Citrus Sinensis ID: 007415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
Protein Sequence
MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Secondary Structure (PSIPRED)
ccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHcccccccccccccEEcccEEEEcccccEEEccEEEEEEcccccccccccccccHHHHHHHHHHHcccccccEEEEccccHHcccccccccccccccccccccHHHHHHHHHccccEEEEccccccEEcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHcccccHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEccEEEEEcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccEEEEEcccccEEEEEEEcccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHccccEccccEEEEccccccHHHHHcccccHHHHHcccccccEEcccEEEEccccEEEEcEEEEEEEcccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHccccEEEEcccccEEEcccccccccccEEEEEEEcccccHHHcHEEEEEEccccccccHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHcccccccHHHHHHHHHHHHHcccccccccccccHcccccHHHHHHHHHHcccccccccccEEccccccccEEEEEEccEEEEEccccccccccEEEEEccccccHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHccccccEEEEEcccccEEEEEEcccccccHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mspprillCGDVLGRLNQLFKRVQSvnksagpfdavlcvgqffpdssELLDEFMNYvegrseipiptyfigdYGVGAAKVLLAASKnsanqgfkmdgfkvtdNLFWlkgsgnftlhGLSVAYLsgrqssegqqfgtysqDDVDALRALaeepgivdlfltnewpsgvtnkaAASDMLVgisdssntdsTVSELVAEIkpryhiagskgvfyarepysnvdaVHVTRFlglapvgnkekqkfihalsptpaatmsaadismktpnttlspytfldqgshskeaakrpsdsvsdsqywrydvsqkrqkhgggdgdkMCFKFiysgscprgekcnfrhdtdaREQCLRGVCLDFiikgkcekgpecsykhslqnddsqrthrsenasanrskecwfclsspsveshLIVSVGEYYycalpkgplvedhvlvipvehvpntistspECEKELGRFQNSLMMYYKNQGKEAVFFEWLskrgthanlqavpiptskaaAVQDIFNLAAEKLGFKFLatksskssdgrrsLRAQFdrncsffyvelpegtvlshlieenerfpaqFGREVLAGLLNIAdkadwrncmlgkeeETKMVEDFKKRFEAFDPNQ
Flexible Loop (DISEMBL)
MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAeikpryhiagskgvFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSkeaakrpsdsvsdsqywRYDVsqkrqkhgggdgdKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKcekgpecsykhslqnddsqrtHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHvpntistspecEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFlatksskssdgrrslRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Low Complexity Region (SEG)
MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Disordered region (IsUnstruct)
*****ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLS************Y**DDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVG***********SELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH****************************************************W****************DKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEK******************************ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLA**************AQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLG**********************
Disordered Region (DISOPRED)
*SPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAAS**********NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLD********************YWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC*************************KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLA*******DGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Disordered Region (DISEMBL)
MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISD********SELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQG****************SQYWRYDV**********DGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC*************************KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLAT***********LRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Disordered Region (DISPRO)
*SPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLD***************************************KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKG*********************************KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	604	2.2.26 [Sep-21-2011]
Q84WU9	596	Zinc finger CCCH domain-c	yes	no	0.981	0.994	0.712	0.0
Q69NK8	613	Zinc finger CCCH domain-c	yes	no	0.981	0.967	0.595	0.0
Q5RGJ5	544	CWF19-like protein 1 OS=D	yes	no	0.855	0.950	0.309	3e-73
Q8AVL0	540	CWF19-like protein 1 OS=X	N/A	no	0.849	0.95	0.321	2e-71
O16216	533	CWF19-like protein 1 homo	yes	no	0.841	0.953	0.297	6e-63
Q8CI33	537	CWF19-like protein 1 OS=M	yes	no	0.842	0.947	0.304	2e-58
Q69YN2	538	CWF19-like protein 1 OS=H	yes	no	0.847	0.951	0.303	3e-54
Q10414	561	CWF19-like protein mug161	yes	no	0.847	0.912	0.250	6e-42
Q5R8R4	538	CWF19-like protein 1 OS=P	yes	no	0.334	0.375	0.390	6e-38
A1Z8J0	545	CWF19-like protein 1 homo	yes	no	0.460	0.510	0.342	6e-36

>sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/602 (71%), Positives = 499/602 (82%), Gaps = 9/602 (1%)

Query: 4   PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
           PRILLCGD LGRLNQLFKRVQSV+KSAGPFDA++CVGQFFPDS E+LDEF++YVEGR+++
Sbjct: 3   PRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDSPEILDEFLDYVEGRAQV 62

Query: 64  PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG F+LHGLSVAYL
Sbjct: 63  PIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKFSLHGLSVAYL 122

Query: 124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDS 183
           SGRQSSE Q FG YSQDDVDALRALAEEPG VDLFLTNEWP+GVTN+AA SD+ VGISDS
Sbjct: 123 SGRQSSESQ-FGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAVSDIPVGISDS 181

Query: 184 SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH 243
           S +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK KQKF+H
Sbjct: 182 SCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLH 241

Query: 244 ALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQK 303
           ALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDSQYWRYDV  K
Sbjct: 242 ALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWRYDVP-K 297

Query: 304 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 363
           RQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKCEKGPEC
Sbjct: 298 RQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPEC 356

Query: 364 SYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV 422
           SYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCALPKG LV
Sbjct: 357 SYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLV 414

Query: 423 EDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQ 482
           EDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR +HANLQ
Sbjct: 415 EDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQ 474

Query: 483 AVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEG 542
            VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++     FYVELP+G
Sbjct: 475 VVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDG 534

Query: 543 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDP 602
           TVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+F+ FDP
Sbjct: 535 TVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFDP 594

Query: 603 NQ 604
            Q
Sbjct: 595 CQ 596

Arabidopsis thaliana (taxid: 3702)

>sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/606 (59%), Positives = 449/606 (74%), Gaps = 13/606 (2%)

Query: 5   RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF-PDSSELLD----EFMNYVEG 59
           RILL GD  GRL+QLFKRV SVN+S GPF A+LCVGQFF PD+ +       E  +Y+EG
Sbjct: 15  RILLAGDANGRLHQLFKRVTSVNQSTGPFHALLCVGQFFSPDAGDGDGGGGGEVADYLEG 74

Query: 60  RSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLS 119
           R+ +PIPTYF GDYG  A ++L  A+  S+ +GF   G ++  NLFWL+GS  FTLHGLS
Sbjct: 75  RAAVPIPTYFTGDYGPAAPRLLAKAA--SSARGFSPGGIQICPNLFWLRGSARFTLHGLS 132

Query: 120 VAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVG 179
           V YLSGR+   G   G YSQDDVDALRALAEEPGIVDLFLTNEWP+GV N    S+    
Sbjct: 133 VVYLSGRKGPGGP--GCYSQDDVDALRALAEEPGIVDLFLTNEWPAGVVNGVDTSNAPSQ 190

Query: 180 ISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQ 239
           ISD    D  V+ELVAEIKPRYHIAGSKGVFYAREPY +  A HVTRF+GLA VGNKEKQ
Sbjct: 191 ISDPHGYDPVVAELVAEIKPRYHIAGSKGVFYAREPYVSDSAAHVTRFIGLANVGNKEKQ 250

Query: 240 KFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYD 299
           KFIHA+SPTPA+TMS+ DI  + PNTTLSPY    +    +E  KRP++  +D QYWRYD
Sbjct: 251 KFIHAISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEETPKRPAED-ADLQYWRYD 309

Query: 300 VSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEK 359
           V  K+Q+HG   G+++CFKF  SGSCPRG KCN+RHD +ARE   R VC DF+ KGKCEK
Sbjct: 310 V--KKQRHGEAGGNRLCFKFTSSGSCPRGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEK 367

Query: 360 GPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKG 419
           GPEC + HSL ++ + R  +  +        CWFCLSSP VESHL++S+GE YYCAL KG
Sbjct: 368 GPECRFAHSLSDEGAVRDTKPRSERRRVESSCWFCLSSPDVESHLVISIGEGYYCALAKG 427

Query: 420 PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHA 479
           PLV +HVLVIPVEH  +T+    E E ELGR++++L  Y++ QGK A++FEW+S++  HA
Sbjct: 428 PLVPNHVLVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWVSQQSRHA 487

Query: 480 NLQAVPIPTSKAAAVQDIFNLAAEKLGFKF-LATKSSKSSDGRRSLRAQFDRNCSFFYVE 538
           NLQAVP+P SKA++V+ IF+LAA++LGF+F +      ++  R  LR++ D   S FYVE
Sbjct: 488 NLQAVPVPLSKASSVKKIFHLAAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVE 547

Query: 539 LPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFE 598
           LPEG+VL HL++ NE+FPAQFGREVLAGLL++AD+ADWRNC + KEEE +MV+DFK+ F 
Sbjct: 548 LPEGSVLLHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFR 607

Query: 599 AFDPNQ 604
            FDP +
Sbjct: 608 EFDPAE 613

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5RGJ5|C19L1_DANRE CWF19-like protein 1 OS=Danio rerio GN=cwf19l1 PE=2 SV=1

 Score =  276 bits (707), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 295/617 (47%), Gaps = 100/617 (16%)

Query: 3   PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE 62
           P R+L CGDV GR+N LF RV ++ K +G FD +LCVG FF  S E   E+  Y  G  +
Sbjct: 5   PLRVLACGDVEGRINALFNRVNAIQKKSGQFDLLLCVGDFFGSSPEAEAEWATYKSGAKK 64

Query: 63  IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFT-LHGLSVA 121
            PI T  +G           AAS+ +       DG ++ +N+  L   G FT   GL +A
Sbjct: 65  APIHTCILG-----------AASQETVKYFPSSDGCELAENITCLGRRGIFTGASGLQIA 113

Query: 122 YLSGRQS-SEGQQFGTYSQDDVDALRA-LAEEPGI--VDLFLTNEWPSGVTN--KAAASD 175
           Y+SGR++  E      ++  D+ AL A L        VD+ LT++WP GV     +  +D
Sbjct: 114 YVSGREAHQEPAPSHCFTPKDITALVAPLLSNSKFRGVDILLTSQWPRGVCQYGNSPETD 173

Query: 176 M-LVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLG 229
           M   G+S       ++++L  ++KPRYH AG +GV Y R PY N      +  HV+RF+ 
Sbjct: 174 MKFCGVS-------SIADLADKLKPRYHFAGLEGVHYERLPYRNHVVLQENTQHVSRFIA 226

Query: 230 LAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDS 289
           LA V N  K+K+++A +  P   M + ++  +  + T +PY  L                
Sbjct: 227 LATVNNPAKKKYLYAFNIIPMKNMDSTELVKQPQDVTENPYRKL---------------- 270

Query: 290 VSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCL 349
           + D +  R   S                                   TDA+E+       
Sbjct: 271 MKDGKKERQSASM----------------------------------TDAQEEPASQFFF 296

Query: 350 DFIIKGKCEKGPECSYKHSLQND-DSQRTHRSENASANRSKECWFCLSSPSVESHLIVSV 408
           D       +K P+  +    Q+D D    H+        +  CWFCL+SP VE HL++S+
Sbjct: 297 DL-----GQKNPQRQHGRKRQSDGDRPNQHKQPRRPPQPTGPCWFCLASPEVEKHLVISI 351

Query: 409 GEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVF 468
           G + Y AL KG L  DHVL++P+ H  + +  + E  +E+ +++++   + K++GK  V 
Sbjct: 352 GTHCYMALAKGGLTPDHVLLLPIGHYQSVVDLASEVVEEMEKYKSAFKKFCKSKGKRCVL 411

Query: 469 FEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRA 526
           FE  + R  H  LQAVP+P  K +   +++ F   AE+   + +   +         L+ 
Sbjct: 412 FE-RNYRSQHLQLQAVPVPMEKCSTEDIKEAFMTQAEEQQMELMEIPA------HTDLKQ 464

Query: 527 QFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--GLLNIADKADWRNCMLGKE 584
                  +FYVEL  G  L + I++N  FP QFGREVLA   ++NI  ++DWR C + +E
Sbjct: 465 IAPPGTPYFYVELDTGDKLFYRIKKN--FPLQFGREVLASEAVMNIPMRSDWRECKISRE 522

Query: 585 EETKMVEDFKKRFEAFD 601
           EE    +  +  +E FD
Sbjct: 523 EEEDQAKQVRSDYEPFD 539

Danio rerio (taxid: 7955)

>sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1

 Score =  270 bits (691), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 197/613 (32%), Positives = 299/613 (48%), Gaps = 100/613 (16%)

Query: 5   RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIP 64
           R+L CGDV GR + LF RV+ + K +G FD +LCVG FF  S E    +  Y  G  + P
Sbjct: 7   RVLTCGDVYGRFDVLFNRVRVIQKKSGQFDMLLCVGSFFGTSPESQTHWDEYKSGAKKAP 66

Query: 65  IPTYFIGDYGVGAAKVLLAASKNSANQGFK-MDGFKVTDNLFWLKGSGNFT-LHGLSVAY 122
           I TY +G            A+     + FK +DG ++  N+ +L   G FT   GL +AY
Sbjct: 67  IQTYVLG------------ANNQETVKHFKDVDGCELAANITYLGRKGLFTGASGLQIAY 114

Query: 123 LSG-RQSSEGQQFGTYSQDDVDALR-ALAEEPGI--VDLFLTNEWPSGVTNKAAASDMLV 178
           LSG   SSE      ++  DV +L+ +L        VD+ LT+ WP  V+N   A   L 
Sbjct: 115 LSGIESSSEPAPAYCFTAKDVTSLKMSLMSNSKFKGVDILLTSSWPKDVSNYGNA---LP 171

Query: 179 GISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPV 233
             +      + +S L   +KPRYH A  +G  Y R PY N      +A HV+RF+ LA V
Sbjct: 172 NEASKKCGSALISNLAFNLKPRYHFAALEGENYERLPYRNHLVLQENAQHVSRFISLASV 231

Query: 234 GNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDS 293
           GN +K+K+I+A +  P +    AD+                         K+P D V+++
Sbjct: 232 GNLDKKKYIYAFNIVPMSLTDIADL------------------------VKQPLD-VTEN 266

Query: 294 QYWRYDVSQKRQK-HGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFI 352
            Y + D    + K +   + ++   +F +  + P+G+K      TD              
Sbjct: 267 PYRKSDKDTPKSKGNKSAEEEEPTQQFFFDLNKPQGKK----RQTDG------------- 309

Query: 353 IKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYY 412
            KG  +   +   KH                    +  CWFCL+SP VE HL+VS+G+  
Sbjct: 310 -KGGRQSQAKQPRKH-----------------PQPTGPCWFCLASPEVEKHLVVSIGDNC 351

Query: 413 YCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWL 472
           Y AL KG L+ DHVL++P+ H  +T+  S +  KE+ +++ +L  ++K +GK  V FE  
Sbjct: 352 YVALAKGGLMSDHVLILPIGHYQSTVDLSSDVVKEVEQYKAALRTFFKTKGKRYVMFER- 410

Query: 473 SKRGTHANLQAVPIPTS--KAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDR 530
           + +  H  LQ VP+P S      +++ F L A++ G + L     + SD ++  +     
Sbjct: 411 NYKSQHLQLQVVPLPLSCCTTEDIKETFILQAQEQGMELLEI--PEHSDIKQIAQP---- 464

Query: 531 NCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--GLLNIADKADWRNCMLGKEEETK 588
              +FYVEL  G  L H I+++  FP QFGREVLA   +LNI  +ADW++C   + EE  
Sbjct: 465 GTPYFYVELDSGEKLFHRIKKH--FPLQFGREVLASEAILNIPTRADWKDCKSSRAEEED 522

Query: 589 MVEDFKKRFEAFD 601
           + + F+  FE FD
Sbjct: 523 LTKTFRDAFEPFD 535

Xenopus laevis (taxid: 8355)

>sp|O16216|C19L1_CAEEL CWF19-like protein 1 homolog OS=Caenorhabditis elegans GN=F17A9.2 PE=3 SV=2

 Score =  242 bits (618), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 181/608 (29%), Positives = 277/608 (45%), Gaps = 100/608 (16%)

Query: 5   RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIP 64
           +IL CGDV G   +L K++ +  K  GPFD++ CVG+FF D  +  ++ +N   G  E P
Sbjct: 7   KILCCGDVNGNFVELIKKISTTEKKNGPFDSLFCVGEFFGDDDDSNEKVIN---GNIEFP 63

Query: 65  IPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYL 123
           IPTY +G             +    +  +  +  + + NL +L   G   T  GL +AYL
Sbjct: 64  IPTYILG------------PANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYL 111

Query: 124 SGRQSSEGQQFGTYSQDDVDALR-ALAEEPGI--VDLFLTNEWPSGVTNKAAASDMLVGI 180
           SG + S  +    + + DV+ L   L  + G    D+ LT+ WP+ +   +         
Sbjct: 112 SGVEGSS-KDLSCFDKADVEELLIPLGTQVGFSGTDILLTSVWPADIARHSHNQP----- 165

Query: 181 SDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPVGN 235
           S        +S+L A +KPRYH AG  GV Y R+PY N       A H TRF+GLA +GN
Sbjct: 166 SKPQPGSVLLSKLAAHLKPRYHFAGL-GVHYERQPYRNHRVLLEPARHTTRFIGLAAIGN 224

Query: 236 KEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQY 295
            EKQK+++A +  P   M   +++ + PN +  PY  L +   +KE   R + +    + 
Sbjct: 225 PEKQKWLYACNVKPMRKMEKEELTAQPPNASEFPYRELLEEIAAKETLSRMNGNGQRPEG 284

Query: 296 WRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKG 355
            +Y       + G G+G K                   RH+    +             G
Sbjct: 285 SQYRFEMGGAEDGAGNGRK-------------------RHNDGGND-------------G 312

Query: 356 KCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCA 415
              K P       L N D+++                          HL+V++G   Y A
Sbjct: 313 PRNKQPVGPCWFCLSNVDAEK--------------------------HLVVAIGNKCYAA 346

Query: 416 LPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKR 475
           +PKGPL EDHV+V+ V H+ + +S   E   E+ +F+++  +    QGK  V FE  + R
Sbjct: 347 MPKGPLTEDHVMVLSVGHIQSQVSAPVEVRDEIEKFKSAFTLMANKQGKALVTFER-NFR 405

Query: 476 GTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFF 535
             H  +Q V I  S + A++  F  AA   GF+ +     +      SL    +  C +F
Sbjct: 406 TQHLQVQMVMIDKSSSKALKSSFTTAAACAGFELVTMGPDE------SLLDMVNEGCPYF 459

Query: 536 YVELPEGTVLSHLIEENERFPAQFGREVLAG--LLNIADKADWRNCMLGKEEETKMVEDF 593
             ELP+G+ L       + FP  FGREVLA   +L+  DK DW+ C+L KE+E ++V   
Sbjct: 460 VAELPDGSKL--FTRSMKGFPLHFGREVLASTPILDCEDKVDWKACVLAKEKEVELVNKL 517

Query: 594 KKRFEAFD 601
           K  F+ FD
Sbjct: 518 KSDFKPFD 525

Caenorhabditis elegans (taxid: 6239)

>sp|Q8CI33|C19L1_MOUSE CWF19-like protein 1 OS=Mus musculus GN=Cwf19l1 PE=2 SV=2

 Score =  227 bits (579), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 282/618 (45%), Gaps = 109/618 (17%)

Query: 3   PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE 62
           P R+L CGDV G+ + LF RV+++ K +G FD +LCVG FF  + +   E+  Y  G  +
Sbjct: 5   PLRLLACGDVEGKFDVLFNRVRTIQKKSGNFDLLLCVGNFFGSAQDA--EWEEYKTGNKK 62

Query: 63  IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFT-LHGLSVA 121
            PI TY +G           A ++ +AN     DG ++ +N+ +L   G FT   GL + 
Sbjct: 63  APIQTYVLG-----------ANNEETANYFQGADGCELAENITYLGRKGVFTGSSGLQIV 111

Query: 122 YLSGRQS-SEGQQFGTYSQDDVDALRAL---AEEPGIVDLFLTNEWPSGVTNKAAASDML 177
           YLSG +S  E     ++S  DV +LR +   A +   VD+ LT+ WP  V +   +S   
Sbjct: 112 YLSGTESLDEPVPAHSFSPKDVSSLRTMLCSASQFKGVDILLTSPWPKYVGSFGNSS--- 168

Query: 178 VGISDSSNTDST-VSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLA 231
            G  D+ N  S  +S L   +KPRYH A  +  +Y R PY N       A H TRF+ LA
Sbjct: 169 -GEVDTKNCGSALISSLAVSLKPRYHFAALEKSYYERLPYRNHVVLQESAQHATRFIALA 227

Query: 232 PVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVS 291
            VGN EK+K+++A S  P   M+ A++  + P+ T +PY   D G  +      P+    
Sbjct: 228 NVGNPEKKKYLYAFSIVPMKLMAVAELVKQPPDVTENPYR--DSGKQAAGGKHIPAPQEE 285

Query: 292 DSQYWRYDVSQK--RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCL 349
            +  + +D+S+K  R++   G   +                C F                
Sbjct: 286 SACQFFFDLSEKQGRKRPSTGRDTRPPHAKQPRKPPQPPGPCWF---------------- 329

Query: 350 DFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSV-ESH-LIVS 407
                  C   PE   KH +                N    C+  L+   + + H LI+ 
Sbjct: 330 -------CLASPEVE-KHLV---------------VNIGTHCYLALAKGGLSDDHVLILP 366

Query: 408 VGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAV 467
           +G Y         +VE                   E EK    ++ +L  ++K++GK  V
Sbjct: 367 IGHYQSVVELSAEVVE-------------------EVEK----YKATLQRFFKSRGKRCV 403

Query: 468 FFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFKFLATKSSKSSDGRRSLR 525
            FE  + R  H  LQ +P+P S  A   ++D F   A++   + L     + SD ++  +
Sbjct: 404 LFE-RNYRSHHLQLQVIPVPLSCCATDDIKDAFITQAQEQQIELLEI--PEHSDIKQIAQ 460

Query: 526 AQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--GLLNIADKADWRNCMLGK 583
                  ++FYVEL  G  L H I++N  FP QFGREVLA   +LNI +KADWR C   K
Sbjct: 461 P----GAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEAILNIPEKADWRQCQTSK 514

Query: 584 EEETKMVEDFKKRFEAFD 601
           +EE  +   F+K FE FD
Sbjct: 515 DEEEALARRFRKDFEPFD 532

Mus musculus (taxid: 10090)

>sp|Q69YN2|C19L1_HUMAN CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2

 Score =  213 bits (543), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 187/616 (30%), Positives = 280/616 (45%), Gaps = 104/616 (16%)

Query: 3   PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE 62
           P R+L CGDV G+ + LF RVQ++ K +G FD +LCVG FF  + +   E+  Y  G  +
Sbjct: 5   PLRLLACGDVEGKFDILFNRVQAIQKKSGNFDLLLCVGNFFGSTQDA--EWEEYKTGIKK 62

Query: 63  IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFT-LHGLSVA 121
            PI TY +G           A ++ +       DG ++ +N+ +L   G FT   GL + 
Sbjct: 63  APIQTYVLG-----------ANNQETVKYFQDADGCELAENITYLGRKGIFTGSSGLQIV 111

Query: 122 YLSGRQSSEGQQFG-TYSQDDVDALRAL---AEEPGIVDLFLTNEWPSGVTNKAAASDML 177
           YLSG +S      G ++S  DV +LR +     +   VD+ LT+ WP  V N   +S   
Sbjct: 112 YLSGTESLNEPVPGYSFSPKDVSSLRMMLCTTSQFKGVDILLTSPWPKCVGNFGNSS--- 168

Query: 178 VGISDSSNTDST-VSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLA 231
            G  D+    S  VS L   +KPRYH A  +  +Y R PY N      +A H TRF+ LA
Sbjct: 169 -GEVDTKKCGSALVSSLATGLKPRYHFAALEKTYYERLPYRNHIILQENAQHATRFIALA 227

Query: 232 PVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVS 291
            VGN EK+K+++A S  P   M AA++  + P+ T +PY    Q +   +    P +  +
Sbjct: 228 NVGNPEKKKYLYAFSIVPMKLMDAAELVKQPPDVTENPYRKSGQEASIGKQILAPVEESA 287

Query: 292 DSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDF 351
              ++  +  Q R++   G   K         S P        H    R+         F
Sbjct: 288 CQFFFDLNEKQGRKRSSTGRDSK---------SSP--------HPKQPRKPPQPPGPCWF 330

Query: 352 IIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSV-ESH-LIVSVG 409
                C   PE   KH +                N    C+  L+   + + H LI+ +G
Sbjct: 331 -----CLASPEVE-KHLV---------------VNIGTHCYLALAKGGLSDDHVLILPIG 369

Query: 410 EYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFF 469
            Y         +VE+      VE    T          L RF       +K++GK  V F
Sbjct: 370 HYQSVVELSAEVVEE------VEKYKAT----------LRRF-------FKSRGKWCVVF 406

Query: 470 EWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQ 527
           E  + +  H  LQ +P+P S +    ++D F   A++   + L     + SD ++  +  
Sbjct: 407 E-RNYKSHHLQLQVIPVPISCSTTDDIKDAFITQAQEQQIELLEI--PEHSDIKQIAQP- 462

Query: 528 FDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--GLLNIADKADWRNCMLGKEE 585
                ++FYVEL  G  L H I++N  FP QFGREVLA   +LN+ DK+DWR C + KE+
Sbjct: 463 ---GAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEAILNVPDKSDWRQCQISKED 517

Query: 586 ETKMVEDFKKRFEAFD 601
           E  +   F+K FE +D
Sbjct: 518 EETLARRFRKDFEPYD 533

Homo sapiens (taxid: 9606)

>sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug161 PE=1 SV=1

 Score =  172 bits (436), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 161/642 (25%), Positives = 263/642 (40%), Gaps = 130/642 (20%)

Query: 1   MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGR 60
           + P  +L+ G   GR+ +  + +  ++K  G F   +C+G  F        + +     +
Sbjct: 7   LKPADVLVIGSADGRVIEAIEYIADLHKQHG-FKFAICLGNLFSHKRTTSADVVKLKNEK 65

Query: 61  SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLS 119
            ++PIP YF    GVG A +       S      M G +V  NLF +   G   T +  +
Sbjct: 66  VKVPIPVYF----GVGTAGL-----PESIISHMAMYGPEVAPNLFCMGICGFMKTFYKFT 116

Query: 120 VAYLSGRQSSEG-----QQF------GTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVT 168
           +A L G  + E      ++F        + + DV  L          D+  ++EWP  V 
Sbjct: 117 IAQLGGSYNEEKYYQPPEKFEQSLNEKCFHRSDVQKLSKRC------DILFSSEWPEDVQ 170

Query: 169 NKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHV---- 224
             +   +  +           ++ L A   P+Y       V+Y REPY N  A++V    
Sbjct: 171 ENSTLPERKL-----PKGCMPLAALAANCMPQYFFVPGP-VYYEREPYKNSAAINVNTGT 224

Query: 225 -TRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAA 283
            T F+ LAP  N + +KF +A +  P   ++   +    PN T SP+       H     
Sbjct: 225 VTHFVALAPFKNSKNEKFSYAFTLYP---LTTEYMQPAPPNCTASPF------EHRPIPL 275

Query: 284 KRPS-DSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQ 342
           KR S D +   Q  ++  S+                 ++          N  H +++   
Sbjct: 276 KRASEDQIIPQQTNKFHKSKSSTA-------------LFKSKKDSSSSLNKMHKSES--- 319

Query: 343 CLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASA---NRSK----ECWFCL 395
                                   HS  N+     H+SE+ ++    RSK     C+FCL
Sbjct: 320 ------------------------HSALNN----LHKSESGTSLNNRRSKVGPGSCFFCL 351

Query: 396 SSPSVESHLIVSVGEYYYCALPKGPLVED-----------HVLVIPVEHVPNTISTSPEC 444
           S+P+V  HLIV++G   Y ALPKGPL              HVL+IP+ H  + +ST  + 
Sbjct: 352 SNPNVALHLIVAIGNEAYMALPKGPLTTTASNTPALASSGHVLIIPIAHA-SALSTLSDT 410

Query: 445 E-----KELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN 499
                  E+ RF+ ++   Y     +A+ +E     G H + Q +PIP   +  ++ +F 
Sbjct: 411 SYEKTLNEMNRFRKAVTDMYNACDSDALVYEISRANGVHLHWQMIPIPKISSHRIESVFL 470

Query: 500 LAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQF 559
             A++ G+ F            R +        ++F V LP G +L H ++  ERF  QF
Sbjct: 471 EMAKEAGYDF----------EERDVEPH---ELNYFRVFLPSGKILIHRLQLRERFDLQF 517

Query: 560 GREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
           GR   A +L + D+ DWR C+  ++EE    E FK  F+ +D
Sbjct: 518 GRRAAAKILGLEDRVDWRKCVQTEDEEKAESEAFKMCFKPYD 559

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1

 Score =  159 bits (402), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 13/215 (6%)

Query: 391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 450
           CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H  + +  S E  +E+ +
Sbjct: 328 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 387

Query: 451 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 508
           ++ +L  ++K++GK  V FE  + +  H  LQ +P+P S  A   ++D F   A++   +
Sbjct: 388 YKATLRRFFKSRGKRCVVFE-RNYKSHHLQLQVIPVPVSCCATDDIKDAFITQAQEQQIE 446

Query: 509 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--G 566
            L     + SD ++  +       ++FYVEL  G  L H I++N  FP QFGREVLA   
Sbjct: 447 LLEI--PEHSDIKQIAQP----GAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 498

Query: 567 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
           +LN+ DK+DWR C + KE+E  +   F+K FE +D
Sbjct: 499 ILNVPDKSDWRQCQISKEDEETLARCFRKDFEPYD 533

Pongo abelii (taxid: 9601)

>sp|A1Z8J0|C19L1_DROME CWF19-like protein 1 homolog OS=Drosophila melanogaster GN=CG7741 PE=2 SV=1

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 161/330 (48%), Gaps = 52/330 (15%)

Query: 5   RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIP 64
           +IL+ GDV GR  QLF+RV+ VNK AGPF+ + CVG FF +  +  +E + Y  G   I 
Sbjct: 27  KILVVGDVRGRFKQLFQRVEQVNKKAGPFEILCCVGDFFGEDKQ-NEELIAYKNGFKHIT 85

Query: 65  IPTYFIGDYGVGAAKVLLAASKNSANQGFK--MDGFKVTDNLFWLKGSGNFTL-HGLSVA 121
           +PTY +G             ++    + F+   DG ++  NL +L   G +TL  G+ +A
Sbjct: 86  VPTYILG------------PNQREHEKYFENLTDG-EICTNLTYLGRRGVYTLSSGVKIA 132

Query: 122 YLSGRQS-----SEGQQFGTYSQDDVDALR-------ALAEEPGIVDLFLTNEWPSGVTN 169
           YLSG ++     S G +   +++ DV A+R         + E   VD+ LT++WP G+  
Sbjct: 133 YLSGLEAQGTADSAGSEH-EFTKADVIAVRNSCLVSKNCSTEYRGVDVLLTSQWPFGMQE 191

Query: 170 KAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY-----SNVDAVHV 224
           K  A+               VS L  EIKPRYH     G  Y   P+             
Sbjct: 192 KENAT-----------ASKLVSFLCREIKPRYHFCAINGTHYESAPFRMPKDETTQFELC 240

Query: 225 TRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAK 284
           TRF+ LA VGN EK K+I+ALS  P       D++ KT N    P+  LD G      A 
Sbjct: 241 TRFISLAEVGNAEKAKYIYALSLKPVDKSRLLDLAQKTTNEIPCPFIGLDLG-----GAI 295

Query: 285 RPSDSVSDSQYWRYDVSQKRQKHGGGDGDK 314
             +DS  + QY+ YD+   R+K  GGD +K
Sbjct: 296 GKNDSSENRQYF-YDMDGGRRKRQGGDNNK 324

