.++..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  305 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFG  305 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHH
Confidence            55555655666666677788999999999999999999999999999999999999999986 76666665555555444


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +.+.+.... ...+....+      ...+... ..+.+.++++.++.|++.+...+...+++.+.+|++.      |++.
T Consensus       306 ~~l~~~~~~-~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v  371 (1140)
T PRK06814        306 LDLAFASSS-VPAEPAQLK------SILVFLS-KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARV  371 (1140)
T ss_pred             HHHHhcccc-ccccccccc------chhhhhc-ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceee
Confidence            433331000 000000000      0000000 0234566677788899999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~~~~~~  268 (605)
                      +++.++...+|..+++++++.+.+ ..++...|++.+++
T Consensus       372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999999998874 34566665554443

>TIGR00898 2A0119 cation transport protein

Probab=98.87  E-value=4.4e-08  Score=108.04  Aligned_cols=131  Identities=14%  Similarity=0.047  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH
Q 007405          112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (605)
Q Consensus       112 ~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  191 (605)
                      ....+...++.+++++++||+ |||+++.++.++..++.+++.+...                          ......+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~  414 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRT  414 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHH
Confidence            344556677888999999997 9999999998887777766655311                          1123333


Q ss_pred             HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 007405          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (605)
Q Consensus       192 ~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i  271 (605)
                      +..++.+++.++..+....+.+|.+|++.      |++++++.+....+|+.++|.+.+ +. ..++..++++.++..++
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~  486 (505)
T TIGR00898       415 ALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALL  486 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHH
Confidence            44455566666677888899999999998      999999999999999999999988 43 34566677776666655


Q ss_pred             HHHHHH
Q 007405          272 SNMLFF  277 (605)
Q Consensus       272 ~~~~~~  277 (605)
                      +.++.+
T Consensus       487 ~~~~~~  492 (505)
T TIGR00898       487 AGILTL  492 (505)
T ss_pred             HHHHHH
Confidence            544443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.84  E-value=2.4e-07  Score=98.86  Aligned_cols=158  Identities=6%  Similarity=-0.072  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007405           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (605)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (605)
                      .........++.|+++.+|.++.+.+.+.....++..++.++.+++.||. ++++++..+..+ .+....+...      
T Consensus       219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------  290 (393)
T PRK11195        219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH------
Confidence            33344555667888889999999999999999999999999999999997 988888777533 2232222222      


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHH
Q 007405          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (605)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~  242 (605)
                                            .+.+...+..++.|++.+...+...+.+.+..|++.     ++++.+++.++..++|.
T Consensus       291 ----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~  343 (393)
T PRK11195        291 ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAM  343 (393)
T ss_pred             ----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHH
Confidence                                  344555566678899988888888888877644432     16889999999999999


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       243 ~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      .++..+.+.+ +..|-++.+++.++..++.+.+.
T Consensus       344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence            9999888855 56676666666555544444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.84  E-value=1.3e-07  Score=102.02  Aligned_cols=161  Identities=14%  Similarity=0.110  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .....++..++..++........+.|.+..+|.+ ...+....+..+...++.++.++++||+ |+|+++.++.++..++
T Consensus       226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALG  303 (428)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHH
Confidence            4667777778877887777777888888888877 4566777788889999999999999997 9999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~r~  228 (605)
                      .+...+...                          .+.+.+++..++.|++.+...+...++++|..+.++.++ +...+
T Consensus       304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g  357 (428)
T PF13347_consen  304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG  357 (428)
T ss_pred             HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence            888777521                          367788888899999999999999999999998654221 12257


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      ..++.+.+...++.++++.+.+.+.+..|+
T Consensus       358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            788889999999999999999988765554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.81  E-value=4.5e-08  Score=106.89  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccc--hHHHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--R~~~~~~~~~~~  146 (605)
                      +.++.......+..++++.-..+++.|.. ..+.+..+++.++++..+...++.++.|+++|+. .  ++.+..+++++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45777778888888888888888898887 8999999999999999999999999999999986 6  344444555555


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .++.+.++++                            .+.+.++..-++.|+..|......+..+.|..+.++      
T Consensus       376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------  421 (509)
T KOG2504|consen  376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------  421 (509)
T ss_pred             HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence            5555455544                            456777777788999999998888889999999999      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhc
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      -..++++......++..+||.++|++.|.+| |...|+..++..+++.++++...
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999888 99999999988887776655443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.81  E-value=1.1e-07  Score=99.74  Aligned_cols=145  Identities=10%  Similarity=0.033  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      ..+..++..++...+++...++++.|+.+ +|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            35556666666778888888999999987 9999999988777655 56788999999999997 999999888887776


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      +.....+....  ...+            +   .+..+.+.+..+.++.+++.+...+...++..|.+|++.      |+
T Consensus       288 ~~~~~~~~~~~--~~~~------------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g  344 (356)
T TIGR00901       288 TNAGFVWLASN--GHHD------------G---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA  344 (356)
T ss_pred             HHHHHHHHHhc--Cccc------------c---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence            65544432110  0000            0   000134556667778899999999999999999999999      99


Q ss_pred             HHHHHHHHHHH
Q 007405          229 RFFNFFYLSVT  239 (605)
Q Consensus       229 ~~~~~~~~~~~  239 (605)
                      +.+++++...+
T Consensus       345 ~~~g~~~~~~~  355 (356)
T TIGR00901       345 TQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHh
Confidence            99999777654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.79  E-value=2.9e-08  Score=103.26  Aligned_cols=142  Identities=19%  Similarity=0.240  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (605)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~  151 (605)
                      ..+...++..+.++....+++.|+.+.+|.+ ..+.+...+...+...++.++.|+++||+ |+++...+......++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~  288 (352)
T PF07690_consen  210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL  288 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence            3444445555566678888999999999999 78999999999999999999999999997 988888887777776666


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (605)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~  231 (605)
                      .+.+....                         .+....++..++.|++.+...+...++..|.+|+++      |++..
T Consensus       289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  337 (352)
T PF07690_consen  289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF  337 (352)
T ss_dssp             HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred             HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            65543210                         244556667788999999999999999999999998      99999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007405          232 NFFYLSVTVGAIVAF  246 (605)
Q Consensus       232 ~~~~~~~~ig~~i~p  246 (605)
                      ++.+...++|..+||
T Consensus       338 g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  338 GLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.77  E-value=1.7e-06  Score=88.23  Aligned_cols=157  Identities=17%  Similarity=0.120  Sum_probs=110.6

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccc
Q 007405           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ  174 (605)
Q Consensus        95 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  174 (605)
                      .+-+.+|++..+.+.+.....+...+..++.|.++||+ |||+..++..+++.++.+.--.                   
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-------------------  118 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-------------------  118 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-------------------
Confidence            34467999999999888888888999999999999997 9999999999998887754332                   


Q ss_pred             ccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 007405          175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQ  253 (605)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~  253 (605)
                                .+...++++|++-|++......+..+.......++.-+ ..-.+.-++... +...+-++++..++.++.
T Consensus       119 ----------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~  187 (354)
T PF05631_consen  119 ----------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLA  187 (354)
T ss_pred             ----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence                      47889999999999999998888887764333322211 001333343333 223344455555666777


Q ss_pred             hhhch--HHHHHHHHHHHHHHHHHHHHhccc
Q 007405          254 MEHGW--GSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       254 ~~~gw--~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      +..+.  ..+|....++.+++.++....+++
T Consensus       188 ~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  188 DWFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            76654  678888877777766665544443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.76  E-value=7.4e-07  Score=90.20  Aligned_cols=164  Identities=15%  Similarity=0.121  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .|.+.+..-++++.+|.+..|+|.++. +.|+|..++++.++...+......+.+-.+++|.--+|+.......++.+|.
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~  288 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL  288 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            566666677788999999999999985 6799999999999999999999999999999987678888888888999998


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      ..+.+.       |.                   +.+ .+.  .+++|+|.|+..+..-.++.+..++.+.     -++.
T Consensus       289 ~G~~~~-------P~-------------------~~~-~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~L  334 (395)
T COG2807         289 VGLLLA-------PG-------------------QLP-ILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAAL  334 (395)
T ss_pred             HHHHHh-------hh-------------------hHH-HHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHH
Confidence            888765       11                   222 222  4789999999999999999988765441     3444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM  269 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~  269 (605)
                      .++.+-...+=+.+||.+.|++.|..| |....+..+...
T Consensus       335 SgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         335 SGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             HHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            445555556667889999999999876 887766554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.75  E-value=9.3e-07  Score=93.36  Aligned_cols=147  Identities=10%  Similarity=-0.089  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~  151 (605)
                      +...+..++.....+....+.+.|+.+.+|+++.+.+.......++..++.+++|+++||+ |||+++.++.++..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3344444454555556666777888888999999999999999999999999999999997 999999988876544333


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (605)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~  231 (605)
                      ........    +                    .+.+.+.++..+.+.+.+...+.......|..| +.      +++..
T Consensus       276 ~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  324 (377)
T PRK11102        276 WLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS  324 (377)
T ss_pred             HHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence            32221100    0                    123334444444444555555555666777766 55      77777


Q ss_pred             HHHHH-HHHHHHHHHHHHHH
Q 007405          232 NFFYL-SVTVGAIVAFTLVV  250 (605)
Q Consensus       232 ~~~~~-~~~ig~~i~p~i~~  250 (605)
                      ++.+. ...+|+.+++.+++
T Consensus       325 ~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77555 34566777766544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.75  E-value=8.9e-07  Score=94.23  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007405           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (605)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~  156 (605)
                      .....+.+.|+.+++|++..+.+.......++..++.++.|++.||+ |||+++.++.++..++.+.+.+.
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567788889999999999888889999999999999999997 99999999988888877776654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.74  E-value=9.8e-07  Score=93.94  Aligned_cols=179  Identities=9%  Similarity=0.012  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ++..++..++...+.-....+...|+++.-|.+....+...++..+.-.+.-.+.+++-.|+ |-+++++++.+.+++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33444455555555555677888898766557777777777777778888888999999997 99999999999888877


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      .+.+....     |.                  .......+++..+.|+..+....+...++.+..|++.      |.++
T Consensus       288 ~l~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~  338 (400)
T PF03825_consen  288 LLYAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATA  338 (400)
T ss_pred             HHHHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHH
Confidence            66665411     00                  0111223334567999999999999999999999999      9999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhhhchH------HHHHHHHHHHHHHHHHHHHh
Q 007405          231 FNFFYL-SVTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       231 ~~~~~~-~~~ig~~i~p~i~~~l~~~~gw~------~~f~~~~~~~~i~~~~~~~~  279 (605)
                      .+++.. ...+|..+|..++|++.+.+|-+      ..+.+.++..++..+++...
T Consensus       339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            999777 57899999999999999987643      34444555444554444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1.7e-07  Score=101.21  Aligned_cols=176  Identities=13%  Similarity=0.101  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccc-------hHHHHH-H
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-------RYWTIA-I  141 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------R~~~~~-~  141 (605)
                      .+|.+.+..++...+++.+..++|.|+.+.+|++..+.|+..++-.+...+..+++|.++|+...       +||.+- +
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            58999999999999999999999999999999999999999999999999999999999998722       112211 1


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 007405          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~  221 (605)
                      +.....++++.+++.       +    |.          .. ......+.++..+.|+..++..-+    ..|. .++. 
T Consensus       339 ~~~~~ai~l~~l~~~-------~----~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~-apq~-  390 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFT-------S----DE----------HR-LLAVILLTIAIGLSGFNISGFYKN----HQDI-APQH-  390 (466)
T ss_pred             HHHHHHHHHHeeeec-------C----CC----------cc-hHHHHHHHHHHHHcccchhhhHhh----hhhc-cchH-
Confidence            222222222222221       1    10          00 011122222222233333332222    1222 3344 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHH
Q 007405          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~---~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                           -+..+++.+...++.+.++|.+.+.+..   ...|+++|++.+++.+++.+.+.+
T Consensus       391 -----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  391 -----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence                 6889999999999999999999999883   236999999999888887766544

>PRK11043 putative transporter; Provisional

Probab=98.72  E-value=1.5e-06  Score=92.81  Aligned_cols=148  Identities=12%  Similarity=-0.001  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (605)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~  159 (605)
                      +....++....+.|.|++ ++|++..+.++......++..++..+++++.||+ |||+.+....++..++.+.+.+....
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445556667777775 5899999999877777888888999999999997 99998776666555554433322110


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHH
Q 007405          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (605)
Q Consensus       160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~  239 (605)
                          ..                   .+...++++..+.|++.+...+...+...|..| ++      |+++.++++....
T Consensus       292 ----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~  341 (401)
T PRK11043        292 ----SH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQL  341 (401)
T ss_pred             ----cc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHH
Confidence                00                   233444555667788888888888887777776 45      8999999888777


Q ss_pred             HHHHHHHHHHHHHHhhhchH
Q 007405          240 VGAIVAFTLVVYIQMEHGWG  259 (605)
Q Consensus       240 ig~~i~p~i~~~l~~~~gw~  259 (605)
                      .++.+++.+.+.+.+.....
T Consensus       342 ~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        342 GLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHHHHHccCCChhH
Confidence            78888888888887643333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.67  E-value=3e-09  Score=117.03  Aligned_cols=201  Identities=14%  Similarity=0.087  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007405           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (605)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~  154 (605)
                      .+..+++ +..++......+-+.+.|+++.++++++.+.+-++..+..++..+..+|. -|-|.+-++.++..+|.++++
T Consensus         9 ~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    9 CLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh
Confidence            3334444 55666666677788999999999999999999999999999999999985 677788889999999999988


Q ss_pred             HhhhccccC-CC------------CCcc-----cccccccCCC----CCccchhHHHHHHHHHHHHHhhcccchhhhhhh
Q 007405          155 LCATMKVFM-PN------------QDNC-----DRISQLLGSC----EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG  212 (605)
Q Consensus       155 ~~~~~~~~~-~~------------~~~c-----~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~  212 (605)
                      +-.+...-. +.            .+.|     ...+.+...|    ++....-+..++++.++.|+|....++...+++
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            754332110 00            1112     0000011111    122222346788899999999999999999999