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
359484480	607	PREDICTED: zinc finger CCCH domain-conta	1.0	0.995	0.742	0.0
255546111	606	nucleic acid binding protein, putative [	0.998	0.995	0.733	0.0
449435870	606	PREDICTED: zinc finger CCCH domain-conta	1.0	0.996	0.740	0.0
224112144	606	predicted protein [Populus trichocarpa]	0.986	0.983	0.734	0.0
297738661	593	unnamed protein product [Vitis vinifera]	0.976	0.994	0.719	0.0
356547875	601	PREDICTED: zinc finger CCCH domain-conta	0.990	0.995	0.711	0.0
145362692	596	zinc finger CCCH domain-containing prote	0.981	0.994	0.712	0.0
297796575	603	hypothetical protein ARALYDRAFT_495780 [	0.981	0.983	0.704	0.0
8777430	593	unnamed protein product [Arabidopsis tha	0.976	0.994	0.704	0.0
356564790	552	PREDICTED: zinc finger CCCH domain-conta	0.837	0.916	0.735	0.0

>gi|359484480|ref|XP_002279554.2| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Vitis vinifera]

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/607 (74%), Positives = 523/607 (86%), Gaps = 3/607 (0%)

Query: 1   MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGR 60
           M+PPRILLCGDVLGRLNQL KR+ SVNKSAGPFDAVLCVGQFFPDS E L EFM+Y+EGR
Sbjct: 1   MAPPRILLCGDVLGRLNQLVKRILSVNKSAGPFDAVLCVGQFFPDSPERLLEFMDYIEGR 60

Query: 61  SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSV 120
           S+IP+PTYFIGDYG+GAAKVL AASK+SAN GFKMDG ++ DNL+WLKGSG FTLHGLSV
Sbjct: 61  SQIPLPTYFIGDYGIGAAKVLSAASKDSANLGFKMDGLRICDNLYWLKGSGKFTLHGLSV 120

Query: 121 AYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGI 180
            Y+SGR+S +GQQFG YSQDDVDALRALA+E GIVDLFLTNEWPSGVT  A  S++  GI
Sbjct: 121 VYISGRRSLDGQQFGKYSQDDVDALRALADESGIVDLFLTNEWPSGVTKGAVTSNIPPGI 180

Query: 181 SDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQK 240
           SDSS  DS +SELV EIKPRYHIAG+KG+FY REPYSN+DAVHVTRFLGLAPVGNK+KQK
Sbjct: 181 SDSSGCDSAISELVGEIKPRYHIAGTKGIFYDREPYSNLDAVHVTRFLGLAPVGNKDKQK 240

Query: 241 FIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDV 300
           FIHA+SP PA+TMS+A+ISMK PNTTL PY  +++ + + +A KRPSDS+SD+QYWRYDV
Sbjct: 241 FIHAISPIPASTMSSAEISMKPPNTTLFPYKIIEETAPTNQATKRPSDSISDTQYWRYDV 300

Query: 301 SQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKG 360
           SQKRQKHG GDGDK+CFKF+ SGSCPRG KCNF HDT+AREQ +RGVC DFI KGKCE+G
Sbjct: 301 SQKRQKHGAGDGDKLCFKFVSSGSCPRGNKCNFLHDTEAREQYMRGVCFDFINKGKCERG 360

Query: 361 PECSYKHSLQNDD---SQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALP 417
           P+C++KHSLQ++D   + R   SENA ++RSK CWFCLSSP VESHLI+S+GE YYCAL 
Sbjct: 361 PDCNFKHSLQDEDEGFASRRSGSENAKSSRSKRCWFCLSSPDVESHLIISIGESYYCALA 420

Query: 418 KGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGT 477
           KGPLVED VLVIPVEH  NT+S  PECE EL RFQ SL MY++ QGKE VFFEW+ KRGT
Sbjct: 421 KGPLVEDQVLVIPVEHSANTLSLPPECEIELDRFQKSLKMYFRTQGKEVVFFEWIFKRGT 480

Query: 478 HANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYV 537
           HAN+QAVPIP S+A+AV++IF LAAEKLGF+F+ TKS+  S+GR+SLRAQFD   SFFYV
Sbjct: 481 HANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLRAQFDDKISFFYV 540

Query: 538 ELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRF 597
           ELP+GT+LSH IE+NE+FP QFGREVLAGLLN+AD+ADWRNC   KE+E KM E FK +F
Sbjct: 541 ELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKEDEMKMAEVFKNQF 600

Query: 598 EAFDPNQ 604
           + FDP Q
Sbjct: 601 KKFDPYQ 607

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546111|ref|XP_002514115.1| nucleic acid binding protein, putative [Ricinus communis] gi|223546571|gb|EEF48069.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/607 (73%), Positives = 526/607 (86%), Gaps = 4/607 (0%)

Query: 1   MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGR 60
           M+PPRILLCGDVLGRLNQL+KRVQSVNKSAGPFDA+ CVGQFFP SSE L+EFM+Y++GR
Sbjct: 1   MAPPRILLCGDVLGRLNQLYKRVQSVNKSAGPFDALFCVGQFFPASSEQLEEFMDYIDGR 60

Query: 61  SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSV 120
           S IP+PTYFIGDYGV A KVL AASKN A  GFKMDGF+++DNLFWLKGSG F LHGLS+
Sbjct: 61  SHIPLPTYFIGDYGVAAPKVLSAASKNHAKLGFKMDGFEISDNLFWLKGSGKFILHGLSI 120

Query: 121 AYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGI 180
           AYLSGRQS++GQQ+GTYSQDD DALRA+AEEPG+VDLFLTNEWPSGVTN+A+ SD+  GI
Sbjct: 121 AYLSGRQSADGQQYGTYSQDDADALRAMAEEPGVVDLFLTNEWPSGVTNRASISDIPTGI 180

Query: 181 SDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQK 240
           SDS  +DSTVSELVAEIKPRYHIAG+KGVF+AREPYSN DAVHVTRFLGLA VGNK+KQK
Sbjct: 181 SDSVGSDSTVSELVAEIKPRYHIAGTKGVFFAREPYSNSDAVHVTRFLGLASVGNKDKQK 240

Query: 241 FIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDV 300
           FIHA+SPTP +TM++A+ISMK  NTTLSPYTF++Q +  KE  KRPSDS+SDSQYWRYDV
Sbjct: 241 FIHAISPTPGSTMTSAEISMKPSNTTLSPYTFIEQAAAPKEGTKRPSDSMSDSQYWRYDV 300

Query: 301 SQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKG 360
           SQKR +  G DGDK+CFKF++SGSCPR EKC+F HD DAREQ  RGVC+DF++KGKCE+G
Sbjct: 301 SQKRHR-TGADGDKLCFKFVFSGSCPREEKCHFLHDMDAREQYSRGVCIDFLVKGKCERG 359

Query: 361 PECSYKHSLQNDDSQRTHRS---ENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALP 417
           P+C++KH+L ++    +HR    ENA+ NRSKECWFCLSSP VESHLI+S+GE YYCAL 
Sbjct: 360 PDCNFKHNLLSEGESYSHRRRGFENANTNRSKECWFCLSSPGVESHLIISIGENYYCALA 419

Query: 418 KGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGT 477
           KGPLV+DH+L++P+EH PNT+S   ECE EL R + SL +YY  QGKE + FEW SKRGT
Sbjct: 420 KGPLVQDHILLVPIEHSPNTLSLPQECESELVRLRKSLKLYYNKQGKETILFEWASKRGT 479

Query: 478 HANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYV 537
           HANLQAVP+P+S+AAAVQDIFN+AAEKLGFKF+  K + +SDGR+ LR QFDRN SFFYV
Sbjct: 480 HANLQAVPVPSSRAAAVQDIFNMAAEKLGFKFVTMKFNNNSDGRKWLRTQFDRNYSFFYV 539

Query: 538 ELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRF 597
           ELP+GTVLSH ++ENE FPAQFGREVLAGLLN+ ++ADWR C L KEEETKM+++ KK+F
Sbjct: 540 ELPDGTVLSHSVKENESFPAQFGREVLAGLLNMPERADWRTCTLSKEEETKMIDELKKQF 599

Query: 598 EAFDPNQ 604
           E  +P +
Sbjct: 600 EELNPAE 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435870|ref|XP_004135717.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Cucumis sativus] gi|449489882|ref|XP_004158448.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Cucumis sativus]

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/606 (74%), Positives = 515/606 (84%), Gaps = 2/606 (0%)

Query: 1   MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGR 60
           MSPPRILLCGDV GRLNQL+KRV SVNKSAGPFD +LCVGQFFPDS++ LDEFM+YVEGR
Sbjct: 1   MSPPRILLCGDVFGRLNQLYKRVVSVNKSAGPFDVLLCVGQFFPDSTDQLDEFMDYVEGR 60

Query: 61  SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSV 120
           S IP+ TYFIGDYGVGAAKVLLA+SK+SANQGFKMDG K+  NL WLKGSG FTLHGLSV
Sbjct: 61  SVIPLSTYFIGDYGVGAAKVLLASSKDSANQGFKMDGLKICANLHWLKGSGKFTLHGLSV 120

Query: 121 AYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGI 180
           AYLSGR SS+G  FGTY+QDDVDALRA+AEEPG+VDLFL+NEWP+ VTN+   SD+  G+
Sbjct: 121 AYLSGRCSSDGLPFGTYTQDDVDALRAIAEEPGVVDLFLSNEWPTEVTNRVPTSDIPPGV 180

Query: 181 SDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQK 240
           SD S +D+T+SELV EIKPRYHIAG+KGVF+AREPYSNVDAVHVTRFLGLA VGNKEKQK
Sbjct: 181 SDLSGSDATISELVVEIKPRYHIAGTKGVFFAREPYSNVDAVHVTRFLGLASVGNKEKQK 240

Query: 241 FIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDV 300
           FIHA+SP P++TMSA +ISMK PNTTLSPYT  ++ S + ++AKR S+SVS+SQYWRY+V
Sbjct: 241 FIHAISPIPSSTMSAVEISMKPPNTTLSPYTLTERKSEASDSAKRSSNSVSESQYWRYEV 300

Query: 301 SQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKG 360
           SQKRQK+G  D +K+CFKF  SGSCPRGEKCNF HD DAREQ  RGVC DF+ KGKCE+G
Sbjct: 301 SQKRQKYGTSDTNKLCFKFTSSGSCPRGEKCNFHHDMDAREQSQRGVCFDFLNKGKCERG 360

Query: 361 PECSYKHSLQN--DDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPK 418
           P+C++KHS QN  D      RS NA  NRSKECWFCLSSP++ESHLIVSVGE +YCAL K
Sbjct: 361 PDCNFKHSFQNEFDSHSGKRRSGNAGTNRSKECWFCLSSPNIESHLIVSVGESFYCALAK 420

Query: 419 GPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTH 478
           GPLV DH+LVIPVEH PNT+S  P+ E E+ R QN L  Y+K+QGKE VFFEW+SKR TH
Sbjct: 421 GPLVPDHILVIPVEHFPNTLSLGPDYETEINRLQNCLRKYFKSQGKEVVFFEWVSKRSTH 480

Query: 479 ANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVE 538
           ANLQAVPIP+S+A  VQ+IF++AAEKLGFKF+ +KS   S+GR+SLR QFD + SFFY E
Sbjct: 481 ANLQAVPIPSSRAHVVQNIFDMAAEKLGFKFVISKSDAPSEGRKSLRTQFDSDHSFFYAE 540

Query: 539 LPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFE 598
           LPE   LSH+IEENE FPAQFGREVLAGLLN+ADKADWRNC   KEEETKM EDFK RFE
Sbjct: 541 LPECVTLSHVIEENEIFPAQFGREVLAGLLNMADKADWRNCAHSKEEETKMAEDFKIRFE 600

Query: 599 AFDPNQ 604
            FDPN+
Sbjct: 601 NFDPNK 606

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112144|ref|XP_002332828.1| predicted protein [Populus trichocarpa] gi|222833259|gb|EEE71736.1| predicted protein [Populus trichocarpa]

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/614 (73%), Positives = 520/614 (84%), Gaps = 18/614 (2%)

Query: 1   MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG- 59
           MS PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDA+ CVGQFFPDS+E L+EF +Y+EG 
Sbjct: 1   MSTPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDALFCVGQFFPDSAEQLEEFTDYIEGG 60

Query: 60  --RSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG 117
             RS+IP+PTYFIGDYGV A KVL  AS+NSAN GFKMDGFK+ DNLFWL+GSG FTLHG
Sbjct: 61  GGRSQIPLPTYFIGDYGVAAPKVLSTASRNSANLGFKMDGFKICDNLFWLRGSGKFTLHG 120

Query: 118 LSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDML 177
           LSV YLSGRQSS GQ FGTYSQDDVDALRALAEEPG+VD         GVTN+A+ASD+ 
Sbjct: 121 LSVVYLSGRQSSNGQHFGTYSQDDVDALRALAEEPGVVDF--------GVTNRASASDIP 172

Query: 178 VGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237
            G  D++ +DS+VSELVAEIKPRYH AG+KGVFYAREPYSNVDAVHVTRF GLA VGNK+
Sbjct: 173 AGFLDTTGSDSSVSELVAEIKPRYHFAGTKGVFYAREPYSNVDAVHVTRFFGLAMVGNKD 232

Query: 238 KQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWR 297
           KQKFIHA+SPTPA+TMSAA+ISMK PNTTLSPYT +   +  +E  KR + SVSDSQYWR
Sbjct: 233 KQKFIHAISPTPASTMSAAEISMKPPNTTLSPYTLVVDKTALEEVTKRSTASVSDSQYWR 292

Query: 298 YDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKC 357
           YDVS KR K G G+G+K+CFKFIYSGSCPRGEKCNF+HD DAREQ L GVCLDF+IKGKC
Sbjct: 293 YDVSHKRHKSGSGEGNKLCFKFIYSGSCPRGEKCNFQHDMDAREQYLGGVCLDFLIKGKC 352

Query: 358 EKGPECSYKHSLQND---DSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYC 414
           E+GP+C++KH+LQN+    S+R   SEN + NRSKECWFCLSSP+VESHLI+S+GE+YYC
Sbjct: 353 ERGPDCNFKHNLQNEGESHSRRRRGSENDNGNRSKECWFCLSSPNVESHLIISIGEFYYC 412

Query: 415 ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSK 474
           ALPKGPLV+DHVLVIP+EH P T+S + +   EL +FQNSL +YYKN+GKEA+ FEW+SK
Sbjct: 413 ALPKGPLVQDHVLVIPIEHAPCTLSLTQQSNSELVKFQNSLKLYYKNRGKEAILFEWISK 472

Query: 475 RGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATK----SSKSSDGRRSLRAQFDR 530
           R +HAN+Q VP+P++KAAAVQDI NLAAEKLGFKF+  K     + SSDGR  LR QFDR
Sbjct: 473 RSSHANIQVVPVPSTKAAAVQDICNLAAEKLGFKFVVMKFILAVNNSSDGREWLRTQFDR 532

Query: 531 NCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMV 590
           N SFFYVEL EGT+LSH +EENE FPAQFGREVLAGLLN+ ++ADWRNC LGK+EETKM 
Sbjct: 533 NYSFFYVELTEGTILSHSVEENENFPAQFGREVLAGLLNMPERADWRNCALGKDEETKMA 592

Query: 591 EDFKKRFEAFDPNQ 604
           E+FKK+FE  DPNQ
Sbjct: 593 EEFKKQFEELDPNQ 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738661|emb|CBI27906.3| unnamed protein product [Vitis vinifera]

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/607 (71%), Positives = 510/607 (84%), Gaps = 17/607 (2%)

Query: 1   MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGR 60
           M+PPRILLCGDVLGRLNQL KR+ SVNKSAGPFDAVLCVGQFFPDS E L EFM+Y+EGR
Sbjct: 1   MAPPRILLCGDVLGRLNQLVKRILSVNKSAGPFDAVLCVGQFFPDSPERLLEFMDYIEGR 60

Query: 61  SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSV 120
           S+IP+PTYFIGDYG+GAAKVL AASK+SAN GFKMDG ++ DNL+WLKGSG FTLHGLSV
Sbjct: 61  SQIPLPTYFIGDYGIGAAKVLSAASKDSANLGFKMDGLRICDNLYWLKGSGKFTLHGLSV 120

Query: 121 AYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGI 180
            Y+SGR+S +GQQFG YSQDDVDALRALA++              GVT  A  S++  GI
Sbjct: 121 VYISGRRSLDGQQFGKYSQDDVDALRALADD--------------GVTKGAVTSNIPPGI 166

Query: 181 SDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQK 240
           SDSS  DS +SELV EIKPRYHIAG+KG+FY REPYSN+DAVHVTRFLGLAPVGNK+KQK
Sbjct: 167 SDSSGCDSAISELVGEIKPRYHIAGTKGIFYDREPYSNLDAVHVTRFLGLAPVGNKDKQK 226

Query: 241 FIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDV 300
           FIHA+SP PA+TMS+A+ISMK PNTTL PY  +++ + + +A KRPSDS+SD+QYWRYDV
Sbjct: 227 FIHAISPIPASTMSSAEISMKPPNTTLFPYKIIEETAPTNQATKRPSDSISDTQYWRYDV 286

Query: 301 SQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKG 360
           SQKRQKHG GDGDK+CFKF+ SGSCPRG KCNF HDT+AREQ +RGVC DFI KGKCE+G
Sbjct: 287 SQKRQKHGAGDGDKLCFKFVSSGSCPRGNKCNFLHDTEAREQYMRGVCFDFINKGKCERG 346

Query: 361 PECSYKHSLQNDD---SQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALP 417
           P+C++KHSLQ++D   + R   SENA ++RSK CWFCLSSP VESHLI+S+GE YYCAL 
Sbjct: 347 PDCNFKHSLQDEDEGFASRRSGSENAKSSRSKRCWFCLSSPDVESHLIISIGESYYCALA 406

Query: 418 KGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGT 477
           KGPLVED VLVIPVEH  NT+S  PECE EL RFQ SL MY++ QGKE VFFEW+ KRGT
Sbjct: 407 KGPLVEDQVLVIPVEHSANTLSLPPECEIELDRFQKSLKMYFRTQGKEVVFFEWIFKRGT 466

Query: 478 HANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYV 537
           HAN+QAVPIP S+A+AV++IF LAAEKLGF+F+ TKS+  S+GR+SLRAQFD   SFFYV
Sbjct: 467 HANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLRAQFDDKISFFYV 526

Query: 538 ELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRF 597
           ELP+GT+LSH IE+NE+FP QFGREVLAGLLN+AD+ADWRNC   KE+E KM E FK +F
Sbjct: 527 ELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKEDEMKMAEVFKNQF 586

Query: 598 EAFDPNQ 604
           + FDP Q
Sbjct: 587 KKFDPYQ 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547875|ref|XP_003542330.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Glycine max]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/600 (71%), Positives = 506/600 (84%), Gaps = 2/600 (0%)

Query: 4   PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
           PRILLCGDVLGRLNQLFKRV SVNKSAGPFDA+LCVGQFFPDS E L++F  Y+EG S  
Sbjct: 3   PRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHF 62

Query: 64  PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           P+PTYF+GDYGV A K+LL ASK+SANQGFKMDGFKV  NL+WLKGSG F+L GLSVAYL
Sbjct: 63  PLPTYFVGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFSLFGLSVAYL 122

Query: 124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDS 183
           SGR+SS  QQFGTY++DDVDALRA+AEEPGIVDLFLTNEWPSGVTN+AA SD+  G+SD+
Sbjct: 123 SGRKSSSAQQFGTYTEDDVDALRAIAEEPGIVDLFLTNEWPSGVTNRAADSDIPAGLSDA 182

Query: 184 SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH 243
           +  DSTVSELV EIKPRYHIAG+KG++YAREPYSNVDAVHVTRF+GLA VGNK+KQKFIH
Sbjct: 183 AGGDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIH 242

Query: 244 ALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQK 303
           A+SPTPA+TMS+ +I+MKT NTTLSPYT+ ++ +   ++ KR SDS+SD QYWRYDVSQK
Sbjct: 243 AISPTPASTMSSTEIAMKTTNTTLSPYTYEEKRTSPMDSTKRSSDSISDPQYWRYDVSQK 302

Query: 304 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 363
           RQKH  G GDK+CFKF+ SGSCPRGEKCNFRHDTDAREQC+RGVC DF+ KGKCE+GP+C
Sbjct: 303 RQKHEAGHGDKLCFKFVSSGSCPRGEKCNFRHDTDAREQCMRGVCFDFLNKGKCERGPDC 362

Query: 364 SYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVE 423
           ++KHSLQ++  +   R     + RSKECWFCLSSP+VESHLI+S+GE YY AL KGPLVE
Sbjct: 363 NFKHSLQDEGGRLPSR--RPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVE 420

Query: 424 DHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQA 483
           DHVL+IPVEH+P+T+S S E E EL RFQNSL  Y K+Q KE +FFEW+S RGTHAN+QA
Sbjct: 421 DHVLIIPVEHMPSTLSMSSESEIELSRFQNSLKSYCKSQEKEVIFFEWVSVRGTHANIQA 480

Query: 484 VPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGT 543
           +PIP+SKA   + IFNLAA+KLGF+F+  K    S+GR+ L+AQ D + S FY ++P GT
Sbjct: 481 IPIPSSKAIMAEKIFNLAAQKLGFEFVTKKFDSISEGRKFLKAQIDGDSSLFYAQIPGGT 540

Query: 544 VLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPN 603
           +L H +EE E+FPAQFGREVLAGLLN+AD ADWRN    K+EE K+VE FK RF+ +DPN
Sbjct: 541 ILLHHVEEKEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEMKIVEVFKSRFQEYDPN 600

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145362692|ref|NP_974945.2| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gi|75243460|sp|Q84WU9.1|C3H64_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 64; Short=AtC3H64 gi|27754231|gb|AAO22569.1| unknown protein [Arabidopsis thaliana] gi|332009438|gb|AED96821.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/602 (71%), Positives = 499/602 (82%), Gaps = 9/602 (1%)

Query: 4   PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
           PRILLCGD LGRLNQLFKRVQSV+KSAGPFDA++CVGQFFPDS E+LDEF++YVEGR+++
Sbjct: 3   PRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDSPEILDEFLDYVEGRAQV 62

Query: 64  PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG F+LHGLSVAYL
Sbjct: 63  PIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKFSLHGLSVAYL 122

Query: 124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDS 183
           SGRQSSE Q FG YSQDDVDALRALAEEPG VDLFLTNEWP+GVTN+AA SD+ VGISDS
Sbjct: 123 SGRQSSESQ-FGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAVSDIPVGISDS 181

Query: 184 SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH 243
           S +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK KQKF+H
Sbjct: 182 SCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLH 241

Query: 244 ALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQK 303
           ALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDSQYWRYDV  K
Sbjct: 242 ALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWRYDVP-K 297

Query: 304 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 363
           RQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKCEKGPEC
Sbjct: 298 RQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPEC 356

Query: 364 SYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV 422
           SYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCALPKG LV
Sbjct: 357 SYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLV 414

Query: 423 EDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQ 482
           EDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR +HANLQ
Sbjct: 415 EDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQ 474

Query: 483 AVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEG 542
            VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++     FYVELP+G
Sbjct: 475 VVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDG 534

Query: 543 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDP 602
           TVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+F+ FDP
Sbjct: 535 TVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFDP 594

Query: 603 NQ 604
            Q
Sbjct: 595 CQ 596

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796575|ref|XP_002866172.1| hypothetical protein ARALYDRAFT_495780 [Arabidopsis lyrata subsp. lyrata] gi|297312007|gb|EFH42431.1| hypothetical protein ARALYDRAFT_495780 [Arabidopsis lyrata subsp. lyrata]

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/609 (70%), Positives = 501/609 (82%), Gaps = 16/609 (2%)

Query: 4   PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
           PRILLCGD LGRLNQLFKRVQSV+KSAGPFDA++CVGQFFPD+ ELLDEF++YVEGR+++
Sbjct: 3   PRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDTPELLDEFLDYVEGRTQV 62

Query: 64  PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG FTLHGLSVAYL
Sbjct: 63  PIPTYFTGDYGVVAPKILSMTSKKAENQGFKMDGLEVCHNLFWLRGSGKFTLHGLSVAYL 122

Query: 124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT-------NEWPSGVTNKAAASDM 176
           SGRQSS+ Q FG YSQDDVDALRALAEE G+VDLFLT       NEWP+GVTN+AA SD+
Sbjct: 123 SGRQSSDSQ-FGKYSQDDVDALRALAEESGVVDLFLTYPFFLYTNEWPAGVTNRAAVSDI 181

Query: 177 LVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK 236
            VG+SDSS +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK
Sbjct: 182 PVGVSDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNK 241

Query: 237 EKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYW 296
            KQKF+HALSPTP +TMS A++S K P TTL PY   +  + SK   KRP+DS SDSQYW
Sbjct: 242 NKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQESAAESK---KRPNDSESDSQYW 298

Query: 297 RYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGK 356
           RYDVS KRQK+G   G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGK
Sbjct: 299 RYDVS-KRQKNGS-QGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGK 356

Query: 357 CEKGPECSYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCA 415
           CEKGPECSYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCA
Sbjct: 357 CEKGPECSYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCA 414

Query: 416 LPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKR 475
           LPKG LVEDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR
Sbjct: 415 LPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKR 474

Query: 476 GTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFF 535
            +HANLQ VP+P+S+A  + +IF+LAAEKLGFK +  K S SSDGR+ L+ +++     F
Sbjct: 475 VSHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFSDSSDGRKYLQKEYNAALGLF 534

Query: 536 YVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKK 595
           YVELP+GTVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK
Sbjct: 535 YVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKK 594

Query: 596 RFEAFDPNQ 604
           +F+ FDP Q
Sbjct: 595 QFQEFDPCQ 603

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8777430|dbj|BAA97020.1| unnamed protein product [Arabidopsis thaliana]

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/602 (70%), Positives = 495/602 (82%), Gaps = 12/602 (1%)

Query: 4   PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
           PRILLCGD LGRLNQLFKRVQSV+KSAGPFDA++CVGQFFPDS E+LDEF++YVEGR+++
Sbjct: 3   PRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDSPEILDEFLDYVEGRAQV 62

Query: 64  PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG F+LHGLSVAYL
Sbjct: 63  PIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKFSLHGLSVAYL 122

Query: 124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDS 183
           SGRQSSE Q FG YSQDDVDALRALAEEPG     +TNEWP+GVTN+AA SD+ VGISDS
Sbjct: 123 SGRQSSESQ-FGKYSQDDVDALRALAEEPGGC---ITNEWPAGVTNRAAVSDIPVGISDS 178

Query: 184 SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH 243
           S +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK KQKF+H
Sbjct: 179 SCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLH 238

Query: 244 ALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQK 303
           ALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDSQYWRYDV  K
Sbjct: 239 ALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWRYDVP-K 294

Query: 304 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 363
           RQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKCEKGPEC
Sbjct: 295 RQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPEC 353

Query: 364 SYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV 422
           SYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCALPKG LV
Sbjct: 354 SYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLV 411

Query: 423 EDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQ 482
           EDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR +HANLQ
Sbjct: 412 EDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQ 471

Query: 483 AVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEG 542
            VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++     FYVELP+G
Sbjct: 472 VVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDG 531

Query: 543 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDP 602
           TVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+F+ FDP
Sbjct: 532 TVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFDP 591

Query: 603 NQ 604
            Q
Sbjct: 592 CQ 593

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564790|ref|XP_003550631.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Glycine max]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/510 (73%), Positives = 441/510 (86%), Gaps = 4/510 (0%)

Query: 4   PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
           PRILLCGDVLGRLNQLFKRV SVNKSAGPFDA+LCVGQFFPDS E L++F  Y+EG S  
Sbjct: 3   PRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHF 62

Query: 64  PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           P+PTYFIGDYGV A K+LL ASK+SANQGFKMDGFKV  NL+WLKGSG F L GLSVAYL
Sbjct: 63  PLPTYFIGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFPLFGLSVAYL 122

Query: 124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDS 183
           SGR+SS GQQFG Y++DDVDALRA+AEEPG+VDLFLTNEWP+GVTN+AA SD+  G+SD 
Sbjct: 123 SGRKSSSGQQFGNYTEDDVDALRAIAEEPGVVDLFLTNEWPNGVTNRAADSDIPAGLSDG 182

Query: 184 SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH 243
           S  DSTVSELV EIKPRYHIAG+KG++YAREPYSNVDAVHVTRF+GLA VGN++KQKFIH
Sbjct: 183 S--DSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIH 240

Query: 244 ALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQK 303
           A+SPTPA+TMS+ +I+MKT NTTLSPYTF ++ +   ++AKR SDS+SD QYWRYDV+QK
Sbjct: 241 AISPTPASTMSSTEIAMKTTNTTLSPYTFKEKRTSPMDSAKRSSDSISDPQYWRYDVAQK 300

Query: 304 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 363
           RQKH  G GDK+CFKF+ SGSCPRGEKCNF+HDTDAREQC+RGVC DF+ KGKCE+GP+C
Sbjct: 301 RQKHEAGHGDKLCFKFVSSGSCPRGEKCNFQHDTDAREQCMRGVCFDFLNKGKCERGPDC 360

Query: 364 SYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVE 423
           ++KHSLQ++ ++   R     + RSKECWFCLSSP+VESHLI+S+GE YY AL KGPLVE
Sbjct: 361 NFKHSLQDEGNRLPSR--RPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVE 418

Query: 424 DHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQA 483
           DHVL+IPVEH+P+T+S  PE E EL RFQNSL  Y K+Q KE +FFEW+S RGTHANLQA
Sbjct: 419 DHVLIIPVEHMPSTLSMPPESEIELSRFQNSLRSYCKSQEKEFIFFEWVSIRGTHANLQA 478

Query: 484 VPIPTSKAAAVQDIFNLAAEKLGFKFLATK 513
           +PIP+SKA  V+ +FNLAA+KLGF+F+A K
Sbjct: 479 IPIPSSKAIMVEKVFNLAAQKLGFEFVAKK 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
TAIR|locus:2164630	596	AT5G56900 [Arabidopsis thalian	0.981	0.994	0.712	1.6e-235
MGI|MGI:1919752	537	Cwf19l1 "CWF19-like 1, cell cy	0.334	0.376	0.413	2.5e-80
UNIPROTKB|F1S8V2	540	CWF19L1 "Uncharacterized prote	0.334	0.374	0.413	2.8e-80
UNIPROTKB|E1BG07	539	CWF19L1 "Uncharacterized prote	0.334	0.374	0.409	5.3e-80
UNIPROTKB|E2RJE9	537	CWF19L1 "Uncharacterized prote	0.375	0.422	0.390	5.4e-79
RGD|1304716	537	Cwf19l1 "CWF19-like 1, cell cy	0.334	0.376	0.404	1.6e-78
ZFIN|ZDB-GENE-031204-5	544	cwf19l1 "CWF19-like 1, cell cy	0.486	0.540	0.329	6.3e-78
UNIPROTKB|Q69YN2	538	CWF19L1 "CWF19-like protein 1"	0.334	0.375	0.395	3.3e-77
UNIPROTKB|E1C959	548	E1C959 "Uncharacterized protei	0.425	0.468	0.358	3.3e-70
FB|FBgn0033615	545	CG7741 [Drosophila melanogaste	0.461	0.511	0.346	1.9e-66

TAIR|locus:2164630 AT5G56900 [Arabidopsis thaliana (taxid:3702)]

 Score = 2271 (804.5 bits), Expect = 1.6e-235, P = 1.6e-235
 Identities = 429/602 (71%), Positives = 499/602 (82%)

Query:     4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEI 63
             PRILLCGD LGRLNQLFKRVQSV+KSAGPFDA++CVGQFFPDS E+LDEF++YVEGR+++
Sbjct:     3 PRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDSPEILDEFLDYVEGRAQV 62

Query:    64 PIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
             PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG F+LHGLSVAYL
Sbjct:    63 PIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKFSLHGLSVAYL 122

Query:   124 SGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDS 183
             SGRQSSE Q FG YSQDDVDALRALAEEPG VDLFLTNEWP+GVTN+AA SD+ VGISDS
Sbjct:   123 SGRQSSESQ-FGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAVSDIPVGISDS 181

Query:   184 SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH 243
             S +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK KQKF+H
Sbjct:   182 SCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLH 241

Query:   244 ALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQK 303
             ALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDSQYWRYDV  K
Sbjct:   242 ALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWRYDVP-K 297

Query:   304 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 363
             RQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKCEKGPEC
Sbjct:   298 RQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPEC 356

Query:   364 SYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV 422
             SYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCALPKG LV
Sbjct:   357 SYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLV 414

Query:   423 EDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQ 482
             EDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR +HANLQ
Sbjct:   415 EDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQ 474