Q ss_pred             hccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhc-hHHHHHHHHHHHH
Q 007405          213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIAMG  270 (605)
Q Consensus       213 ~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~---------------------~~g-w~~~f~~~~~~~~  270 (605)
                      =|..+++.      -...+++++....+|.++|.++++.+..                     +.| |+..|.+.+++.+
T Consensus       167 DDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~  240 (539)
T PF03137_consen  167 DDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF  240 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            99999988      7888999999999999999988875431                     124 8888988888776


Q ss_pred             HHHHHHHHhcccc
Q 007405          271 ISNMLFFIGTPLY  283 (605)
Q Consensus       271 i~~~~~~~~~~~~  283 (605)
                      +..+.++.+.++.
T Consensus       241 l~aipl~~FPk~l  253 (539)
T PF03137_consen  241 LSAIPLFFFPKKL  253 (539)
T ss_dssp             -------------
T ss_pred             HHHHHHHcCCccC
Confidence            6666555544444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09669 putative symporter YagG; Provisional

Probab=98.65  E-value=9.3e-07  Score=95.89  Aligned_cols=159  Identities=12%  Similarity=0.041  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .+.+++..++...+...... +..|. +..++ +....+.......+...++.+++++++||+ |||+.+.++.++..++
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            33444444444444322223 33443 33333 233334455556677778889999999997 9999999887766554


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~r~  228 (605)
                      .....+.       ++                   .+.+.+++..++.|++.++..+...++++|..|.++.++ +...+
T Consensus       308 ~~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g  361 (444)
T PRK09669        308 SALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG  361 (444)
T ss_pred             HHHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence            3333221       11                   355666777788999999999999999999987543211 11145


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      ..++.+.++..+|.++|+.++|++.+..|+
T Consensus       362 ~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        362 LVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            677888889999999999999998876665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.64  E-value=1.4e-06  Score=93.44  Aligned_cols=161  Identities=9%  Similarity=-0.048  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .+...+..++......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++|+++.++.++.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            33444445554444456678889998653 255555566677777788999999999999997 9999988888877776


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .++....                            .+. ....+.++.|++.+.++|.+.+...+..+++.      +..
T Consensus       313 ~ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~  357 (410)
T TIGR00885       313 CLGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG  357 (410)
T ss_pred             HHHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh
Confidence            6666653                            121 22455667888889999999999999998765      322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh------chHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAM  269 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~------gw~~~f~~~~~~~  269 (605)
                      ... ..++ .+|+.+.|.+.|++.|..      +.+..|++..++.
T Consensus       358 s~~-l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       358 AAG-LVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHH-HHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            222 2222 399999999999999954      4677787765543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.62  E-value=9.9e-07  Score=96.52  Aligned_cols=165  Identities=12%  Similarity=-0.008  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      |.++..++..++.....+......+.|.+..++ +....+.+.....++..++.++.++++||+ |||++++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            456666777777777766665655544444444 455556666666678888999999999997 999999988887776


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL  227 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~r  227 (605)
                      +.+.......    .++                   .+.+.+++..++.|++.+...+...++++|..|.++-.+ +...
T Consensus       309 ~~~~~~~~~~----~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        309 SCGVLLLMGL----AAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHHHHHHHhc----cCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            6655543211    011                   345566666678899999999999999999977442110 1113


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      +..+++..+..-+|..+++.+.|++.+..|+
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5577788888999999999999998776554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.58  E-value=4e-06  Score=88.30  Aligned_cols=177  Identities=8%  Similarity=0.066  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      .+|...+........|+..-...+.|.+..++-   +....|.+.+.-.+.-++.-.+..++-+|+ |.|+.++++.++.
T Consensus       221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~  299 (412)
T PF01306_consen  221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM  299 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence            466555554554455555555578888765542   334456777777788888888999999997 9999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      ++=.++++++                            .+++.+.+.+.+.|+-.+.......-++++.+|++-      
T Consensus       300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------  345 (412)
T PF01306_consen  300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------  345 (412)
T ss_dssp             HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred             HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence            9888888876                            577888899999999999999999999999999987      


Q ss_pred             hhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       227 r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      ..+...+ +..+..+|..+.+.++|++.|+.|++..|++.+.++++..++..+..+
T Consensus       346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            7788877 456889999999999999999999999998888776655555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.58  E-value=5.3e-06  Score=87.91  Aligned_cols=121  Identities=12%  Similarity=0.235  Sum_probs=92.5

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHH
Q 007405          418 TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF  497 (605)
Q Consensus       418 ~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~  497 (605)
                      .+..++.++...+..|+.+.++=++.++..                       .++|..++.-++.|+..+.++...-+|
T Consensus       427 ~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  427 FKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----------------------QNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             HHHHHHhcccceeeehhhHHHHHHHHHHHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            334445555555678888877777777766                       467778888899999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHH
Q 007405          498 LYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  576 (605)
Q Consensus       498 ~~~~~P~~~rg~~~g~~~-~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~  576 (605)
                      +...+|+++|..++|+.. ....+|..+|+++++.+....+                  ....|...++.+++.++++..
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg------------------~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG------------------ARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh------------------hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 4778999999999988766433                  245677766666666555554


Q ss_pred             HHh
Q 007405          577 SAY  579 (605)
Q Consensus       577 ~~~  579 (605)
                      .-+
T Consensus       546 iq~  548 (618)
T KOG3762|consen  546 IQL  548 (618)
T ss_pred             hhh
Confidence            433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.57  E-value=5.6e-07  Score=94.51  Aligned_cols=139  Identities=11%  Similarity=-0.000  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+...+..++.....+++..+++.|+++.+|.+..+++.....+.+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            44444555555566677888899999999999999999999999999999999999999997 99988888777666665


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      .++.+...     ++                   .+...+++..++.+++.|...+...++.+|.+| ++      +++.
T Consensus       306 ~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~  354 (366)
T TIGR00886       306 FLVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV  354 (366)
T ss_pred             HHHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence            55554310     00                   034444455555666666666777788888887 45      8999


Q ss_pred             HHHHHHHHHHH
Q 007405          231 FNFFYLSVTVG  241 (605)
Q Consensus       231 ~~~~~~~~~ig  241 (605)
                      .++.+...++|
T Consensus       355 ~g~~~~~~~~g  365 (366)
T TIGR00886       355 SGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHhccCC
Confidence            98887776665

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.56  E-value=2.6e-06  Score=93.13  Aligned_cols=187  Identities=11%  Similarity=0.099  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHhhhHHH----HHhhhccchHHHH--
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI--  139 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~G----~laD~~~GR~~~~--  139 (605)
                      .++.+++..++....+....+.++.|..+..+.+...    .+++.+.-.+...+..|+..    ++.||..+.+...  
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            3455555555666666667777888887766554222    45555655555555555544    4555421333333  


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 007405          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (605)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~  219 (605)
                      .+|+++..++....++.....   .                .+...+.+++++..++.++|.....|...+++++..|++
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~---~----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~  413 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFA---D----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR  413 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc---C----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence            677888877777766532110   0                001147888899999999999999999999999999999


Q ss_pred             CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      .      |++.++++..+..+|..+++.+.....+..+|...|...++.+++..+++++..+
T Consensus       414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9      9999999999999999999988887777777888887777666655555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.52  E-value=9.3e-06  Score=86.43  Aligned_cols=140  Identities=11%  Similarity=-0.066  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      ......+.|+++.+|.+..+.++.......+..++.++.+++.||+ ||+...  ......++.+.......    ... 
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~----~~~-  296 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGW----FGV-  296 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHH----hcc-
Confidence            3344567788888999999999888888888888888889999986 743332  22222222222211100    000 


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .+.+.++++.++.+++.+...+...+...|.+| ++      +++..++.+...++|..+++
T Consensus       297 ------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~  351 (394)
T PRK11652        297 ------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAA  351 (394)
T ss_pred             ------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHH
Confidence                              234556667788899999888999999989887 35      78888888888899999999


Q ss_pred             HHHHHHHhhhchH
Q 007405          247 TLVVYIQMEHGWG  259 (605)
Q Consensus       247 ~i~~~l~~~~gw~  259 (605)
                      .+++++.....+.
T Consensus       352 ~~~~~~~~~~~~~  364 (394)
T PRK11652        352 LLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHccCCchHH
Confidence            9998886654333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.42  E-value=1.9e-05  Score=77.91  Aligned_cols=156  Identities=12%  Similarity=0.104  Sum_probs=105.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +|..+.....++.+.. ..|.+. .....+++.+|+|.+|...+-..-.++..++ ++.|.+.|++ |.+.+++++.+..
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs-~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~   76 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFS-AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG   76 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchh-hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence            3544444444443332 223333 3466789999999999999888888888865 7889999997 9999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .+|..++.++..-..  +                   +...+.+.+..++.|.+.+......-....+.||. +      
T Consensus        77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------  128 (250)
T PF06813_consen   77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------  128 (250)
T ss_pred             HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence            999998887633110  0                   02345555555566666555545545555688984 6      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                      |++..++.-....+++.+-..+-..+..
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            8999888666666666655544444433

>PRK11462 putative transporter; Provisional

Probab=98.42  E-value=2.5e-05  Score=85.19  Aligned_cols=158  Identities=9%  Similarity=0.016  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007405           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (605)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~  152 (605)
                      .++...++..+...........|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+.++..+..++
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~  309 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA  309 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence            333344444444333333334444444553 33345666777888889999999999997 9998877555444333333


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh-hhhHHH
Q 007405          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT-HLDRFF  231 (605)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~-~r~~~~  231 (605)
                      ..+.       +.                   .+...+++..++.|++.+...+...++++|..+-++-++-+ .-+..+
T Consensus       310 ~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~  363 (460)
T PRK11462        310 MFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF  363 (460)
T ss_pred             HHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence            3221       00                   22333344445678887777777788889887743211101 124445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhch
Q 007405          232 NFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (605)
Q Consensus       232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw  258 (605)
                      +...+...+|.++++.+++++.+..|+
T Consensus       364 a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        364 AGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666678899999999988887665444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.41  E-value=3e-05  Score=80.48  Aligned_cols=172  Identities=16%  Similarity=0.127  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~  153 (605)
                      .+...++..++++.=-..+-+|--+.||++..+.+.+...+..+..++..+.|++..|-.+++++..+++.+..++..+.
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li  292 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI  292 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence            34444555666655556788899999999999999999999999999999999988865589999989998888888877


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  233 (605)
                      .++...                         .+.+.+..+.+++|++.|.+....-+..-|+..+++      -+.+++.
T Consensus       293 i~a~~~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~  341 (403)
T PF03209_consen  293 ILAGPL-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGA  341 (403)
T ss_pred             HHHHhc-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHH
Confidence            776431                         356788899999999999998888888899998888      7899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh----------hchHHHHHHHHHHHHHHHHHH
Q 007405          234 FYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       234 ~~~~~~ig~~i~p~i~~~l~~~----------~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      +..+-.++.++|..++|.+.|-          .+|..+|.+-++..++++.+.
T Consensus       342 WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  342 WGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888877653          246667777776666555543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.39  E-value=1.9e-05  Score=79.11  Aligned_cols=142  Identities=21%  Similarity=0.268  Sum_probs=107.9

Q ss_pred             HHHHHhCCCh--hHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 007405           95 FMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (605)
Q Consensus        95 yl~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  172 (605)
                      .....++.+.  ...++..+.+.+...++.++.|+++||+ |||+.+..+.....++.+.+.+...              
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------------   91 (338)
T COG0477          27 LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------------   91 (338)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--------------
Confidence            3344555554  4778889999999999999999999998 9998888888765555455554310              


Q ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhHHHHHHHH-HHHHHHHHHHHHHH
Q 007405          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVV  250 (605)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~i~p~i~~  250 (605)
                                  .....+++.|++.|++.+...+...+++.|.+|. +.      |+...+.... ...+|..++|.+++
T Consensus        92 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477          92 ------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             ------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2467888889889999999999999999999998 44      8888888777 57888888887777


Q ss_pred             HHHhh--hchHHHHHHHHHHH
Q 007405          251 YIQME--HGWGSAFGALAIAM  269 (605)
Q Consensus       251 ~l~~~--~gw~~~f~~~~~~~  269 (605)
                      .+...  .+|++.|.+.....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         154 LLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHH
Confidence            66654  56888655554433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.00018  Score=76.69  Aligned_cols=99  Identities=19%  Similarity=0.273  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 007405          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (605)
Q Consensus       111 ~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  190 (605)
                      ..+-.....+..++++.+-|.. |.|+.+.++...+.+..+....                             .|.+.+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~  105 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL  105 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence            5556667788889999999986 9999999999988877666655                             356778


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 007405          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (605)
Q Consensus       191 ~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~  245 (605)
                      +++-.+.|+|.+..+.-...++++..+++.      +.+..++.-.....+..+|
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhh
Confidence            888899999999999999999999988887      5555555333333333333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.33  E-value=1.1e-05  Score=85.93  Aligned_cols=160  Identities=14%  Similarity=0.048  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      ....++..++...++....+.++.|.+..+|.+.............+..++.++..+|++|+ |+|+++.++.++.+++.
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~  316 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY  316 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence            45555566676666665666677777878888888888888888888888899999999997 99999999999999999


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh-hhhH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT-HLDR  229 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~-~r~~  229 (605)
                      ++..+...                          .+...+++..++.++|.+...+...++++|..+-++-++-+ .-|.
T Consensus       317 ~~~~f~~~--------------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi  370 (467)
T COG2211         317 LLLYFTPA--------------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI  370 (467)
T ss_pred             HHHHhhcC--------------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence            99888621                          46778888889999999999999999999998855422211 1244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g  257 (605)
                      .++...+..=+|.+++..+.+++....|
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4555666777788888777777665444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.30  E-value=5.4e-05  Score=81.30  Aligned_cols=170  Identities=12%  Similarity=0.036  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .++...+..++....++......|.|+++.+|.+..+.++......++..++..+.+.+.++. ++++.+.....+..++
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence            355555556666667777777889999999999999999887777777777777777765444 4444443333344444