Query:   483 AVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEG 542
              VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++     FYVELP+G
Sbjct:   475 VVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDG 534

Query:   543 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDP 602
             TVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+F+ FDP
Sbjct:   535 TVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFDP 594

Query:   603 NQ 604
              Q
Sbjct:   595 CQ 596

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

MGI|MGI:1919752 Cwf19l1 "CWF19-like 1, cell cycle control (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 2.5e-80, Sum P(2) = 2.5e-80
 Identities = 89/215 (41%), Positives = 131/215 (60%)

Query:   391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 450
             CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H  + +  S E  +E+ +
Sbjct:   327 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 386

Query:   451 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 508
             ++ +L  ++K++GK  V FE  + R  H  LQ +P+P S  A   ++D F   A++   +
Sbjct:   387 YKATLQRFFKSRGKRCVLFE-RNYRSHHLQLQVIPVPLSCCATDDIKDAFITQAQEQQIE 445

Query:   509 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAG-- 566
              L  +  + SD ++   AQ     ++FYVEL  G  L H I++N  FP QFGREVLA   
Sbjct:   446 LL--EIPEHSDIKQI--AQ--PGAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 497

Query:   567 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
             +LNI +KADWR C   K+EE  +   F+K FE FD
Sbjct:   498 ILNIPEKADWRQCQTSKDEEEALARRFRKDFEPFD 532

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S8V2 CWF19L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 424 (154.3 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 89/215 (41%), Positives = 133/215 (61%)

Query:   391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 450
             CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H  + +  S E  +E+ +
Sbjct:   330 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 389

Query:   451 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 508
             ++ +L  ++K++GK  V FE  + +  H  LQ +P+P S+ A   ++D F   A++   +
Sbjct:   390 YKATLRRFFKSRGKRCVLFE-RNYKSHHLQLQVIPVPLSRCATDDIKDAFITQAQEQQIE 448

Query:   509 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAG-- 566
              L  +  + SD ++   AQ     ++FYVEL  G  L H I++N  FP QFGREVLA   
Sbjct:   449 LL--EIPEHSDIKQI--AQ--PGAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 500

Query:   567 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
             +LNI DK+DWR C + KEEE  +   F+K FE FD
Sbjct:   501 ILNIPDKSDWRQCQISKEEEETLARRFRKDFEPFD 535

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BG07 CWF19L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 5.3e-80, Sum P(2) = 5.3e-80
 Identities = 88/215 (40%), Positives = 132/215 (61%)

Query:   391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 450
             CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H  + +  S E  +E+ +
Sbjct:   328 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 387

Query:   451 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 508
             ++ +L  +++++GK  V FE  + +  H  LQ +P+P S  A   ++D F   A++   +
Sbjct:   388 YKATLRRFFRSRGKRCVLFE-RNYKSHHLQLQVIPVPLSSCATDDIKDAFITQAQEQQIE 446

Query:   509 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAG-- 566
              L  +  + SD ++   AQ     ++FYVEL  G  L H I++N  FP QFGREVLA   
Sbjct:   447 LL--EIPEHSDIKQI--AQ--PGAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 498

Query:   567 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
             +LNI DK+DWR C + KEEE  +   F+K FE FD
Sbjct:   499 ILNIPDKSDWRKCQMSKEEEETLARRFRKDFEPFD 533

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E2RJE9 CWF19L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 420 (152.9 bits), Expect = 5.4e-79, Sum P(2) = 5.4e-79
 Identities = 94/241 (39%), Positives = 139/241 (57%)

Query:   366 KHSLQNDDSQRTHRSENASANRSK-ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVED 424
             K S    D++  H  +     +    CWFCL+SP VE HL+V++G + Y AL KG L +D
Sbjct:   301 KRSSTGRDNKSPHPKQPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDD 360

Query:   425 HVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAV 484
             HVL++P+ H  + +  S E  +E+ +++ +L  ++K++GK  V FE  + +  H  LQ +
Sbjct:   361 HVLILPIGHYQSVVELSTEVVEEVEKYKVTLRRFFKSRGKRCVLFE-RNYKSHHLQLQVI 419

Query:   485 PIPTSKAAA--VQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEG 542
             P+P S      ++D F   AE+   + L  +  + SD ++   AQ     ++FYVEL  G
Sbjct:   420 PVPLSCCTTDDIKDAFVTQAEQQQIELL--EIPEHSDIKQI--AQ--PGAAYFYVELDTG 473

Query:   543 TVLSHLIEENERFPAQFGREVLAG--LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAF 600
               L H I++N  FP QFGREVLA   +LNI DK+DWR C L KEEE  +   F+K FE F
Sbjct:   474 EKLFHRIKKN--FPLQFGREVLASEAILNIPDKSDWRQCQLSKEEEEMLARRFRKDFEPF 531

Query:   601 D 601
             D
Sbjct:   532 D 532

GO:0003824 "catalytic activity" evidence=IEA

RGD|1304716 Cwf19l1 "CWF19-like 1, cell cycle control (S. pombe)" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 1.6e-78, Sum P(2) = 1.6e-78
 Identities = 87/215 (40%), Positives = 131/215 (60%)

Query:   391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 450
             CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H  + +  S E  +E+ +
Sbjct:   327 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 386

Query:   451 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 508
             ++++L  ++K++GK  V FE  + +  H  LQ +P+P S      ++D F   A++   +
Sbjct:   387 YKDTLKRFFKSRGKRCVLFE-RNYKSHHLQLQVIPVPLSCCVTDDIKDAFITQAQEQQIE 445

Query:   509 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAG-- 566
              L  +  + SD ++   AQ     ++FYVEL  G  L H I++N  FP QFGREVLA   
Sbjct:   446 LL--EIPEHSDIKQI--AQ--PGAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 497

Query:   567 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
             +LNI +KADWR C   K+EE  +   F+K FE FD
Sbjct:   498 ILNIPEKADWRQCQTSKDEEEALARRFRKDFEPFD 532

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-031204-5 cwf19l1 "CWF19-like 1, cell cycle control" [Danio rerio (taxid:7955)]

 Score = 413 (150.4 bits), Expect = 6.3e-78, Sum P(2) = 6.3e-78
 Identities = 109/331 (32%), Positives = 170/331 (51%)

Query:     3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE 62
             P R+L CGDV GR+N LF RV ++ K +G FD +LCVG FF  S E   E+  Y  G  +
Sbjct:     5 PLRVLACGDVEGRINALFNRVNAIQKKSGQFDLLLCVGDFFGSSPEAEAEWATYKSGAKK 64

Query:    63 IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFT-LHGLSVA 121
              PI T  +G           AAS+ +       DG ++ +N+  L   G FT   GL +A
Sbjct:    65 APIHTCILG-----------AASQETVKYFPSSDGCELAENITCLGRRGIFTGASGLQIA 113

Query:   122 YLSGRQS-SEGQQFGTYSQDDVDALRA-LAEEPGI--VDLFLTNEWPSGVTN--KAAASD 175
             Y+SGR++  E      ++  D+ AL A L        VD+ LT++WP GV     +  +D
Sbjct:   114 YVSGREAHQEPAPSHCFTPKDITALVAPLLSNSKFRGVDILLTSQWPRGVCQYGNSPETD 173

Query:   176 M-LVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLG 229
             M   G+S       ++++L  ++KPRYH AG +GV Y R PY N      +  HV+RF+ 
Sbjct:   174 MKFCGVS-------SIADLADKLKPRYHFAGLEGVHYERLPYRNHVVLQENTQHVSRFIA 226

Query:   230 LAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYT-FLDQGSHSKEAAKRPSD 288
             LA V N  K+K+++A +  P   M + ++  +  + T +PY   +  G   +++A     
Sbjct:   227 LATVNNPAKKKYLYAFNIIPMKNMDSTELVKQPQDVTENPYRKLMKDGKKERQSASMTDA 286

Query:   289 SVSDSQYWRYDVSQK--RQKHGG---GDGDK 314
                 +  + +D+ QK  +++HG     DGD+
Sbjct:   287 QEEPASQFFFDLGQKNPQRQHGRKRQSDGDR 317

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q69YN2 CWF19L1 "CWF19-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 405 (147.6 bits), Expect = 3.3e-77, Sum P(2) = 3.3e-77
 Identities = 85/215 (39%), Positives = 132/215 (61%)

Query:   391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 450
             CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H  + +  S E  +E+ +
Sbjct:   328 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 387

Query:   451 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 508
             ++ +L  ++K++GK  V FE  + +  H  LQ +P+P S +    ++D F   A++   +
Sbjct:   388 YKATLRRFFKSRGKWCVVFE-RNYKSHHLQLQVIPVPISCSTTDDIKDAFITQAQEQQIE 446

Query:   509 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAG-- 566
              L  +  + SD ++   AQ     ++FYVEL  G  L H I++N  FP QFGREVLA   
Sbjct:   447 LL--EIPEHSDIKQI--AQ--PGAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 498

Query:   567 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 601
             +LN+ DK+DWR C + KE+E  +   F+K FE +D
Sbjct:   499 ILNVPDKSDWRQCQISKEDEETLARRFRKDFEPYD 533

GO:0003824 "catalytic activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C959 E1C959 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 397 (144.8 bits), Expect = 3.3e-70, Sum P(2) = 3.3e-70
 Identities = 103/287 (35%), Positives = 153/287 (53%)

Query:     3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE 62
             P R+L CGDV GRL  LF RV+++   +G FD +LCVG FF  +S+   E+  Y  G  +
Sbjct:     5 PLRVLACGDVEGRLETLFGRVRAIQSKSGRFDMLLCVGNFFSSTSDA--EWAEYRSGAKK 62

Query:    63 IPIPTYFIGDYGVGAAKVLLAASKNSANQGFK-MDGFKVTDNLFWLKGSGNFT-LHGLSV 120
              PIPT+ +G            A+       F  + G ++ +N+ +L   G F+   GL +
Sbjct:    63 APIPTFVLG------------ANNQETMHCFPHVTGCELAENITYLGRRGLFSGSSGLQI 110

Query:   121 AYLSGRQSS-EGQQFGTYSQDDVDALRA-LAEEPGI--VDLFLTNEWPSGVTNKAAASDM 176
             AYLSG +S  E     ++S  DV  L++ L   P    VD+ LT+ WP GV + A +   
Sbjct:   111 AYLSGTESQDEPTPAYSFSSKDVTELKSSLLSTPDFKGVDILLTSPWPRGVESFANSP-- 168

Query:   177 LVGISDSSNTDST-VSELVAEIKPRYHIAGSKGVFYAREPYSNVDAV-----HVTRFLGL 230
               G  D+    ST +S+L A +KPRYH A  +  +Y R PY N   +     HVTRF+ L
Sbjct:   169 --GEIDTKKCGSTLISDLAASLKPRYHFAALEKAYYERLPYRNHTVLQETPQHVTRFIAL 226

Query:   231 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGS 277
             A VGN  K+K+++A S  P + M  A++  +  + T +PY  L +G+
Sbjct:   227 AEVGNTSKKKYLYAFSIVPMSLMDPAELVKQPQDVTENPYRKLRKGT 273

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0033615 CG7741 [Drosophila melanogaster (taxid:7227)]

 Score = 372 (136.0 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 114/329 (34%), Positives = 160/329 (48%)

Query:     5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIP 64
             +IL+ GDV GR  QLF+RV+ VNK AGPF+ + CVG FF +  +  +E + Y  G   I 
Sbjct:    27 KILVVGDVRGRFKQLFQRVEQVNKKAGPFEILCCVGDFFGEDKQN-EELIAYKNGFKHIT 85

Query:    65 IPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH-GLSVAYL 123
             +PTY +G       K      +N        DG ++  NL +L   G +TL  G+ +AYL
Sbjct:    86 VPTYILGPNQREHEKYF----ENLT------DG-EICTNLTYLGRRGVYTLSSGVKIAYL 134

Query:   124 SGRQS-----SEGQQFGTYSQDDVDALR--------ALAEEPGIVDLFLTNEWPSGVTNK 170
             SG ++     S G +   +++ DV A+R           E  G VD+ LT++WP G+  K
Sbjct:   135 SGLEAQGTADSAGSEH-EFTKADVIAVRNSCLVSKNCSTEYRG-VDVLLTSQWPFGMQEK 192

Query:   171 AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY-----SNVDAVHVT 225
                        +++     VS L  EIKPRYH     G  Y   P+             T
Sbjct:   193 -----------ENATASKLVSFLCREIKPRYHFCAINGTHYESAPFRMPKDETTQFELCT 241

Query:   226 RFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKR 285
             RF+ LA VGN EK K+I+ALS  P       D++ KT N    P+  LD G      A  
Sbjct:   242 RFISLAEVGNAEKAKYIYALSLKPVDKSRLLDLAQKTTNEIPCPFIGLDLGG-----AIG 296

Query:   286 PSDSVSDSQYWRYDVSQKRQKHGGGDGDK 314
              +DS  + QY+ YD+   R+K  GGD +K
Sbjct:   297 KNDSSENRQYF-YDMDGGRRKRQGGDNNK 324

GO:0008419 "RNA lariat debranching enzyme activity" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69NK8	C3H59_ORYSJ	No assigned EC number	0.5957	0.9817	0.9673	yes	no
Q5RGJ5	C19L1_DANRE	No assigned EC number	0.3095	0.8559	0.9503	yes	no
Q84WU9	C3H64_ARATH	No assigned EC number	0.7126	0.9817	0.9949	yes	no
Q69YN2	C19L1_HUMAN	No assigned EC number	0.3035	0.8476	0.9516	yes	no
Q8CI33	C19L1_MOUSE	No assigned EC number	0.3042	0.8427	0.9478	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02850004 hypothetical protein (606 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	604
pfam04677	122	pfam04677, CwfJ_C_1, Protein similar to CwfJ C-ter	6e-42
pfam04676	97	pfam04676, CwfJ_C_2, Protein similar to CwfJ C-ter	8e-27
cd07380	150	cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CW	2e-24
cd07380	150	cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CW	9e-24
cd00844	262	cd00844, MPP_Dbr1_N, Dbr1 RNA lariat debranching e	6e-05
COG5084	285	COG5084, YTH1, Cleavage and polyadenylation specif	0.004

>gnl|CDD|218208 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1

 Score =  147 bits (372), Expect = 6e-42
 Identities = 53/115 (46%), Positives = 75/115 (65%)

Query: 384 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPE 443
                  CWFCLS+P++E HLIVS+G   Y ALPKGPLV  H L+IP++H+P+T+S   E
Sbjct: 7   IKILPDSCWFCLSNPNLEKHLIVSIGNKAYLALPKGPLVSGHCLIIPIQHIPSTLSLDEE 66

Query: 444 CEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIF 498
              E+  F+ +L + YK+QGK+AVFFE  S+R  H ++Q +P+P S +      F
Sbjct: 67  VWDEIRNFRKALTLMYKSQGKDAVFFEIASQRRPHLHIQCIPVPKSISKLAPLYF 121

This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved in mRNA splicing. Length = 122

>gnl|CDD|218207 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2

 Score =  104 bits (261), Expect = 8e-27
 Identities = 42/81 (51%), Positives = 52/81 (64%)

Query: 522 RSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCML 581
           + LR    +   +F+VE P    L+H+IE+ ERFP QFGREVLAGLLN+  + DWR C  
Sbjct: 16  KGLRRVIPKGLPYFHVEFPLDGGLAHVIEDEERFPLQFGREVLAGLLNLPKRVDWRKCKQ 75

Query: 582 GKEEETKMVEDFKKRFEAFDP 602
            KEEE   VE FKK F+ FD 
Sbjct: 76  SKEEERADVEAFKKAFKPFDF 96

This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved in mRNA splicing. Length = 97

>gnl|CDD|163623 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 7  LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIP 66
          L+CGDV GRL  LF++V ++NK  GPFDA+LCVG FF D  +  +E   Y +G  ++PIP
Sbjct: 1  LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-DEELEAYKDGSKKVPIP 59

Query: 67 TYFIGDYGVGA 77
          TYF+G    G 
Sbjct: 60 TYFLGGNNPGV 70

CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 150

>gnl|CDD|163623 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

 Score = 97.4 bits (243), Expect = 9e-24
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 8/84 (9%)

Query: 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYARE 214
           VD+ LT+EWP G++     S +    +        ++EL  ++KPRYH AG +GVFY RE
Sbjct: 70  VDILLTSEWPKGISKL---SKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE 126

Query: 215 PYSNVDAV-----HVTRFLGLAPV 233
           PY N   +     HVTRF+GLAPV
Sbjct: 127 PYRNDSVLEEKAEHVTRFIGLAPV 150

CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 150

>gnl|CDD|163619 cd00844, MPP_Dbr1_N, Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 62/261 (23%), Positives = 102/261 (39%), Gaps = 61/261 (23%)

Query: 14  GRLNQLFKRVQSVNKSAG-PFDAVLCVGQF-------------FPDSSELLDEFMNYVEG 59
           G L+++++ ++ + K  G   D ++C G F              P     + +F  Y  G
Sbjct: 9   GELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSG 68

Query: 60  RSEIPIPTYFIGDYGVG---AAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH 116
             + PI T FIG    G   A+  L               G+ V  N+++L  +G     
Sbjct: 69  EKKAPILTIFIG----GNHEASNYL---------WELPYGGW-VAPNIYYLGYAGVVNFG 114

Query: 117 GLSVAYLSGRQSSEGQQFG-----TYSQD-----------DVDALRALAEEPGIVDLFLT 160
           GL +A LSG   S   + G      YS+D           +V  L+ L +    +D+FL+
Sbjct: 115 GLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQLKQP---IDIFLS 171

Query: 161 NEWPSGVTNKAAASDML---VGISDSSNTDSTVS----ELVAEIKPRYHIAGSKGVFYA- 212
           ++WP G+        +L           + +  S    EL+  +KPRY  +    V +A 
Sbjct: 172 HDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAA 231

Query: 213 ---REPYSNVDAVHVTRFLGL 230
               E  S  +    T+FL L
Sbjct: 232 LVPHENKSPGNTNKETKFLAL 252

Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 262

>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 318 KFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 371
           KF   G C  G  C F H+ D R       C  F +KG C  GP C Y H   +
Sbjct: 108 KFFLRGLCKSGFSCEFLHEYDLRSS-QGPPCRSFSLKGSCSSGPSCGYSHIDPD 160

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	604
KOG2476	528	consensus Uncharacterized conserved protein [Funct	100.0
KOG2477	628	consensus Uncharacterized conserved protein [Funct	100.0
cd00844	262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	100.0
cd07380	150	MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re	100.0
KOG2863	456	consensus RNA lariat debranching enzyme [RNA proce	100.0
PF04677	121	CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In	100.0
PF04676	98	CwfJ_C_2: Protein similar to CwfJ C-terminus 2; In	99.95
COG2129	226	Predicted phosphoesterases, related to the Icc pro	99.89
cd07388	224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	99.88
cd07392	188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	99.84
PRK10687	119	purine nucleoside phosphoramidase; Provisional	99.71
COG0537	138	Hit Diadenosine tetraphosphate (Ap4A) hydrolase an	99.66
PF14582	255	Metallophos_3: Metallophosphoesterase, calcineurin	99.61
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	99.6
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	99.59
cd01276	104	PKCI_related Protein Kinase C Interacting protein	99.53
PF01230	98	HIT: HIT domain; InterPro: IPR001310 The Histidine	99.46
cd07397	238	MPP_DevT Myxococcus xanthus DevT and related prote	99.42
cd01278	104	aprataxin_related aprataxin related: Aprataxin, a	99.41
KOG3275	127	consensus Zinc-binding protein of the histidine tr	99.4
cd07379	135	MPP_239FB Homo sapiens 239FB and related proteins,	99.36
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	99.34
TIGR03729	239	acc_ester putative phosphoesterase. Members of thi	99.25
cd07402	240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	99.2
PF00149	200	Metallophos: Calcineurin-like phosphoesterase; Int	99.17
TIGR00209	347	galT_1 galactose-1-phosphate uridylyltransferase,	99.09
PRK11720	346	galactose-1-phosphate uridylyltransferase; Provisi	99.09
cd07393	232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	99.03
TIGR00040	158	yfcE phosphoesterase, MJ0936 family. Members of th	98.99
PF12850	156	Metallophos_2: Calcineurin-like phosphoesterase su	98.98
KOG3379	150	consensus Diadenosine polyphosphate hydrolase and	98.97
cd07403	129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	98.97
cd07404	166	MPP_MS158 Microscilla MS158 and related proteins,	98.96
PLN02643	336	ADP-glucose phosphorylase	98.91
cd00608	329	GalT Galactose-1-phosphate uridyl transferase (Gal	98.9
PRK11148	275	cyclic 3',5'-adenosine monophosphate phosphodieste	98.89
cd00841	155	MPP_YfcE Escherichia coli YfcE and related protein	98.85
cd00838	131	MPP_superfamily metallophosphatase superfamily, me	98.83
PF11969	116	DcpS_C: Scavenger mRNA decapping enzyme C-term bin	98.81
PRK09453	182	phosphodiesterase; Provisional	98.76
cd07385	223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	98.75
cd07396	267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	98.71
cd07400	144	MPP_YydB Bacillus subtilis YydB and related protei	98.6
PRK05340	241	UDP-2,3-diacylglucosamine hydrolase; Provisional	98.57
cd07394	178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	98.52
COG0622	172	Predicted phosphoesterase [General function predic	98.52
cd00839	294	MPP_PAPs purple acid phosphatases of the metalloph	98.5
cd07395	262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	98.48
KOG3947	305	consensus Phosphoesterases [General function predi	98.45
cd07378	277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	98.41
TIGR01854	231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	98.36
cd00840	223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	98.36
PHA03008	234	hypothetical protein; Provisional	98.34
TIGR00583	405	mre11 DNA repair protein (mre11). All proteins in	98.31
cd08163	257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	98.3
PRK11340	271	phosphodiesterase YaeI; Provisional	98.3
PHA02239	235	putative protein phosphatase	98.22
PHA02546	340	47 endonuclease subunit; Provisional	98.18
PRK00166	275	apaH diadenosine tetraphosphatase; Reviewed	98.12
KOG4359	166	consensus Protein kinase C inhibitor-like protein	98.12
PLN02533	427	probable purple acid phosphatase	98.11
cd07383	199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	98.11
cd07399	214	MPP_YvnB Bacillus subtilis YvnB and related protei	98.09
cd07401	256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	98.09
PRK04036	504	DNA polymerase II small subunit; Validated	98.03
TIGR00619	253	sbcd exonuclease SbcD. This family is based on the	97.92
cd07410	277	MPP_CpdB_N Escherichia coli CpdB and related prote	97.9
cd07424	207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	97.86
cd07423	234	MPP_PrpE Bacillus subtilis PrpE and related protei	97.85
PRK10966	407	exonuclease subunit SbcD; Provisional	97.73
PRK11439	218	pphA serine/threonine protein phosphatase 1; Provi	97.73
TIGR00668	279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	97.69
COG0420	390	SbcD DNA repair exonuclease [DNA replication, reco	97.67
PRK13625	245	bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision	97.6
cd07421	304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	97.58
cd07422	257	MPP_ApaH Escherichia coli ApaH and related protein	97.56
PRK09968	218	serine/threonine-specific protein phosphatase 2; P	97.53
cd07412	288	MPP_YhcR_N Bacillus subtilis YhcR endonuclease and	97.51
COG1409	301	Icc Predicted phosphohydrolases [General function	97.47
cd07413	222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	97.47
cd00144	225	MPP_PPP_family phosphoprotein phosphatases of the	97.46
cd07425	208	MPP_Shelphs Shewanella-like phosphatases, metallop	97.45
cd00845	252	MPP_UshA_N_like Escherichia coli UshA-like family,	97.36
cd08166	195	MPP_Cdc1_like_1 uncharacterized subgroup related t	97.29
cd07386	243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	97.28
cd07411	264	MPP_SoxB_N Thermus thermophilus SoxB and related p	97.26
cd07408	257	MPP_SA0022_N Staphylococcus aureus SA0022 and rela	97.21
cd07406	257	MPP_CG11883_N Drosophila melanogaster CG11883 and	97.12
PRK09419	1163	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	97.07
cd07409	281	MPP_CD73_N CD73 ecto-5'-nucleotidase and related p	97.05
TIGR01530	550	nadN NAD pyrophosphatase/5'-nucleotidase NadN. Thi	97.02
cd07405	285	MPP_UshA_N Escherichia coli UshA and related prote	96.94
PTZ00422	394	glideosome-associated protein 50; Provisional	96.91
COG1768	230	Predicted phosphohydrolase [General function predi	96.84
smart00156	271	PP2Ac Protein phosphatase 2A homologues, catalytic	96.76
cd07420	321	MPP_RdgC Drosophila melanogaster RdgC and related	96.71
TIGR00024	225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	96.63
cd07407	282	MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and	96.52
cd07416	305	MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca	96.51
COG1085	338	GalT Galactose-1-phosphate uridylyltransferase [En	96.47
cd07414	293	MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme	96.4
PRK09558	551	ushA bifunctional UDP-sugar hydrolase/5'-nucleotid	96.38
cd07390	168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	96.36
cd07415	285	MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein	96.35
PTZ00239	303	serine/threonine protein phosphatase 2A; Provision	96.31
cd07417	316	MPP_PP5_C PP5, C-terminal metallophosphatase domai	96.24
PTZ00244	294	serine/threonine-protein phosphatase PP1; Provisio	96.22
PTZ00480	320	serine/threonine-protein phosphatase; Provisional	96.2
cd00842	296	MPP_ASMase acid sphingomyelinase and related prote	96.15
cd07418	377	MPP_PP7 PP7, metallophosphatase domain. PP7 is a p	96.12
COG0737	517	UshA 5'-nucleotidase/2',3'-cyclic phosphodiesteras	96.06
PF02744	166	GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf	96.03
TIGR03767	496	P_acnes_RR metallophosphoesterase, PPA1498 family.	95.85
cd07391	172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	95.82
KOG3325	183	consensus Membrane coat complex Retromer, subunit	95.81
cd07419	311	MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a	95.8
TIGR00282	266	metallophosphoesterase, MG_246/BB_0505 family. A m	95.68
cd08162	313	MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA	95.65
cd07382	255	MPP_DR1281 Deinococcus radiodurans DR1281 and rela	95.53
KOG2679	336	consensus Purple (tartrate-resistant) acid phospha	95.47
cd07398	217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	95.46
cd07384	171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	95.28
cd08165	156	MPP_MPPE1 human MPPE1 and related proteins, metall	94.89
KOG2310	646	consensus DNA repair exonuclease MRE11 [Replicatio	94.83
KOG0371	319	consensus Serine/threonine protein phosphatase 2A,	94.57
COG2908	237	Uncharacterized protein conserved in bacteria [Fun	94.38
KOG1378	452	consensus Purple acid phosphatase [Carbohydrate tr	93.22
PRK09419	1163	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	93.18
KOG0373	306	consensus Serine/threonine specific protein phosph	92.83
cd07387	257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	92.74
COG1408	284	Predicted phosphohydrolases [General function pred	92.68
cd00608	329	GalT Galactose-1-phosphate uridyl transferase (Gal	92.23
COG4186	186	Predicted phosphoesterase or phosphohydrolase [Gen	92.21
KOG0372	303	consensus Serine/threonine specific protein phosph	91.96
cd08164	193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	91.58
COG1407	235	Predicted ICC-like phosphoesterases [General funct	91.49
TIGR03768	492	RPA4764 metallophosphoesterase, RPA4764 family. Th	91.29
COG4360	298	APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr	90.75
KOG0374	331	consensus Serine/threonine specific protein phosph	89.54
KOG3662	410	consensus Cell division control protein/predicted	88.9
TIGR01390	626	CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphod	88.88
PRK09418	780	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	88.21
KOG2958	354	consensus Galactose-1-phosphate uridylyltransferas	88.15
PRK09420	649	cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosp	87.85
PRK11907	814	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	87.59
PLN03103	403	GDP-L-galactose-hexose-1-phosphate guanyltransfera	87.24
cd07381	239	MPP_CapA CapA and related proteins, metallophospha	86.18
KOG1432	379	consensus Predicted DNA repair exonuclease SIA1 [G	85.16
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	84.71
smart00854	239	PGA_cap Bacterial capsule synthesis protein PGA_ca	84.07
PLN02643	336	ADP-glucose phosphorylase	83.89
COG1085	338	GalT Galactose-1-phosphate uridylyltransferase [En	83.27
PF04042	209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	80.7
COG1692	266	Calcineurin-like phosphoesterase [General function	80.6

>KOG2476 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-124  Score=967.50  Aligned_cols=516  Identities=44%  Similarity=0.780  Sum_probs=442.8

Q ss_pred             CCC--CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415            1 MSP--PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         1 m~~--~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      |+.  .|||||||+.|+|+.+|++|+++++|+||||++||+|+||+. +..+.+|.+|.+|..++|+||||.++|...+.
T Consensus         1 Ma~~~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~-~~~~~e~~~ykng~~~vPiptY~~g~~~~~~~   79 (528)
T KOG2476|consen    1 MAQADAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGH-DTQNAEVEKYKNGTKKVPIPTYFLGDNANETE   79 (528)
T ss_pred             CCCCCceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCC-ccchhHHHHHhcCCccCceeEEEecCCCCccc
Confidence            775  499999999999999999999999999999999999999996 34467899999999999999999999986555


Q ss_pred             HHHHHHhccccccCcccCCceecCCEEEcCCCCeEEE-cCcEEEEEecccCCCCCCCCCCCHHHHHHHHH---hhcCCCC
Q 007415           79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL-HGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA---LAEEPGI  154 (604)
Q Consensus        79 ~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~-~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~---l~~~~~~  154 (604)
                      .++..           .+|.|||+||+|||++|++++ +|++||||||.++..... ..|+..|+++|+.   ..+...+
T Consensus        80 ky~~n-----------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~~-~~fs~~dv~~l~~~~~~~~~~~g  147 (528)
T KOG2476|consen   80 KYFEN-----------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKGE-SKFSQADVDELRHRLDTQKEFKG  147 (528)
T ss_pred             eeccc-----------CCCcccccceeeecccceEeecCCcEEEEeeccccccccc-cccCHHHHHHHhcccccccccCC
Confidence            55442           358899999999999999986 599999999998865542 3789999999883   3345789


Q ss_pred             ccEEEeCCCCcccccc-ccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccC-----CCcceeEEE
Q 007415          155 VDLFLTNEWPSGVTNK-AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV-----DAVHVTRFL  228 (604)
Q Consensus       155 vDILLTh~wP~gi~~~-~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~-----~~~~~TRFI  228 (604)
                      ||||||++||.+|+.. +..  .+.   ....||..|++|+.++||||||+|..++||||+||+|+     ...++||||
T Consensus       148 vDILlTseWP~~v~e~~ss~--~~~---~~~~gs~lvs~La~~lkPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI  222 (528)
T KOG2476|consen  148 VDILLTSEWPADVQERNSSL--PES---KRLCGSELVSELAAELKPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFI  222 (528)
T ss_pred             ccEEEecCCcchhhhccccC--ccc---cCCcchHHHHHHHHhcCcceEeccCCCceeecccccchhhhcccccceeeee
Confidence            9999999999999874 221  111   24689999999999999999999999999999999995     378999999


Q ss_pred             EcCCCCCcccceeEEEeccCCCCCCchhcccCCCCCCcCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCC
Q 007415          229 GLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHG  308 (604)
Q Consensus       229 ~L~~~gn~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~t~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (604)
                      +||++||++|+||+|||++.|+.+|...+|++.|+|+|+|||....   ......+|..++  ++.+++||+++++.+  
T Consensus       223 ~LA~vGN~ek~K~lYAfs~~P~~~~~~~el~a~Ppn~~~~Py~~~d---~~~qs~kr~~~s--~~~q~ffd~~~~~~~--  295 (528)
T KOG2476|consen  223 ALAKVGNPEKQKWLYAFSLKPMGTMELAELTAKPPNLIPNPYNLED---VAIQSNKRPNSS--ESTQYFFDMDKQQLS--  295 (528)
T ss_pred             ehhhcCCccccceeeeecccccccchhhhcccCCCccCCCCcchhh---hhhhhccCCCCC--ccceeeeccCccccc--
Confidence            9999999999999999999999999999999999999999996211   111234555433  244455998633222  