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+++......   .+                    .+....+++.++.++|.+...|+.....-.+. ...      +++
T Consensus       298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~------~G~  347 (413)
T PRK15403        298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLP------KGT  347 (413)
T ss_pred             HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCC------CcH
Confidence            4443332100   01                    23333566777888888888777775332221 222      567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i  271 (605)
                      ..++++.....+..+++.+++++.+. +-.+.|.+..++..+
T Consensus       348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            77777777777788888888888765 556666655544433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=1.7e-06  Score=88.38  Aligned_cols=173  Identities=12%  Similarity=0.005  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007405           82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV  161 (605)
Q Consensus        82 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (605)
                      ++..-..-+.++.++.+.+..+.-+.+.+..-..+.+.++..+.|.|+||+ +.-+.+....-+.++|......-     
T Consensus       283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP-----  356 (464)
T KOG3764|consen  283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP-----  356 (464)
T ss_pred             cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH-----
Confidence            344444567788889999986555888777778888999999999999998 93333333333333342222211     


Q ss_pred             cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHH
Q 007405          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (605)
Q Consensus       162 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig  241 (605)
                            .|               .++..+++-+...+++.+...+..........+.++..+-.--++..++...+..+|
T Consensus       357 ------~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla  415 (464)
T KOG3764|consen  357 ------FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA  415 (464)
T ss_pred             ------hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence                  12               466777777778888888877777777777777665331112678888888999999


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       242 ~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      ..+||.++|.+.+..|++|.-.+.++.-++...++.+++.
T Consensus       416 ~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  416 YAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI  455 (464)
T ss_pred             hhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888877776666665555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.28  E-value=3.9e-05  Score=84.54  Aligned_cols=175  Identities=14%  Similarity=0.120  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhCCCh------hHHHHHHHHHHHHHHHhhhHH----HHHhhhccchHHHHHHHHHH
Q 007405           78 EMAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~--~~~~s~------~~~~~~~~~~~~~~~~~~~~~----G~laD~~~GR~~~~~~~~~~  145 (605)
                      .++....+|.+...++.++..  ..+.+.      ...++..+.-.+...+..++.    +++.||+ +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            335556666666666666543  111211      113444455454555555555    6667775 777888899999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+.+.+......      .|             ...+.+++++..+++|+|.....|...+++.+..|++.     
T Consensus       360 ~~l~f~~l~~~~~~~~------~~-------------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~-----  415 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN------DA-------------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL-----  415 (500)
T ss_pred             HHHHHHHHHHHHHhcC------CC-------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH-----
Confidence            9999888776532110      00             01345678888899999999999999999999999999     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhchHHHHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                       |++.++.+..+..+|..++..+.+....          ..++.+.|...++..++..++++.
T Consensus       416 -rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        416 -MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999888888887777666643221          123566776666555444433333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.24  E-value=5e-05  Score=78.30  Aligned_cols=160  Identities=13%  Similarity=0.071  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      .+...+..|+..-+=-.+.++++.|+.+..|.+..+++..++.+..+..++..++-++-.|+ -..|.+.+..++-.+-+
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            33344444443333334567899999988999999999999999999999999999998887 77777766665444433


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      +...+.                            .+. .-+.+.++.|+..+.+.|.+.+...+..+.+.+     .+++
T Consensus       317 ~~~~l~----------------------------~g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~  362 (422)
T COG0738         317 LAVALI----------------------------GGV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG  362 (422)
T ss_pred             HHHHHh----------------------------cCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce
Confidence            344433                            232 334455788999999999999999999994431     2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~  268 (605)
                         .-....+|+++-|.+.|++.|..|-...+......
T Consensus       363 ---~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pll  397 (422)
T COG0738         363 ---LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLL  397 (422)
T ss_pred             ---eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence               22234589999999999999999877776633333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.22  E-value=3.3e-05  Score=84.71  Aligned_cols=175  Identities=7%  Similarity=0.038  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHhhhHHHHHhhhccchHH-------HHHHHHHHH
Q 007405           78 EMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY  146 (605)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~----~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~-------~~~~~~~~~  146 (605)
                      ..+....+......++.|.++..+.+..    ...+..+...+...+..|+.|++.||+ |||+       -+.+++++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence            4444555555557778888754333211    223444444455667778889999997 9886       366777777


Q ss_pred             HHHHHHHHHhhh-ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       147 ~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      .++.+.++.... ......                   ..+.++++...++.|+|.+...+...+++.+..|++.     
T Consensus       357 ~~~~~~~~~~~~~~~~~~~-------------------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~-----  412 (489)
T PRK10207        357 SLGFLTAAAAGMWFADAQG-------------------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL-----  412 (489)
T ss_pred             HHHHHHHHHHHHhhcCCCC-------------------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence            766654432110 000000                   0345667777789999999999999999999999998     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhchHHHHHHHHHHHHHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                       ++..+++++...++|..+|..++.....          ...+.+.|...++..++..++++.
T Consensus       413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999887765521          112445565555554444444444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.19  E-value=1e-05  Score=85.73  Aligned_cols=169  Identities=8%  Similarity=-0.095  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007405           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (605)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~  155 (605)
                      +..++.......+.+++--++ ++.+-.+.-.|.....-..+-++.-++.++|..++ |+-+++.++++..++=.+.+..
T Consensus       378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~  455 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY  455 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence            333344444434455554444 45555555555444445556667778889999997 9999999999988887777666


Q ss_pred             hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHH
Q 007405          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (605)
Q Consensus       156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~  235 (605)
                      .                            +|+|+.+..-+++|+..+.++.++.+++++..|++-      |.++.++..
T Consensus       456 L----------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~  501 (618)
T KOG3762|consen  456 L----------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQ  501 (618)
T ss_pred             h----------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHH
Confidence            5                            688888889999999999999999999999999999      899999866


Q ss_pred             H-HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          236 L-SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       236 ~-~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      . ...+|-.+|.+|+|.+.+.+|-+..|.+.++.+++.++.+....
T Consensus       502 g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  502 GIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            5 56899999999999999999989899888888777777665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.17  E-value=5.3e-05  Score=66.90  Aligned_cols=113  Identities=17%  Similarity=0.274  Sum_probs=82.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcc
Q 007405          424 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  503 (605)
Q Consensus       424 ~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P  503 (605)
                      .++++.+..+..+..++.+.....                       .+.+.+....++.+++.+...+....++.+..|
T Consensus        25 ~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880        25 FGRKPVLLVGLFIFVLSTAMFALS-----------------------SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            344444556666666665554433                       245556667788899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHH
Q 007405          504 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  577 (605)
Q Consensus       504 ~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~  577 (605)
                      ++.|+.++++.+....+|..+++.+.+.+.+..        +|          +..|++.+++.++..+..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--------GW----------RAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--------ch----------HHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999998876422        23          456776666666665555544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=1.6e-05  Score=86.32  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY  146 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~~~~~~~~~~~  146 (605)
                      .+|...+..++.....|++..++|.|+++..|+|..++..+...+.++..++.++.|+++||.   +.+|..+.+.+.++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            378888999999999999999999999997779999999999999999999999999999993   26776666666555


Q ss_pred             HHHH-HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          147 LAGL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       147 ~~~~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      .+.. +.+...                            .+......+.+....+.....++......+......     
T Consensus       354 ~~~g~~~l~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----  400 (495)
T KOG2533|consen  354 AIIGAISLLAA----------------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----  400 (495)
T ss_pred             HHHHHHHHHhh----------------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence            4433 333322                            111222222222333333444455555555555444     


Q ss_pred             hhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhchHHHHHHHH
Q 007405          226 HLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEHGWGSAFGALA  266 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~-p~i~~~l~~~~gw~~~f~~~~  266 (605)
                      +|-+..+....+.+.+++++ ++..+.....++|.+.|++..
T Consensus       401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            14444444444444444443 333444555567888885433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.11  E-value=0.0002  Score=77.59  Aligned_cols=207  Identities=14%  Similarity=-0.032  Sum_probs=142.7

Q ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChh------H----HHHHHHHHHHHHHHhhhHHHHHhh
Q 007405           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------D----SSNAVNNFLGISQASSVLGGFLAD  130 (605)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----~~~~~~~~~~~~~~~~~~~G~laD  130 (605)
                      +..+.-++.++.++.++++..++++.+..+...|+.+ .++-++.      +    ..+....+.+...+..++--++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999999999999999999999875 4553321      1    224445555555566667778888


Q ss_pred             hccc-hHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCC-CCCccchhHHHHHHHHHHHHHhhcccchh
Q 007405          131 AYLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPC  207 (605)
Q Consensus       131 ~~~G-R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~g~~~~~  207 (605)
                      ++ | ||++..++.++..+++....+....+. ..+.         +.+. --+|........++...+.|+..+.....
T Consensus       331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~si  400 (477)
T TIGR01301       331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY---------DGDGESLPPPTGIKASALIVFAILGIPLAITYSI  400 (477)
T ss_pred             Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc---------cccccccCcchhhHHHHHHHHHHhhHHHHHHHHH
Confidence            86 9 577778998888888877765432100 0000         0000 00111112355556667889999999888


Q ss_pred             hhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       208 ~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                      -.+++++..+++..    +.|..++++|.+..+...+..+..|.+.+..|  -.+.+.+.++.++++.+..+...|+
T Consensus       401 Pfal~s~~~~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       401 PFALASIRSSNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             hHHHHHHHccccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            89999999986441    16999999999999999999888887665554  4567788888888887777666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.09  E-value=0.005  Score=64.84  Aligned_cols=156  Identities=8%  Similarity=-0.010  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHH-hCCChhHHH-HHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           89 SVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        89 ~~~l~~yl~~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      -+++..|++++ .|++..+.. -+.-.+.-......++...+.|.. |-|++++++.+...+...++.+.          
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------   91 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------   91 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence            46889999997 999998876 444455556666777778999975 99999999888877777776664          


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .+...+-+.-++.|++.+. ..+..+++=-..|+++      -.+..++...+.-+|-.++.
T Consensus        92 ------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~  146 (412)
T PF01770_consen   92 ------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISS  146 (412)
T ss_pred             ------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              4677777888888888776 3455566656666655      45555666666667777777


Q ss_pred             HHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHhc
Q 007405          247 TLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGT  280 (605)
Q Consensus       247 ~i~~~l~~--~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (605)
                      +++-.+..  ..++....++......+++++.+++.
T Consensus       147 ~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  147 LLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66665554  33466676777766666666655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.99  E-value=3.4e-05  Score=84.21  Aligned_cols=136  Identities=10%  Similarity=-0.152  Sum_probs=105.6

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccccc
Q 007405           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (605)
Q Consensus        97 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  176 (605)
                      .+.+|+++.+.+.+.....++..++..+.+++.+|+ +.|+++.++.++..++.....+...-......   .       
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i-------  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I-------  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---C-------
Confidence            457999999999999999999999999999999986 99999999999888776554321100000000   0       


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007405          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (605)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~  256 (605)
                              .+...++...++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.+..
T Consensus       349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                    012233344567788888877888999999999999      999999999999999999999999998877


Q ss_pred             c
Q 007405          257 G  257 (605)
Q Consensus       257 g  257 (605)
                      |
T Consensus       415 g  415 (468)
T TIGR00788       415 G  415 (468)
T ss_pred             C
Confidence            6

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.99  E-value=3.9e-08  Score=106.67  Aligned_cols=188  Identities=14%  Similarity=0.087  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      .....+....+..+..+....+...++.+..+.+..  ........+...++.+++.++.||+ |||++++++.++..++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444444444433444455556666676666  2222333455566777778999997 9999999998887777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      .+.++....   ..++              ++ ...+...+............+..+....+.+|.||++.      |.+
T Consensus       330 ~~~~~~~~~---~~~~--------------~~-~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~  385 (451)
T PF00083_consen  330 SLILGIIFF---LGVS--------------SS-SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RST  385 (451)
T ss_pred             ccccccccc---cccc--------------cc-cccccccceeeeeccccccccccccccccccccccccc------ccc
Confidence            666641000   0000              00 00112121111111112222344566688899999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  284 (605)
                      +.++.+....+++.++|.+..++.+..+-...|.+.+.+.++..+..+...++.+
T Consensus       386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            9999888888999999888888777666344555555555555555555555544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.95  E-value=0.00026  Score=78.38  Aligned_cols=196  Identities=13%  Similarity=0.045  Sum_probs=106.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      +..++......+..++..+..+....+....+-+..|.+... .+...+......++..++.++.||+ |||+.++.+.+
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence            445555655555555555544444334444445566665433 4444555566677777889999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      .+.++.++++..........+             |.  .......+....+.+.....+..+....+.+|.||.+.    
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~----  428 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPN-------------SS--KGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL----  428 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCC-------------cc--cchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence            999999888865321100000             00  00112222222223333334444566678899999999    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHHHhcccc
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLY  283 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~-~~~~~~~~~  283 (605)
                        |+.+.++......+...+-...--.+.+..++...|.+.+....+... ..+...++.
T Consensus       429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence              888888744433222222211222222222234455555554444444 344444544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.92  E-value=0.032  Score=58.86  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 007405          472 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  533 (605)
Q Consensus       472 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~  533 (605)
                      +.|.+....+..|+-.+..++.....+.+..|++.|..++|.....-.+|..++..+.-.+.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            55555566677788889999999999999999999999999999999999999988876554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.91  E-value=2.7e-06  Score=88.79  Aligned_cols=124  Identities=18%  Similarity=0.152  Sum_probs=101.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHh
Q 007405          421 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE  500 (605)
Q Consensus       421 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~  500 (605)
                      .+|.++...+++|.++-.++.+..++.                       ..+|.+++.-.+.|+||....|..++++.+
T Consensus        92 adryNR~~v~~vG~~iW~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD  148 (493)
T KOG1330|consen   92 ADRYNRKRVIAVGIFIWTLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIAD  148 (493)
T ss_pred             HhhcCcceEEeeHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhh
Confidence            344455556788888888888777765                       356667778889999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          501 EAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  580 (605)
Q Consensus       501 ~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  580 (605)
                      .+|++.|+++.+++++...+|+.+|-.....+.+.++       .|          ++.|++.+++.++..++..++.++
T Consensus       149 ~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W----------r~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  149 SFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW----------RWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             cCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce----------EEEEEeehHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999888877766444       25          567899999999998888888765


Q ss_pred             ceec
Q 007405          581 YKYR  584 (605)
Q Consensus       581 ~~~~  584 (605)
                      -.++
T Consensus       212 P~rg  215 (493)
T KOG1330|consen  212 PERG  215 (493)
T ss_pred             cccc
Confidence            5443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.89  E-value=0.021  Score=61.05  Aligned_cols=192  Identities=10%  Similarity=-0.091  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ..+.+....++.+..--......+.|+.+.+.-+.--.+..-..-.+...++.+.-|...||. -|.+++..+.++--+.
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS   81 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence            345566666666666655556677788776554444344333444556667777888999997 9999988887765554


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCc-cchhHHHHHHHH-HHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPA-KSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ..........- +...             .... +......+++.. ++..+..=+..+...++=-|+...=..++...+
T Consensus        82 v~~s~~~~~~l-~~~~-------------~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L  147 (432)
T PF06963_consen   82 VAASCALFLLL-LSYP-------------SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL  147 (432)
T ss_pred             HHHHHHHHHHH-HhCC-------------ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence            44333221100 0000             0000 001112222222 222222222222223333455432211111224


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (605)
                      .+..+...-.=-+.-.+||++.|.+.+..|......+.+...+++++.=
T Consensus       148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE  196 (432)
T PF06963_consen  148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE  196 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence            4444444444566788999999999988888877777766666666543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.87  E-value=0.00012  Score=58.38  Aligned_cols=68  Identities=18%  Similarity=-0.009  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 007405           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (605)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~  145 (605)
                      ...++...+...+.++++.|+. +.|++..+.+.+.++..+...+++|+.|+++||+ ||++.++....+
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            3444555555567788999987 5999999999999999999999999999999997 888877766554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.78  E-value=0.0016  Score=72.10  Aligned_cols=154  Identities=11%  Similarity=0.018  Sum_probs=106.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH-H
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-A  140 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~-~  140 (605)
                      .+++|.+...+++.++..+.+|.+..+.|......++-+..   ..++....+..+..++..+.|.+.-++ ||.|.. +
T Consensus       306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li  384 (599)
T PF06609_consen  306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI  384 (599)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence            34456677778888888888998888888888888877653   456777777778888888889998875 876655 4


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 007405          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (605)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~  220 (605)
                      ++.++++++..+++...      +                    .|....+...++.|+|.|...........-..|+++
T Consensus       385 ~~~~~~ta~~Gama~~~------~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~  438 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAVR------P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED  438 (599)
T ss_pred             HHHHHHHHHHHHHHHcc------C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence            56555555444444321      1                    122233455677888888876666555555566666


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (605)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~  251 (605)
                            .+...++....-.+|+.+|..+-..
T Consensus       439 ------ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  439 ------IGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             ------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                  8888888888888888888766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.0011  Score=64.47  Aligned_cols=156  Identities=17%  Similarity=0.103  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      .....|+-+.+++...+.+.+.-.......++..+.|-|+|+- |||+......+    ..+++.+.-+           
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTKh-----------  120 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITKH-----------  120 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhhc-----------
Confidence            3445677788888888888776666667777788889999996 99997654444    4444444311           


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhh-hhccCCCCCchhhhhhhHHHHH-HHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFT  247 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~d~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~i~p~  247 (605)
                         |           ++.-.++++|++-|+..+....+..+. ++|.-+.+.-+ .+=...-++- ..+...+-+.++.+
T Consensus       121 ---S-----------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGl  185 (454)
T KOG4332|consen  121 ---S-----------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGL  185 (454)
T ss_pred             ---C-----------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHH
Confidence               0           345578899999999988877666654 45554333211 0001111111 11223334445555


Q ss_pred             HHHHHHhhhc--hHHHHHHHHHHHHHHHHHH
Q 007405          248 LVVYIQMEHG--WGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       248 i~~~l~~~~g--w~~~f~~~~~~~~i~~~~~  276 (605)
                      .+..+.+..+  --.+|-..+...+++..+.
T Consensus       186 fgn~lvd~~slGPVAPFdAAacfLaigmAvi  216 (454)
T KOG4332|consen  186 FGNLLVDTFSLGPVAPFDAAACFLAIGMAVI  216 (454)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            5566666655  3445655544444444433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.017  Score=59.34  Aligned_cols=61  Identities=11%  Similarity=0.058  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 007405          474 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  534 (605)
Q Consensus       474 ~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  534 (605)
                      ...+..|.+.+...-..+.+.+++..+++|++.-|+.|.+.|...++|+..=..+...+.+
T Consensus       370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            3455578888888888889999999999999999999999999888887665555554444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.63  E-value=0.0021  Score=58.71  Aligned_cols=106  Identities=15%  Similarity=0.217  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH
Q 007405          109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML  188 (605)
Q Consensus       109 ~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  188 (605)
                      ..+++......+..++...+.+++ |.|++++++.+.+++-......                             .+.+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~   90 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNSY   90 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence            445555566777778888889986 9999999999988865555433                             3567


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007405          189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (605)
Q Consensus       189 ~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~  250 (605)
                      .++.+-.+.|++.+..+.....++.+..+++.      |++..+++......+..+|.++.-
T Consensus        91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            78888899999999999999999999887776      777777766666666666655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.0001  Score=77.11  Aligned_cols=180  Identities=16%  Similarity=0.046  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH--------HHHHHHHHH-HHhhhHHHHHhhhccchHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFLGIS-QASSVLGGFLADAYLGRYWT  138 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~--------~~~~~~~~~-~~~~~~~G~laD~~~GR~~~  138 (605)
                      -+.++.....-|+.-+++|+...+...- -+.+++.+.+...        ...+..... ..+-.++.++.|++ |||+.
T Consensus       303 g~~Llgt~~~WFllDiafy~~nL~~s~I-~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~i  380 (538)
T KOG0252|consen  303 GKHLLGTAGTWFLLDIAFYGQNLFQSVI-FSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYI  380 (538)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccHHHHH-HHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHH
Confidence            3556667777778888888877654433 3445555443322        112222222 22556677789997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 007405          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (605)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~  218 (605)
                      -+-+.+++++..+.++..-..                    .+ +  ....++..-+.+-++.-+..+....+-+|.||+
T Consensus       381 q~~GF~~~~i~~~~~~~~y~~--------------------~~-~--~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa  437 (538)
T KOG0252|consen  381 QLMGFFIMTIFFFVIAGPYNQ--------------------LE-N--TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA  437 (538)
T ss_pred             HHhhHHHHHHHHHHHcCCccc--------------------cc-c--cCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence            999999888877777654110                    00 0  111111111233345555556666777999999


Q ss_pred             CCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhchHHHHHHHHHHHHHHHHHHHH
Q 007405          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-----~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +.      |++.-++...+.-+|+++|...-.++.+     ..|.+++|++.+.++.+..+..++
T Consensus       438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            99      9999999999999999999999999998     678899999998888777665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.57  E-value=0.0014  Score=74.24  Aligned_cols=179  Identities=11%  Similarity=0.063  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHhhhHHHHHhhhccc--hHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~G--R~~~~~~~~~~~  146 (605)
                      .++...+..++....++++.+++|.|+++.+|+++.+++++.....+ +..++.+++|+++||+ +  .|+++.+++++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence            46777788888899999999999999999999999999988887665 5688999999999997 7  567777777766


Q ss_pred             HHHHHHHHHhhhc------------cc----cCCCCC-ccccccc-cc--------------------------------
Q 007405          147 LAGLTGITLCATM------------KV----FMPNQD-NCDRISQ-LL--------------------------------  176 (605)
Q Consensus       147 ~~~~~~~~~~~~~------------~~----~~~~~~-~c~~~~~-~~--------------------------------  176 (605)
                      +++.++......+            +.    ..+... .||.+-. +.                                
T Consensus       410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~  489 (633)
T TIGR00805       410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM  489 (633)
T ss_pred             HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence            6665442210000            00    000001 2321100 00                                


Q ss_pred             -C-----------------CCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHH-H
Q 007405          177 -G-----------------SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-S  237 (605)
Q Consensus       177 -~-----------------~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~-~  237 (605)
                       +                 .|++.=...+..+++..++..+..+.........+-...|+++      |.-+.++..+ .
T Consensus       490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~~  563 (633)
T TIGR00805       490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLCM  563 (633)
T ss_pred             eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHHH
Confidence             0                 1211111113334444444444444444444556667889998      9999999555 5


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 007405          238 VTVGAIVAFTLVVYIQME  255 (605)
Q Consensus       238 ~~ig~~i~p~i~~~l~~~  255 (605)
                      ..+|.+-+|++-|++.|.
T Consensus       564 rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       564 RVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHhcCCChhHHHhhhhhc
Confidence            677888899999999886

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=97.43  E-value=0.0014  Score=72.74  Aligned_cols=176  Identities=11%  Similarity=0.040  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhH--HHHHHHHHHHHHHHhhhHHHHHhhhccchHH---------
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW---------  137 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~~--~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~---------  137 (605)
                      .+|+++...+|..-+-..+.-| .-++.+.+ |.+.++  ....++++.++.+++.+.+|+++. +.-||+         
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt~  431 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPITI  431 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchhH
Confidence            5788888888765554434444 55777788 763332  233789999999999999999983 323333         


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (605)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~  217 (605)
                      .+.+..+ ..++.+++++..                            ....++++-++.|++.|..++...+...|+|.
T Consensus       432 ~l~~~~~-~~~~~lll~~~~----------------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg  482 (591)
T PTZ00207        432 ALFIPSV-CIITMLTLFLTL----------------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA  482 (591)
T ss_pred             HHHHHHH-HHHHHHHHHHHC----------------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence            2223333 445555555431                            11468889999999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhh----------c---hHHHHHHHHHHHHHHHHHHHHhcccc
Q 007405          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEH----------G---WGSAFGALAIAMGISNMLFFIGTPLY  283 (605)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~-p~i~~~l~~~~----------g---w~~~f~~~~~~~~i~~~~~~~~~~~~  283 (605)
                       ++      -++-+++...+..+|+.+- -.+.|.+.|.-          |   ++..|.+.+...+++.++.....-++
T Consensus       483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence             77      7888888888888887664 45667776431          2   67888888877777776655544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.41  E-value=0.0026  Score=68.10  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 007405          419 CHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL  498 (605)
Q Consensus       419 ~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~  498 (605)
                      ...++.+.++.+.++++..++..++.++.                       .+++.+.+.-+++|++|+... +...++
T Consensus        84 lLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI  139 (511)
T TIGR00806        84 LLTDYLRYKPVLVLQALSFVCVWLLLLLG-----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYI  139 (511)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            34456666677777777777776666654                       467788899999999999999 999999


Q ss_pred             HhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 007405          499 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  533 (605)
Q Consensus       499 ~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~  533 (605)
                      +..+|++.|++++|+++....+|.++++.+.+.+.
T Consensus       140 ~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       140 FSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999843

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.40  E-value=0.002  Score=66.15  Aligned_cols=152  Identities=14%  Similarity=0.078  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccch-HHHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIY  146 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR-~~~~~~~~~~~  146 (605)
                      ...+..+....+.....|....+...++ .+.+|+++.|.+-+.+.-.+...+.+..-.+..||..|- +-.+..++.+.
T Consensus       260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~  339 (451)
T KOG2615|consen  260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI  339 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence            3566666666666666666666666666 457999999999888888888888888888888887443 33444444444


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 007405          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (605)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~  226 (605)
                      .-..++...+                            .....++++..+..+..+...++...++....|+++      
T Consensus       340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------  385 (451)
T KOG2615|consen  340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------  385 (451)
T ss_pred             HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence            3344444433                            345678888889999999999999999999999999      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                      |++..+++.....++-.+||+++|.+..
T Consensus       386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  386 RGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            9999999999999999999999988764

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.00024  Score=74.33  Aligned_cols=165  Identities=12%  Similarity=0.091  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhc---cchHHHHHH-HHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAI-FTT  144 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~GR~~~~~~-~~~  144 (605)
                      +.++.+..+.+...+++-.=.+++++|+. .+|.+..-.+.+-..--+...+.+|+.|..|||.   +||||-++. +.+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            55666666666666665444567788874 7899888888777777788899999999999985   688776665 456


Q ss_pred             HHHHHHHHHHHhhhccccC-CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 007405          145 IYLAGLTGITLCATMKVFM-PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~  223 (605)
                      ..+++.++...++.+.... +..+            ++.+......++++..+.=+.....+...-++++|....++   
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~------------~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~---  175 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNER------------KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA---  175 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcc------------cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence            6677777777765432111 1100            11222456667777777778888888899999999998777   


Q ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 007405          224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVYI  252 (605)
Q Consensus       224 ~~~r~~-~~~~~~~~~~ig~~i~p~i~~~l  252 (605)
                         +.+ +.+++.+...+|..+|..+++++
T Consensus       176 ---~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  176 ---KKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ---hhhccchhHHHHHHhcceeeeeccccc
Confidence               333 88888889999999988877643

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.38  E-value=0.32  Score=52.84  Aligned_cols=169  Identities=11%  Similarity=0.016  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHHHHHh-hhHHHHHhhhccchHHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI  141 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~GR~~~~~~  141 (605)
                      ++.++...+..++..+.|+.+.+     +.+.+..+     .+...++-+...+...+. .++-+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            44566666666666666554433     45666553     244555555554544444 78899999997 99999988


Q ss_pred             HHHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCccch------hHHHHHHHHHHHHHhhcccch-hhhhhh
Q 007405          142 FTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSW------QMLYLYTVLYITGFGAAGIRP-CVSSFG  212 (605)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~g~g~~~~-~~~~~~  212 (605)
                      ....+.....+.++...+  ..++|+ ..|++.    ..-.+++-.      +.|...+.-+...+-...... ...++.
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~----~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fa  154 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKL----LSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH----HhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777766666654221  011111 001000    000000000      011111111122233233333 678899