Q ss_pred             CCCCCCcceeeeccCCCCCCCcccccCCchhhhhhccccchhhhhcccCCCCCCccccCCcCCCccccccCCcccccCCC
Q 007415          309 GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRS  388 (604)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (604)
                                                                      +.+||+.-.++.     .+++|.    +.+.+
T Consensus       296 ------------------------------------------------~~~gr~~h~~~~-----~kgpR~----p~~~p  318 (528)
T KOG2476|consen  296 ------------------------------------------------KMNGRESHSDKS-----EKGPRK----PKIPP  318 (528)
T ss_pred             ------------------------------------------------cCCccccccccc-----ccCCCC----CCCCC
Confidence                                                            112222221210     011111    23567


Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVF  468 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~~v~  468 (604)
                      +.||||++||++++||||+||+++|++||||||+.||+|||||.|++++..+++++++||.+|+.+|++||+++|..+|+
T Consensus       319 g~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~vv  398 (528)
T KOG2476|consen  319 GSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAVV  398 (528)
T ss_pred             CceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccCCCCcchhhhHhhhcCCCCCeEEEEecCCcEEEEE
Q 007415          469 FEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHL  548 (604)
Q Consensus       469 ~E~~~~~~~H~HihvvPvp~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~~~~~~~~  548 (604)
                      ||+.+.++.|+|+|+||||+.....++..|..++++++++|++.+...      .+.+..+.+.+||+||+|+|+.|+|+
T Consensus       399 fE~~~~rs~Hlq~Qvipvpks~s~~ik~~F~~~A~eag~ef~t~~~~~------s~~~~~n~~l~yF~vELPdg~~L~hr  472 (528)
T KOG2476|consen  399 FERQSYRSVHLQLQVIPVPKSSSRQIKSSFETAAEEAGLEFETYDSHS------SIKNQSNNGLPYFVVELPDGSILIHR  472 (528)
T ss_pred             EEeecccceeeEEEEEeccchhhhhhhHHHHHHHHHcCceEEecCcch------hhhhhhccCCceEEEECCCCCeehhh
Confidence            996688999999999999999999999999999999999999877543      36666777889999999999999999


Q ss_pred             eccCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 007415          549 IEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ  604 (604)
Q Consensus       549 i~~~~~f~~qFgR~Vla~lL~lp~r~~Wr~c~~~~~ee~~~~~~F~~~f~~fD~~~  604 (604)
                      +..+++||+||||||||+|||||+|+|||+|.+++|||++.+++||++|++||||+
T Consensus       473 ~~k~e~FplqFGReVlAslLn~pdrvdWr~C~~tkeeE~~~ae~Fkk~F~pyDft~  528 (528)
T KOG2476|consen  473 LMKNETFPLQFGREVLASLLNLPDRVDWRTCLQTKEEEVALAEKFKKAFKPYDFTL  528 (528)
T ss_pred             hhccCccchhhhHHHHHHHcCCcccccHHHhhhhhHHHHHHHHHHHHhccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999996

>KOG2477 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-47  Score=398.63  Aligned_cols=217  Identities=24%  Similarity=0.483  Sum_probs=197.4

Q ss_pred             CCCCCcccCCCCCCCcceEEEECCEEEEEecCC-CCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 007415          387 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE  465 (604)
Q Consensus       387 ~~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kg-pl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~  465 (604)
                      ..++|.||+.++..++|+|||+|..+||+||.. +|..|||+|||.+|.++..+||+++|+||++|+++|+.||++.+.+
T Consensus       405 ~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d  484 (628)
T KOG2477|consen  405 VLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD  484 (628)
T ss_pred             HhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999999999999999975 6999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecc--CCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccC-CCCcchhhhHhhhcCCCCCeEEEEecCC
Q 007415          466 AVFFEWLS--KRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKS-SKSSDGRRSLRAQFDRNCSFFYVELPEG  542 (604)
Q Consensus       466 ~v~~E~~~--~~~~H~HihvvPvp~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~Yf~v~~~~~  542 (604)
                      |||+|.+.  ++.+|+-|||||||.+.+..++.||++|+.+++.||+++.. ...+....+||+.||+++|||+|||+..
T Consensus       485 viFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets~k~lR~~IpKglpYfhV~Fgld  564 (628)
T KOG2477|consen  485 VIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETSKKALRKMIPKGLPYFHVWFGLD  564 (628)
T ss_pred             eEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhhHHHHHHhcccCCCeEEEEEecc
Confidence            99999332  34689999999999999999999999999999999975443 1122235789999999999999999999


Q ss_pred             cEEEEEeccCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 007415          543 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ  604 (604)
Q Consensus       543 ~~~~~~i~~~~~f~~qFgR~Vla~lL~lp~r~~Wr~c~~~~~ee~~~~~~F~~~f~~fD~~~  604 (604)
                      +||+|||+++..||.||||+|||+||+||+. .||.-..........++.|++.|++|||||
T Consensus       565 ~GfaHVIEded~fpsnfa~eViagMLeLpp~-~wRrr~~~~~kqk~rv~~Fa~~wekfDwTK  625 (628)
T KOG2477|consen  565 GGFAHVIEDEDGFPSNFAREVIAGMLELPPE-VWRRRGSWTGKQKPRVDMFASRWEKFDWTK  625 (628)
T ss_pred             CceeeeecccccCcchHHHHHHHHHhhCCHH-HHhhcchhhcCcchHHHHHHHhcccccccc
Confidence            9999999999999999999999999999986 598776666677889999999999999997

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain

Probab=100.00  E-value=4.9e-44  Score=363.64  Aligned_cols=219  Identities=26%  Similarity=0.450  Sum_probs=176.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCCCh-------------hhHHHHHHHhcccCCCCCcEEEEc
Q 007415            6 ILLCGDVLGRLNQLFKRVQSVNKSAG-PFDAVLCVGQFFPDSS-------------ELLDEFMNYVEGRSEIPIPTYFIG   71 (604)
Q Consensus         6 ILv~GDvhG~~~~l~~kv~~l~~k~G-pfD~vi~~GDff~~~~-------------~~~~~~~~~l~g~~~~p~ptyfv~   71 (604)
                      |.|+||+||+|+.++++++.++++++ ++|+|||||||+....             ..+.+|.+|++|..++|+|||||+
T Consensus         1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~   80 (262)
T cd00844           1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG   80 (262)
T ss_pred             CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence            68999999999999999999998876 8999999999976521             134578899999999999999999


Q ss_pred             CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCC-----CCCCCCHHHHHHHH
Q 007415           72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQ-----QFGTYSQDDVDALR  146 (604)
Q Consensus        72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~-----~~~~~te~d~~~L~  146 (604)
                      ||||+ .+++..+.          .|+|+++||+||++++|++++|+|||||||++.....     ...+|+++++.++.
T Consensus        81 GNHE~-~~~l~~l~----------~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y  149 (262)
T cd00844          81 GNHEA-SNYLWELP----------YGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAY  149 (262)
T ss_pred             CCCCC-HHHHHhhc----------CCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhh
Confidence            99997 45666654          3679999999999999999999999999999764321     13478888876543


Q ss_pred             H--------hhcCCCCccEEEeCCCCccccccccccc-------cccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          147 A--------LAEEPGIVDLFLTNEWPSGVTNKAAASD-------MLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       147 ~--------l~~~~~~vDILLTh~wP~gi~~~~~~~~-------~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                      .        +.....+|||||||+||.||.+.++.+.       +...+...+.||+.+++|++++|||||||||.|.+|
T Consensus       150 ~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f  229 (262)
T cd00844         150 HVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKF  229 (262)
T ss_pred             hhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccc
Confidence            1        2222358999999999999988766321       111222237899999999999999999999999988


Q ss_pred             c-ccccccC---CCcceeEEEEcCCCCC
Q 007415          212 A-REPYSNV---DAVHVTRFLGLAPVGN  235 (604)
Q Consensus       212 E-r~Py~~~---~~~~~TRFI~L~~~gn  235 (604)
                      | +.||.|.   +..++|||||||++-+
T Consensus       230 ~~~~~~~~~~~~~~~~~TRFiaL~k~~~  257 (262)
T cd00844         230 AALVPHENKSPGNTNKETKFLALDKCLP  257 (262)
T ss_pred             ceecCCcccccCCCCcceEEEEcccccC
Confidence            8 5699983   3578999999999976

Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s

>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

Probab=100.00  E-value=3.3e-40  Score=308.13  Aligned_cols=145  Identities=50%  Similarity=0.933  Sum_probs=127.4

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhc
Q 007415            7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK   86 (604)
Q Consensus         7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~   86 (604)
                      ||+||+||+++.+|++++++++|+||||++|||||||+...+ .++|.+|++|..++|+||||++|||+           
T Consensus         1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-~~~~~~y~~g~~~~pipTyf~ggn~~-----------   68 (150)
T cd07380           1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-DEELEAYKDGSKKVPIPTYFLGGNNP-----------   68 (150)
T ss_pred             CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccc-hhhHHHHhcCCccCCCCEEEECCCCC-----------
Confidence            799999999999999999999999999999999999998654 36899999999999999999999741           


Q ss_pred             cccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 007415           87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG  166 (604)
Q Consensus        87 ~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~g  166 (604)
                                                                                         ++||||||+||+|
T Consensus        69 -------------------------------------------------------------------~~DILlTh~wP~g   81 (150)
T cd07380          69 -------------------------------------------------------------------GVDILLTSEWPKG   81 (150)
T ss_pred             -------------------------------------------------------------------CCCEEECCCCchh
Confidence                                                                               3899999999999


Q ss_pred             ccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCC-----CcceeEEEEcCCC
Q 007415          167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----AVHVTRFLGLAPV  233 (604)
Q Consensus       167 i~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~-----~~~~TRFI~L~~~  233 (604)
                      |.+.++...   .....+.||+.|++|++++|||||||||.+.||||+||+|+.     ..++||||+||++
T Consensus        82 i~~~~~~~~---~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi~La~~  150 (150)
T cd07380          82 ISKLSKVPF---EETLLICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYRNDSVLEEKAEHVTRFIGLAPV  150 (150)
T ss_pred             hhhhCCCcc---cccccCCCCHHHHHHHHHcCCCeEeecCCCceEeecCccCCCccccccCcceeEEeccCC
Confidence            976554311   111247899999999999999999999999999999999985     3789999999985

CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site

>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]

Probab=100.00  E-value=1.2e-38  Score=321.43  Aligned_cols=216  Identities=25%  Similarity=0.452  Sum_probs=178.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhc-CCCcEEEEecCCCCC-------------ChhhHHHHHHHhcccCCCCCcEEE
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSA-GPFDAVLCVGQFFPD-------------SSELLDEFMNYVEGRSEIPIPTYF   69 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-GpfD~vi~~GDff~~-------------~~~~~~~~~~~l~g~~~~p~ptyf   69 (604)
                      |||.|-|++||.++.+++.+..++++. +|+|++||||||++.             .+..+++|..|++|+.++|+||+|
T Consensus         1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF   80 (456)
T KOG2863|consen    1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF   80 (456)
T ss_pred             CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence            799999999999999999999998884 599999999999764             235688899999999999999999


Q ss_pred             EcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCC-----CCCCCCC------
Q 007415           70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEG-----QQFGTYS------  138 (604)
Q Consensus        70 v~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~-----~~~~~~t------  138 (604)
                      |+|||+. ++++.+|+          -|+|+++||+|||..||+.++|+||||+||++..-.     ..+..|+      
T Consensus        81 IGGNHEA-snyL~eLp----------yGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRs  149 (456)
T KOG2863|consen   81 IGGNHEA-SNYLQELP----------YGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRS  149 (456)
T ss_pred             ecCchHH-HHHHHhcc----------cCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhh
Confidence            9999995 78888886          378999999999999999999999999999986411     1133333      


Q ss_pred             -----HHHHHHHHHhhcCCCCccEEEeCCCCccccccccccc-------cccCcCCCCCCcHHHHHHHHHhCCCEEEEcc
Q 007415          139 -----QDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASD-------MLVGISDSSNTDSTVSELVAEIKPRYHIAGS  206 (604)
Q Consensus       139 -----e~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~-------~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh  206 (604)
                           ..|+..|..+   ..++||+|||+||.||...++...       +.+.++....||+++.+|+++|||+|||++|
T Consensus       150 iYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAH  226 (456)
T KOG2863|consen  150 IYHVRISDVAKLKQL---KHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAH  226 (456)
T ss_pred             hhhhhhhhhHHHHhh---cCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhh
Confidence                 4455566665   578999999999999988876532       3344455679999999999999999999999


Q ss_pred             CCCccc-ccccccCCCcceeEEEEcCCCCC
Q 007415          207 KGVFYA-REPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       207 ~~~fyE-r~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      .|+-|. ..+. + ...++|.|++|.++-.
T Consensus       227 LH~KFaA~v~H-~-~~~~~tkflaldKclp  254 (456)
T KOG2863|consen  227 LHVKFAALVQH-N-KRSHVTKFLALDKCLP  254 (456)
T ss_pred             HhhHHhhhhcc-c-CcCCCcccccccccCC
Confidence            887554 4433 3 3688999999999975

>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues

Probab=100.00  E-value=1.9e-35  Score=265.96  Aligned_cols=116  Identities=43%  Similarity=0.850  Sum_probs=110.5

Q ss_pred             ccCCCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 007415          384 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG  463 (604)
Q Consensus       384 ~~~~~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g  463 (604)
                      ..+.+++||||++|+++++|||||+|+++||++|+|||.+||+||||++|++|+.++|+++|+||++|+++|++||++.|
T Consensus         6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~   85 (121)
T PF04677_consen    6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG   85 (121)
T ss_pred             cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeeccCCCCeeEEEEEecCcchHHHHHHHHH
Q 007415          464 KEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN  499 (604)
Q Consensus       464 ~~~v~~E~~~~~~~H~HihvvPvp~~~~~~~~~~f~  499 (604)
                      +++||||.+..+..|+||||||||++++++++.|||
T Consensus        86 ~~vvf~E~~~~~~~H~~iq~vPvp~~~~~~~~~yFk  121 (121)
T PF04677_consen   86 KDVVFFERVRKRNPHTHIQCVPVPKELGEKAPSYFK  121 (121)
T ss_pred             CCEEEEEEeCCCCcEEEEEEEEcCHHHHHhhhhhcC
Confidence            999999955666899999999999999999999996

Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.

>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues

Probab=99.95  E-value=4.1e-28  Score=211.11  Aligned_cols=96  Identities=46%  Similarity=0.831  Sum_probs=86.6

Q ss_pred             ceeec--cCCCCcchhhhHhhhcCCCCCeEEEEecCCcEEEEEeccCCccCCccHHHHHHHhcCCCccccccccCCChHH
Q 007415          508 KFLAT--KSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEE  585 (604)
Q Consensus       508 ~~~~~--~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~~~~~~~~i~~~~~f~~qFgR~Vla~lL~lp~r~~Wr~c~~~~~e  585 (604)
                      ||++|  ++.....++.++++++++++|||+|+++.+++|+|+|+++++||+||||+|||+||+||+|++||+|.+++++
T Consensus         1 ews~n~~kk~~~~~~~~~~~~~~~~~~~Yf~V~~~~~~~~~~vie~~~~f~~qFgReVla~lL~lp~r~~Wr~c~~~~~e   80 (98)
T PF04676_consen    1 EWSQNEKKKLIDTSKKKGLRRSIPKGFPYFHVEFPDGKGYAHVIEDEERFPLQFGREVLAGLLNLPERADWRKCQQSKEE   80 (98)
T ss_pred             CccccccCCcccccChHHHHHhcCCCCCEEEEEEeCCCEEEEECCcCCccCcchHHHHHHHHhCCCchHHHHhcccCHHH
Confidence            57777  3322222256889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccCCCC
Q 007415          586 ETKMVEDFKKRFEAFDPN  603 (604)
Q Consensus       586 e~~~~~~F~~~f~~fD~~  603 (604)
                      |+++|++||++|++||||
T Consensus        81 e~~~~~~Fk~~f~~fD~T   98 (98)
T PF04676_consen   81 ETQDAEAFKKAFKPFDWT   98 (98)
T ss_pred             HHHHHHHHHHHccCcCCC
Confidence            999999999999999998

Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=189.95  Aligned_cols=199  Identities=18%  Similarity=0.224  Sum_probs=144.6

Q ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCC----CCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF----PDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         1 m~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff----~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |.+||||++.|+||+...+-+.+.....+  .+|+++++||+-    ++.....+.+  .+..+....+|+|+++||+| 
T Consensus         1 ~~~mkil~vtDlHg~~~~~~k~~~~~~~~--~~D~lviaGDlt~~~~~~~~~~~~~~--~~e~l~~~~~~v~avpGNcD-   75 (226)
T COG2129           1 IKKMKILAVTDLHGSEDSLKKLLNAAADI--RADLLVIAGDLTYFHFGPKEVAEELN--KLEALKELGIPVLAVPGNCD-   75 (226)
T ss_pred             CCcceEEEEeccccchHHHHHHHHHHhhc--cCCEEEEecceehhhcCchHHHHhhh--HHHHHHhcCCeEEEEcCCCC-
Confidence            67899999999999987555444443322  589999999984    3332222221  02223557799999999976 


Q ss_pred             hHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHH-HHHhhc-CCCC
Q 007415           77 AAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-LRALAE-EPGI  154 (604)
Q Consensus        77 ~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~-L~~l~~-~~~~  154 (604)
                      +..+...+...             ..|++    ..+.+++|+.|.++||+.++++++.++|+|+++.. |+.+.+ ..+.
T Consensus        76 ~~~v~~~l~~~-------------~~~v~----~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~  138 (226)
T COG2129          76 PPEVIDVLKNA-------------GVNVH----GRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNP  138 (226)
T ss_pred             hHHHHHHHHhc-------------ccccc----cceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCc
Confidence            56666666420             23444    36889999999999999999999999999999886 444332 1222


Q ss_pred             ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCC
Q 007415          155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG  234 (604)
Q Consensus       155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g  234 (604)
                      +-||+||.||++..+.     .|.+  -.|+||.+|+++++++||+.++|||.|..      +..+..+.|.|||+|+.+
T Consensus       139 ~~Il~~HaPP~gt~~d-----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs------~G~d~iG~TivVNPG~~~  205 (226)
T COG2129         139 VNILLTHAPPYGTLLD-----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHES------RGIDKIGNTIVVNPGPLG  205 (226)
T ss_pred             ceEEEecCCCCCcccc-----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccc------ccccccCCeEEECCCCcc
Confidence            2299999999999653     1333  15899999999999999999999997642      222367789999999965

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain

Probab=99.88  E-value=2.4e-21  Score=192.94  Aligned_cols=195  Identities=17%  Similarity=0.214  Sum_probs=134.3

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL   82 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~   82 (604)
                      .+|||+++|+||++..+-..++ ..++. .+|+||++||+...... .+++.+++.-...+++|+|+|+||||.+  +..
T Consensus         4 ~~kIl~iSDiHgn~~~le~l~~-~~~~~-~~D~vv~~GDl~~~g~~-~~~~~~~l~~l~~l~~pv~~V~GNhD~~--v~~   78 (224)
T cd07388           4 VRYVLATSNPKGDLEALEKLVG-LAPET-GADAIVLIGNLLPKAAK-SEDYAAFFRILGEAHLPTFYVPGPQDAP--LWE   78 (224)
T ss_pred             eeEEEEEEecCCCHHHHHHHHH-HHhhc-CCCEEEECCCCCCCCCC-HHHHHHHHHHHHhcCCceEEEcCCCChH--HHH
Confidence            5899999999999876644443 33333 48999999999654311 1223344433356778999999999963  334


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcC-cEEEEEecccCCCCCCCCCCCHHHH--------HH-HHHhhcCC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQFGTYSQDDV--------DA-LRALAEEP  152 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~G-lrIa~lgG~~~~~~~~~~~~te~d~--------~~-L~~l~~~~  152 (604)
                      .+...       .+...+-|+...|+. +++++.| ++|+|+||+..++    .+++|+++        +. |..+....
T Consensus        79 ~l~~~-------~~~~~~~p~~~~lh~-~~~~~~g~~~~~GlGGs~~~~----~e~sE~e~~~~~~~~~~~~l~~~~~~~  146 (224)
T cd07388          79 YLREA-------YNAELVHPEIRNVHE-TFAFWRGPYLVAGVGGEIADE----GEPEEHEALRYPAWVAEYRLKALWELK  146 (224)
T ss_pred             HHHHH-------hcccccCccceecCC-CeEEecCCeEEEEecCCcCCC----CCcCHHHHhhhhhhHHHHHHHHHHhCC
Confidence            33310       001122345556664 5677765 8999999998764    45678873        22 22232224


Q ss_pred             CCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCC
Q 007415          153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAP  232 (604)
Q Consensus       153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~  232 (604)
                      ...||||||.||.|+..             .++||+++++++++.+|++++|||.|.-+|        ..+-|.+||+|+
T Consensus       147 ~~~~VLv~H~PP~g~g~-------------~h~GS~alr~~I~~~~P~l~i~GHih~~~~--------~~g~t~vvNpg~  205 (224)
T cd07388         147 DYRKVFLFHTPPYHKGL-------------NEQGSHEVAHLIKTHNPLVVLVGGKGQKHE--------LLGASWVVVPGD  205 (224)
T ss_pred             CCCeEEEECCCCCCCCC-------------CccCHHHHHHHHHHhCCCEEEEcCCceeEE--------EeCCEEEECCCc
Confidence            56999999999999821             379999999999999999999999774333        456799999999


Q ss_pred             CCC
Q 007415          233 VGN  235 (604)
Q Consensus       233 ~gn  235 (604)
                      +..
T Consensus       206 ~~~  208 (224)
T cd07388         206 LSE  208 (224)
T ss_pred             ccC
Confidence            754

This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain

Probab=99.84  E-value=2.6e-19  Score=172.83  Aligned_cols=187  Identities=16%  Similarity=0.131  Sum_probs=128.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHh
Q 007415            6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS   85 (604)
Q Consensus         6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~   85 (604)
                      ||++||+||++..+..  ..+  +..++|+||++||+............+.+   ...++|+|+|+||||.. .....+ 
T Consensus         1 i~~~sD~H~~~~~~~~--~~~--~~~~~D~vv~~GDl~~~~~~~~~~~~~~l---~~~~~p~~~v~GNHD~~-~~~~~~-   71 (188)
T cd07392           1 ILAISDIHGDVEKLEA--IIL--KAEEADAVIVAGDITNFGGKEAAVEINLL---LAIGVPVLAVPGNCDTP-EILGLL-   71 (188)
T ss_pred             CEEEEecCCCHHHHHH--HHh--hccCCCEEEECCCccCcCCHHHHHHHHHH---HhcCCCEEEEcCCCCCH-HHHHhh-
Confidence            7999999999987654  223  23368999999999765432111122444   45789999999999963 222221 


Q ss_pred             ccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 007415           86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS  165 (604)
Q Consensus        86 ~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~  165 (604)
                                     .++...+. ..++.++|++|++++|...........+++++++.+..+.......+||+||.||.
T Consensus        72 ---------------~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~pp~  135 (188)
T cd07392          72 ---------------TSAGLNLH-GKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAPPY  135 (188)
T ss_pred             ---------------hcCcEecC-CCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCCCc
Confidence                           12344555 36777899999999998654444445778888887632333345789999999998


Q ss_pred             cc-cccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415          166 GV-TNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA  231 (604)
Q Consensus       166 gi-~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~  231 (604)
                      +. .+...     .   ..+.|+..+.++++..+|+++||||.|..+..      .....|.+||.|
T Consensus       136 ~~~~d~~~-----~---~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~------~~~~~~~~~n~G  188 (188)
T cd07392         136 GTAVDRVS-----G---GFHVGSKAIRKFIEERQPLLCICGHIHESRGV------DKIGNTLVVNPG  188 (188)
T ss_pred             CCcccccC-----C---CCccCCHHHHHHHHHhCCcEEEEeccccccce------eeeCCeEEecCC
Confidence            84 32111     1   12579999999999999999999998865431      134568999876

PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina

>PRK10687 purine nucleoside phosphoramidase; Provisional

Probab=99.71  E-value=3e-17  Score=147.97  Aligned_cols=100  Identities=19%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hcC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQG  463 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~g  463 (604)
                      ++|+||.+..+.....+|++++.++++++..|+++||+||||++|++++.+++++++.++..+.+.++++.+     ..|
T Consensus         3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g   82 (119)
T PRK10687          3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG   82 (119)
T ss_pred             CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            479999987554445578999999999999999999999999999999999999999999988877776654     245


Q ss_pred             CceEEEe--eccCCCCeeEEEEEecCc
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPvp~  488 (604)
                      ++++++.  .+++.+.|+|+|+||...
T Consensus        83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~  109 (119)
T PRK10687         83 YRLIMNTNRHGGQEVYHIHMHLLGGRP  109 (119)
T ss_pred             eEEEEeCCCcCCcccCEEEEEECCCcc
Confidence            6666665  334447899999999744

>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]

Probab=99.66  E-value=2.8e-16  Score=145.38  Aligned_cols=99  Identities=21%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----HHhcCCc
Q 007415          390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQGKE  465 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~----~~~~g~~  465 (604)
                      .|.||.+-.......+|+++++++++++..|.++||+||||++|+.++.+++++++.+|....+.+.+.    +.+.|++
T Consensus         2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n   81 (138)
T COG0537           2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN   81 (138)
T ss_pred             CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            699998764444556899999999999999999999999999999999999999999998776555544    5567888


Q ss_pred             eEEEe--eccCCCCeeEEEEEecCc
Q 007415          466 AVFFE--WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       466 ~v~~E--~~~~~~~H~HihvvPvp~  488 (604)
                      ++.+.  .+++-+.|+|+|+||+-.
T Consensus        82 i~~N~g~~agq~V~HlH~HvIPr~~  106 (138)
T COG0537          82 IGINNGKAAGQEVFHLHIHIIPRYK  106 (138)
T ss_pred             EEEecCcccCcCcceEEEEEcCCcC
Confidence            87775  334347899999999754

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A

Probab=99.61  E-value=3.4e-14  Score=138.07  Aligned_cols=200  Identities=18%  Similarity=0.243  Sum_probs=119.4

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHH--------------------------HHh
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFM--------------------------NYV   57 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~--------------------------~~l   57 (604)
                      -|||+++|.+|+++.+-+.+..+..+.  .|+|+++||+...... .++|.                          .++
T Consensus         6 ~kilA~s~~~g~~e~l~~l~~~~~e~~--~D~~v~~G~~~~~~a~-~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff   82 (255)
T PF14582_consen    6 RKILAISNFRGDFELLERLVEVIPEKG--PDAVVFVGDLLKAEAR-SDEYERAQEEQREPDKSEINEEECYDSEALDKFF   82 (255)
T ss_dssp             -EEEEEE--TT-HHHHHHHHHHHHHHT---SEEEEES-SS-TCHH-HHHHHHHHHTT----THHHHHHHHHHHHHHHHHH
T ss_pred             hhheeecCcchHHHHHHHHHhhccccC--CCEEEEeccccccchh-hhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHH
Confidence            389999999999998877777777763  7999999999665221 11222                          455


Q ss_pred             cccCCCCCcEEEEcCCCCChHH-HHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcC-cEEEEEecccCCCCCC--
Q 007415           58 EGRSEIPIPTYFIGDYGVGAAK-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQ--  133 (604)
Q Consensus        58 ~g~~~~p~ptyfv~GNh~~~~~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~G-lrIa~lgG~~~~~~~~--  133 (604)
                      .-...+++||++||||+|.|.+ ++..+..          ..-+.+|++.++ .+++.+.| +-|+|+||........  
T Consensus        83 ~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~----------~e~v~p~~~~vH-~sf~~~~g~y~v~G~GGeI~~~~~~~~  151 (255)
T PF14582_consen   83 RILGELGVPVFVVPGNMDAPERFFLREAYN----------AEIVTPHIHNVH-ESFFFWKGEYLVAGMGGEITDDQREEE  151 (255)
T ss_dssp             HHHHCC-SEEEEE--TTS-SHHHHHHHHHH----------CCCC-TTEEE-C-TCEEEETTTEEEEEE-SEEESSS-BCS
T ss_pred             HHHHhcCCcEEEecCCCCchHHHHHHHHhc----------cceeccceeeee-eeecccCCcEEEEecCccccCCCcccc
Confidence            5557899999999999998755 3444431          223679999999 47888887 9999999986433221  


Q ss_pred             -CCCC-CHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          134 -FGTY-SQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       134 -~~~~-te~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                       .-.| .-+..-.|+-+-.....--|||+|.+|. +.         .+  ..+.||..+++|+++.+|+..+|||.|.--
T Consensus       152 ~~LrYP~weaey~lk~l~elk~~r~IlLfhtpPd-~~---------kg--~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~  219 (255)
T PF14582_consen  152 FKLRYPAWEAEYSLKFLRELKDYRKILLFHTPPD-LH---------KG--LIHVGSAAVRDLIKTYNPDIVLCGHIHESH  219 (255)
T ss_dssp             SS-EEEHHHHHHHHGGGGGCTSSEEEEEESS-BT-BC---------TC--TBTTSBHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred             ccccchHHHHHHHHHHHHhcccccEEEEEecCCc-cC---------CC--cccccHHHHHHHHHhcCCcEEEecccccch
Confidence             1111 1121223433322234467999999992 11         11  147999999999999999999999976543


Q ss_pred             cccccccCCCcceeEEEEcCCCCC
Q 007415          212 AREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       212 Er~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      ..+      ...-|-.||+|.+.-
T Consensus       220 ~~e------~lG~TlVVNPGsL~~  237 (255)
T PF14582_consen  220 GKE------SLGKTLVVNPGSLAE  237 (255)
T ss_dssp             --E------EETTEEEEE--BGGG
T ss_pred             hhH------HhCCEEEecCccccc
Confidence            222      456799999999854

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=99.60  E-value=4.1e-15  Score=135.65  Aligned_cols=99  Identities=23%  Similarity=0.271  Sum_probs=79.7

Q ss_pred             CcccCCCCC-CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 007415          391 CWFCLSSPS-VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE  465 (604)
Q Consensus       391 C~FC~~~~~-~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~~  465 (604)
                      |+||.+... .+...||++++.++++++..|..+||+||||++|++++.+|+++++.++..+.+.+.+.++    ..+++
T Consensus         1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   80 (126)
T cd01275           1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN   80 (126)
T ss_pred             CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            999998654 2225789999999999999999999999999999999999999999999988776665554    34666


Q ss_pred             eEEEe--eccCCCCeeEEEEEecCcc
Q 007415          466 AVFFE--WLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       466 ~v~~E--~~~~~~~H~HihvvPvp~~  489 (604)
                      +++..  ..++...|+|+|+||+...
T Consensus        81 ~~~~~g~~~gq~v~H~HiHiiPR~~~  106 (126)
T cd01275          81 IGINDGKAGGGIVPHVHIHIVPRWNG  106 (126)
T ss_pred             EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence            66554  2233468999999997543

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=99.59  E-value=7.7e-15  Score=128.63  Aligned_cols=97  Identities=22%  Similarity=0.256  Sum_probs=78.0

Q ss_pred             CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 007415          390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE  465 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~~  465 (604)
                      +|.||.+..+.....||++++++++++|..|..+||+||+|++|+.++.+++++++.++....+.+.+.+.    ..+++
T Consensus         1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   80 (103)
T cd01277           1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN   80 (103)
T ss_pred             CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            59999986543334489999999999999999999999999999999999999999998877665555444    45777


Q ss_pred             eEEEe--eccCCCCeeEEEEEec
Q 007415          466 AVFFE--WLSKRGTHANLQAVPI  486 (604)
Q Consensus       466 ~v~~E--~~~~~~~H~HihvvPv  486 (604)
                      +++++  ..++...|+|+|++|+
T Consensus        81 ~~~~~~~~~g~~~~H~HiHiiPR  103 (103)
T cd01277          81 ILQNNGRAAGQVVFHVHVHVIPR  103 (103)
T ss_pred             EEEeCCcccCcccCEEEEEEccC
Confidence            77665  2233468999999995

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides

Probab=99.53  E-value=3.8e-14  Score=124.65  Aligned_cols=96  Identities=21%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hcCC
Q 007415          390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQGK  464 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~g~  464 (604)
                      +|+||.+..+.....||++++.+++++|..|.++||+||||++|++++.+|+++++.++..+.+.++++.+     ..|+
T Consensus         1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   80 (104)
T cd01276           1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY   80 (104)
T ss_pred             CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            49999986543335689999999999999999999999999999999999988777777766555544433     3455


Q ss_pred             ceEEEe--eccCCCCeeEEEEEe
Q 007415          465 EAVFFE--WLSKRGTHANLQAVP  485 (604)
Q Consensus       465 ~~v~~E--~~~~~~~H~HihvvP  485 (604)
                      ++++..  .+++...|+|+|+|+
T Consensus        81 n~~~~~g~~~g~~v~H~HiHii~  103 (104)
T cd01276          81 RLVINCGKDGGQEVFHLHLHLLG  103 (104)
T ss_pred             EEEEeCCCCCCCceeEEEEEEeC
Confidence            665554  223335899999997

The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.

>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []

Probab=99.46  E-value=3e-13  Score=117.78  Aligned_cols=86  Identities=21%  Similarity=0.284  Sum_probs=69.8

Q ss_pred             cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe--eccCC
Q 007415          402 SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKR  475 (604)
Q Consensus       402 ~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~~~v~~E--~~~~~  475 (604)
                      ...||++++.++++++..|.++||+||||++|+.++.+++++++.+|+...+.+.+.++.    .|++++.+.  .+++.
T Consensus         5 ~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~   84 (98)
T PF01230_consen    5 PARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS   84 (98)
T ss_dssp             HCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred             CeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence            345889999999999999999999999999999999999999999999887777766553    466666655  33444


Q ss_pred             CCeeEEEEEecC
Q 007415          476 GTHANLQAVPIP  487 (604)
Q Consensus       476 ~~H~HihvvPvp  487 (604)
                      +.|+|+||||+-
T Consensus        85 v~HlH~HviPR~   96 (98)
T PF01230_consen   85 VPHLHFHVIPRY   96 (98)
T ss_dssp             SSS-EEEEEEES
T ss_pred             cCEEEEEEeccc
Confidence            789999999974

Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain

Probab=99.42  E-value=1e-11  Score=124.51  Aligned_cols=202  Identities=21%  Similarity=0.271  Sum_probs=113.8

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH---
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV---   80 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~---   80 (604)
                      .||+++||+||++...  .++.+++ . .+|+||++||+....    .++.+.+   ..++.|+|+|.||||.-...   
T Consensus         1 ~rIa~isDiHg~~~~~--~~~~l~~-~-~pD~Vl~~GDi~~~~----~~~~~~l---~~l~~p~~~V~GNHD~~~~~~~~   69 (238)
T cd07397           1 LRIAIVGDVHGQWDLE--DIKALHL-L-QPDLVLFVGDFGNES----VQLVRAI---SSLPLPKAVILGNHDAWYDATFR   69 (238)
T ss_pred             CEEEEEecCCCCchHH--HHHHHhc-c-CCCEEEECCCCCcCh----HHHHHHH---HhCCCCeEEEcCCCccccccccc
Confidence            4899999999997652  2334433 3 479999999997542    1233444   44678999999999853210   


Q ss_pred             --HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEeccc-CCCCCCC-------CCC---CHHH-HHHHH
Q 007415           81 --LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ-SSEGQQF-------GTY---SQDD-VDALR  146 (604)
Q Consensus        81 --l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~-~~~~~~~-------~~~---te~d-~~~L~  146 (604)
                        .+.+..          .-+...+. ++. .+.+++..+.++.+|+.- +.+...+       ..|   +-+| ++.+.
T Consensus        70 ~k~~~l~~----------~L~~lg~~-~l~-~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~iv  137 (238)
T cd07397          70 KKGDRVQE----------QLELLGDL-HCG-WGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRII  137 (238)
T ss_pred             chHHHHHH----------HHHHhCCc-EEe-ecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHH
Confidence              111110          00011111 222 133345555566666541 1111110       111   2222 22322


Q ss_pred             Hhh--cCCCCccEEEeCCCCccccccccc----cccccCcCCCCCCcHHHHHHHHHhC----CCEEEEccCCCc--cc--
Q 007415          147 ALA--EEPGIVDLFLTNEWPSGVTNKAAA----SDMLVGISDSSNTDSTVSELVAEIK----PRYHIAGSKGVF--YA--  212 (604)
Q Consensus       147 ~l~--~~~~~vDILLTh~wP~gi~~~~~~----~~~~~~~~~~~~Gs~~i~~l~~~lk----PrYhf~Gh~~~f--yE--  212 (604)
                      +..  ......+|||||..|.|..+....    .+.+.+   ...|.+-+++.+..++    |+||++||.|.-  |.  
T Consensus       138 e~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~---~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~  214 (238)
T cd07397         138 AAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPG---GDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKG  214 (238)
T ss_pred             HHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCcC---CCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccccc
Confidence            221  124567999999999999653321    011222   4689999998888888    899999997643  22  


Q ss_pred             -ccccccCCCcceeEEEEcCCC
Q 007415          213 -REPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       213 -r~Py~~~~~~~~TRFI~L~~~  233 (604)
                       |..+..  ....|-|||-|.+
T Consensus       215 ~r~~~~~--~~~gt~y~N~a~~  234 (238)
T cd07397         215 LRNMIAV--DREGTVYLNAASV  234 (238)
T ss_pred             ccceeee--cCCCeEEEecccc
Confidence             222222  2357999998876

DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy

>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

Probab=99.41  E-value=1.3e-12  Score=114.95  Aligned_cols=95  Identities=18%  Similarity=0.116  Sum_probs=73.6

Q ss_pred             CCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh------
Q 007415          390 ECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN------  461 (604)
Q Consensus       390 ~C~FC~~~~~-~-~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~------  461 (604)
                      .|+||.+..+ . ....||+.++.+++++|..|.++||+||||++|+.++.+++++++.++..+.+.+.+.+..      
T Consensus         1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~   80 (104)
T cd01278           1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP   80 (104)
T ss_pred             CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            4999998643 2 2466899999999999999999999999999999999999999999999987766664432      


Q ss_pred             cCCceEEEeeccCCCCeeEEEEE
Q 007415          462 QGKEAVFFEWLSKRGTHANLQAV  484 (604)
Q Consensus       462 ~g~~~v~~E~~~~~~~H~Hihvv  484 (604)
                      .|+++++.....+...|+|+|+|
T Consensus        81 ~~~n~g~h~~p~~~v~H~H~Hvi  103 (104)
T cd01278          81 SEFRFGFHAPPFTSVSHLHLHVI  103 (104)
T ss_pred             cCeEEEeCCCCCcCeeeEEEEee
Confidence            23443333211223579999997

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.

>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]

Probab=99.40  E-value=1.1e-12  Score=113.63  Aligned_cols=98  Identities=16%  Similarity=0.132  Sum_probs=81.7

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccc---cCCCCCCCHHHHHHHHHHHHHHHHHHH-hcC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEH---VPNTISTSPECEKELGRFQNSLMMYYK-NQG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H---~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~g  463 (604)
                      ...|+||.+-.+.-...||++++.|+++.+..|..|||.||||+.|   .+...+.+++....++-..+.+.+.+. ..|
T Consensus        15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~g   94 (127)
T KOG3275|consen   15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDG   94 (127)
T ss_pred             CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccc
Confidence            5689999987543334588999999999999999999999999999   556667899999999999888888877 467


Q ss_pred             CceEEEe-ec-cCCCCeeEEEEEe
Q 007415          464 KEAVFFE-WL-SKRGTHANLQAVP  485 (604)
Q Consensus       464 ~~~v~~E-~~-~~~~~H~HihvvP  485 (604)
                      |.++.++ .. .+.+.|+|+||+|
T Consensus        95 Yrvv~NnG~~g~QsV~HvH~Hvlg  118 (127)
T KOG3275|consen   95 YRVVQNNGKDGHQSVYHVHLHVLG  118 (127)
T ss_pred             eeEEEcCCcccceEEEEEEEEEeC
Confidence            9999887 32 3346899999999

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain

Probab=99.36  E-value=1.1e-11  Score=114.06  Aligned_cols=133  Identities=20%  Similarity=0.310  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCc-EEEEcCCCCChHHHHH
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAKVLL   82 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~p-tyfv~GNh~~~~~~l~   82 (604)
                      ||++++|+||++.       .+  ...+.|+||++||++.... ...+.+.+++.   +.+.+ +++|.||||..     
T Consensus         1 ~i~~isD~H~~~~-------~~--~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~---~~~~~~~~~v~GNHD~~-----   63 (135)
T cd07379           1 RFVCISDTHSRHR-------TI--SIPDGDVLIHAGDLTERGTLEELQKFLDWLK---SLPHPHKIVIAGNHDLT-----   63 (135)
T ss_pred             CEEEEeCCCCCCC-------cC--cCCCCCEEEECCCCCCCCCHHHHHHHHHHHH---hCCCCeEEEEECCCCCc-----
Confidence            6999999999976       11  1235899999999975432 22233555553   34444 58899999731     


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE  162 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~  162 (604)
                                  . .                                                      ..+.+|||||.
T Consensus        64 ------------~-~------------------------------------------------------~~~~~ilv~H~   76 (135)
T cd07379          64 ------------L-D------------------------------------------------------PEDTDILVTHG   76 (135)
T ss_pred             ------------C-C------------------------------------------------------CCCCEEEEECC
Confidence                        0 0                                                      03579999999


Q ss_pred             CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415          163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA  231 (604)
Q Consensus       163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~  231 (604)
                      +|.++.+....        ....|+..+.++++..+|+|+|+||.|..+... .+ .+....|.+||.|
T Consensus        77 ~p~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~-~~~~~~t~~in~~  135 (135)
T cd07379          77 PPYGHLDLVSS--------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE-RV-LDTDGETLFVNAS  135 (135)
T ss_pred             CCCcCcccccc--------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee-Ee-cccCCCEEEEeCC
Confidence            99987543221        136899999999999999999999988765322 22 2245689999875

239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=99.34  E-value=3.6e-12  Score=107.73  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             EEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe-e-ccCCCCee
Q 007415          406 VSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE-W-LSKRGTHA  479 (604)
Q Consensus       406 vs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~~~v~~E-~-~~~~~~H~  479 (604)
                      |++++++++++|..|..+||+||||++|+.++.+++++++.++....+.+.+.+++    .+++++++. . +++...|+
T Consensus         1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~   80 (86)
T cd00468           1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV   80 (86)
T ss_pred             CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence            46899999999999999999999999999999999999999999888777766643    344444443 2 23346899


Q ss_pred             EEEEEe
Q 007415          480 NLQAVP  485 (604)
Q Consensus       480 HihvvP  485 (604)
                      |+|+||
T Consensus        81 H~hiiP   86 (86)
T cd00468          81 HLHVLP   86 (86)
T ss_pred             EEEeCC
Confidence            999998

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>TIGR03729 acc_ester putative phosphoesterase

Probab=99.25  E-value=9.7e-11  Score=118.46  Aligned_cols=200  Identities=13%  Similarity=0.044  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCCHHH-----HHHH-HHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415            5 RILLCGDVLGRLNQ-----LFKR-VQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         5 KILv~GDvhG~~~~-----l~~k-v~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      ||++++|+|.++..     .+++ ++.+++ . ++|+||++||++....... .+.+.+..  ..++|+|+|+||||...
T Consensus         1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~-~-~~d~vv~~GDl~~~~~~~~-~~~~~l~~--~~~~pv~~v~GNHD~~~   75 (239)
T TIGR03729         1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKK-Q-KIDHLHIAGDISNDFQRSL-PFIEKLQE--LKGIKVTFNAGNHDMLK   75 (239)
T ss_pred             CEEEEEeecCCCCCCCHHHHHHHHHHHHHh-c-CCCEEEECCccccchhhHH-HHHHHHHH--hcCCcEEEECCCCCCCC
Confidence            69999999975321     1222 233332 3 4899999999986432211 22222211  14589999999998521


Q ss_pred             H-HHHHHhccccccCcccCCceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCC--------------------CCCCC
Q 007415           79 K-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEG--------------------QQFGT  136 (604)
Q Consensus        79 ~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~--------------------~~~~~  136 (604)
                      . ....+..          .    .+..+|.+..+. ..++++|.|+.|-...+.                    .....
T Consensus        76 ~~~~~~~~~----------~----~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~  141 (239)
T TIGR03729        76 DLTYEEIES----------N----DSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRP  141 (239)
T ss_pred             CCCHHHHHh----------c----cchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCC
Confidence            1 1121210          0    034455543332 237889999997433210                    00111


Q ss_pred             -----CCHHHHHHHHH-hhcCCCCccEEEeCCCCcccccc--ccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC
Q 007415          137 -----YSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNK--AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG  208 (604)
Q Consensus       137 -----~te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~--~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~  208 (604)
                           +.+++++.|.+ +++...+--||+||-+|......  .+.. .-... ....||..+.+++++.+|++|||||.|
T Consensus       142 ~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~-~~~~~-~~~~~s~~l~~li~~~~v~~~i~GH~H  219 (239)
T TIGR03729       142 MSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHR-RFDMF-NAFLGSQHFGQLLVKYEIKDVIFGHLH  219 (239)
T ss_pred             CChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCc-chhhh-hhccChHHHHHHHHHhCCCEEEECCcc
Confidence                 12333344443 22233456899999999653210  0000 00000 125789999999999999999999987


Q ss_pred             CcccccccccCCCcceeEEEEcC
Q 007415          209 VFYAREPYSNVDAVHVTRFLGLA  231 (604)
Q Consensus       209 ~fyEr~Py~~~~~~~~TRFI~L~  231 (604)
                      ..+...      ..+.||+++-.
T Consensus       220 ~~~~~~------~i~~~~~~~~~  236 (239)
T TIGR03729       220 RRFGPL------TIGGTTYHNRP  236 (239)
T ss_pred             CCCCCE------EECCEEEEecC
Confidence            654311      23579998743

Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain

Probab=99.20  E-value=7.7e-10  Score=111.37  Aligned_cols=197  Identities=16%  Similarity=0.116  Sum_probs=119.9

Q ss_pred             EEEEEcCCCCC------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEEc
Q 007415            5 RILLCGDVLGR------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIG   71 (604)
Q Consensus         5 KILv~GDvhG~------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~   71 (604)
                      ||++++|+|=.            ...+-+.++.+++...++|+||++||+..... ..-+.+.+.+   .+.++|+|+|+
T Consensus         1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l---~~~~~p~~~v~   77 (240)
T cd07402           1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELL---AALPIPVYLLP   77 (240)
T ss_pred             CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHH---hhcCCCEEEeC
Confidence            68999999943            12233334444444346899999999976532 2222344444   44589999999


Q ss_pred             CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhh-c
Q 007415           72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA-E  150 (604)
Q Consensus        72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~-~  150 (604)
                      ||||....+...+..         ...   .+ .+.  .-.+.++|++|.+|.......  ....++++.+.-|.+.. .
T Consensus        78 GNHD~~~~~~~~~~~---------~~~---~~-~~~--~~~~~~~~~~~i~lds~~~~~--~~~~~~~~ql~wL~~~L~~  140 (240)
T cd07402          78 GNHDDRAAMRAVFPE---------LPP---AP-GFV--QYVVDLGGWRLILLDSSVPGQ--HGGELCAAQLDWLEAALAE  140 (240)
T ss_pred             CCCCCHHHHHHhhcc---------ccc---cc-ccc--ceeEecCCEEEEEEeCCCCCC--cCCEECHHHHHHHHHHHHh
Confidence            999974333332220         000   00 001  124567899999997654321  22345677776666532 2


Q ss_pred             CCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEEEE
Q 007415          151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLG  229 (604)
Q Consensus       151 ~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~  229 (604)
                      .....-|+++|.+|........     ..  .....+..+.+++.+. +++++|+||.|..+.+       ....+++++
T Consensus       141 ~~~~~~il~~H~pp~~~~~~~~-----~~--~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~-------~~~g~~~~~  206 (240)
T cd07402         141 APDKPTLVFLHHPPFPVGIAWM-----DA--IGLRNAEALAAVLARHPNVRAILCGHVHRPIDG-------SWGGIPLLT  206 (240)
T ss_pred             CCCCCEEEEECCCCccCCchhh-----hh--hhCCCHHHHHHHHhcCCCeeEEEECCcCchHHe-------EECCEEEEE
Confidence            2345679999999987632100     00  0234678888999998 8999999998875322       123578888


Q ss_pred             cCCCCC
Q 007415          230 LAPVGN  235 (604)
Q Consensus       230 L~~~gn  235 (604)
                      .|..+.
T Consensus       207 ~gs~~~  212 (240)
T cd07402         207 APSTCH  212 (240)
T ss_pred             cCccee
Confidence            887764

GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11

Probab=99.17  E-value=1.2e-10  Score=107.41  Aligned_cols=193  Identities=12%  Similarity=0.090  Sum_probs=98.2

Q ss_pred             CEEEEEcCCCCCHHHH---HHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHH--hcccCCCCCcEEEEcCCCCChH
Q 007415            4 PRILLCGDVLGRLNQL---FKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNY--VEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l---~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~--l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      |||+++||+|+.....   ...+.....+. +.|+||++||++.............  .......++|+|++.||||...
T Consensus         1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~-~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~   79 (200)
T PF00149_consen    1 MRILVISDLHGGYDDDSDAFRKLDEIAAEN-KPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS   79 (200)
T ss_dssp             EEEEEEEBBTTTHHHHCHHHHHHHHHHHHT-TTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred             CeEEEEcCCCCCCcchhHHHHHHHHHhccC-CCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence            6999999999998877   45555544444 5899999999977644322222111  1222457799999999999764


Q ss_pred             HHHHHHhccccccCcccCCceecCCEEEcCCCC-eEEEcCcEEEEEecccCCCCCCCCCCCHHHHHH-HHHhhcCCCCcc
Q 007415           79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG-NFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-LRALAEEPGIVD  156 (604)
Q Consensus        79 ~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~g-v~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~-L~~l~~~~~~vD  156 (604)
                      ...........     ........+..+....+ .....................  .......... ...+........
T Consensus        80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
T PF00149_consen   80 GNSFYGFYDYQ-----FEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYG--MEAQQEWWLWLLLLLEAKNDDPV  152 (200)
T ss_dssp             HHHHHHHHHHH-----HSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSE--HHHHHHHHHHHHHHHHEEEESEE
T ss_pred             ecccccccccc-----ccccccccccccccCcceeeecccccccccccccccccc--cccchhcccccccccccccccce
Confidence            32221110000     00000111111111001 000111111111110000000  0000011111 111222335688


Q ss_pred             EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415          157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF  210 (604)
Q Consensus       157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f  210 (604)
                      |+++|.+|.........   .   .....+...+..+.+..++.++|+||.|.|
T Consensus       153 iv~~H~p~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~  200 (200)
T PF00149_consen  153 IVFTHHPPYSSSSDSSS---Y---GNESKGREALEELLKKYNVDLVLSGHTHRY  200 (200)
T ss_dssp             EEEESSSSSTTSSSTHH---H---SSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred             eEEEecCCCCccccccc---c---chhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence            99999999987542210   0   001357788999999999999999998864

The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....

>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1

Probab=99.09  E-value=2e-10  Score=121.93  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=78.3

Q ss_pred             CCCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c---
Q 007415          389 KECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q---  462 (604)
Q Consensus       389 ~~C~FC~~~~~-~-~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~---  462 (604)
                      ..|.||.+... . ....||++++++++++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+.+ .   
T Consensus       194 g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~  273 (347)
T TIGR00209       194 KSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS  273 (347)
T ss_pred             CCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            47999987643 2 2456899999999999999999999999999999999999999999999887777766543 2   


Q ss_pred             -CCceEEEe-eccCC---CCeeEEEEEec
Q 007415          463 -GKEAVFFE-WLSKR---GTHANLQAVPI  486 (604)
Q Consensus       463 -g~~~v~~E-~~~~~---~~H~HihvvPv  486 (604)
                       +++.++.. ..+..   ..|+|+|++|+
T Consensus       274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPr  302 (347)
T TIGR00209       274 FPYSMGWHGAPFNGEENQHWQLHAHFYPP  302 (347)
T ss_pred             CCcceeEEecccCCCCCcEEEEEEEEeCC
Confidence             46666665 22222   25799999997

This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.

>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional

Probab=99.09  E-value=2.4e-10  Score=121.20  Aligned_cols=98  Identities=13%  Similarity=0.053  Sum_probs=77.9

Q ss_pred             CCCcccCCCCC-CC-cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Q 007415          389 KECWFCLSSPS-VE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----  461 (604)
Q Consensus       389 ~~C~FC~~~~~-~~-~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-----  461 (604)
                      ..|.||.+... .+ ...||+.++++++++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+..     
T Consensus       194 g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~  273 (346)
T PRK11720        194 GSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCS  273 (346)
T ss_pred             CCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            47999987643 22 246899999999999999999999999999999999999999999999877766665543     


Q ss_pred             cCCceEEEe-eccC---CCCeeEEEEEec
Q 007415          462 QGKEAVFFE-WLSK---RGTHANLQAVPI  486 (604)
Q Consensus       462 ~g~~~v~~E-~~~~---~~~H~HihvvPv  486 (604)
                      .++++++.. -.+.   ...|+|+|++|+
T Consensus       274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPr  302 (346)
T PRK11720        274 FPYSMGWHGAPFNGEENDHWQLHAHFYPP  302 (346)
T ss_pred             CCCceeEEecccCCCCCeeEEEEEEEeCC
Confidence            246666665 1122   247999999997

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain

Probab=99.03  E-value=7.9e-09  Score=104.18  Aligned_cols=178  Identities=12%  Similarity=0.092  Sum_probs=101.5

Q ss_pred             EEEEcCCCCC---------HH----HHHHHHHHHHhh-cCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEE
Q 007415            6 ILLCGDVLGR---------LN----QLFKRVQSVNKS-AGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFI   70 (604)
Q Consensus         6 ILv~GDvhG~---------~~----~l~~kv~~l~~k-~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv   70 (604)
                      |.+++|.|-.         +.    .+.+++.+.-.+ ..+.|+||++||+..... .......++|   ...+.|+|+|
T Consensus         1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l---~~l~~~v~~V   77 (232)
T cd07393           1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWI---DALPGTKVLL   77 (232)
T ss_pred             CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHH---HhCCCCeEEE
Confidence            5789999955         22    333344333222 235899999999974322 1111223344   3456789999


Q ss_pred             cCCCCCh----HHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecc-cCCCCC-----C-----CC
Q 007415           71 GDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGR-QSSEGQ-----Q-----FG  135 (604)
Q Consensus        71 ~GNh~~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~-~~~~~~-----~-----~~  135 (604)
                      +||||-.    ..+.+.+.                ++.+++.....+.+++++|+|+.+. .+....     +     ..
T Consensus        78 ~GNHD~~~~~~~~~~~~l~----------------~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~  141 (232)
T cd07393          78 KGNHDYWWGSASKLRKALE----------------ESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDE  141 (232)
T ss_pred             eCCccccCCCHHHHHHHHH----------------hcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHH
Confidence            9999941    22222232                1222222245667889999988652 221110     0     00


Q ss_pred             CCCHHHHHHHHH----hhcC-CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415          136 TYSQDDVDALRA----LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF  210 (604)
Q Consensus       136 ~~te~d~~~L~~----l~~~-~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f  210 (604)
                      .+..++...|..    .... ..+.-|+++|.+|....                .++..+.+++++..+.+.|+||.|.+
T Consensus       142 ~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~----------------~~~~~~~~~~~~~~v~~vl~GH~H~~  205 (232)
T cd07393         142 KIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN----------------GDDSPISKLIEEYGVDICVYGHLHGV  205 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC----------------CCHHHHHHHHHHcCCCEEEECCCCCC
Confidence            112233333332    1111 12367999999986541                24456778888889999999999988


Q ss_pred             cccccccc
Q 007415          211 YAREPYSN  218 (604)
Q Consensus       211 yEr~Py~~  218 (604)
                      ....||..
T Consensus       206 ~~~~~~~~  213 (232)
T cd07393         206 GRDRAING  213 (232)
T ss_pred             cccccccc
Confidence            77777743

DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat

>TIGR00040 yfcE phosphoesterase, MJ0936 family

Probab=98.99  E-value=9.6e-09  Score=97.13  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |||++++|+||+...+- .+.++.+.....|.||++||+.+.      ++.+++   .+...|+++|.||||.
T Consensus         1 m~i~viSD~H~~~~~~~-~~~~~~~~~~~~d~ii~~GD~~~~------~~~~~l---~~~~~~~~~V~GN~D~   63 (158)
T TIGR00040         1 MKILVISDTHGPLRATE-LPVELFNLESNVDLVIHAGDLTSP------FVLKEF---EDLAAKVIAVRGNNDG   63 (158)
T ss_pred             CEEEEEecccCCcchhH-hHHHHHhhccCCCEEEEcCCCCCH------HHHHHH---HHhCCceEEEccCCCc
Confidence            79999999999986433 333333333258999999999832      133444   2345689999999985

Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []

Probab=98.98  E-value=3.8e-09  Score=98.64  Aligned_cols=141  Identities=16%  Similarity=0.235  Sum_probs=87.4

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      |||+++||+|++.+.+-+.++.+   + ..|+||++||++..     .++.+.+..   +  |+|+|.||||...  +..
T Consensus         1 Mki~~~sD~H~~~~~~~~~~~~~---~-~~d~vi~~GDi~~~-----~~~~~~~~~---~--~~~~v~GNHD~~~--~~~   64 (156)
T PF12850_consen    1 MKIAVISDLHGNLDALEAVLEYI---N-EPDFVIILGDIFDP-----EEVLELLRD---I--PVYVVRGNHDNWA--FPN   64 (156)
T ss_dssp             EEEEEEE--TTTHHHHHHHHHHH---T-TESEEEEES-SCSH-----HHHHHHHHH---H--EEEEE--CCHSTH--HHS
T ss_pred             CEEEEEeCCCCChhHHHHHHHHh---c-CCCEEEECCCchhH-----HHHHHHHhc---C--CEEEEeCCccccc--chh
Confidence            89999999999998755555554   2 38999999999873     335555532   2  8999999998532  111


Q ss_pred             HhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCC
Q 007415           84 ASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEW  163 (604)
Q Consensus        84 l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~w  163 (604)
                      ..           ..+.      +...-..++                                     .+..|+++|--
T Consensus        65 ~~-----------~~~~------~~~~~~~~~-------------------------------------~~~~i~~~H~~   90 (156)
T PF12850_consen   65 EN-----------DEEY------LLDALRLTI-------------------------------------DGFKILLSHGH   90 (156)
T ss_dssp             EE-----------CTCS------SHSEEEEEE-------------------------------------TTEEEEEESST
T ss_pred             hh-----------hccc------cccceeeee-------------------------------------cCCeEEEECCC
Confidence            00           0000      000001111                                     24678888887


Q ss_pred             CccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcc
Q 007415          164 PSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE  237 (604)
Q Consensus       164 P~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~  237 (604)
                      |..+.                .+...+.+++...+++++|+||.|..+...       ...+.++++|.++...
T Consensus        91 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------~~~~~~~~~Gs~~~~~  141 (156)
T PF12850_consen   91 PYDVQ----------------WDPAELREILSRENVDLVLHGHTHRPQVFK-------IGGIHVINPGSIGGPR  141 (156)
T ss_dssp             SSSST----------------TTHHHHHHHHHHTTSSEEEESSSSSEEEEE-------ETTEEEEEE-GSSS-S
T ss_pred             Ccccc----------------cChhhhhhhhcccCCCEEEcCCcccceEEE-------ECCEEEEECCcCCCCC
Confidence            66542                345567788889999999999988765532       3359999999998643

; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....

>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]

Probab=98.97  E-value=3.6e-09  Score=94.47  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=70.4

Q ss_pred             CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC-C-c-eEEEe---ecc
Q 007415          400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG-K-E-AVFFE---WLS  473 (604)
Q Consensus       400 ~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g-~-~-~v~~E---~~~  473 (604)
                      +...-|.+...++|++.+..|+.|||+||+|++-++.+.+|+.++.++|..-.+.+.++++..- . . .|.+.   .++
T Consensus        14 i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG   93 (150)
T KOG3379|consen   14 IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG   93 (150)
T ss_pred             CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence            3444588999999999999999999999999999999999999999999988877777777532 1 1 22232   355


Q ss_pred             CCCCeeEEEEEec
Q 007415          474 KRGTHANLQAVPI  486 (604)
Q Consensus       474 ~~~~H~HihvvPv  486 (604)
                      +.++|+|+|++|+
T Consensus        94 QTVpHvHvHIlPR  106 (150)
T KOG3379|consen   94 QTVPHVHVHILPR  106 (150)
T ss_pred             cccceeEEEEccc
Confidence            5579999999996

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain

Probab=98.97  E-value=4.3e-09  Score=96.39  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCC
Q 007415          155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~  233 (604)
                      ++||++|.||.++....+         ....|+..+.+++...+|+++++||.|..+... =++ .....|++||.+-+
T Consensus        57 ~~Ilv~H~pp~~~~~~~~---------~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~-~~~-~~~~~t~~~n~~~~  124 (129)
T cd07403          57 VDILLTHAPPAGIGDGED---------FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ-LRI-RRVGDTTVINAYGY  124 (129)
T ss_pred             cCEEEECCCCCcCcCccc---------ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc-ccc-cccCCEEEEeCCcE
Confidence            489999999987753211         135799999999999999999999988654321 000 13668999998754

TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain

Probab=98.96  E-value=3.7e-09  Score=100.66  Aligned_cols=150  Identities=9%  Similarity=0.030  Sum_probs=85.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHh
Q 007415            6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS   85 (604)
Q Consensus         6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~   85 (604)
                      |++++|+|+++......+.+.. ...++|+|+++||++......  .+..++ .....+.|+|+|+||||.         
T Consensus         1 ~~~iSDlH~~~~~~~~~~~~~~-~~~~~d~li~~GDi~~~~~~~--~~~~~~-~~~~~~~~v~~v~GNHD~---------   67 (166)
T cd07404           1 IQYLSDLHLEFEDNLADLLNFP-IAPDADILVLAGDIGYLTDAP--RFAPLL-LALKGFEPVIYVPGNHEF---------   67 (166)
T ss_pred             CceEccccccCccccccccccC-CCCCCCEEEECCCCCCCcchH--HHHHHH-HhhcCCccEEEeCCCcce---------
Confidence            5789999999765433221111 223589999999998653221  111111 224467899999999972         


Q ss_pred             ccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 007415           86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS  165 (604)
Q Consensus        86 ~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~  165 (604)
                                          +           ++++|.++-..     ...++++.+   ....+...+-.|++||-+|.
T Consensus        68 --------------------~-----------~~~~G~~~w~~-----~~~~~~~~~---~~~~~d~~~~~vv~~HhpP~  108 (166)
T cd07404          68 --------------------Y-----------VRIIGTTLWSD-----ISLFGEAAA---RMRMNDFRGKTVVVTHHAPS  108 (166)
T ss_pred             --------------------E-----------EEEEeeecccc-----cCccchHHH---HhCCCCCCCCEEEEeCCCCC
Confidence                                1           23333332111     112233322   22222334678999999998


Q ss_pred             cccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          166 GVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       166 gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                      ........   ..... ...++..+.++++..+++++||||.|..+
T Consensus       109 ~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~v~~~i~GH~H~~~  150 (166)
T cd07404         109 PLSLAPQY---GDSLV-NAAFAVDLDDLILADPIDLWIHGHTHFNF  150 (166)
T ss_pred             ccccCccc---cCCCc-chhhhhccHhHHhhcCCCEEEECCccccc
Confidence            75321100   00100 11455567888888999999999987653

MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t

>PLN02643 ADP-glucose phosphorylase

Probab=98.91  E-value=3.8e-09  Score=111.83  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGK  464 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~  464 (604)
                      ..|.||.+.... .  ||+.++++.+++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+.    ..++
T Consensus       198 g~Clfcdii~~E-~--iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~py  274 (336)
T PLN02643        198 GKCSLCEVVKKD-L--LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPY  274 (336)
T ss_pred             CCCcHHHHHhCc-c--EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            379999976432 2  89999999999999999999999999999999999999999999988776665543    2367


Q ss_pred             ceEEEe-ec---cCCC--CeeEEEEEec
Q 007415          465 EAVFFE-WL---SKRG--THANLQAVPI  486 (604)
Q Consensus       465 ~~v~~E-~~---~~~~--~H~HihvvPv  486 (604)
                      ++++.. -.   .+..  .|+|+|++|+
T Consensus       275 N~~~~~~P~~~~~~~~~~~H~hihi~PR  302 (336)
T PLN02643        275 NYMIQTSPLGVEESNLPYTHWFLQIVPQ  302 (336)
T ss_pred             eeeeecCCCccccCcccceEEEEEEecC
Confidence            777766 12   1122  4667799996