Q ss_pred             hccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (605)
Q Consensus       213 ~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~  253 (605)
                      .|.+..++      -.+.+++++.+.|+|..+++.+..++.
T Consensus       155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998      789999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.32  E-value=0.0098  Score=64.94  Aligned_cols=158  Identities=10%  Similarity=-0.059  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHhhhHHHHHhhhccchH-H-----H
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRY-W-----T  138 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~-~-----~  138 (605)
                      ..+..+++...+....+....+.+..|..+..+.+-    -..+|..++-.+...+..|+.+++=.|. +|| +     .
T Consensus       268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~  346 (493)
T PRK15462        268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWG  346 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHH
Confidence            344444454444455555555667777765432221    2245555665555666666666664443 321 1     1


Q ss_pred             -HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405          139 -IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (605)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~  217 (605)
                       +.+++++..++...+.++.....-                   ....+..++++..+++++|.-+..|...+++++..|
T Consensus       347 Kfa~g~~~~g~~f~~l~~~~~~~~~-------------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP  407 (493)
T PRK15462        347 KFALGLGLMSAGFCILTLSARWSAM-------------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI  407 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC-------------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh
Confidence             566777777777777665321100                   001466778888889999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 007405          218 ERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI  252 (605)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~-~~ig~~i~p~i~~~l  252 (605)
                      ++-      |+..++.++.. ..+|..++..+++..
T Consensus       408 ~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        408 PGV------TGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999      99999998763 367766666655544

>PRK03612 spermidine synthase; Provisional

Probab=96.94  E-value=0.11  Score=57.42  Aligned_cols=158  Identities=13%  Similarity=0.103  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      .-....-.+...+|-+....+.++++|.++..++..++|+++++- -|+.. +-++..+............. +.. .  
T Consensus        33 yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~-~~~-~--  107 (521)
T PRK03612         33 YELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAF-AFQ-G--  107 (521)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H--
Confidence            334445556667888888999999999999999999999887543 22221 11111111111111111100 000 0  


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                        .....++...++.++..|+..|....+..+... ++      -++..+-.|....+|+++|.
T Consensus       108 ------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~  162 (521)
T PRK03612        108 ------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGG  162 (521)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHH
Confidence                              111122333345677777777776665544322 12      34556677788889999999


Q ss_pred             HHHHHHHh-hhch-HHHHHHHHHHHHHHHHH
Q 007405          247 TLVVYIQM-EHGW-GSAFGALAIAMGISNML  275 (605)
Q Consensus       247 ~i~~~l~~-~~gw-~~~f~~~~~~~~i~~~~  275 (605)
                      ++.+++.- ..|- +..+.+..+-.+++++.
T Consensus       163 l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        163 LAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            98887654 5664 34444333333444333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.91  E-value=0.043  Score=60.78  Aligned_cols=123  Identities=9%  Similarity=0.016  Sum_probs=81.0

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccccc
Q 007405           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (605)
Q Consensus        97 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  176 (605)
                      ...+|.+..........   .........+.+-|+. |||.....+.++..++.+..++....                 
T Consensus       345 ~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~-----------------  403 (521)
T KOG0255|consen  345 VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDD-----------------  403 (521)
T ss_pred             hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhcc-----------------
Confidence            34455544433322222   3444445557899997 99999999999999888888875210                 


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                              .......+...+..++.+........+.+|++|+..      |..+.+.......+|++++|.+......
T Consensus       404 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  404 --------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             --------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    110112222223333334444455888899999999      9999999999999999999987755544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.91  E-value=0.0057  Score=66.18  Aligned_cols=128  Identities=12%  Similarity=0.075  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHH-HHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG-FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      .+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++..|++...+.....+++             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~-------------  328 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA-------------  328 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence            346788889999999999999998888888888888 45554 599999999999999999999987             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~  249 (605)
                                     ++.++.+....+.++ .....|...++.+-+.++++      +++.+++....-.+.++++|.+-
T Consensus       329 ---------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~  386 (463)
T KOG2816|consen  329 ---------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALY  386 (463)
T ss_pred             ---------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHH
Confidence                           456777776655444 46678899999999999999      99999999999999999999887


Q ss_pred             HHHHh
Q 007405          250 VYIQM  254 (605)
Q Consensus       250 ~~l~~  254 (605)
                      +.+..
T Consensus       387 ~~i~~  391 (463)
T KOG2816|consen  387 GNIFA  391 (463)
T ss_pred             HHHHH
Confidence            76643

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.86  E-value=0.00026  Score=78.24  Aligned_cols=181  Identities=12%  Similarity=0.107  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHhhhHHHHHhhhc-cchHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYL  147 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~-~GR~~~~~~~~~~~~  147 (605)
                      .+....+...++.+...++.+++|-|+..+|+.++++++.+.+...+ +..++.++||++..|+ ++.|+++....+..+
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            36667777788888888999999999999999999999988877655 6789999999999997 345555555555444


Q ss_pred             HHHHHHHH-----hhhcc---ccCCC------------CCccccccc------ccCCCCCccchhHHHHHHHHHHHHHhh
Q 007405          148 AGLTGITL-----CATMK---VFMPN------------QDNCDRISQ------LLGSCEPAKSWQMLYLYTVLYITGFGA  201 (605)
Q Consensus       148 ~~~~~~~~-----~~~~~---~~~~~------------~~~c~~~~~------~~~~~~~~~~~~~~~~~~~~~l~g~g~  201 (605)
                      ++.+....     +...+   ...+.            ...||....      ....|+..-...+..+++..++..+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            44433110     00000   00000            011221100      123354441234455555555544444


Q ss_pred             cccchhhhhhhhccCCCCCchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 007405          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH  256 (605)
Q Consensus       202 g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~i~p~i~~~l~~~~  256 (605)
                      +..........-...++++      |.-+.++... ...+|..=||++-|++.|..
T Consensus       466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             --------------------------------------------------------
T ss_pred             HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            5444444455568888888      9999999555 56778888999999998863

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.85  E-value=0.0056  Score=64.30  Aligned_cols=185  Identities=13%  Similarity=0.042  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~  150 (605)
                      +.+.+....+....+|++.+.+-.- ...-|.+...+|.......+++.++..+.|.++||.-.-|.+.++......++.
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~  346 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT  346 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            4444444444445555554433322 234567778889999999999999999999999997334555555555555553


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHH
Q 007405          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (605)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  230 (605)
                      ..+.....    .+                    ...+.++..-.+.|++..+..|...-+..|..-|..+      ++.
T Consensus       347 ~~l~~~t~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~tS  396 (480)
T KOG2563|consen  347 LMLLTCTL----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GTS  396 (480)
T ss_pred             HHHHHhhc----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------ccc
Confidence            22222111    00                    1223444555677888888888888888776655442      444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc----hHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007405          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (605)
Q Consensus       231 ~~~~~~~~~ig~~i~p~i~~~l~~~~g----w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  286 (605)
                      .|+.+...++.+.+=.++-+...+..+    |...-+.....+.+..++..+.++.+++.
T Consensus       397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            555555555656655666666666655    33333334444445555555555555443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.81  E-value=0.015  Score=46.84  Aligned_cols=66  Identities=8%  Similarity=-0.072  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~  156 (605)
                      +.+.+.+.++.++|.++++++.+.-.+++.++.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466678899999999999999999999999999999999986 88899999999988888888875

Note that many members are hypothetical proteins.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.30  E-value=0.098  Score=58.94  Aligned_cols=179  Identities=12%  Similarity=0.077  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHhhhHHHHHhhhc-cchHHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAY-LGRYWTIAIFTTIYLA  148 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~-~GR~~~~~~~~~~~~~  148 (605)
                      .....+...++.+.+.|..+++|-|+.++++.+...+..+.+... -+.+++..+||++.-|+ +.-|.+..+.++..++
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            667788888999999999999999999999999999998886654 45778899999999986 3445555554444444


Q ss_pred             HHHH---HHHh--hhc------------cccCCCC---Cccccccc-c--------------------------------
Q 007405          149 GLTG---ITLC--ATM------------KVFMPNQ---DNCDRISQ-L--------------------------------  175 (605)
Q Consensus       149 ~~~~---~~~~--~~~------------~~~~~~~---~~c~~~~~-~--------------------------------  175 (605)
                      .++.   ..+.  ...            +....++   ..||..=- +                                
T Consensus       474 ~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~  553 (735)
T KOG3626|consen  474 SLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDG  553 (735)
T ss_pred             HHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCC
Confidence            3333   2110  000            0000100   00221000 0                                


Q ss_pred             ---------------------cCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHH
Q 007405          176 ---------------------LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (605)
Q Consensus       176 ---------------------~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~  234 (605)
                                           ...|...-...+..+++..++..+..+........++-...++++      |.-++++.
T Consensus       554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~~  627 (735)
T KOG3626|consen  554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGFQ  627 (735)
T ss_pred             ceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHHH
Confidence                                 001212212233344444444444444444555566678889998      99999995


Q ss_pred             HH-HHHHHHHHHHHHHHHHHhh
Q 007405          235 YL-SVTVGAIVAFTLVVYIQME  255 (605)
Q Consensus       235 ~~-~~~ig~~i~p~i~~~l~~~  255 (605)
                      .+ ...+|.+-+|++-|++.|.
T Consensus       628 ~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  628 WMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHhcCCchHhhhhhHhh
Confidence            55 5677888899999999875

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.22  E-value=0.21  Score=53.48  Aligned_cols=138  Identities=9%  Similarity=-0.077  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007405           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (605)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (605)
                      +.-..+..|+... |+++...+..-+.-.+.+..++.+..++.+|+ |-.|+=+++.....++..++..+...+..    
T Consensus       276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~----  349 (432)
T PF06963_consen  276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS----  349 (432)
T ss_pred             cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence            3445678898877 99999999999999999999999999999997 99999999988887777776655332110    


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007405          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (605)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p  246 (605)
                                    +....+...++.+..+-=+|.=++--+..-++-|..|+++      |+...+.-+...++.-.+..
T Consensus       350 --------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~  409 (432)
T PF06963_consen  350 --------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSF  409 (432)
T ss_pred             --------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHH
Confidence                          0011345556666666667777778888899999999998      99999998887777777766


Q ss_pred             HHHH
Q 007405          247 TLVV  250 (605)
Q Consensus       247 ~i~~  250 (605)
                      .++-
T Consensus       410 ~~~i  413 (432)
T PF06963_consen  410 VLTI  413 (432)
T ss_pred             HHHh
Confidence            5443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.08  E-value=0.087  Score=52.09  Aligned_cols=95  Identities=13%  Similarity=0.031  Sum_probs=67.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhc
Q 007405          423 GASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA  502 (605)
Q Consensus       423 ~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~  502 (605)
                      +.+++..+.+|.++..+++.+....-.++                .++.+.|.+....++.+.+..+...+......+.+
T Consensus        62 ~~gp~~~l~iG~~~~~~GY~~~~l~~~~~----------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF  125 (250)
T PF06813_consen   62 RFGPWVVLLIGAVLGFVGYGLLWLAVSGR----------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF  125 (250)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhCc----------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC
Confidence            44556667778777777776665542211                11135566666666667788888888888888999


Q ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 007405          503 PDAMKSIGSAYAALAGGLGCFAASILNSIIKS  534 (605)
Q Consensus       503 P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  534 (605)
                      |. .||.+.|+......+++.+-+.+...+.+
T Consensus       126 P~-~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  126 PR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             cc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            95 69999999999999999888887766543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.98  E-value=0.048  Score=57.62  Aligned_cols=124  Identities=13%  Similarity=0.099  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchh---
Q 007405          429 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA---  505 (605)
Q Consensus       429 ~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~---  505 (605)
                      -+.+|.++..++.+++.+....       .. .     ... .+...+.+.++++++|.++.=|....+..++.+++   
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~-------~~-~-----~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP-------PS-L-----PSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS-------SS-C------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc-------ch-h-----hhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            3667888888888775554210       00 0     001 34566778888999999999999999999998776   


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceec
Q 007405          506 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  584 (605)
Q Consensus       506 ~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  584 (605)
                      .|..+...+....++|..++..+.+++.+..        +|          ...|.+.++..+++++.++...++++++
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~--------~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY--------GW----------FLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhcccc--------ch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            5667778888999999999999988877522        24          5678888888888888877766666655

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.95  E-value=0.19  Score=53.86  Aligned_cols=165  Identities=13%  Similarity=0.059  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchH-------HHHHHHHHHHHHHHHHHHHh
Q 007405           88 LSVNMVTFMFYVMHKS----FADSSNAVNNFLGISQASSVLGGFLADAYLGRY-------WTIAIFTTIYLAGLTGITLC  156 (605)
Q Consensus        88 ~~~~l~~yl~~~~~~s----~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~-------~~~~~~~~~~~~~~~~~~~~  156 (605)
                      ..+.+..|..+.-+.+    .-...+..+.-.+...+..|+..++--+. +|+       .-+-+++++..++.+.+...
T Consensus       303 ~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~  381 (498)
T COG3104         303 MGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLA  381 (498)
T ss_pred             ccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            3455666765532222    11223444444445555566666665553 433       22334555555555554443


Q ss_pred             hhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHH
Q 007405          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (605)
Q Consensus       157 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~  236 (605)
                      .... .                 .+.+..+.++++.+.+++++|.=+..|...++++...|++-      .+..++.+.+
T Consensus       382 ~~~~-~-----------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfL  437 (498)
T COG3104         382 GIWF-G-----------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFL  437 (498)
T ss_pred             HHhh-c-----------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHH
Confidence            1110 0                 00122567888888999999999999999999999999987      8888899888