>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate

Probab=98.90  E-value=3e-09  Score=112.65  Aligned_cols=100  Identities=17%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             CCCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Q 007415          389 KECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----  461 (604)
Q Consensus       389 ~~C~FC~~~~~-~-~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-----  461 (604)
                      ..|.||.+... . ....||+.++++.+++|-.|..|+|+||||++|+.++.+++++++.+|....+.+.+.+.+     
T Consensus       184 g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~  263 (329)
T cd00608         184 GRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS  263 (329)
T ss_pred             CCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            47999987532 2 2356899999999999999999999999999999999999999999999887777655442     


Q ss_pred             cCCceEEEe-eccC-----CCCeeEEEEEecCc
Q 007415          462 QGKEAVFFE-WLSK-----RGTHANLQAVPIPT  488 (604)
Q Consensus       462 ~g~~~v~~E-~~~~-----~~~H~HihvvPvp~  488 (604)
                      .++++++.. ..+.     ...|+|+|++|+-.
T Consensus       264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~  296 (329)
T cd00608         264 FPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS  296 (329)
T ss_pred             CCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence            345666654 1221     24699999988643

The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional

Probab=98.89  E-value=1.1e-07  Score=98.21  Aligned_cols=179  Identities=16%  Similarity=0.215  Sum_probs=98.2

Q ss_pred             CCCEEEEEcCCC-CC-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEE
Q 007415            2 SPPRILLCGDVL-GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYF   69 (604)
Q Consensus         2 ~~~KILv~GDvh-G~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyf   69 (604)
                      .+|||+.++|+| ..           .+.+-+.++.+++...+.|+||++||+....+.  +++..++....++++|+|+
T Consensus        13 ~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~--~~~~~~~~~l~~l~~Pv~~   90 (275)
T PRK11148         13 ARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSS--EAYQHFAEGIAPLRKPCVW   90 (275)
T ss_pred             CCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCH--HHHHHHHHHHhhcCCcEEE
Confidence            358999999999 11           122333344454443358999999999765321  2233333333567899999


Q ss_pred             EcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhh
Q 007415           70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA  149 (604)
Q Consensus        70 v~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~  149 (604)
                      ++||||....+.+.+...         +  +.++      ..++..++.++..|.....  ......+.+++++-|.+..
T Consensus        91 v~GNHD~~~~~~~~~~~~---------~--~~~~------~~~~~~~~~~~i~Lds~~~--g~~~G~l~~~ql~wL~~~L  151 (275)
T PRK11148         91 LPGNHDFQPAMYSALQDA---------G--ISPA------KHVLIGEHWQILLLDSQVF--GVPHGELSEYQLEWLERKL  151 (275)
T ss_pred             eCCCCCChHHHHHHHhhc---------C--CCcc------ceEEecCCEEEEEecCCCC--CCcCCEeCHHHHHHHHHHH
Confidence            999999744444433210         0  1111      0111223456666654321  1112456777777666532


Q ss_pred             -cCCCCccEEEeCCCC--ccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCc
Q 007415          150 -EEPGIVDLFLTNEWP--SGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVF  210 (604)
Q Consensus       150 -~~~~~vDILLTh~wP--~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~f  210 (604)
                       ......-|++.|..|  .+..- .+      .  .....+..+.+++++. +.+.+||||.|..
T Consensus       152 ~~~~~~~~vv~~hH~P~~~~~~~-~d------~--~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~  207 (275)
T PRK11148        152 ADAPERHTLVLLHHHPLPAGCAW-LD------Q--HSLRNAHELAEVLAKFPNVKAILCGHIHQE  207 (275)
T ss_pred             hhCCCCCeEEEEcCCCCCCCcch-hh------c--cCCCCHHHHHHHHhcCCCceEEEecccChH
Confidence             222222344454444  33211 01      0  0134667888999887 7899999998864

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain

Probab=98.85  E-value=6.5e-08  Score=90.85  Aligned_cols=133  Identities=17%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHH
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA   84 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l   84 (604)
                      ||++++|+||+.+.+...++.+.    ..|.||++||+.......     .     .....|+++|.||||... .    
T Consensus         1 ~i~~isD~H~~~~~~~~~~~~~~----~~d~ii~~GD~~~~~~~~-----~-----~~~~~~~~~V~GNhD~~~-~----   61 (155)
T cd00841           1 KIGVISDTHGSLELLEKALELFG----DVDLIIHAGDVLYPGPLN-----E-----LELKAPVIAVRGNCDGEV-D----   61 (155)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhc----CCCEEEECCccccccccc-----h-----hhcCCcEEEEeCCCCCcC-C----
Confidence            69999999999865544444332    279999999986643211     0     234578999999998420 0    


Q ss_pred             hccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCC
Q 007415           85 SKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWP  164 (604)
Q Consensus        85 ~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP  164 (604)
                                         +..+....+++++|                                     .-|+++|-++
T Consensus        62 -------------------~~~~p~~~~~~~~g-------------------------------------~~i~v~Hg~~   85 (155)
T cd00841          62 -------------------FPILPEEAVLEIGG-------------------------------------KRIFLTHGHL   85 (155)
T ss_pred             -------------------cccCCceEEEEECC-------------------------------------EEEEEECCcc
Confidence                               00011011222333                                     4567777776


Q ss_pred             ccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415          165 SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK  236 (604)
Q Consensus       165 ~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~  236 (604)
                      ......                ... .+++......|+++||.|..+.+.       ...+++||.|.++.+
T Consensus        86 ~~~~~~----------------~~~-~~~~~~~~~d~vi~GHtH~~~~~~-------~~~~~~inpGs~~~~  133 (155)
T cd00841          86 YGVKNG----------------LDR-LYLAKEGGADVVLYGHTHIPVIEK-------IGGVLLLNPGSLSLP  133 (155)
T ss_pred             cccccc----------------hhh-hhhhhhcCCCEEEECcccCCccEE-------ECCEEEEeCCCccCc
Confidence            554210                011 455667788999999988764421       235899999999865

YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain

Probab=98.83  E-value=3.8e-08  Score=87.68  Aligned_cols=131  Identities=19%  Similarity=0.242  Sum_probs=87.5

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhc
Q 007415            7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK   86 (604)
Q Consensus         7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~   86 (604)
                      +++||+|+..............+..+.|+||++||++.............+........|++++.||||           
T Consensus         1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD-----------   69 (131)
T cd00838           1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD-----------   69 (131)
T ss_pred             CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----------
Confidence            579999999887766542223333467999999999776432211111112233567899999999973           


Q ss_pred             cccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 007415           87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG  166 (604)
Q Consensus        87 ~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~g  166 (604)
                                                                                            |+++|.+|..
T Consensus        70 ----------------------------------------------------------------------i~~~H~~~~~   79 (131)
T cd00838          70 ----------------------------------------------------------------------ILLTHGPPYD   79 (131)
T ss_pred             ----------------------------------------------------------------------EEEeccCCCC
Confidence                                                                                  8899999987


Q ss_pred             ccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415          167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA  231 (604)
Q Consensus       167 i~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~  231 (604)
                      .......        ........+..++...+|.++|+||.|.++...+     ....+++|++|
T Consensus        80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~-----~~~~~~~v~~g  131 (131)
T cd00838          80 PLDELSP--------DEDPGSEALLELLEKYGVDLVLSGHTHVYERREP-----DGGGTLYINPG  131 (131)
T ss_pred             Cchhhcc--------cchhhHHHHHHHHHHhCCCEEEeCCeeccccccC-----CCCceEEecCC
Confidence            6542221        0122578899999999999999999988766543     12245566543

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me

>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B

Probab=98.81  E-value=4.9e-09  Score=94.25  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC----
Q 007415          390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKNQGK----  464 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~-H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~----  464 (604)
                      +|.||.+....+...|++.++.+.++-+..|.++-|+||||++ |+.|+.+|+.+-..-+.+++....++++..+.    
T Consensus         1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~   80 (116)
T PF11969_consen    1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD   80 (116)
T ss_dssp             HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred             CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4999998866556668899999999999999999999999999 99999999887766666666666666554321    


Q ss_pred             --c-eEEEeeccCCCCeeEEEEEecCcc
Q 007415          465 --E-AVFFEWLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       465 --~-~v~~E~~~~~~~H~HihvvPvp~~  489 (604)
                        . .+.|- ......|+|+|||..+..
T Consensus        81 ~~~~~~gfH-~~PS~~HLHlHvi~~~~~  107 (116)
T PF11969_consen   81 SDDIRLGFH-YPPSVYHLHLHVISPDFD  107 (116)
T ss_dssp             GGGEEEEEE-SS-SSSS-EEEEEETTS-
T ss_pred             hhhhccccc-CCCCcceEEEEEccCCCc
Confidence              1 23333 333467999999997654

>PRK09453 phosphodiesterase; Provisional

Probab=98.76  E-value=1.7e-07  Score=90.87  Aligned_cols=68  Identities=7%  Similarity=0.082  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |||++++|+||++.. ++++.+..++. +.|.||++||++....       ....++.+.+   .+.+.++++|.||||.
T Consensus         1 mri~viSD~Hg~~~~-~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l---~~~~~~v~~V~GNhD~   75 (182)
T PRK09453          1 MKLMFASDTHGSLPA-TEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELL---NAYADKIIAVRGNCDS   75 (182)
T ss_pred             CeEEEEEeccCCHHH-HHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHH---HhcCCceEEEccCCcc
Confidence            799999999999865 44444443334 4799999999975311       0123344554   3445689999999984

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain

Probab=98.75  E-value=2.2e-07  Score=92.45  Aligned_cols=162  Identities=16%  Similarity=0.165  Sum_probs=90.9

Q ss_pred             CCEEEEEcCCCCCHH----HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415            3 PPRILLCGDVLGRLN----QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         3 ~~KILv~GDvhG~~~----~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      .|||++++|+|....    .+-+.++.+. +. ..|+||++||++.........+.+++.. ...+.|+|++.||||...
T Consensus         1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~-~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~-l~~~~~v~~v~GNHD~~~   77 (223)
T cd07385           1 GLRIAHLSDLHLGPFVSRERLERLVEKIN-AL-KPDLVVLTGDLVDGSVDVLELLLELLKK-LKAPLGVYAVLGNHDYYS   77 (223)
T ss_pred             CCEEEEEeecCCCccCCHHHHHHHHHHHh-cc-CCCEEEEcCcccCCcchhhHHHHHHHhc-cCCCCCEEEECCCccccc
Confidence            389999999998643    2222233333 23 4799999999987543322345566643 235689999999999642


Q ss_pred             HH----HHHHhccccccCcccCCceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCC
Q 007415           79 KV----LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPG  153 (604)
Q Consensus        79 ~~----l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~  153 (604)
                      ..    .+.+.               ..++.+|....+. +..|.+|.-+|-......      .+.....+...  ...
T Consensus        78 ~~~~~~~~~l~---------------~~~v~~L~~~~~~~~~~~~~i~i~G~~~~~~~------~~~~~~~~~~~--~~~  134 (223)
T cd07385          78 GDEENWIEALE---------------SAGITVLRNESVEISVGGATIGIAGVDDGLGR------RPDLEKALKGL--DED  134 (223)
T ss_pred             CchHHHHHHHH---------------HcCCEEeecCcEEeccCCeEEEEEeccCcccc------CCCHHHHHhCC--CCC
Confidence            21    12221               1356666654432 456777766662211100      01111122221  235


Q ss_pred             CccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccc
Q 007415          154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREP  215 (604)
Q Consensus       154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~P  215 (604)
                      .+.|+|+|. |..+..                        +.....-|.++||.|.+==+.|
T Consensus       135 ~~~I~l~H~-P~~~~~------------------------~~~~~~dl~l~GHtHggqi~~~  171 (223)
T cd07385         135 DPNILLAHQ-PDTAEE------------------------AAAWGVDLQLSGHTHGGQIRLP  171 (223)
T ss_pred             CCEEEEecC-CChhHH------------------------hcccCccEEEeccCCCCEEecc
Confidence            689999997 332211                        0344677999999886533443

YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain

Probab=98.71  E-value=5.4e-07  Score=92.75  Aligned_cols=195  Identities=17%  Similarity=0.124  Sum_probs=103.4

Q ss_pred             EEEEEcCCC--CC-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh----hhHHHHHHHhcccCCCCCcE
Q 007415            5 RILLCGDVL--GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMNYVEGRSEIPIPT   67 (604)
Q Consensus         5 KILv~GDvh--G~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~----~~~~~~~~~l~g~~~~p~pt   67 (604)
                      ||++++|+|  .+           .+.+-+.++.+++.  ++|+||++||+.....    ...+.+.+.+   ..+++|+
T Consensus         2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l---~~l~~p~   76 (267)
T cd07396           2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDNARAEEALDAVLAIL---DRLKGPV   76 (267)
T ss_pred             eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCCchHHHHHHHHHHHH---HhcCCCE
Confidence            799999999  21           23333445555543  3899999999965432    2222334444   4567999


Q ss_pred             EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCC-CCeEEEcCcEEEEEecccCCCC----C----------
Q 007415           68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEG----Q----------  132 (604)
Q Consensus        68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~----~----------  132 (604)
                      |+++||||...........              . .....+. .-.++.+|.++.+|-+......    .          
T Consensus        77 ~~v~GNHD~~~~~~~~~~~--------------~-~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~  141 (267)
T cd07396          77 HHVLGNHDLYNPSREYLLL--------------Y-TLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDN  141 (267)
T ss_pred             EEecCccccccccHhhhhc--------------c-cccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHh
Confidence            9999999853211111100              0 0000110 0122346778888876421100    0          


Q ss_pred             --------------CCCCCCHHHHHHHHHh-hcC--CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHH
Q 007415          133 --------------QFGTYSQDDVDALRAL-AEE--PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVA  195 (604)
Q Consensus       133 --------------~~~~~te~d~~~L~~l-~~~--~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~  195 (604)
                                    ....++++++.-|.+. +..  ....=|+++|.+|..... ..     ..   .......+.++++
T Consensus       142 ~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~-~~-----~~---~~~~~~~~~~ll~  212 (267)
T cd07396         142 SNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPEST-SP-----HG---LLWNHEEVLSILR  212 (267)
T ss_pred             chhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCC-Cc-----cc---cccCHHHHHHHHH
Confidence                          0124456666655542 211  112238999998754321 11     00   1223466778887


Q ss_pred             Hh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          196 EI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       196 ~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      .. +.+++|+||.|......       ...+.++..+....
T Consensus       213 ~~~~V~~v~~GH~H~~~~~~-------~~gi~~~~~~a~~~  246 (267)
T cd07396         213 AYGCVKACISGHDHEGGYAQ-------RHGIHFLTLEGMVE  246 (267)
T ss_pred             hCCCEEEEEcCCcCCCCccc-------cCCeeEEEechhhc
Confidence            74 67899999988764322       22355555555443

Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain

Probab=98.60  E-value=8.7e-07  Score=82.06  Aligned_cols=116  Identities=16%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             EEEEcCCCCCHH--HH-H------HHHHHHHhhcCCCcEEEEecCCCCCChh-hHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415            6 ILLCGDVLGRLN--QL-F------KRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNYVEGRSEIPIPTYFIGDYGV   75 (604)
Q Consensus         6 ILv~GDvhG~~~--~l-~------~kv~~l~~k~GpfD~vi~~GDff~~~~~-~~~~~~~~l~g~~~~p~ptyfv~GNh~   75 (604)
                      ||.++|+|=...  .. .      +++..... ..++|+||++||++..... ....+.+++.......+|+++++||||
T Consensus         1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD   79 (144)
T cd07400           1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIK-ALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD   79 (144)
T ss_pred             CeEeCccCCCCCcchhHHHHHHHHHHHHHHHh-ccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence            688999994211  11 1      11222222 2358999999999876432 223345566543433369999999985


Q ss_pred             ChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCc
Q 007415           76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIV  155 (604)
Q Consensus        76 ~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~v  155 (604)
                                              .                                                       
T Consensus        80 ------------------------~-------------------------------------------------------   80 (144)
T cd07400          80 ------------------------V-------------------------------------------------------   80 (144)
T ss_pred             ------------------------E-------------------------------------------------------
Confidence                                    1                                                       


Q ss_pred             cEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       156 DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                       |+++|.+|.........         ...+...+.++++..++++++|||.|..+
T Consensus        81 -iv~~Hhp~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~l~GH~H~~~  126 (144)
T cd07400          81 -IVVLHHPLVPPPGSGRE---------RLLDAGDALKLLAEAGVDLVLHGHKHVPY  126 (144)
T ss_pred             -EEEecCCCCCCCccccc---------cCCCHHHHHHHHHHcCCCEEEECCCCCcC
Confidence             89999999887432111         12377889999999999999999988653

YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional

Probab=98.57  E-value=1e-06  Score=89.29  Aligned_cols=201  Identities=15%  Similarity=0.111  Sum_probs=102.6

Q ss_pred             CEEEEEcCCCCCHH------HHHHHHHHHHhhcCCCcEEEEecCCCCC----C--hhhHHHHHHHhcccCCCCCcEEEEc
Q 007415            4 PRILLCGDVLGRLN------QLFKRVQSVNKSAGPFDAVLCVGQFFPD----S--SELLDEFMNYVEGRSEIPIPTYFIG   71 (604)
Q Consensus         4 ~KILv~GDvhG~~~------~l~~kv~~l~~k~GpfD~vi~~GDff~~----~--~~~~~~~~~~l~g~~~~p~ptyfv~   71 (604)
                      |||++++|+|....      .+.+.+.   ......|+|+++||+|..    .  .....++.+.+......++|+|++.
T Consensus         1 M~i~~iSDlHl~~~~~~~~~~~~~~l~---~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~   77 (241)
T PRK05340          1 MPTLFISDLHLSPERPAITAAFLRFLR---GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMH   77 (241)
T ss_pred             CcEEEEeecCCCCCChhHHHHHHHHHH---hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            78999999995421      2223232   222357999999999842    1  1112334445444445668999999


Q ss_pred             CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC
Q 007415           72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE  151 (604)
Q Consensus        72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~  151 (604)
                      ||||...  -..+..              ..++..|....+++++|.+|....|-....       .+.....++++.. 
T Consensus        78 GNHD~~~--~~~~~~--------------~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~-------~d~~y~~~r~~~r-  133 (241)
T PRK05340         78 GNRDFLL--GKRFAK--------------AAGMTLLPDPSVIDLYGQRVLLLHGDTLCT-------DDKAYQRFRRKVR-  133 (241)
T ss_pred             CCCchhh--hHHHHH--------------hCCCEEeCCcEEEEECCEEEEEECCccccc-------CCHHHHHHHHHHh-
Confidence            9998421  111110              123455555556678999999888864311       1111112222210 


Q ss_pred             CCCccEEEeCCCCccccc----c----ccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcc
Q 007415          152 PGIVDLFLTNEWPSGVTN----K----AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVH  223 (604)
Q Consensus       152 ~~~vDILLTh~wP~gi~~----~----~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~  223 (604)
                       ++.=+.+-+..|.....    .    +..........-.......+.++++...+.+.++||.|.--. ..+..  ...
T Consensus       134 -~~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~-~~~~~--~~~  209 (241)
T PRK05340        134 -NPWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI-HQLQA--GGQ  209 (241)
T ss_pred             -CHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce-eeccC--CCc
Confidence             11111112223322100    0    000000000001234456788999999999999999875311 11111  111


Q ss_pred             eeEEEEcCCCCC
Q 007415          224 VTRFLGLAPVGN  235 (604)
Q Consensus       224 ~TRFI~L~~~gn  235 (604)
                      .-+.|+||.+..
T Consensus       210 ~~~~~~lgdw~~  221 (241)
T PRK05340        210 PATRIVLGDWHE  221 (241)
T ss_pred             ceEEEEeCCCCC
Confidence            236899999964

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain

Probab=98.52  E-value=3e-06  Score=82.01  Aligned_cols=134  Identities=15%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             EEEEEcCCC-CCHH-HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415            5 RILLCGDVL-GRLN-QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL   82 (604)
Q Consensus         5 KILv~GDvh-G~~~-~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~   82 (604)
                      .|+|++|.| |.-. .+-+.+.++.+. +.+|.||+|||+...      +..+++.   .+..|+++|.||||...    
T Consensus         1 ~i~viSDtHl~~~~~~~~~~~~~~~~~-~~~d~iih~GDi~~~------~~~~~l~---~~~~~~~~V~GN~D~~~----   66 (178)
T cd07394           1 LVLVIGDLHIPHRASDLPAKFKKLLVP-GKIQHVLCTGNLCSK------ETYDYLK---TIAPDVHIVRGDFDENL----   66 (178)
T ss_pred             CEEEEEecCCCCCchhhHHHHHHHhcc-CCCCEEEECCCCCCH------HHHHHHH---hhCCceEEEECCCCccc----
Confidence            389999999 5422 122233333333 458999999999752      1333432   22347899999997410    


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE  162 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~  162 (604)
                      .                       |....+++++|++|                                     ++||-
T Consensus        67 ~-----------------------lp~~~~~~~~g~~i-------------------------------------~l~HG   86 (178)
T cd07394          67 N-----------------------YPETKVITVGQFKI-------------------------------------GLIHG   86 (178)
T ss_pred             c-----------------------CCCcEEEEECCEEE-------------------------------------EEEEC
Confidence            0                       11112344555444                                     46776


Q ss_pred             CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      ++.+.                ......+..+++...+.+.++||.|..+.+       ....+++||+|.++.
T Consensus        87 ~~~~~----------------~~~~~~~~~~~~~~~~dvii~GHTH~p~~~-------~~~g~~viNPGSv~~  136 (178)
T cd07394          87 HQVVP----------------WGDPDSLAALQRQLDVDILISGHTHKFEAF-------EHEGKFFINPGSATG  136 (178)
T ss_pred             CcCCC----------------CCCHHHHHHHHHhcCCCEEEECCCCcceEE-------EECCEEEEECCCCCC
Confidence            55322                112345667777788899999999864322       123599999999984

Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl

>COG0622 Predicted phosphoesterase [General function prediction only]

Probab=98.52  E-value=3.3e-06  Score=81.04  Aligned_cols=141  Identities=17%  Similarity=0.119  Sum_probs=89.0

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL   82 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~   82 (604)
                      .|||||++|.|+.... ..+..++.... ++|+||.+||+-.+...      ..+.+.  +..++|+|-||+|.... . 
T Consensus         1 ~m~ilviSDtH~~~~~-~~~~~~~~~~~-~~d~vih~GD~~~~~~~------~~l~~~--~~~~i~~V~GN~D~~~~-~-   68 (172)
T COG0622           1 MMKILVISDTHGPLRA-IEKALKIFNLE-KVDAVIHAGDSTSPFTL------DALEGG--LAAKLIAVRGNCDGEVD-Q-   68 (172)
T ss_pred             CcEEEEEeccCCChhh-hhHHHHHhhhc-CCCEEEECCCcCCccch------HHhhcc--cccceEEEEccCCCccc-c-
Confidence            4899999999999863 34444444444 58999999999766321      122110  45789999999985310 0 


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE  162 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~  162 (604)
                                            .-+....+++++|+||+.+=|-                                    
T Consensus        69 ----------------------~~~p~~~~~~~~g~ki~l~HGh------------------------------------   90 (172)
T COG0622          69 ----------------------EELPEELVLEVGGVKIFLTHGH------------------------------------   90 (172)
T ss_pred             ----------------------ccCChhHeEEECCEEEEEECCC------------------------------------
Confidence                                  1122245778888888755442                                    


Q ss_pred             CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcc
Q 007415          163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE  237 (604)
Q Consensus       163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~  237 (604)
                       =..+                ...-..+..++++...-..++||.|....     .  ....+.+||+|....+.
T Consensus        91 -~~~~----------------~~~~~~l~~la~~~~~Dvli~GHTH~p~~-----~--~~~~i~~vNPGS~s~pr  141 (172)
T COG0622          91 -LYFV----------------KTDLSLLEYLAKELGADVLIFGHTHKPVA-----E--KVGGILLVNPGSVSGPR  141 (172)
T ss_pred             -cccc----------------ccCHHHHHHHHHhcCCCEEEECCCCcccE-----E--EECCEEEEcCCCcCCCC
Confidence             2211                01222455666666777888999886422     2  23358999999986543

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=98.50  E-value=1.2e-06  Score=91.07  Aligned_cols=215  Identities=16%  Similarity=0.122  Sum_probs=112.4

Q ss_pred             CCEEEEEcCCCC---CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCC-h---hhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415            3 PPRILLCGDVLG---RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS-S---ELLDEFMNYVEGRSEIPIPTYFIGDYGV   75 (604)
Q Consensus         3 ~~KILv~GDvhG---~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~-~---~~~~~~~~~l~g~~~~p~ptyfv~GNh~   75 (604)
                      +.+++|+||.+.   ....+++++   .+...++|+||.+||+.-.. .   ..-+.+.+.+... ...+|+++++||||
T Consensus         4 ~~~f~v~gD~~~~~~~~~~~~~~l---~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~~~~GNHD   79 (294)
T cd00839           4 PFKFAVFGDMGQNTNNSTNTLDHL---EKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL-ASYVPYMVTPGNHE   79 (294)
T ss_pred             cEEEEEEEECCCCCCCcHHHHHHH---HhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH-HhcCCcEEcCcccc
Confidence            468999999995   334444444   33233689999999995321 1   1112233333221 23589999999999


Q ss_pred             ChHHHHHHHhccccc-cCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcC--
Q 007415           76 GAAKVLLAASKNSAN-QGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEE--  151 (604)
Q Consensus        76 ~~~~~l~~l~~~~~~-~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~~--  151 (604)
                      ............... ............+.+|     .+.+++++|.+|.......   ......++++-|.+ |+..  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-----sf~~g~v~fi~Lds~~~~~---~~~~~~~q~~WL~~~L~~~~~  151 (294)
T cd00839          80 ADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWY-----SFDVGPVHFVSLSTEVDFY---GDGPGSPQYDWLEADLAKVDR  151 (294)
T ss_pred             cccCCCCcccccccccccccCCCCCCCCCceE-----EEeeCCEEEEEEecccccc---cCCCCcHHHHHHHHHHHHhcc
Confidence            632110000000000 0000000000011111     2346788999886543211   11233445544443 2211  


Q ss_pred             -CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccC---------CC
Q 007415          152 -PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV---------DA  221 (604)
Q Consensus       152 -~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~---------~~  221 (604)
                       ..+.-|+++|.|+.........    ..  ........+.+|+++.+....|+||.|.|--..|....         ..
T Consensus       152 ~~~~~~iv~~H~P~~~~~~~~~~----~~--~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~  225 (294)
T cd00839         152 SKTPWIIVMGHRPMYCSNTDHDD----CI--EGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSN  225 (294)
T ss_pred             cCCCeEEEEeccCcEecCccccc----cc--hhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccC
Confidence             1245689999998754321110    00  01245567888999999999999999876445564331         12


Q ss_pred             cceeEEEEcCCCCC
Q 007415          222 VHVTRFLGLAPVGN  235 (604)
Q Consensus       222 ~~~TRFI~L~~~gn  235 (604)
                      ...|.+|--|.-|.
T Consensus       226 ~~g~~yiv~G~~G~  239 (294)
T cd00839         226 PKGPVHIVIGAGGN  239 (294)
T ss_pred             CCccEEEEECCCcc
Confidence            34677777777775

Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain

Probab=98.48  E-value=8.6e-06  Score=83.38  Aligned_cols=185  Identities=10%  Similarity=-0.023  Sum_probs=98.7

Q ss_pred             CCEEEEEcCCCCCHH---------------HHHH-HHHHHHhhcCCCcEEEEecCCCCCChhh------HHHHHHHhccc
Q 007415            3 PPRILLCGDVLGRLN---------------QLFK-RVQSVNKSAGPFDAVLCVGQFFPDSSEL------LDEFMNYVEGR   60 (604)
Q Consensus         3 ~~KILv~GDvhG~~~---------------~l~~-kv~~l~~k~GpfD~vi~~GDff~~~~~~------~~~~~~~l~g~   60 (604)
                      +.++++++|+|-...               .+++ .++.+++.....|+||++||+.......      ...+.+.+.. 
T Consensus         4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~-   82 (262)
T cd07395           4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL-   82 (262)
T ss_pred             CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh-
Confidence            468999999998742               1122 2333333333589999999997653211      1233444432 


Q ss_pred             CCCCCcEEEEcCCCCCh----HHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCC
Q 007415           61 SEIPIPTYFIGDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGT  136 (604)
Q Consensus        61 ~~~p~ptyfv~GNh~~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~  136 (604)
                      ...++|+|+++||||..    ...+..+..            ...+.      .-.+..+|+++..|.............
T Consensus        83 ~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~------------~~g~~------~y~~~~~~~~~i~lds~~~~~~~~~~~  144 (262)
T cd07395          83 LDPDIPLVCVCGNHDVGNTPTEESIKDYRD------------VFGDD------YFSFWVGGVFFIVLNSQLFFDPSEVPE  144 (262)
T ss_pred             ccCCCcEEEeCCCCCCCCCCChhHHHHHHH------------HhCCc------ceEEEECCEEEEEeccccccCcccccc
Confidence            23478999999999852    111111110            00011      012346788888875542211111123


Q ss_pred             CCHHHHHHHHHh-hcC---CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415          137 YSQDDVDALRAL-AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF  210 (604)
Q Consensus       137 ~te~d~~~L~~l-~~~---~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f  210 (604)
                      ...++++-|.+. ...   ....-|+++|.||.........    ............+.+++++......||||.|..
T Consensus       145 ~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~----~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~  218 (262)
T cd07395         145 LAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEED----SYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRN  218 (262)
T ss_pred             chHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCc----ccCCcCHHHHHHHHHHHHhcCceEEEECccccC
Confidence            445556555542 211   2346799999999643211000    000000112346777888889999999998864

CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th

>KOG3947 consensus Phosphoesterases [General function prediction only]

Probab=98.45  E-value=1.8e-06  Score=86.63  Aligned_cols=203  Identities=17%  Similarity=0.190  Sum_probs=112.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCCc-EEEEcCCCCChHH--
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAK--   79 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~p-tyfv~GNh~~~~~--   79 (604)
                      .++.+++|.|+....+       + +.-+=|.+|.+|||-.- ..++...+.+++ |  ++|.- =+.|.|||++..+  
T Consensus        62 ~r~VcisdtH~~~~~i-------~-~~p~gDvlihagdfT~~g~~~ev~~fn~~~-g--slph~yKIVIaGNHELtFd~e  130 (305)
T KOG3947|consen   62 ARFVCISDTHELTFDI-------N-DIPDGDVLIHAGDFTNLGLPEEVIKFNEWL-G--SLPHEYKIVIAGNHELTFDHE  130 (305)
T ss_pred             eEEEEecCcccccCcc-------c-cCCCCceEEeccCCccccCHHHHHhhhHHh-c--cCcceeeEEEeeccceeeccc
Confidence            5789999999975433       2 22123999999999542 223333344444 2  22221 3578899997543  


Q ss_pred             HHHHHhc---cccc------cCcc-cCC-ceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-
Q 007415           80 VLLAASK---NSAN------QGFK-MDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-  147 (604)
Q Consensus        80 ~l~~l~~---~~~~------~~~~-~~g-~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-  147 (604)
                      +...+-+   +...      .+.+ .++ ..+--|.+||.... +++.|++|.+.  ....-...|..+..- -..+.. 
T Consensus       131 f~~~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~iYLqD~~-vtv~G~~Iygs--pw~p~~~g~~f~l~r-g~~~ld~  206 (305)
T KOG3947|consen  131 FMADLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNCIYLQDSE-VTVRGVRIYGS--PWTPLLPGWAFNLPR-GQSLLDK  206 (305)
T ss_pred             ccchhhccccceecCccccccCccccccccchhceeEEEecCc-EEEEEEEEecC--CCCcccCchhhhhhh-hHhhhHH
Confidence            1110100   0000      0000 111 23567889999766 57788877643  222111112222111 111111 