Q ss_pred             HHHHHHHHHHHHHHH------HHhhhchHHHHHHHHHHHHHHHHHHH
Q 007405          237 SVTVGAIVAFTLVVY------IQMEHGWGSAFGALAIAMGISNMLFF  277 (605)
Q Consensus       237 ~~~ig~~i~p~i~~~------l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (605)
                      +...|..++..+.+.      ..+.......|+..+....+..+..+
T Consensus       438 t~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            888888887766652      22223344556655555444433333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.54  E-value=0.11  Score=56.09  Aligned_cols=133  Identities=13%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhH
Q 007405          427 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM  506 (605)
Q Consensus       427 ~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~  506 (605)
                      ++-+.+|.+++.++-+++..++..                  ++...+++....++.|+|.+. ....=.|+.+..-.+.
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~------------------~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d  162 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYV------------------PNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED  162 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc
Confidence            334778888888888887655432                  212678889999999998544 3455666666555566


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhcee
Q 007405          507 KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  583 (605)
Q Consensus       507 rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~  583 (605)
                      |.++++.....+.+|..+||.+...+.....    .+..|++. +.-+.|...=|+.+++.++.+++..++.++...
T Consensus       163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~----~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGE----KGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC----CceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            7777777777777888888877766544221    11223332 222223344567778888888877777765443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=2.2  Score=46.03  Aligned_cols=114  Identities=20%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             HHHHHhhhHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCccchhHHHHHH
Q 007405          116 GISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (605)
Q Consensus       116 ~~~~~~~~~~G~laD~~--~GR~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  192 (605)
                      .+..++..+.+.+++|.  +||++++.++.++..++.++.-++...-. +.++           ..-.....++.....+
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t-----------~~~~~~~~~~~~~~~i  358 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT-----------DSPPLLFTPSYYLALI  358 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC-----------cccccccccchhHHHH
Confidence            34444556666776654  59999999999999988888776522100 1110           0001111123334444


Q ss_pred             HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007405          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (605)
Q Consensus       193 ~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~  247 (605)
                      .-++.|++-++.......++++.+ +++      |..+++++-+--.++..++-.
T Consensus       359 i~~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  359 IGFLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHhh
Confidence            457899999999999999999999 455      788888876666666655443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.45  E-value=3.4  Score=47.07  Aligned_cols=91  Identities=27%  Similarity=0.382  Sum_probs=73.5

Q ss_pred             chHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 007405          471 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  550 (605)
Q Consensus       471 ~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~  550 (605)
                      ++.+|++++|+++++||.+.....+|+.++++|+++|+..++++.+..++|+.+...+...=.        -...|    
T Consensus       563 ~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~--------~~~~~----  630 (654)
T TIGR00926       563 VSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN--------FSVQA----  630 (654)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------ChHHH----
Confidence            788999999999999999999999999999999999999999999999999999988875411        01122    


Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          551 INTGRFDYLYWLLAVLSVINFCAFLYSAYR  580 (605)
Q Consensus       551 ~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  580 (605)
                             .-|.+++.+.++..+++.++++.
T Consensus       631 -------~~~~~~~~~~~~~~~~f~~~a~~  653 (654)
T TIGR00926       631 -------AEFFLFASLMLVVMAIFSILAYF  653 (654)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhc
Confidence                   34666666666666666666654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.96  E-value=0.9  Score=48.09  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007405          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (605)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~  254 (605)
                      +.+.+++..+..|+..|+.+.+....+.|..++++      |.-.++....+-.+|..++.+++-++..
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55666666678899999999999999999988888      9999999888888888888877766543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.01  E-value=1.3  Score=47.97  Aligned_cols=90  Identities=16%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhHHHHHhh---cchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 007405          472 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEE---APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA  548 (605)
Q Consensus       472 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~---~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~  548 (605)
                      +.......+++..+|..+......+...|.   -|.+ +|..++.....+.+|+.++..+.+...+..+           
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-----------  152 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-----------  152 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----------
Confidence            344455566667888888888888888775   4555 8899999999999999999999887655222           


Q ss_pred             CCCcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007405          549 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  580 (605)
Q Consensus       549 ~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  580 (605)
                             .+..|.+.+++..+..+..+++..+
T Consensus       153 -------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  153 -------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             -------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence                   1234666666666666555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=92.17  E-value=1.6  Score=44.51  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=71.5

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH
Q 007405           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (605)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~  140 (605)
                      ++.+++.-|.++.+....++...+|-+ ..++...+..++|....      ...........++.+.+..+ +|-|+++.
T Consensus        21 ~r~~~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~sl------~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~   92 (390)
T KOG3097|consen   21 RRKRLGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVSL------GALYLSLIDSSMFMPLLIRF-LGTKWTMV   92 (390)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccchh------hhhhHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence            344455556666666666666555443 34555555544432211      11122233344444566666 59999998


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 007405          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (605)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~  218 (605)
                      ++...+......--.                             ..+..++.+-...|+|.+..+..-.+++++.-..
T Consensus        93 lav~~Y~lyiA~Nl~-----------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen   93 LAVFPYALYIAANLE-----------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             HHHHHHHHHHHhhcc-----------------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence            888776644322211                             3556677777889999999998888887765443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=91.30  E-value=8  Score=39.93  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             chHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 007405          471 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  550 (605)
Q Consensus       471 ~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~  550 (605)
                      .++|+.-..|++...-..+..+....-+.+....+.-|...|+..+.   +-.+=+.+.-++.+..|         +.-+
T Consensus       324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd~~g---------~~L~  391 (433)
T KOG3810|consen  324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFV---ALILQSILTLIVVDDRG---------LGLD  391 (433)
T ss_pred             cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHH---HHHHHHhheEEEEcccc---------cCCC
Confidence            46778888899988888888888887788778888888888887763   33344444444444222         1111


Q ss_pred             Cc--CcchhHHHHHHHHHHHHHHHHHHH
Q 007405          551 IN--TGRFDYLYWLLAVLSVINFCAFLY  576 (605)
Q Consensus       551 ~~--~~~~~~~f~~~a~l~~v~~~~~~~  576 (605)
                      +.  -.-|..+|.+++++.++.....+.
T Consensus       392 ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  392 IRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             cceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            11  111334577777777777555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=90.92  E-value=25  Score=38.37  Aligned_cols=73  Identities=15%  Similarity=0.109  Sum_probs=53.7

Q ss_pred             HHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 007405          195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (605)
Q Consensus       195 ~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~  272 (605)
                      ++.++........--..+.+++|.+++     |..+++-+....++...+..++++.+.+..||.....+.-++.++.
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            335555566666666778888876543     8999999888888888777667799999999998777665555443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.43  E-value=2.6  Score=38.49  Aligned_cols=62  Identities=10%  Similarity=0.020  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 007405          472 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  533 (605)
Q Consensus       472 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~  533 (605)
                      +.+.+++.-++.|+|.++.+++.-.++.+...++.|++..|++....+.+..+|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999999999999999999988888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.58  E-value=34  Score=36.99  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007405          472 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  531 (605)
Q Consensus       472 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~  531 (605)
                      +-++.++..+++|+..+......+.+..+.++++.|..+..+..++-.+|-.+|+.+.-.
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566668889999999999999999999999999999999999999999999887543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.04  E-value=3.5  Score=40.82  Aligned_cols=140  Identities=13%  Similarity=0.078  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhhccchHH---HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcc
Q 007405          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYW---TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK  183 (605)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  183 (605)
                      -|.+.+.|+++..+++-+...+..|-  |.+   .+.+..++......+..+...   ..|+                  
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP~------------------  340 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILTSS---VSPS------------------  340 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHHhc---cCCC------------------
Confidence            46778888888887777776666553  222   233333322222222111110   1121                  


Q ss_pred             chhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 007405          184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  263 (605)
Q Consensus       184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~  263 (605)
                      +.++..-+++..++-.+.|.++|.+.-+=.+..|++.      |.+.++++....++..-++-...-.=....+-|..|.
T Consensus       341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~  414 (454)
T KOG4332|consen  341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG  414 (454)
T ss_pred             cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence            1334444666667778889999999988888889888      9999999998887755543211000001234567788


Q ss_pred             HHHHHHHHHHHH
Q 007405          264 ALAIAMGISNML  275 (605)
Q Consensus       264 ~~~~~~~i~~~~  275 (605)
                      ++.+...++.+.
T Consensus       415 icS~~~~~a~i~  426 (454)
T KOG4332|consen  415 ICSAFLFVASIL  426 (454)
T ss_pred             hhHHHHHHHHHH
Confidence            877766655443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=87.87  E-value=4.3  Score=43.84  Aligned_cols=56  Identities=14%  Similarity=0.205  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007405          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (605)
Q Consensus       187 ~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i  248 (605)
                      -+..++..++.|+..|-.......+..+..++++      |..+-.+..++.++|-.+|..+
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566788999999888888888888888766      7777777777777777766654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=86.03  E-value=1.4  Score=46.85  Aligned_cols=90  Identities=9%  Similarity=-0.158  Sum_probs=58.2

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChh---------------H-HHHHHHHHHHHHHHhhhHHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFA---------------D-SSNAVNNFLGISQASSVLGG  126 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~---------------~-~~~~~~~~~~~~~~~~~~~G  126 (605)
                      .+..+|..+.+++..++..++.+...-+...++-++ ++=++.               + -.|-+.++.....+.+..--
T Consensus       274 ~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~  353 (498)
T KOG0637|consen  274 LKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVE  353 (498)
T ss_pred             HhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            355667888999999999888877666666665442 222211               1 12556667777788888889


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007405          127 FLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (605)
Q Consensus       127 ~laD~~~GR~~~~~~~~~~~~~~~~~~~  154 (605)
                      ++.|++ |-|+.++.+...+.++..+.+
T Consensus       354 ~l~~~~-g~r~~y~~~~~~f~~~~~~~g  380 (498)
T KOG0637|consen  354 KLSRKF-GTRKRYWGGVNAFGLATGLAG  380 (498)
T ss_pred             HHHHhc-CcceEEeehhHHHHHHHHHHh
Confidence            999997 855555555444444444444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=82.99  E-value=36  Score=36.28  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 007405          471 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  534 (605)
Q Consensus       471 ~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  534 (605)
                      .+.+++....++.|++... -.+-.++++..+|++.--++++......-+|.+++..++..+..
T Consensus        92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888888887544 67778999999999988899999999999999999999887665

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.86  E-value=85  Score=34.33  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 007405          474 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  534 (605)
Q Consensus       474 ~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  534 (605)
                      ..++.++++-.+..-..+.+..+|-.+++.+..=|++|.+.|...++|+.--..++-.+.+
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            3456678888888899999999999999999999999999999999998877666555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=80.98  E-value=70  Score=32.76  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             HHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 007405          483 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  532 (605)
Q Consensus       483 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  532 (605)
                      -|+-.+..++...--+.++.+++.|-.+|+.....-.+|-.++..+.--+
T Consensus       352 EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  352 EGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            35444555556666666778899999999999999999988888776443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	605
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		3e-11
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		2e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 73  FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD------SSNAVNNFLGISQASSVLGG 126
           +I  +E  ER +++G+   +  F+   +  S  +      + +  ++F+       +LGG
Sbjct: 16  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186
           ++AD + G+Y TI   + IY  G       A + +F  +                     
Sbjct: 76  WIADRFFGKYNTILWLSLIYCVG------HAFLAIFEHSVQG------------------ 111
Query: 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246
               YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A 
Sbjct: 112 ---FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFAS 165
Query: 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 288
             +  +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M+++     +H + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G     A+F    L  L  I L                 S L GS          
Sbjct: 78  ADRIIGA--RPAVFWGGVLIMLGHIVLALPFGA-----------SALFGSI--------- 115
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
               +L I G G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 116 ----ILIIIGTGF--LKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
           V   Q   G+  AF   AI M I  ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	605
2xut_A	524	Proton/peptide symporter family protein; transport	1e-107
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  331 bits (850), Expect = e-107
 Identities = 107/570 (18%), Positives = 203/570 (35%), Gaps = 95/570 (16%)

Query: 64  KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
               W   + +I  +E  ER +++G+   +  F+   +  S       A + +  ++F+ 
Sbjct: 6   DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
                 +LGG++AD + G+Y TI   + IY  G   + +                     
Sbjct: 66  GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
                     +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY 
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           ++  G+  A   +  +    G   AFG   + M ++ + F++G   Y H  P        
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
             V+ +A   +     +  L  +  + G  SA      I        L  A       + 
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
               +      K      V+ V++++R++ + A       +  +  +  + QA  M   +
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---V 330

Query: 411 GKLKLP------------VTCHP--------------RGASQLQRVGIGLAVSILSVIWA 444
                             +   P                 + L+++G G+A++ LS I  
Sbjct: 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVV 390

Query: 445 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 504
           G  +      +               LS +W ++ Y L+   EV      LEF Y +AP 
Sbjct: 391 GTIQLMMDGGSA--------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK 436

Query: 505 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLA 564
           AMK    ++  L+  +G     + N  +KS T          +   ++   F   ++  A
Sbjct: 437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--A 489

Query: 565 VLSVINFCAFLYSAYRYKYRSEQKHGNDYE 594
             +++    F   A  Y+ +   +     E
Sbjct: 490 GFAILAAIVFALYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M++++       + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G    +     + + G   +                            A  +   
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109

Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
           V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 95/644 (14%), Positives = 173/644 (26%), Gaps = 227/644 (35%)

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           K + D+ K+        I   E  + +     +V+    +F+ +          V  F+ 
Sbjct: 36  KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84

Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
                 VL     FL           ++ T +Y+       L    +VF     N  R  
Sbjct: 85  -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135

Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
               + Q L    PAK         ++  + G G    A                +    
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173

Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
           YK      F  F+L++    +   ++     +  Q++  W S +  +  I + I +    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
           +   + +  Y + L                    +   TR   V   L AA         
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 308 -HAAFSSSELIGLY---------EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 357
                +  E+  L          ++P     +  +         R L   A  +++ +  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP--------RRLSIIAESIRDGLAT 343

Query: 358 PSPWKLCTVTQVEEV--KTLVRL------------------VPIPACTIML--------- 388
              WK     ++  +   +L  L                    IP   + L         
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 389 -NVILTEFLTLSV----QQAYTMNTHMGKLKLPVTCHPRGASQLQRVGIGLAVSILSVIW 443
             V++ +    S+     +  T++     L+L           L R              
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLEL--KVKLENEYALHRS------------- 448

Query: 444 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 503
             I + Y     I   ++   L   P L  Y+    Y  IG              +    
Sbjct: 449 --IVDHYN----IPKTFDSDDLIP-PYLDQYF----YSHIG--------------HH--- 480

Query: 504 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW-- 561
             +K+I          +  F    L+                +L Q I   R D   W  
Sbjct: 481 --LKNIE-----HPERMTLFRMVFLDF--------------RFLEQKI---RHDSTAWNA 516

Query: 562 ---LLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 602
              +L  L  + F       Y+  Y     +   YE + N + D
Sbjct: 517 SGSILNTLQQLKF-------YK-PYIC--DNDPKYERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	605
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.87
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.82
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.35
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.33
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.13
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.86
2xut_A	524	Proton/peptide symporter family protein; transport	98.21

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=7.5e-30  Score=280.18  Aligned_cols=459  Identities=21%  Similarity=0.325  Sum_probs=277.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~  140 (605)
                      +++.++.+.+..++..+++|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34456778888999999999999999999999999      999999999999999999999999999999449999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 007405          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (605)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~  219 (605)
                      ++.++..++.+++.++                            . +.+.++++|++.|++.+...++..++++|++|++
T Consensus        90 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  141 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS  141 (524)
T ss_dssp             HHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence            9999999998888876                            3 6778899999999999999999999999999998


Q ss_pred             CchhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHH
Q 007405          220 SKDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV  296 (605)
Q Consensus       220 ~~~~~~~r~~---~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  296 (605)
                      +      |++   .+++++.+.++|..++|.+++++.+..||++.|++.+++.+++.++++...++.+..++++++..+.
T Consensus       142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (524)
T 2xut_A          142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF  215 (524)
T ss_dssp             T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred             c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence            8      654   4555888999999999999999999899999999988877666665544444333322322222222


Q ss_pred             HHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhh---hhccccCCCCCC-------ccccc
Q 007405          297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPW-------KLCTV  366 (605)
Q Consensus       297 ~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~  366 (605)
                      .+.+..+.+++.... +.... +....   ........+.+.+....+.....   ...+. ....+|       +.+..
T Consensus       216 ~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  289 (524)
T 2xut_A          216 LPVIRSALLTKVEGK-GNIGL-VLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPD  289 (524)
T ss_dssp             -----------CTTH-HHHHH-HHHHH---HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCS
T ss_pred             HHHHHHHHhhhhccc-Cccch-hhhhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccH
Confidence            222211111110000 00000 00000   00000000000000000000000   00000 000111       00111


Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccCC---CCe-----------eeCC-C--------CCCCC
Q 007405          367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---GKL-----------KLPV-T--------CHPRG  423 (605)
Q Consensus       367 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~ip~-~--------~~~~~  423 (605)
                      .+.+++++.+....+++....++..+.+..+.+..+...++...   .+.           ..+. .        ++.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (524)
T 2xut_A          290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK  369 (524)
T ss_dssp             SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence            12234455555555555555666666666665655554444321   000           0000 1        11223


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcc
Q 007405          424 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  503 (605)
Q Consensus       424 ~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P  503 (605)
                      .+...++.+|+++.+++++++...+..+          +   .... .+.+++++.+++.++++++..+..++++.+.+|
T Consensus       370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~---~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  435 (524)
T 2xut_A          370 LTALRKMGAGIAITGLSWIVVGTIQLMM----------D---GGSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAP  435 (524)
T ss_dssp             -CCHHHHHTHHHHHHHHHHTTTTTTTTT----------T---TTCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHh----------c---CCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            4455667778887777776655431100          0   0012 466778888999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCC-CCcCcchhHHHHHHHHHHHHHHHHHHHHHhhce
Q 007405          504 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  582 (605)
Q Consensus       504 ~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~  582 (605)
                      ++.||+++|++++..++|+.+++.+.+.+.+.++      .+|... +.+.  ..+.|++.+++++++.++++++.++++
T Consensus       436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (524)
T 2xut_A          436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ  507 (524)
T ss_dssp             TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999998765221      123211 1111  123377788888888888777777666


Q ss_pred             ecccC
Q 007405          583 YRSEQ  587 (605)
Q Consensus       583 ~~~~~  587 (605)
                      +++.+
T Consensus       508 ~~~~~  512 (524)
T 2xut_A          508 MQDHY  512 (524)
T ss_dssp             -----
T ss_pred             cchhh
Confidence            55433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=2.3e-28  Score=265.96  Aligned_cols=433  Identities=19%  Similarity=0.221  Sum_probs=281.2

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhh-ccchHH
Q 007405           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYW  137 (605)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~GR~~  137 (605)
                      .+++++.++.+++..++..+++|++.++++.|+++.     +|++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~   86 (491)
T 4aps_A            8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP   86 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence            345566788999999999999999999999999998     99999999999999999999999999999999 6 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (605)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~  217 (605)
                      ++.++.++..++.++++++                            .+.+.++++|+++|++.+...++..++++|++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  138 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYD  138 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence            9999999999999888775                            466788999999999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc---CCCC-Cch
Q 007405          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPL  293 (605)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~  293 (605)
                      +++.+    |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...++....   ++.. ...
T Consensus       139 ~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (491)
T 4aps_A          139 EHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP  214 (491)
T ss_dssp             SCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH
T ss_pred             ccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcccc
Confidence            87733    777888899999999999999999999999999999998877776666655443332211   1111 111


Q ss_pred             hHHHHHHHH--------HHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCcccc
Q 007405          294 TRVAQVLVA--------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCT  365 (605)
Q Consensus       294 ~~~~~v~~~--------~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (605)
                      .+..+....        +.....          +...+ ..         ..++................. ...|+...
T Consensus       215 ~~~~~~~~~~g~~l~~~~~~~~~----------~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  273 (491)
T 4aps_A          215 EEVKPLLVKVSLAVAGFIAIIVV----------MNLVG-WN---------SLPAYINLLTIVAIAIPVFYF-AWMISSVK  273 (491)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHH----------HHHHS-SC---------CTTHHHHHHHHHHHHHHHHHH-HHHC----
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH----------HHhcc-Cc---------ccccchhhhhHHHHHHHHHHH-HHHhhccc
Confidence            111110000        000000          00000 00         000000000000000000000 00000000


Q ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhh-hccC--CCCee--e---------CC-----CCCC-CCCC
Q 007405          366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTH--MGKLK--L---------PV-----TCHP-RGAS  425 (605)
Q Consensus       366 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~--i---------p~-----~~~~-~~~~  425 (605)
                       ....++++......+++....++..+.+..+.+..+... .+..  ..++.  +         +.     +|.. ++..
T Consensus       274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~  352 (491)
T 4aps_A          274 -VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS  352 (491)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence             011234444455566666667777776666543333221 1111  11110  0         00     2332 2334


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchh
Q 007405          426 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  505 (605)
Q Consensus       426 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~  505 (605)
                      ...++.+|+++.+++++++.......       +      ...+ .+.+++++.+++.++++++..+..++++.+.+|++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~  418 (491)
T 4aps_A          353 SPTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA  418 (491)
T ss_dssp             CHHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence            55667788888888877776553210       0      0111 46777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceec
Q 007405          506 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  584 (605)
Q Consensus       506 ~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  584 (605)
                      .||.++|+.+....+|..+++.+.+.+.+.                   ++...|+++++++++..++.+++.++.+++
T Consensus       419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998876541                   123567777888888877777776655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.94  E-value=2.3e-26  Score=250.03  Aligned_cols=417  Identities=13%  Similarity=0.071  Sum_probs=235.8

Q ss_pred             HHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007405           92 MVTFMFYVMHK--------SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (605)
Q Consensus        92 l~~yl~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (605)
                      ...++.+.++.        +..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++.......
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~  112 (491)
T 4gc0_A           34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI  112 (491)
T ss_dssp             THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS
T ss_pred             HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            44555555532        234567888899999999999999999997 999999999999999999998642110000


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHH
Q 007405          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (605)
Q Consensus       164 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  243 (605)
                      ..          ...-...-..+...++++|+++|+|.|+..+..+.+++|..|+++      |++..++.+.+..+|..
T Consensus       113 ~~----------~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A          113 NP----------DNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             SS----------SSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHH
T ss_pred             cc----------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhh
Confidence            00          000000001578899999999999999999999999999999999      99999999999999999


Q ss_pred             HHHHHHHHHHhh--------hchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccc
Q 007405          244 VAFTLVVYIQME--------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (605)
Q Consensus       244 i~p~i~~~l~~~--------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~  315 (605)
                      +++.++..+...        .+|++.+.+..+..++.++...                                ..||+|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~peSp  224 (491)
T 4gc0_A          177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY--------------------------------TVPESP  224 (491)
T ss_dssp             HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG--------------------------------GSCCCH
T ss_pred             hhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh--------------------------------cCCCCh
Confidence            998887766543        2466665554444333322211                                257777


Q ss_pred             cccccccCCCcccccCCcccccCCCcchhh--HhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHh
Q 007405          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLD--KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILT  393 (605)
Q Consensus       316 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  393 (605)
                      +| +..+++.+++.+..++...++......  ........+.  ....     ......++.........+.........
T Consensus       225 ~~-L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (491)
T 4gc0_A          225 RW-LMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK--TGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVV  296 (491)
T ss_dssp             HH-HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred             HH-HHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh--hhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence            77 776666555544433332211100000  0000000000  0000     000000111111000000000000000


Q ss_pred             hhhhHHHHHHhhhccCCC-------C-eeeCC----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 007405          394 EFLTLSVQQAYTMNTHMG-------K-LKLPV----TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE  461 (605)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~-------~-~~ip~----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (605)
                      ..+.....+....+....       + ..++.    ....++.+++..+..+...++++++.++.....           
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-----------  365 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------  365 (491)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred             HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----------
Confidence            000001111110000000       0 00000    112223334445556666666666555543211           


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCC
Q 007405          462 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK  541 (605)
Q Consensus       462 ~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~  541 (605)
                            .. .....++..+++.........|..+.+..|.+|.+.|++++|+.+..+++++++++.+.+.+.+..     
T Consensus       366 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-----  433 (491)
T 4gc0_A          366 ------QA-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-----  433 (491)
T ss_dssp             ------TC-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-----
T ss_pred             ------cc-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence                  01 122222222222222223345667788999999999999999999999999999999988764411     


Q ss_pred             CCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceecccCCCCCchhh
Q 007405          542 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEV  595 (605)
Q Consensus       542 ~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (605)
                          |...   ..+....|++++++++++.++.+++.+|+|+|+.||.++.+++
T Consensus       434 ----~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~  480 (491)
T 4gc0_A          434 ----WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP  480 (491)
T ss_dssp             ----HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred             ----HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence                1000   0012346888899999999999999999999999887655544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=2.2e-25  Score=239.02  Aligned_cols=386  Identities=13%  Similarity=0.055  Sum_probs=242.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (605)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~  146 (605)
                      +|+.++..++..++..+..+.+...++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            455566666666666666555555544 455667 9999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHH----hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 007405          147 LAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (605)
Q Consensus       147 ~~~~~~~~~----~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~  222 (605)
                      .++.+++++    +                            .+.+.++++|++.|++.+...+...++++|.+|+++  
T Consensus       103 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--  152 (451)
T 1pw4_A          103 AAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE--  152 (451)
T ss_dssp             HHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--
T ss_pred             HHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--
Confidence            999999887    4                            466788999999999999999999999999999988  


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHH
Q 007405          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV  301 (605)
Q Consensus       223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  301 (605)
                          |++.+++.+.+.++|..++|.+++++.+..| |++.|++.+++.++..++.++..++.+......+.         
T Consensus       153 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  219 (451)
T 1pw4_A          153 ----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI---------  219 (451)
T ss_dssp             ----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC---------
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh---------
Confidence                9999999999999999999999999888888 99999998887766655554444432211100000         


Q ss_pred             HHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhh
Q 007405          302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI  381 (605)
Q Consensus       302 ~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  381 (605)
                                  . .+   +.  ..+           .     +... ....    ...++.....+....+.++.   +
T Consensus       220 ------------~-~~---~~--~~~-----------~-----~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~---~  257 (451)
T 1pw4_A          220 ------------E-EY---KN--DYP-----------D-----DYNE-KAEQ----ELTAKQIFMQYVLPNKLLWY---I  257 (451)
T ss_dssp             ------------T-TT---CC--C----------------------------------CCTHHHHHHTSSCHHHHH---H
T ss_pred             ------------h-hh---cc--ccc-----------c-----cchh-hhhc----ccccccchHHHHHcCHHHHH---H
Confidence                        0 00   00  000           0     0000 0000    00000000000000011111   1


Q ss_pred             hHHHHHHHHHHhhhhhHHHHHH---hhhccCCCCee--------e----CCCCCCCCC--ChhHHHHHHHHHHH-HHHHH
Q 007405          382 PACTIMLNVILTEFLTLSVQQA---YTMNTHMGKLK--------L----PVTCHPRGA--SQLQRVGIGLAVSI-LSVIW  443 (605)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------i----p~~~~~~~~--~~~~~i~~G~~~~~-~~~~~  443 (605)
                      .+...+.+..+......+....   .+.+....++.        +    ...+..++.  +.+..+.++.++.. ++++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (451)
T 1pw4_A          258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV  337 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            1111111111111111111111   01110000000        0    001112222  22333334433333 33332


Q ss_pred             HHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhH-HH
Q 007405          444 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GC  522 (605)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~  522 (605)
                      +...                     ++.+.+.+....++.|++.....+....++.+.+|++.||.++|+.+....+ |.
T Consensus       338 ~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~  396 (451)
T 1pw4_A          338 YWMN---------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  396 (451)
T ss_dssp             TTSC---------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh---------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence            2211                     1024556666777888888888888899999999999999999999999999 99


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007405          523 FAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  579 (605)
Q Consensus       523 ~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  579 (605)
                      .+++.+.+.+.+..+                  +...|++.+++.+++.+++++..+
T Consensus       397 ~~~~~~~g~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          397 VAASAIVGYTVDFFG------------------WDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHHSSC------------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999998876333                  356788888888887777666544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=3.1e-23  Score=221.60  Aligned_cols=179  Identities=12%  Similarity=-0.013  Sum_probs=149.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (605)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~  144 (605)
                      +++++.++.+.+..++..+..+.+. .+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLND-ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            4456666666666666666655444 445567889999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (605)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~  224 (605)
                      +..++.+++......                         .+.+.++++|++.|++.+...+...++++|.+|+++    
T Consensus       100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----  150 (438)
T ss_dssp             HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred             HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence            999999888332110                         478899999999999999999999999999999999    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc-------------------------hHHHHHHHHHHHHHHHHHH
Q 007405          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLF  276 (605)
Q Consensus       225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-~~~g-------------------------w~~~f~~~~~~~~i~~~~~  276 (605)
                        |++.+++++.+.++|..++|.+++++. +..+                         |++.|++.++..++..+++
T Consensus       151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  226 (438)
T 3o7q_A          151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI  226 (438)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999988 5444                         9999987766655544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.87  E-value=3.6e-22  Score=209.20  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (605)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~  151 (605)
                      +.+....++..+......+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            34455556666665555555544 5678999999999999999999999999999999997 999999999999999998


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (605)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~  231 (605)
                      .+.++                            .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  126 (375)
T 2gfp_A           81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN  126 (375)
T ss_dssp             HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence            88876                            578889999999999999999999999999999998      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 007405          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (605)
Q Consensus       232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~  274 (605)
                      ++++....+|..++|.+++++.+..||++.|++.++..++..+
T Consensus       127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988999999987776555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.82  E-value=5.1e-21  Score=204.03  Aligned_cols=169  Identities=11%  Similarity=-0.121  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ..+......++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence            355666666666667667788999999999999999999999999999999999999999997 9999999988876553


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      ...+......                         ... ..++.++++.+++.+...+...+...+..++..    ..|+
T Consensus        87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~  137 (417)
T 2cfq_A           87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN  137 (417)
T ss_dssp             HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred             HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence            3222111000                         000 012233444444333333333333333332211    0155


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~  269 (605)
                      ..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            55666666788999999999999887 58999988765543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=1.9e-13  Score=145.90  Aligned_cols=178  Identities=15%  Similarity=0.131  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhcc--chHHHHHHHHHHH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTIY  146 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--GR~~~~~~~~~~~  146 (605)
                      +.++...+..++....++++..+++.|+++.+|++..+++++.+.+.++..++.++.|+++|| +  |||+.+.++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            457777888888888888999999999998899999999999999999999999999999999 5  8888888777665


Q ss_pred             H-HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      . ++.+++.+.       ++                   .+.+.+.+..++.|++.++..+...++..|.+|+++     
T Consensus       331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  379 (451)
T 1pw4_A          331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA-----  379 (451)
T ss_dssp             HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred             HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence            5 444444332       10                   245666777788899988888888999999999998     


Q ss_pred             hhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 007405          226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (605)
Q Consensus       226 ~r~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (605)
                       |++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus       380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999 999999999999999999999998888777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.35  E-value=2.8e-11  Score=128.55  Aligned_cols=165  Identities=10%  Similarity=0.011  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~  148 (605)
                      .++...+..++.....+++..+++.| +++.+|.+..+++...+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~  337 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA  337 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            35666666777777778888999999 8888899999999999999999999999999999997 999999999988888


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (605)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~  228 (605)
                      +.+++.+.                            .+... ++..++.|++.+...+...++..|.+|++       ++
T Consensus       338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~  381 (438)
T 3o7q_A          338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK  381 (438)
T ss_dssp             HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred             HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence            87776654                            23333 33447888999999999999999998854       45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHH
Q 007405          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGIS  272 (605)
Q Consensus       229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~  272 (605)
                      .+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.
T Consensus       382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            5555544 556999999999999999998 999888765554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.33  E-value=9.9e-12  Score=131.96  Aligned_cols=173  Identities=10%  Similarity=0.053  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      .+...+..++....++....+++.|+.+.++..   ....+...++..++..++.+++|+++||+ |||+++.++.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence            344444334444444455566888887766532   33445666666677788899999999997 99999988888777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.+++.+.                            .+.+.+++..++.+++.+...+....+.+|.+|++.      |
T Consensus       301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~  346 (417)
T 2cfq_A          301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S  346 (417)
T ss_dssp             HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            765555432                            234555566666777777666777889999999988      9


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       228 ~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +++.++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus       347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            999988 477788999999999999998888888888877777666655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.13  E-value=1.1e-10  Score=126.28  Aligned_cols=185  Identities=12%  Similarity=0.008  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH-----HHHHH
Q 007405           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI  145 (605)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~-----~~~~~  145 (605)
                      .+..++..++....++....+++.|+.+.++.+..+.+.......++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44555555666666666778889999998888877778888888888899999999999997 9886554     66666


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (605)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~  225 (605)
                      ..++.+++.+........+                   ..+...++++.++.|++.+...+...++..|.+|++.     
T Consensus       364 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-----  419 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSG-------------------KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-----  419 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCT-------------------TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred             HHHHHHHHHHHHHhcCCCC-------------------CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence            6666555544311000000                   0245666777788999999989999999999999999     


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (605)
Q Consensus       226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (605)
                       |+++.++++...++|..++|.+.+++.+. ++.+.|++.+++.+++.++.+...++
T Consensus       420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          420 -NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             -SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999998888764 66677777776666665555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.06  E-value=1.3e-08  Score=109.84  Aligned_cols=181  Identities=9%  Similarity=0.011  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (605)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~  153 (605)
                      .....++.....+....+..+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHH
Confidence            33333333333333344445666778888888877777777888899999999999997 99999999988888877766


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHH-HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHH
Q 007405          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (605)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  232 (605)
                      +......   .                    .....+. +..+..+++ .+..+....+.+|.+|++.      |+++.+
T Consensus       360 ~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g  409 (491)
T 4gc0_A          360 GTAFYTQ---A--------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALA  409 (491)
T ss_dssp             HHHHHTT---C--------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHH
T ss_pred             HHHHhcc---c--------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHH
Confidence            6542200   0                    1222222 222222233 3345677789999999999      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007405          233 FFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (605)
Q Consensus       233 ~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~  285 (605)
                      +.+....+++.+++.+...+.+      ..++.+.|++.+++.+++.+..++..||.+.
T Consensus       410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            9998889999888887766543      3455667888777777777777777776544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.86  E-value=1.3e-09  Score=113.39  Aligned_cols=164  Identities=12%  Similarity=-0.097  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH-HH
Q 007405           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL  147 (605)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~-~~  147 (605)
                      +.++...+..++.....+++..+++.|+++.+|.+..+++.......++..++.++.|+++||+ ||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            3466677777777888888888999999998999999999999999999999999999999997 872  2333322 22


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      ++.........     ++                   .+.+.+++..++.|++.+...+...++..|.+| ++      |
T Consensus       276 ~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~  324 (375)
T 2gfp_A          276 AGLLMWIPDWF-----GV-------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A  324 (375)
T ss_dssp             TSSSSSHHHHH-----HH-------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred             HHHHHHHHhhh-----cc-------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence            22221111100     00                   245566677788899999999999999999998 66      9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 007405          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (605)
Q Consensus       228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~  266 (605)
                      ++..++.+...++|..++|.+.+.+.+..+|...+++.+
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999999988778887776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.21  E-value=8.9e-07  Score=96.17  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ch-----
Q 007405          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW-----  258 (605)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~--gw-----  258 (605)
                      +.+.++++.++.|++.+...+...++..|.+|++.      |++++++++...++|..++|.+.+++.+..  +|     
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            45566777788999999999999999999999999      999999999999999999999999987643  23     


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhcc
Q 007405          259 ----GSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       259 ----~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                          +..|++.+++.+++.++++...+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                22355555555555554444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	605
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.31

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=9.3e-24  Score=222.86  Aligned_cols=160  Identities=11%  Similarity=0.041  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007405           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (605)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  169 (605)
                      ..+.+++. ++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++++....         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            44556765 5899999999999999999999999999999997 999999999999999988887653210         


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007405          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (605)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~  249 (605)
                                     .+...+++.|++.|++.|...+...++++|.+|+++      |++.+++++.+.++|..++|.++
T Consensus       114 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~  172 (447)
T d1pw4a_         114 ---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF  172 (447)
T ss_dssp             ---------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             ---------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhh
Confidence                           356788999999999999999999999999999998      99999999999999999999998


Q ss_pred             HHHHhhh-chHHHHHHHHHHHHHHHHHHHHhcc
Q 007405          250 VYIQMEH-GWGSAFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       250 ~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      +.+.... +|++.|++.+++.++..++.+...+
T Consensus       173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             hhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            8876654 6999998887776665555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.4e-22  Score=205.02  Aligned_cols=382  Identities=11%  Similarity=-0.048  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (605)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~  149 (605)
                      ..|.+.+..++..+....+.+.++.|+++++|+|.++.+++.+++.++..++.++.|+++||+ |||++++++.++..++
T Consensus         8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            477777778888888777788899999999999999999999999999999999999999997 9999999999888888


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhH
Q 007405          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (605)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  229 (605)
                      ...+.+....+                        ......++.+.+.+.+.+...........+..+++.    ..+..
T Consensus        87 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  138 (417)
T d1pv7a_          87 FAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNF  138 (417)
T ss_dssp             HHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSC
T ss_pred             HHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHH
Confidence            77777652100                        111122233333333333333333333322222221    11445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhcc
Q 007405          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (605)
Q Consensus       230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  309 (605)
                      ..+........+..++|.+++.+.+. +|+..+........+..++..+..++.+..++..+..                
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  201 (417)
T d1pv7a_         139 EFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------  201 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------
T ss_pred             HHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------
Confidence            55666667788888999999888765 4555555544444444433333333221111111000                


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHH
Q 007405          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (605)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  389 (605)
                            .    +               ..+.......                    .+....+...............+
T Consensus       202 ------~----~---------------~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~  236 (417)
T d1pv7a_         202 ------G----A---------------NHSAFSLKLA--------------------LELFRQPKLWFLSLYVIGVSCTY  236 (417)
T ss_dssp             ------H----S---------------CCCCCCHHHH--------------------HHHTTSSHHHHHHHHHHHHHHHH
T ss_pred             ------h----h---------------hccccccccc--------------------ccccccccccchhhhhHHHHHHH
Confidence                  0    0               0000000000                    00000000000000000000000


Q ss_pred             HHHhhhhhHHHHHH---hhhccCC-------CC----eeeCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007405          390 VILTEFLTLSVQQA---YTMNTHM-------GK----LKLPV-TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  454 (605)
Q Consensus       390 ~~~~~~~~~~~~~~---~~~~~~~-------~~----~~ip~-~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~  454 (605)
                      .........+....   ...+...       ..    ..... .+..+|.+..+.+.++.++.+++++.+...       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------  309 (417)
T d1pv7a_         237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------  309 (417)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------
Confidence            00000000000000   0000000       00    00000 233344555566667766666666555432       


Q ss_pred             hhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHH-HHHhhHHHHHHHHHHHHhh
Q 007405          455 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSIIK  533 (605)
Q Consensus       455 ~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~l~~~l~~~i~  533 (605)
                                      .+.++++...++.+++.+...+...+++.+.+|++.||.+.|+. ++...+|..+++.+.+.+.
T Consensus       310 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~  373 (417)
T d1pv7a_         310 ----------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             ----------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            45667777888899999999999999999999999999999985 5677899999999999887


Q ss_pred             cccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhcee
Q 007405          534 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  583 (605)
Q Consensus       534 ~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~  583 (605)
                      +..|                  +...|++.+++.++..++.+++.++.++
T Consensus       374 ~~~g------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         374 ESIG------------------FQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHC------------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHC------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            7544                  4567888888888887777777654443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=4.7e-13  Score=139.62  Aligned_cols=181  Identities=15%  Similarity=0.064  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (605)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~  147 (605)
                      .+.++......++.....+++..+++.|+.+.++.+..+.+.....+.+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            34577777778888888889999999999999999999999999999999999999999999997 87654444433333


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (605)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r  227 (605)
                      +..+.......    .+.                   .+....++..++.|++.++..+....+..|.+|++.      |
T Consensus       327 ~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~  377 (447)
T d1pw4a_         327 LVTIATIVYWM----NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A  377 (447)
T ss_dssp             HHHHHHHHTTS----CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred             HHHHHHHHHHh----ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------H
Confidence            22222222110    011                   355666677778899888888899999999999998      9


Q ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405          228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (605)
Q Consensus       228 ~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (605)
                      +++.++.+...++ |..++|.+.+++.+.+||+..|++.+++.+++.++...
T Consensus       378 g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887776 56678999999999999999988877666555554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.3e-12  Score=130.30  Aligned_cols=145  Identities=10%  Similarity=0.040  Sum_probs=121.6

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 007405          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (605)
Q Consensus       102 ~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  181 (605)
                      .+....+.......++..++.++.+++.||+ |||+++.++.++..++.+...+.                         
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-------------------------  309 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA-------------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred             cchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-------------------------
Confidence            3445556677777888889999999999997 99999999999888888777764                         


Q ss_pred             ccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhchHH
Q 007405          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGS  260 (605)
Q Consensus       182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~~~~gw~~  260 (605)
                         .+.+.+++..++.|++.+...+...+++.|.+|++.      |++.+++.+ ....+|..++|.++|++.+..||+.
T Consensus       310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~  380 (417)
T d1pv7a_         310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG  380 (417)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence               456777778888999999999999999999999999      999999854 5677999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 007405          261 AFGALAIAMGISNMLFFIGTP  281 (605)
Q Consensus       261 ~f~~~~~~~~i~~~~~~~~~~  281 (605)
                      .|++.+++.++..++..+..+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         381 AYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999888777666666555444