Q ss_pred             hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHH-HHHHHHHhCCCEEEEccCCCcccccccccCCCcceeE
Q 007415          148 LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDST-VSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTR  226 (604)
Q Consensus       148 l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~-i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TR  226 (604)
                      -.....++|||+||.+|.|..+....   -++   .+.|+.. +..+...+||+||+.||.|..|--.      +.+.|+
T Consensus       207 W~~ip~~iDvL~tHtPPlG~gd~~~~---~~g---qr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvt------a~G~t~  274 (305)
T KOG3947|consen  207 WNQIPGGIDVLITHTPPLGHGDLVPV---FSG---QRNGCVELLNTVERRVQPKYHVFGHVHEGHGVT------ADGYTT  274 (305)
T ss_pred             HhcCccccceeccCCCCCCcchhccc---ccC---cccCHHHHHHhHhhccccceEEeeeeecCceee------ecCccc
Confidence            11235789999999999997654220   122   4677765 4555556999999999976653322      567899


Q ss_pred             EEEcCCC
Q 007415          227 FLGLAPV  233 (604)
Q Consensus       227 FI~L~~~  233 (604)
                      |||-.-+
T Consensus       275 fina~~C  281 (305)
T KOG3947|consen  275 FINAELC  281 (305)
T ss_pred             cccHHHh
Confidence            9976554

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain

Probab=98.41  E-value=6.3e-06  Score=84.91  Aligned_cols=206  Identities=13%  Similarity=0.102  Sum_probs=109.3

Q ss_pred             CEEEEEcCCCCCH----HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCCcEEEEcC
Q 007415            4 PRILLCGDVLGRL----NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGD   72 (604)
Q Consensus         4 ~KILv~GDvhG~~----~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~G   72 (604)
                      ++++++||.-..-    ..+.+.+.++.++. +.|+||.+||++....       ...+.+.+.+.. ....+|+|.++|
T Consensus         1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~-~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~G   78 (277)
T cd07378           1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAEL-GPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLG   78 (277)
T ss_pred             CeEEEEeecCCCCCHHHHHHHHHHHHHHHhc-CCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecC
Confidence            4689999987741    34445555555544 5899999999853211       111234444432 225789999999


Q ss_pred             CCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEc------CcEEEEEecccCCC-C--------CCCCCC
Q 007415           73 YGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH------GLSVAYLSGRQSSE-G--------QQFGTY  137 (604)
Q Consensus        73 Nh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~------GlrIa~lgG~~~~~-~--------~~~~~~  137 (604)
                      |||.....-..+.-...    .....+..++.+|     .+...      +++|.+|--..... .        ......
T Consensus        79 NHD~~~~~~~~~~~~~~----~~~~~~~~~~~~y-----~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~  149 (277)
T cd07378          79 NHDYSGNVSAQIDYTKR----PNSPRWTMPAYYY-----RVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL  149 (277)
T ss_pred             CcccCCCchheeehhcc----CCCCCccCcchhe-----EEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence            99864221111000000    0000111122111     12233      57777775442211 1        011223


Q ss_pred             CHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccc
Q 007415          138 SQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY  216 (604)
Q Consensus       138 te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py  216 (604)
                      .+++++-|.+ |.......=|+++|.+|........          .......+.+++++.+..++|+||.|.+....  
T Consensus       150 ~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~~~----------~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~--  217 (277)
T cd07378         150 AEEQLAWLEKTLAASTADWKIVVGHHPIYSSGEHGP----------TSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK--  217 (277)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEeCccceeCCCCCC----------cHHHHHHHHHHHHHcCCCEEEeCCcccceeee--
Confidence            4455555554 2222334569999999875432111          01224567788888899999999988753321  


Q ss_pred             ccCCCcceeEEEEcCCCCC
Q 007415          217 SNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       217 ~~~~~~~~TRFI~L~~~gn  235 (604)
                       .  ....|++|..|.-+.
T Consensus       218 -~--~~~~~~~i~~G~~~~  233 (277)
T cd07378         218 -D--DGSGTSFVVSGAGSK  233 (277)
T ss_pred             -c--CCCCcEEEEeCCCcc
Confidence             1  124688888875543

Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase

Probab=98.36  E-value=1.2e-05  Score=81.12  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             EEEEcCCCCCH------HHHHHHHHHHHhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccCCCCCcEEEEcCC
Q 007415            6 ILLCGDVLGRL------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRSEIPIPTYFIGDY   73 (604)
Q Consensus         6 ILv~GDvhG~~------~~l~~kv~~l~~k~GpfD~vi~~GDff~~------~~~~~~~~~~~l~g~~~~p~ptyfv~GN   73 (604)
                      +++++|+|...      +.+++.+..+.   ...|+||++||+|..      .....+.+.+.+....+.++|+|+|.||
T Consensus         1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~---~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GN   77 (231)
T TIGR01854         1 TLFISDLHLSPERPDITALFLDFLREEA---RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGN   77 (231)
T ss_pred             CeEEEecCCCCCChhHHHHHHHHHHhhh---ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence            47899999542      23444443322   258999999999852      1111223444444434557899999999


Q ss_pred             CCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEeccc
Q 007415           74 GVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        74 h~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~  127 (604)
                      ||....  ..+..              ..++..+....+++++|.+|..+=|-.
T Consensus        78 HD~~~~--~~~~~--------------~~gi~~l~~~~~~~~~g~~ill~HGd~  115 (231)
T TIGR01854        78 RDFLIG--KRFAR--------------EAGMTLLPDPSVIDLYGQKVLLMHGDT  115 (231)
T ss_pred             Cchhhh--HHHHH--------------HCCCEEECCCEEEEECCEEEEEEcCcc
Confidence            984211  11110              125566666566778999998887763

This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain

Probab=98.36  E-value=1.5e-06  Score=85.98  Aligned_cols=175  Identities=16%  Similarity=0.181  Sum_probs=89.1

Q ss_pred             EEEEEcCCC-CCH----------H---HHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCCcE
Q 007415            5 RILLCGDVL-GRL----------N---QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPT   67 (604)
Q Consensus         5 KILv~GDvh-G~~----------~---~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~pt   67 (604)
                      ||+.++|+| |..          .   .+++++.....+. .+|+||++||+|....   .....+.+++.......+|+
T Consensus         1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   79 (223)
T cd00840           1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPV   79 (223)
T ss_pred             CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence            699999999 321          1   1233333332333 4899999999987532   22334555554322247899


Q ss_pred             EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcC---C-CCeE--E--EcCcEEEEEecccCCCCCCCCCCCH
Q 007415           68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLK---G-SGNF--T--LHGLSVAYLSGRQSSEGQQFGTYSQ  139 (604)
Q Consensus        68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---~-~gv~--~--~~GlrIa~lgG~~~~~~~~~~~~te  139 (604)
                      |++.||||..........            .....++..++   . ....  .  ..++.|.+++-....       ...
T Consensus        80 ~~~~GNHD~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-------~~~  140 (223)
T cd00840          80 FIIAGNHDSPSRLGALSP------------LLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-------RLR  140 (223)
T ss_pred             EEecCCCCCccccccccc------------hHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-------HHH
Confidence            999999996432111000            00112333331   0 1111  1  234555655432110       001


Q ss_pred             HHHHHHHH--hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          140 DDVDALRA--LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       140 ~d~~~L~~--l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                      +..+.+..  ........-||++|....+......            ...+.....+...+..|+++||.|...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~v~~GH~H~~~  202 (223)
T cd00840         141 DLLADAELRPRPLDPDDFNILLLHGGVAGAGPSDS------------ERAPFVPEALLPAGFDYVALGHIHRPQ  202 (223)
T ss_pred             HHHHHHHHHhhccCCCCcEEEEEeeeeecCCCCcc------------cccccCcHhhcCcCCCEEECCCcccCe
Confidence            11110111  1122456789999999887642110            112233344456788999999988763

Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi

>PHA03008 hypothetical protein; Provisional

Probab=98.34  E-value=1.7e-06  Score=82.22  Aligned_cols=90  Identities=18%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             CCEEEcCCCCeEEE----cCcEEEEEecccCCC--CCC--------CCCCCH--HHHHHHHHhhcCCCCccEEEeCCCCc
Q 007415          102 DNLFWLKGSGNFTL----HGLSVAYLSGRQSSE--GQQ--------FGTYSQ--DDVDALRALAEEPGIVDLFLTNEWPS  165 (604)
Q Consensus       102 ~Nl~~Lg~~gv~~~----~GlrIa~lgG~~~~~--~~~--------~~~~te--~d~~~L~~l~~~~~~vDILLTh~wP~  165 (604)
                      .|++||..+++ ++    .|++|-|-.-+  ..  ++.        .+.|..  ++...-.++  .. .+||||||.||.
T Consensus        99 gnIIYLeDs~V-tI~f~~rgIKIYGSP~s--P~~~F~~sai~k~~~~wAf~~~~d~~i~wwn~--IP-~tDILITHgPP~  172 (234)
T PHA03008         99 LDIIILRDDLI-EFDFFDDIIKIYGQSHI--EDKKFKNSHIHKALEGIAHIKKNDDEINYRNH--IP-KCDILITASPPF  172 (234)
T ss_pred             CCEEEEeCCcE-EEEecCCceEEECCCCC--cchhcccccccccccccccccCccccchhhcc--CC-CCCEEEeCCCCc
Confidence            58999997776 44    57777653222  22  111        123321  111111222  23 499999999999


Q ss_pred             cccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415          166 GVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF  210 (604)
Q Consensus       166 gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f  210 (604)
                      |+.|.             .+|++.+.+-+.++|||||++||.-.|
T Consensus       173 GhLD~-------------~vGC~~Ll~~I~rVKPKyHVFGh~~~~  204 (234)
T PHA03008        173 AILDD-------------DLACGDLFSKVIKIKPKFHIFNGLTQF  204 (234)
T ss_pred             ccccc-------------ccCcHHHHHHHHHhCCcEEEeCCcccc
Confidence            99652             479999998889999999999995433

>TIGR00583 mre11 DNA repair protein (mre11)

Probab=98.31  E-value=3.1e-06  Score=91.86  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCCCH-----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhH----HHHHHH--------
Q 007415            3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELL----DEFMNY--------   56 (604)
Q Consensus         3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~----~~~~~~--------   56 (604)
                      .||||+++|+|-..           ...|+.+-.+..+. .+|+||++||+|....   .+.    +.+.+|        
T Consensus         3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~   81 (405)
T TIGR00583         3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE   81 (405)
T ss_pred             ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence            48999999999431           22445544444444 5899999999987632   111    222221        


Q ss_pred             ---hc------------------ccCCCCCcEEEEcCCCCChH
Q 007415           57 ---VE------------------GRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus        57 ---l~------------------g~~~~p~ptyfv~GNh~~~~   78 (604)
                         |+                  ....+.+|+|.|.||||++.
T Consensus        82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~  124 (405)
T TIGR00583        82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS  124 (405)
T ss_pred             hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence               11                  11136899999999999875

All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=98.30  E-value=3.2e-05  Score=79.24  Aligned_cols=161  Identities=11%  Similarity=0.029  Sum_probs=86.5

Q ss_pred             CCcEEEEecCCCCCChh-hHHHH----HHHhcccCCC--CCcEEEEcCCCCChH------HHHHHHhccccccCcccCCc
Q 007415           32 PFDAVLCVGQFFPDSSE-LLDEF----MNYVEGRSEI--PIPTYFIGDYGVGAA------KVLLAASKNSANQGFKMDGF   98 (604)
Q Consensus        32 pfD~vi~~GDff~~~~~-~~~~~----~~~l~g~~~~--p~ptyfv~GNh~~~~------~~l~~l~~~~~~~~~~~~g~   98 (604)
                      +.|+||++||++..+.. ..++|    ..+..-....  .+|+|.|+||||...      ..+..+.             
T Consensus        45 ~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~-------------  111 (257)
T cd08163          45 KPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFE-------------  111 (257)
T ss_pred             CCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHH-------------
Confidence            58999999999875432 11222    2222221222  379999999999521      0111111             


Q ss_pred             eecCCEEEcCC-CCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHh-hc-CCCCccEEEeCCCCccccccccc--
Q 007415           99 KVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-AE-EPGIVDLFLTNEWPSGVTNKAAA--  173 (604)
Q Consensus        99 ei~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l-~~-~~~~vDILLTh~wP~gi~~~~~~--  173 (604)
                            .++|. ..++.++|.+|.+|-+....... ......+..+-|... .. .....=|||||.|.....+....  
T Consensus       112 ------~~Fg~~~~~~~~~~~~fV~Lds~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~  184 (257)
T cd08163         112 ------KYFGPTSRVIDVGNHTFVILDTISLSNKD-DPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPL  184 (257)
T ss_pred             ------HHhCCCceEEEECCEEEEEEccccccCCc-ccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCc
Confidence                  01222 13456778888888776332111 122323333333332 21 12344599999997755431110  


Q ss_pred             --cc--ccc--CcCCC-CCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 007415          174 --SD--MLV--GISDS-SNTDSTVSELVAEIKPRYHIAGSKGVFYA  212 (604)
Q Consensus       174 --~~--~~~--~~~~~-~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyE  212 (604)
                        ..  .+.  +.... ....+.-.+|++++||+..|+||.|.|.+
T Consensus       185 re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~  230 (257)
T cd08163         185 RESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCE  230 (257)
T ss_pred             cccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccce
Confidence              00  111  11111 23445666999999999999999888877

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site

>PRK11340 phosphodiesterase YaeI; Provisional

Probab=98.30  E-value=1.7e-05  Score=81.84  Aligned_cols=71  Identities=17%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             CCEEEEEcCCCCC----HHHHHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            3 PPRILLCGDVLGR----LNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         3 ~~KILv~GDvhG~----~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .+||++++|+|..    ...+-+.++.+++ . ++|+|+++||++.. .....+.+.+.+..... +.|+|+|.||||-
T Consensus        49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~-~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~-~~pv~~V~GNHD~  124 (271)
T PRK11340         49 PFKILFLADLHYSRFVPLSLISDAIALGIE-Q-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAE-CAPTFACFGNHDR  124 (271)
T ss_pred             CcEEEEEcccCCCCcCCHHHHHHHHHHHHh-c-CCCEEEEccCcCCCCccccHHHHHHHHHHHhh-cCCEEEecCCCCc
Confidence            4899999999976    3223333333332 2 57999999999752 11112334445543332 4799999999995

>PHA02239 putative protein phosphatase

Probab=98.22  E-value=2.8e-06  Score=85.85  Aligned_cols=78  Identities=10%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      |||+++||+||+++.+.+.++.+....++.|.||++||+..-.+...+.+..++. ....+.+++++.||||.  .+++-
T Consensus         1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~-~~~~~~~~~~l~GNHE~--~~l~~   77 (235)
T PHA02239          1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD-LMSNDDNVVTLLGNHDD--EFYNI   77 (235)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH-HhhcCCCeEEEECCcHH--HHHHH
Confidence            6899999999999988777777765444579999999996643332222333322 12335689999999983  45554


Q ss_pred             H
Q 007415           84 A   84 (604)
Q Consensus        84 l   84 (604)
                      +
T Consensus        78 ~   78 (235)
T PHA02239         78 M   78 (235)
T ss_pred             H
Confidence            4

>PHA02546 47 endonuclease subunit; Provisional

Probab=98.18  E-value=2.7e-05  Score=83.10  Aligned_cols=139  Identities=13%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             CEEEEEcCCC-CC----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh----hhHHHHHH-HhcccCCCCCcE
Q 007415            4 PRILLCGDVL-GR----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMN-YVEGRSEIPIPT   67 (604)
Q Consensus         4 ~KILv~GDvh-G~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~----~~~~~~~~-~l~g~~~~p~pt   67 (604)
                      ||||.++|+| |.          +..+++++-.+..++ .+|+||++||+|....    .....+.+ ++....+.++|+
T Consensus         1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v   79 (340)
T PHA02546          1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITL   79 (340)
T ss_pred             CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence            7999999999 31          334555554444455 4899999999986521    11112222 222234568999


Q ss_pred             EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH
Q 007415           68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA  147 (604)
Q Consensus        68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~  147 (604)
                      |+|.||||....  ........     ..-....+|++..+....++++|++|..+.           +...++...+..
T Consensus        80 ~~I~GNHD~~~~--~~~~~~~~-----~~ll~~~~~v~v~~~~~~v~i~g~~i~~lP-----------~~~~~~~~~~~~  141 (340)
T PHA02546         80 HVLVGNHDMYYK--NTIRPNAP-----TELLGQYDNITVIDEPTTVDFDGCSIDLIP-----------WICKENTEEILE  141 (340)
T ss_pred             EEEccCCCcccc--cccccCch-----HHHHhhCCCEEEeCCceEEEECCEEEEECC-----------CCCHHHHHHHHH
Confidence            999999985210  00000000     000011357766665455566776665431           223344443332


Q ss_pred             hhcCCCCccEEEeCC
Q 007415          148 LAEEPGIVDLFLTNE  162 (604)
Q Consensus       148 l~~~~~~vDILLTh~  162 (604)
                      ..+ .....|||.|.
T Consensus       142 ~l~-~~~~~ill~H~  155 (340)
T PHA02546        142 FIK-NSKSEYCVGHW  155 (340)
T ss_pred             Hhc-cCCCcEEEEee
Confidence            211 24568999995

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed

Probab=98.12  E-value=5e-06  Score=85.87  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |+|+|+|||||+++.+.+.+.++.-.. ..|.++++||+..-++... ++.+++.   +.+.++++|.||||.
T Consensus         1 M~~~vIGDIHG~~~~l~~ll~~~~~~~-~~D~li~lGDlVdrGp~s~-~vl~~l~---~l~~~~~~VlGNHD~   68 (275)
T PRK00166          1 MATYAIGDIQGCYDELQRLLEKIDFDP-AKDTLWLVGDLVNRGPDSL-EVLRFVK---SLGDSAVTVLGNHDL   68 (275)
T ss_pred             CcEEEEEccCCCHHHHHHHHHhcCCCC-CCCEEEEeCCccCCCcCHH-HHHHHHH---hcCCCeEEEecChhH
Confidence            579999999999998877676653222 4699999999976543322 3445553   334578999999984

>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]

Probab=98.12  E-value=5.2e-06  Score=74.60  Aligned_cols=102  Identities=14%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CCCCcccCCCCC-C-CcceEEEECCEEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 007415          388 SKECWFCLSSPS-V-ESHLIVSVGEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGK  464 (604)
Q Consensus       388 ~~~C~FC~~~~~-~-~~~lIvs~g~~~yl-~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~  464 (604)
                      .+.|.||.+... . .+.+. -..++.|+ +=++.|-..-|-|+||++|+.+..+|..+...=++++.+.=+..+.....
T Consensus        30 ~~~C~FCDia~r~~~~~ell-~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~  108 (166)
T KOG4359|consen   30 KSTCVFCDIAGRQDPGTELL-HCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF  108 (166)
T ss_pred             CCceEEEEeecccCCCCcee-EecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc
Confidence            458999998742 2 33433 34555555 55689999999999999999999999766443333333322233332111


Q ss_pred             ceEEEe-eccCC------CCeeEEEEEecCcchH
Q 007415          465 EAVFFE-WLSKR------GTHANLQAVPIPTSKA  491 (604)
Q Consensus       465 ~~v~~E-~~~~~------~~H~HihvvPvp~~~~  491 (604)
                       +.+-| +++..      +.|+|+|+|--|.+++
T Consensus       109 -td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMg  141 (166)
T KOG4359|consen  109 -TDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMG  141 (166)
T ss_pred             -CCchheeEeccCCCcceeeeeeEeeecchHHhc
Confidence             22222 22322      4699999996556554

>PLN02533 probable purple acid phosphatase

Probab=98.11  E-value=0.00011  Score=80.66  Aligned_cols=208  Identities=14%  Similarity=0.133  Sum_probs=108.7

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh--HHHHHHHhcccCCCCCcEEEEcCCCCChHH-
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL--LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-   79 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~--~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-   79 (604)
                      +.+++++||.+-. ...-+.++.+++ . .+|+||++||+.-.+...  -+.+.+++... ...+|.+.++||||.... 
T Consensus       139 ~~~f~v~GDlG~~-~~~~~tl~~i~~-~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l-~s~~P~m~~~GNHE~~~~~  214 (427)
T PLN02533        139 PIKFAVSGDLGTS-EWTKSTLEHVSK-W-DYDVFILPGDLSYANFYQPLWDTFGRLVQPL-ASQRPWMVTHGNHELEKIP  214 (427)
T ss_pred             CeEEEEEEeCCCC-cccHHHHHHHHh-c-CCCEEEEcCccccccchHHHHHHHHHHhhhH-hhcCceEEeCccccccccc
Confidence            4689999998532 111123344433 2 589999999996442211  12233444322 235899999999995310 


Q ss_pred             -----HHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhc---
Q 007415           80 -----VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAE---  150 (604)
Q Consensus        80 -----~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~---  150 (604)
                           ....+. ..+.--+...+  ...|.+|     .+.++|..|..|+.....      ....++.+-|++ |++   
T Consensus       215 ~~~~~~f~~y~-~rf~mP~~~~g--~~~~~yY-----Sfd~g~vhfI~Lds~~~~------~~~~~Q~~WLe~dL~~~~r  280 (427)
T PLN02533        215 ILHPEKFTAYN-ARWRMPFEESG--STSNLYY-----SFNVYGVHIIMLGSYTDF------EPGSEQYQWLENNLKKIDR  280 (427)
T ss_pred             cccCcCccchh-hcccCCccccC--CCCCceE-----EEEECCEEEEEEeCCccc------cCchHHHHHHHHHHHhhcc
Confidence                 000000 00000000000  0122322     245678899888764221      112333333332 221   


Q ss_pred             CCCCccEEEeCCCCccccccccccccccCcCCCCCC-cHHHHHHHHHhCCCEEEEccCCCcccc-cccccCC-CcceeEE
Q 007415          151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNT-DSTVSELVAEIKPRYHIAGSKGVFYAR-EPYSNVD-AVHVTRF  227 (604)
Q Consensus       151 ~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~G-s~~i~~l~~~lkPrYhf~Gh~~~fyEr-~Py~~~~-~~~~TRF  227 (604)
                      ...+.-|++.|.||.........    ..   ...+ -..+..|+.+.++.+.|+||.|. ||| .|-.+.. ....|..
T Consensus       281 ~~~pwiIv~~H~P~y~s~~~~~~----~~---~~~~~r~~le~Ll~~~~VdlvlsGH~H~-YeR~~p~~~~~~~~~gpvy  352 (427)
T PLN02533        281 KTTPWVVAVVHAPWYNSNEAHQG----EK---ESVGMKESMETLLYKARVDLVFAGHVHA-YERFDRVYQGKTDKCGPVY  352 (427)
T ss_pred             cCCCEEEEEeCCCeeecccccCC----cc---hhHHHHHHHHHHHHHhCCcEEEecceec-ccccccccCCccCCCCCEE
Confidence            12356789999999865321000    00   0112 24688899999999999999985 565 3433221 2345778


Q ss_pred             EEcCCCCCc
Q 007415          228 LGLAPVGNK  236 (604)
Q Consensus       228 I~L~~~gn~  236 (604)
                      |-.|.-|+.
T Consensus       353 iv~G~gG~~  361 (427)
T PLN02533        353 ITIGDGGNR  361 (427)
T ss_pred             EEeCCCccc
Confidence            878887774

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain

Probab=98.11  E-value=2.9e-05  Score=76.22  Aligned_cols=72  Identities=14%  Similarity=0.018  Sum_probs=47.9

Q ss_pred             CCEEEEEcCCCCCHH-----------HHHHHHHHHHhhcCCCcEEEEecCCCCCChh---hHHHHHHHhcccCCCCCcEE
Q 007415            3 PPRILLCGDVLGRLN-----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE---LLDEFMNYVEGRSEIPIPTY   68 (604)
Q Consensus         3 ~~KILv~GDvhG~~~-----------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~---~~~~~~~~l~g~~~~p~pty   68 (604)
                      .+|||+++|+|-...           ...+.+.++.++. .+|+||++||++.....   ....+.+++.......+|+|
T Consensus         2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~   80 (199)
T cd07383           2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA   80 (199)
T ss_pred             ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence            579999999996322           2344455444444 58999999999654221   23345555544344579999


Q ss_pred             EEcCCCC
Q 007415           69 FIGDYGV   75 (604)
Q Consensus        69 fv~GNh~   75 (604)
                      +++||||
T Consensus        81 ~~~GNHD   87 (199)
T cd07383          81 ATFGNHD   87 (199)
T ss_pred             EECccCC
Confidence            9999997

DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain

Probab=98.09  E-value=3.3e-05  Score=76.90  Aligned_cols=149  Identities=11%  Similarity=0.047  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCCHH-------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415            5 RILLCGDVLGRLN-------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIPTYFIGDYGV   75 (604)
Q Consensus         5 KILv~GDvhG~~~-------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~ptyfv~GNh~   75 (604)
                      +|++++|+|-..+       ...+.+.+...+. ++|+||++||+.....  ..-..+.+.+....+.++|+++++||||
T Consensus         2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD   80 (214)
T cd07399           2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD   80 (214)
T ss_pred             EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence            7999999995222       3333333333233 5899999999976533  2223334444333335799999999997


Q ss_pred             ChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCCCC
Q 007415           76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGI  154 (604)
Q Consensus        76 ~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~~~~~  154 (604)
                      .-      +                     +|. ..                         .++++++-|.+ |+.....
T Consensus        81 ~~------~---------------------~ld-~~-------------------------~~~~ql~WL~~~L~~~~~~  107 (214)
T cd07399          81 LV------L---------------------ALE-FG-------------------------PRDEVLQWANEVLKKHPDR  107 (214)
T ss_pred             ch------h---------------------hCC-CC-------------------------CCHHHHHHHHHHHHHCCCC
Confidence            20      0                     011 00                         01333443333 2222222


Q ss_pred             ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCc
Q 007415          155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVF  210 (604)
Q Consensus       155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~f  210 (604)
                      -=|+++|.+|..-....+.. ...  .....+...+.+|+++. +.+..|+||.|..
T Consensus       108 ~~iv~~H~p~~~~~~~~~~~-~~~--~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~  161 (214)
T cd07399         108 PAILTTHAYLNCDDSRPDSI-DYD--SDVNDGQQIWDKLVKKNDNVFMVLSGHVHGA  161 (214)
T ss_pred             CEEEEecccccCCCCcCccc-ccc--cccccHHHHHHHHHhCCCCEEEEEccccCCC
Confidence            34899999987432111100 000  00124566788888887 6889999998765

YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain

Probab=98.09  E-value=0.0002  Score=73.28  Aligned_cols=189  Identities=13%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             EEEEcCCCCCHH---HH--H-H-HHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhc---ccCCC-CCcE
Q 007415            6 ILLCGDVLGRLN---QL--F-K-RVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVE---GRSEI-PIPT   67 (604)
Q Consensus         6 ILv~GDvhG~~~---~l--~-~-kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~---g~~~~-p~pt   67 (604)
                      |+.++|+|-...   ..  . + .++.+++ . +.|+||++||+.....       ....++.+|++   ..... +.|+
T Consensus         2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~-~-~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   79 (256)
T cd07401           2 FVHISDIHVSSFHPPNRAQDETFCSNFIDV-I-KPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKW   79 (256)
T ss_pred             EEEecccccCCcCchhhhhHHHHHHHHHHh-h-CCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceE
Confidence            678899996321   11  1 1 1223322 2 5799999999864311       11222323332   22222 5899


Q ss_pred             EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCC--eEE--EcCcEEEEEecccCCCCC----CCCCCCH
Q 007415           68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG--NFT--LHGLSVAYLSGRQSSEGQ----QFGTYSQ  139 (604)
Q Consensus        68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~g--v~~--~~GlrIa~lgG~~~~~~~----~~~~~te  139 (604)
                      |.++||||.. .... ... ... .+..   .+..   .+....  .++  .++++|.+|......+..    ....+++
T Consensus        80 ~~v~GNHD~~-~~~~-~~~-~~~-~~~~---y~~~---~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~  149 (256)
T cd07401          80 FDIRGNHDLF-NIPS-LDS-ENN-YYRK---YSAT---GRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDK  149 (256)
T ss_pred             EEeCCCCCcC-CCCC-ccc-hhh-HHHH---hhee---cCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCH
Confidence            9999999852 1000 000 000 0000   0000   011111  112  368899988876532111    1245678


Q ss_pred             HHHHHHHH-hhcC-CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccc-ccc
Q 007415          140 DDVDALRA-LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAR-EPY  216 (604)
Q Consensus       140 ~d~~~L~~-l~~~-~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr-~Py  216 (604)
                      ++++.|.+ +... ..+.-|+++|.|+.......           ...+.. +.+++++.++.+.||||.|.. ++ .|.
T Consensus       150 ~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~~-----------~~~~~~-~~~ll~~~~v~~vl~GH~H~~-~~~~p~  216 (256)
T cd07401         150 KLLDRLEKELEKSTNSNYTIWFGHYPTSTIISPS-----------AKSSSK-FKDLLKKYNVTAYLCGHLHPL-GGLEPV  216 (256)
T ss_pred             HHHHHHHHHHHhcccCCeEEEEEcccchhccCCC-----------cchhHH-HHHHHHhcCCcEEEeCCccCC-Ccceee
Confidence            88887765 3222 23567999999985432110           112223 888899999999999998864 55 777


Q ss_pred             ccC
Q 007415          217 SNV  219 (604)
Q Consensus       217 ~~~  219 (604)
                      -+.
T Consensus       217 h~~  219 (256)
T cd07401         217 HYA  219 (256)
T ss_pred             eec
Confidence            664

TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>PRK04036 DNA polymerase II small subunit; Validated

Probab=98.03  E-value=6.8e-05  Score=84.05  Aligned_cols=117  Identities=16%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCC-CCH---HHHHHHH-HHHHhh-------cCCCcEEEEecCCCCCCh---------------hhHHHHHH
Q 007415            3 PPRILLCGDVL-GRL---NQLFKRV-QSVNKS-------AGPFDAVLCVGQFFPDSS---------------ELLDEFMN   55 (604)
Q Consensus         3 ~~KILv~GDvh-G~~---~~l~~kv-~~l~~k-------~GpfD~vi~~GDff~~~~---------------~~~~~~~~   55 (604)
                      .++|++++|+| |.-   ...+.++ ..++..       ....|.||++||++....               .....+.+
T Consensus       243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~  322 (504)
T PRK04036        243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE  322 (504)
T ss_pred             ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence            46899999999 542   1122222 222311       224799999999975310               01123555


Q ss_pred             HhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCC-ceec-CCEEEcCCCCeEEEcCcEEEEEeccc
Q 007415           56 YVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDG-FKVT-DNLFWLKGSGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        56 ~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g-~ei~-~Nl~~Lg~~gv~~~~GlrIa~lgG~~  127 (604)
                      +|... ...+|+++++||||....   .++..    .+...- ..+. .|+.+|..-..++++|.+|.+..|..
T Consensus       323 ~L~~L-~~~i~V~~ipGNHD~~~~---~lPQ~----~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~  388 (504)
T PRK04036        323 YLKQI-PEDIKIIISPGNHDAVRQ---AEPQP----AFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRS  388 (504)
T ss_pred             HHHhh-hcCCeEEEecCCCcchhh---ccCCC----CccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCC
Confidence            66432 235899999999984211   01100    000000 0011 47888887556788999999999975

>TIGR00619 sbcd exonuclease SbcD

Probab=97.92  E-value=2.6e-05  Score=79.69  Aligned_cols=74  Identities=23%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             CEEEEEcCCCC-C----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCC-CcEE
Q 007415            4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIP-IPTY   68 (604)
Q Consensus         4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p-~pty   68 (604)
                      ||||.++|+|- .          ....++++..+..+. .+|+||++||+|....   .+...+.+++....... +|+|
T Consensus         1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~   79 (253)
T TIGR00619         1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIV   79 (253)
T ss_pred             CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence            79999999993 2          122344444443344 4899999999987532   22223445554434444 9999


Q ss_pred             EEcCCCCChH
Q 007415           69 FIGDYGVGAA   78 (604)
Q Consensus        69 fv~GNh~~~~   78 (604)
                      +|.||||...
T Consensus        80 ~i~GNHD~~~   89 (253)
T TIGR00619        80 VISGNHDSAQ   89 (253)
T ss_pred             EEccCCCChh
Confidence            9999999753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain

Probab=97.90  E-value=0.0011  Score=68.58  Aligned_cols=205  Identities=12%  Similarity=0.044  Sum_probs=109.8

Q ss_pred             CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEE-ecCCCCCChh--hH--------HHHHHH
Q 007415            4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSE--LL--------DEFMNY   56 (604)
Q Consensus         4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~--~~--------~~~~~~   56 (604)
                      .+||.++|+||.+.                .+...++.+.+++  .|+|++ +||++.....  ..        ....+.
T Consensus         1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~   78 (277)
T cd07410           1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAEN--PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAA   78 (277)
T ss_pred             CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcC--CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHH
Confidence            47999999999873                3444455554443  477776 9999764321  00        112223


Q ss_pred             hcccCCCCCcEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEEcC-------CCCeEEEc-CcEEEEEec
Q 007415           57 VEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSG  125 (604)
Q Consensus        57 l~g~~~~p~ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~-GlrIa~lgG  125 (604)
                      +   ..+.. .+++.||||...  +.+ +.+..        .+...++.|+.+..       ..-|++++ |+||+.+|-
T Consensus        79 l---n~~g~-d~~~lGNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~  146 (277)
T cd07410          79 M---NALGY-DAGTLGNHEFNYGLDYLDKVIKQ--------ANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGL  146 (277)
T ss_pred             H---HhcCC-CEEeecccCcccCHHHHHHHHHh--------CCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEec
Confidence            3   34444 477789999652  222 22221        22356788888764       12355789 999999997


Q ss_pred             ccCCCCC-----C--CCCCCHHHHHHHH----HhhcCCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHH
Q 007415          126 RQSSEGQ-----Q--FGTYSQDDVDALR----ALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSE  192 (604)
Q Consensus       126 ~~~~~~~-----~--~~~~te~d~~~L~----~l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~  192 (604)
                      .......     .  ...+++. ++++.    .+..  .++|  |+|+|.--..-..       +     .........+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~-------~-----~~~~~~~~~~  211 (277)
T cd07410         147 TTPQIPNWEKPNLIGGLKFTDP-VETAKKYVPKLRA--EGADVVVVLAHGGFERDLE-------E-----SLTGENAAYE  211 (277)
T ss_pred             CCcccccccCcccCCCcEEcCH-HHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc-------c-----ccCCccHHHH
Confidence            6432110     0  0122211 12222    2211  3466  4677763322100       0     0122233456


Q ss_pred             HHHH-hCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccC
Q 007415          193 LVAE-IKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT  248 (604)
Q Consensus       193 l~~~-lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~  248 (604)
                      |+++ -..-..|+||.|..+..+      ....|.++.-|..|.     ++--++|+
T Consensus       212 la~~~~~vD~IlgGHsH~~~~~~------~~~~~~v~q~g~~g~-----~vg~l~l~  257 (277)
T cd07410         212 LAEEVPGIDAILTGHQHRRFPGP------TVNGVPVVQPGNWGS-----HLGVIDLT  257 (277)
T ss_pred             HHhcCCCCcEEEeCCCccccccC------CcCCEEEEcCChhhC-----EEEEEEEE
Confidence            6665 356678899988764321      234578887777664     56555554

CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain

Probab=97.86  E-value=3.1e-05  Score=76.64  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .||+|+||+||++..+.+.++.+... ...|.+|++||+..-.+.. .+..+++..     .++++|.||||.
T Consensus         1 ~ri~~isDiHg~~~~l~~~l~~~~~~-~~~d~~~~~GD~v~~g~~~-~~~~~~l~~-----~~~~~v~GNhe~   66 (207)
T cd07424           1 GRDFVVGDIHGHYSLLQKALDAVGFD-PARDRLISVGDLIDRGPES-LACLELLLE-----PWFHAVRGNHEQ   66 (207)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHcCCC-CCCCEEEEeCCcccCCCCH-HHHHHHHhc-----CCEEEeECCChH
Confidence            37999999999998776666655322 2479999999996643322 234455532     368999999984

PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain

Probab=97.85  E-value=2.5e-05  Score=78.90  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=51.3

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhh-------cC-CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKS-------AG-PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGV   75 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k-------~G-pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~   75 (604)
                      |||.|+||+||+++.|-+.++++.-.       .+ +.|.+|++||+..-+.. ..+..+++.... ..-.+++|-||||
T Consensus         1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~-s~evl~~l~~l~-~~~~~~~v~GNHE   78 (234)
T cd07423           1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD-SPEVLRLVMSMV-AAGAALCVPGNHD   78 (234)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC-HHHHHHHHHHHh-hCCcEEEEECCcH
Confidence            68999999999999888877776321       11 36899999999765433 223445543211 1235889999998


Q ss_pred             ChHHHHHHH
Q 007415           76 GAAKVLLAA   84 (604)
Q Consensus        76 ~~~~~l~~l   84 (604)
                      .  .++..+
T Consensus        79 ~--~l~~~~   85 (234)
T cd07423          79 N--KLYRKL   85 (234)
T ss_pred             H--HHHHHh
Confidence            4  344433

PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp

>PRK10966 exonuclease subunit SbcD; Provisional

Probab=97.73  E-value=8.4e-05  Score=81.12  Aligned_cols=75  Identities=15%  Similarity=0.152  Sum_probs=47.6

Q ss_pred             CEEEEEcCCCC-C----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCCcEEE
Q 007415            4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPTYF   69 (604)
Q Consensus         4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~ptyf   69 (604)
                      ||||.++|+|- .          ...+++++..+..+. .+|+||++||+|....   .+...+.+++......++|+|+
T Consensus         1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~   79 (407)
T PRK10966          1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVV   79 (407)
T ss_pred             CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence            79999999993 2          112233443333334 4899999999986421   1112234444443456789999


Q ss_pred             EcCCCCChHH
Q 007415           70 IGDYGVGAAK   79 (604)
Q Consensus        70 v~GNh~~~~~   79 (604)
                      |.||||....
T Consensus        80 I~GNHD~~~~   89 (407)
T PRK10966         80 LAGNHDSVAT   89 (407)
T ss_pred             EcCCCCChhh
Confidence            9999997543

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional

Probab=97.73  E-value=4.8e-05  Score=76.02  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      .||+|+||+||+++.|.+.++.+..+. ..|.+|++||+..-++. ..+..+++..     ..+++|.||||.  .+++.
T Consensus        17 ~ri~vigDIHG~~~~L~~lL~~i~~~~-~~D~li~lGDlvDrGp~-s~~vl~~l~~-----~~~~~v~GNHE~--~~l~~   87 (218)
T PRK11439         17 RHIWLVGDIHGCFEQLMRKLRHCRFDP-WRDLLISVGDLIDRGPQ-SLRCLQLLEE-----HWVRAVRGNHEQ--MALDA   87 (218)
T ss_pred             CeEEEEEcccCCHHHHHHHHHhcCCCc-ccCEEEEcCcccCCCcC-HHHHHHHHHc-----CCceEeeCchHH--HHHHH
Confidence            489999999999999988888774332 36999999999764433 2335566532     236799999983  44554


Q ss_pred             H
Q 007415           84 A   84 (604)
Q Consensus        84 l   84 (604)
                      +
T Consensus        88 ~   88 (218)
T PRK11439         88 L   88 (218)
T ss_pred             H
Confidence            4

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)

Probab=97.69  E-value=6.5e-05  Score=77.29  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |.++|+|||||+++++...++++.-.. .-|.++++||+..-++... +..+++.   ..+-.+++|.||||.
T Consensus         1 m~~YvIGDIHGc~daL~~LL~~i~f~~-~~D~l~~lGDlVdRGP~sl-evL~~l~---~l~~~~~~VlGNHD~   68 (279)
T TIGR00668         1 MATYLIGDLHGCYDELQALLERVEFDP-GQDTLWLTGDLVARGPGSL-EVLRYVK---SLGDAVRLVLGNHDL   68 (279)
T ss_pred             CcEEEEEcccCCHHHHHHHHHHhCcCC-CCCEEEEeCCccCCCCCHH-HHHHHHH---hcCCCeEEEEChhHH
Confidence            459999999999998888887764222 3699999999976544322 2445553   233346799999984

Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]

Probab=97.67  E-value=0.00011  Score=79.83  Aligned_cols=74  Identities=22%  Similarity=0.296  Sum_probs=50.8

Q ss_pred             CEEEEEcCCCCC---------HHHH---HHHHHHHHhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCCcEE
Q 007415            4 PRILLCGDVLGR---------LNQL---FKRVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPTY   68 (604)
Q Consensus         4 ~KILv~GDvhG~---------~~~l---~~kv~~l~~k~GpfD~vi~~GDff~~~---~~~~~~~~~~l~g~~~~p~pty   68 (604)
                      ||||.++|+|=.         ++..   |..+-.+.++. ..|+||++||+|...   ..+...+.+.+.......+|+|
T Consensus         1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~   79 (390)
T COG0420           1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVV   79 (390)
T ss_pred             CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEE
Confidence            799999999954         2222   22222222333 479999999999752   3445556666655566889999


Q ss_pred             EEcCCCCChH
Q 007415           69 FIGDYGVGAA   78 (604)
Q Consensus        69 fv~GNh~~~~   78 (604)
                      .|.||||.+.
T Consensus        80 ~I~GNHD~~~   89 (390)
T COG0420          80 VIAGNHDSPS   89 (390)
T ss_pred             EecCCCCchh
Confidence            9999999764

>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional

Probab=97.60  E-value=9.7e-05  Score=75.18  Aligned_cols=77  Identities=12%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhc-------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSA-------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      ||+.|+||+||.++.+.+.++++.-..       ..-|.+|++||+..-++... +..+++.... ..-.++++-||||.
T Consensus         1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~-~vl~~~~~~~-~~~~~~~l~GNHE~   78 (245)
T PRK13625          1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL-RMIEIVWELV-EKKAAYYVPGNHCN   78 (245)
T ss_pred             CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH-HHHHHHHHHh-hCCCEEEEeCccHH
Confidence            689999999999998887777654321       12379999999976433322 2344432221 23368999999973


Q ss_pred             hHHHHHHH
Q 007415           77 AAKVLLAA   84 (604)
Q Consensus        77 ~~~~l~~l   84 (604)
                        .++..+
T Consensus        79 --~~l~~~   84 (245)
T PRK13625         79 --KLYRFF   84 (245)
T ss_pred             --HHHHHH
Confidence              445544

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain

Probab=97.58  E-value=0.0002  Score=74.06  Aligned_cols=71  Identities=14%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcC----CCcEEEEecCCCCCChhhHHHHHHHhcccC-CCC-CcEEEEcCCCCC
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAG----PFDAVLCVGQFFPDSSELLDEFMNYVEGRS-EIP-IPTYFIGDYGVG   76 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~G----pfD~vi~~GDff~~~~~~~~~~~~~l~g~~-~~p-~ptyfv~GNh~~   76 (604)
                      +|+++||+||+++.|-..++.+....+    ..+.+|++||+..-.++. .++.++|.... .-+ ..++|+.||||.
T Consensus         3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS-~eVld~L~~l~~~~~~~~vv~LrGNHE~   79 (304)
T cd07421           3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET-RKVIDFLISLPEKHPKQRHVFLCGNHDF   79 (304)
T ss_pred             eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH-HHHHHHHHHhhhcccccceEEEecCChH
Confidence            699999999999988877777765421    357899999996543322 23444443322 121 257899999984

Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain

Probab=97.56  E-value=0.00013  Score=74.62  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      ++|+||+||+++.+-+.++++.... ..|.++++||+..-++... +..+++.   +..-.+++|.||||.
T Consensus         1 ~yvIGDIHG~~~~L~~LL~~i~~~~-~~D~Li~lGDlVdRGp~s~-evl~~l~---~l~~~v~~VlGNHD~   66 (257)
T cd07422           1 TYAIGDIQGCYDELQRLLEKINFDP-AKDRLWLVGDLVNRGPDSL-ETLRFVK---SLGDSAKTVLGNHDL   66 (257)
T ss_pred             CEEEECCCCCHHHHHHHHHhcCCCC-CCCEEEEecCcCCCCcCHH-HHHHHHH---hcCCCeEEEcCCchH
Confidence            5899999999998877777664322 3699999999976544333 3445553   233468899999985

ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional

Probab=97.53  E-value=0.00016  Score=72.37  Aligned_cols=71  Identities=18%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHH
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA   84 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l   84 (604)
                      ||+|+||+||+++.+.+.++.+.-+. ..|.+||+||+..-++... +..+++.   +  -.+++|.||||.  .++..+
T Consensus        16 ri~visDiHg~~~~l~~~l~~~~~~~-~~d~l~~lGD~vdrG~~~~-~~l~~l~---~--~~~~~v~GNHE~--~~~~~~   86 (218)
T PRK09968         16 HIWVVGDIHGEYQLLQSRLHQLSFCP-ETDLLISVGDNIDRGPESL-NVLRLLN---Q--PWFISVKGNHEA--MALDAF   86 (218)
T ss_pred             eEEEEEeccCCHHHHHHHHHhcCCCC-CCCEEEECCCCcCCCcCHH-HHHHHHh---h--CCcEEEECchHH--HHHHHH
Confidence            89999999999998877666653222 4799999999976433322 3445553   1  246899999984  344433

>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain

Probab=97.51  E-value=0.0047  Score=64.41  Aligned_cols=219  Identities=16%  Similarity=0.137  Sum_probs=113.3

Q ss_pred             CEEEEEcCCCCCHHH--------------HHHHHHHHHhhcCCCcEEEEecCCCCCChh--hH---HHHHHHhcccCCCC
Q 007415            4 PRILLCGDVLGRLNQ--------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSE--LL---DEFMNYVEGRSEIP   64 (604)
Q Consensus         4 ~KILv~GDvhG~~~~--------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~--~~---~~~~~~l~g~~~~p   64 (604)
                      ++||.++|+||++..              +...++.+.+++ +-.++|-+||+|.....  ..   ....+.+   ..++
T Consensus         1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~---n~~g   76 (288)
T cd07412           1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQN-PNSLFVSAGDLIGASPFESALLQDEPTIEAL---NAMG   76 (288)
T ss_pred             CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcC-CCeEEEeCCcccccccchhhcccCCcHHHHH---HhhC
Confidence            479999999998543              444455544443 45699999998753211  00   0122333   3444


Q ss_pred             CcEEEEcCCCCCh---HHHHHHHhcccc-------ccCcc-cCCceecCCEEEcC-------CCCeEEEcCcEEEEEecc
Q 007415           65 IPTYFIGDYGVGA---AKVLLAASKNSA-------NQGFK-MDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        65 ~ptyfv~GNh~~~---~~~l~~l~~~~~-------~~~~~-~~g~ei~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~  126 (604)
                      +. +++.||||-.   ..+.+.+.....       -+.|. ..-..++.|+.+-.       ..-+++++|+||+.+|=.
T Consensus        77 ~D-a~t~GNHefd~G~~~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~  155 (288)
T cd07412          77 VD-ASAVGNHEFDEGYAELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAV  155 (288)
T ss_pred             Ce-eeeecccccccCHHHHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEeec
Confidence            44 4777999954   223333321000       00000 11246788887643       234457899999999976


Q ss_pred             cCCCCC-------CCCCCCHHHHHHHHH----hhcCCCCccE--EEeCCCCccccccccccccccCcCCCCCCcHHHHHH
Q 007415          127 QSSEGQ-------QFGTYSQDDVDALRA----LAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL  193 (604)
Q Consensus       127 ~~~~~~-------~~~~~te~d~~~L~~----l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l  193 (604)
                      ......       ....|+. .++++++    +.+  .++|+  +|+|.--..-..  .     ..  . ........++
T Consensus       156 ~~~~~~~~~~~~~~g~~f~d-~~e~~~~~v~~lr~--~~~D~IIvL~H~G~~~~~~--~-----~~--~-~~~~~~~~~l  222 (288)
T cd07412         156 TKDTPNLVSPDGVAGLEFTD-EVEAINAVAPELKA--GGVDAIVVLAHEGGSTKGG--D-----DT--C-SAASGPIADI  222 (288)
T ss_pred             CCCccceeccccccCceEcC-HHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCCC--C-----cc--c-cccChhHHHH
Confidence            432110       0112221 1222322    221  35665  668844321110  0     00  0 0111234566


Q ss_pred             HHHhC--CCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415          194 VAEIK--PRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP  249 (604)
Q Consensus       194 ~~~lk--PrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p  249 (604)
                      +.++.  .-..+.||.|..+.. |..   ....|.++.-|..|+     ++--..|..
T Consensus       223 ~~~~~~~iD~IlgGHsH~~~~~-~~~---~~~~~~v~q~g~~g~-----~vg~i~l~~  271 (288)
T cd07412         223 VNRLDPDVDVVFAGHTHQAYNC-TVP---AGNPRLVTQAGSYGK-----AVADVDLTI  271 (288)
T ss_pred             HhhcCCCCCEEEeCccCccccc-ccc---CcCCEEEEecChhhc-----eeEEEEEEE
Confidence            66654  478899999877652 211   234688888888775     666666553

YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]

Probab=97.47  E-value=0.0027  Score=65.23  Aligned_cols=73  Identities=16%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCCC--H---HHHHHH-HHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGR--L---NQLFKR-VQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~--~---~~l~~k-v~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |||+.++|+|-.  .   ..++.. ++.++  ..++|+||+.||+-.... .+-..+.++|. ....+.|+++++||||.
T Consensus         1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~--~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~   77 (301)
T COG1409           1 MRIAHISDLHLGALGVDSEELLEALLAAIE--QLKPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDA   77 (301)
T ss_pred             CeEEEEecCcccccccchHHHHHHHHHHHh--cCCCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcC
Confidence            689999999976  1   222222 23332  235799999999955422 22233556664 34678999999999996


Q ss_pred             hHH
Q 007415           77 AAK   79 (604)
Q Consensus        77 ~~~   79 (604)
                      ...
T Consensus        78 ~~~   80 (301)
T COG1409          78 RVV   80 (301)
T ss_pred             Cch
Confidence            533

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain

Probab=97.47  E-value=0.00022  Score=71.45  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHhhc------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            7 LLCGDVLGRLNQLFKRVQSVNKSA------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         7 Lv~GDvhG~~~~l~~kv~~l~~k~------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .|+|||||+++.|.+.++++....      .+.|.+|++||+..-++. ..+..+++..... +-.+++|-||||.
T Consensus         2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~-S~~vl~~l~~l~~-~~~~~~l~GNHE~   75 (222)
T cd07413           2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPE-IRELLEIVKSMVD-AGHALAVMGNHEF   75 (222)
T ss_pred             EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCC-HHHHHHHHHHhhc-CCCEEEEEccCcH
Confidence            589999999998888887774431      146899999999654332 2234444433222 2368999999984

PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=97.46  E-value=0.00022  Score=71.01  Aligned_cols=67  Identities=15%  Similarity=0.350  Sum_probs=45.3

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      +|+||+||+++.+...++.+..  .+.|.+|++||++....... +..+++......+.+++++.||||.
T Consensus         1 ~~igDiHg~~~~l~~~l~~~~~--~~~d~li~lGD~vdrg~~~~-~~l~~l~~~~~~~~~~~~l~GNHe~   67 (225)
T cd00144           1 YVIGDIHGCLDDLLRLLEKIGF--PPNDKLIFLGDYVDRGPDSV-EVIDLLLALKILPDNVILLRGNHED   67 (225)
T ss_pred             CEEeCCCCCHHHHHHHHHHhCC--CCCCEEEEECCEeCCCCCcH-HHHHHHHHhcCCCCcEEEEccCchh
Confidence            4899999999887766665543  24699999999976433322 2333332212126789999999985

The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain

Probab=97.45  E-value=0.00023  Score=70.61  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=46.3

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHhh------cCCCcEEEEecCCCCCChhhHHHHHHHhcc----cCCCCCcEEEEcCCCCC
Q 007415            7 LLCGDVLGRLNQLFKRVQSVNKS------AGPFDAVLCVGQFFPDSSELLDEFMNYVEG----RSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         7 Lv~GDvhG~~~~l~~kv~~l~~k------~GpfD~vi~~GDff~~~~~~~~~~~~~l~g----~~~~p~ptyfv~GNh~~   76 (604)
                      +|+||+||+++.+.+.++.+.--      ..+.|.++++||++.-.+... ++.+++..    ..+.+.+++++.||||.
T Consensus         1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~-~vl~~l~~l~~~~~~~~~~v~~l~GNHE~   79 (208)
T cd07425           1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVI-EILWLLYKLEQEAAKAGGKVHFLLGNHEL   79 (208)
T ss_pred             CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHH-HHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence            48999999999887777654310      135799999999976543322 23333322    12346789999999984

This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain

Probab=97.36  E-value=0.0035  Score=63.61  Aligned_cols=112  Identities=11%  Similarity=0.033  Sum_probs=67.1

Q ss_pred             CEEEEEcCCCCCH---------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCCcEEEE
Q 007415            4 PRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFI   70 (604)
Q Consensus         4 ~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv   70 (604)
                      ++||.++|+||.+         ..+...++++++.+ +-.+++..||++......    -..+.+.+   ..++ ..+++
T Consensus         1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~-~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l---~~~g-~d~~~   75 (252)
T cd00845           1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAEN-ENTLLLDAGDNFDGSPPSTATKGEANIELM---NALG-YDAVT   75 (252)
T ss_pred             CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcC-CCeEEEeCCccCCCccchhccCCcHHHHHH---HhcC-CCEEe
Confidence            4899999999876         45555566655543 434889999997642211    01123333   2333 46788


Q ss_pred             cCCCCChH--H-HHHHHhccccccCcccCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccC
Q 007415           71 GDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQS  128 (604)
Q Consensus        71 ~GNh~~~~--~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~  128 (604)
                      .|||+...  + +.+.+..        .+...++.|+.+-+         ...+++++|++|+.+|-...
T Consensus        76 ~GNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~  137 (252)
T cd00845          76 IGNHEFDYGLDALAELYKD--------ANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTP  137 (252)
T ss_pred             eccccccccHHHHHHHHHh--------CCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccc
Confidence            89999642  1 2233321        12345677876543         12356789999999997644

This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain

Probab=97.29  E-value=0.0026  Score=62.24  Aligned_cols=35  Identities=9%  Similarity=0.187  Sum_probs=28.9

Q ss_pred             EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 007415          157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV  209 (604)
Q Consensus       157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~  209 (604)
                      |+|||.++...                  +.+.+.+++.+++|...|+||.|.
T Consensus       112 i~lsH~P~~~~------------------~~~~~~~~~~~~~p~~Ifs~H~H~  146 (195)
T cd08166         112 IMLSHVPLLAE------------------GGQALKHVVTDLDPDLIFSAHRHK  146 (195)
T ss_pred             eeeeccccccc------------------ccHHHHHHHHhcCceEEEEcCccc
Confidence            99999987642                  333788999999999999999765

A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain

Probab=97.28  E-value=0.0014  Score=66.58  Aligned_cols=108  Identities=15%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             EEEcCCC--CCH--HHHHHHHHH-HHhhcC---CCcEEEEecCCCCCCh---------------hhHHHHHHHhcccCCC
Q 007415            7 LLCGDVL--GRL--NQLFKRVQS-VNKSAG---PFDAVLCVGQFFPDSS---------------ELLDEFMNYVEGRSEI   63 (604)
Q Consensus         7 Lv~GDvh--G~~--~~l~~kv~~-l~~k~G---pfD~vi~~GDff~~~~---------------~~~~~~~~~l~g~~~~   63 (604)
                      ++++|+|  +..  ...++.+.+ ++....   .+|+||++||++....               .....+.+++.... .
T Consensus         2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~   80 (243)
T cd07386           2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP-S   80 (243)
T ss_pred             EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc-c
Confidence            6889999  321  122222222 222111   4799999999986410               11233555654332 3


Q ss_pred             CCcEEEEcCCCCChHHHH------HHHhccccccCcccCCcee-cCCEEEcCCCCeEEEcCcEEEEEeccc
Q 007415           64 PIPTYFIGDYGVGAAKVL------LAASKNSANQGFKMDGFKV-TDNLFWLKGSGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        64 p~ptyfv~GNh~~~~~~l------~~l~~~~~~~~~~~~g~ei-~~Nl~~Lg~~gv~~~~GlrIa~lgG~~  127 (604)
                      .+|+|+++||||-....+      ..+.            ..+ ..|+.++.....++++|.+|.+..|..
T Consensus        81 ~~~v~~ipGNHD~~~~~~pq~~l~~~l~------------~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~  139 (243)
T cd07386          81 HIKIIIIPGNHDAVRQAEPQPALPEEIR------------KLFLPGNVEFVSNPALVKIHGVDVLIYHGRS  139 (243)
T ss_pred             CCeEEEeCCCCCcccccCCCCCccHHHH------------hhcCCCceEEeCCCCEEEECCEEEEEECCCC
Confidence            589999999998521110      1110            001 257777766556788999999888864

The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera

>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain

Probab=97.26  E-value=0.022  Score=58.58  Aligned_cols=199  Identities=13%  Similarity=0.073  Sum_probs=102.1

Q ss_pred             CEEEEEcCCCCCHHH----------------------HHHHHHHHHhhcCCCcEEE-EecCCCCCChhh-H---HHHHHH
Q 007415            4 PRILLCGDVLGRLNQ----------------------LFKRVQSVNKSAGPFDAVL-CVGQFFPDSSEL-L---DEFMNY   56 (604)
Q Consensus         4 ~KILv~GDvhG~~~~----------------------l~~kv~~l~~k~GpfD~vi-~~GDff~~~~~~-~---~~~~~~   56 (604)
                      ..||.++|+||.+..                      +...++++.+.. ..|+|+ -+||++...... .   ..+.+.
T Consensus         1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~-~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~   79 (264)
T cd07411           1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAER-NPNTLLLDGGDTWQGSGEALYTRGQAMVDA   79 (264)
T ss_pred             CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhc-CCCeEEEeCCCccCCChHHhhcCChhHHHH
Confidence            369999999997543                      223333333331 357775 599998653211 0   112233


Q ss_pred             hcccCCCCCcEEEEcCCCCChH--H-HHHHHhccccccCcccCCceecCCEEEcCC-------CCeEEEcCcEEEEEecc
Q 007415           57 VEGRSEIPIPTYFIGDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        57 l~g~~~~p~ptyfv~GNh~~~~--~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~~~GlrIa~lgG~  126 (604)
                      +   ..  +..+++.||||-..  . +...+..        .+-..++.|+.+-..       .-+++.+|+||+.+|=+
T Consensus        80 l---~~--~g~da~~GNHefd~g~~~l~~~~~~--------~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~  146 (264)
T cd07411          80 L---NA--LGVDAMVGHWEFTYGPERVRELFGR--------LNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQT  146 (264)
T ss_pred             H---Hh--hCCeEEecccccccCHHHHHHHHhh--------CCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEec
Confidence            3   33  34444449999652  2 2222221        123467888876431       23446799999999987


Q ss_pred             cCCCCCC-------CCCCCH--HHHHHH-HHhhcCCCCccE--EEeCCCCccccccccccccccCcCCCCCCcHHHHHHH
Q 007415          127 QSSEGQQ-------FGTYSQ--DDVDAL-RALAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV  194 (604)
Q Consensus       127 ~~~~~~~-------~~~~te--~d~~~L-~~l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~  194 (604)
                      .......       ...++.  +.+.++ ..+. ...++|+  +|+|.....                       -.+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~iI~l~H~g~~~-----------------------~~~la  202 (264)
T cd07411         147 FPYVPIANPPRFTPGLTFGIREEELQEVVVKLR-REEGVDVVVLLSHNGLPV-----------------------DVELA  202 (264)
T ss_pred             cCCcccccCcCCCCCcEECCHHHHHHHHHHHHH-HhCCCCEEEEEecCCchh-----------------------hHHHH
Confidence            5421110       012221  222222 2221 1234564  666653210                       01233


Q ss_pred             HHh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415          195 AEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP  249 (604)
Q Consensus       195 ~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p  249 (604)
                      +++ ..-..+.||.|..+. .|+.   ....|.++.-|..+.     ++--++|+.
T Consensus       203 ~~~~~iDlilgGH~H~~~~-~~~~---~~~~t~v~~~g~~~~-----~vg~i~l~~  249 (264)
T cd07411         203 ERVPGIDVILSGHTHERTP-KPII---AGGGTLVVEAGSHGK-----FLGRLDLDV  249 (264)
T ss_pred             hcCCCCcEEEeCccccccc-Cccc---ccCCEEEEEcCcccc-----EEEEEEEEE
Confidence            332 234688999886543 2321   233578888877664     777777664

SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy

>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain

Probab=97.21  E-value=0.0051  Score=62.98  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCCCHH----------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCCcEEE
Q 007415            4 PRILLCGDVLGRLN----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYF   69 (604)
Q Consensus         4 ~KILv~GDvhG~~~----------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyf   69 (604)
                      ++||.++|+||.+.          .+-..++++.++  +-+++|-+||++......    ...+.+.+   ..+++.. +
T Consensus         1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~--~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l---n~~g~d~-~   74 (257)
T cd07408           1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL--DNDLLVDAGDAIQGLPISDLDKGETIIKIM---NAVGYDA-V   74 (257)
T ss_pred             CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhc--CCEEEEeCCCcCCCchhhhhcCCcHHHHHH---HhcCCcE-E
Confidence            47999999999753          344444444433  568999999997652210    01122333   3344444 6


Q ss_pred             EcCCCCChH--HHHH-HHhccccccCcccCCceecCCEEEcC-------CCCeEEEc-CcEEEEEeccc
Q 007415           70 IGDYGVGAA--KVLL-AASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSGRQ  127 (604)
Q Consensus        70 v~GNh~~~~--~~l~-~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~-GlrIa~lgG~~  127 (604)
                      +.||||...  +.+. .+..        .+...++.|+....       ..-+++.+ |+||+.+|-..
T Consensus        75 ~~GNHefd~G~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~  135 (257)
T cd07408          75 TPGNHEFDYGLDRLKELSKE--------ADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTT  135 (257)
T ss_pred             ccccccccCCHHHHHHHHhh--------CCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecC
Confidence            779999642  2222 2221        22346888887653       12344677 99999999764

SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet

>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain

Probab=97.12  E-value=0.041  Score=56.37  Aligned_cols=112  Identities=15%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCC----------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhcccCCCCCcEEE
Q 007415            4 PRILLCGDVLG----------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVEGRSEIPIPTYF   69 (604)
Q Consensus         4 ~KILv~GDvhG----------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~g~~~~p~ptyf   69 (604)
                      .+||.+.|+|+          .+..+...++++.+.+ |-.++|.+||++.....    .-..+.+.+   ..++. .++
T Consensus         1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~-~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l---~~l~~-d~~   75 (257)
T cd07406           1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKEN-PNTLVLFSGDVLSPSLLSTATKGKQMVPVL---NALGV-DLA   75 (257)
T ss_pred             CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcC-CCEEEEECCCccCCccchhhcCCccHHHHH---HhcCC-cEE
Confidence            36899999993          3566666666665543 43499999999764211    001123333   23333 477


Q ss_pred             EcCCCCChH--HHHHH-HhccccccCcccCCceecCCEEEcCC---------CCeEEEcCcEEEEEecccC
Q 007415           70 IGDYGVGAA--KVLLA-ASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQS  128 (604)
Q Consensus        70 v~GNh~~~~--~~l~~-l~~~~~~~~~~~~g~ei~~Nl~~Lg~---------~gv~~~~GlrIa~lgG~~~  128 (604)
                      +.||||...  +.+.. +..        .+...++.|+.+-..         ..+++.+|+||+.+|=..+
T Consensus        76 ~~GNHefd~g~~~l~~~~~~--------~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~  138 (257)
T cd07406          76 CFGNHEFDFGEDQLQKRLGE--------SKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEE  138 (257)
T ss_pred             eecccccccCHHHHHHHHhh--------CCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecc
Confidence            899999642  22322 321        223567888876442         2455679999999997654

CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th

>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

Probab=97.07  E-value=0.015  Score=71.77  Aligned_cols=204  Identities=15%  Similarity=0.091  Sum_probs=104.4

Q ss_pred             CCEEEEEcCCCCCH---HHHHHHHHHHHhhcCCCcEEEE-ecCCCCCChhh----HHHHHHHhcccCCCCCcEEEEcCCC
Q 007415            3 PPRILLCGDVLGRL---NQLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFIGDYG   74 (604)
Q Consensus         3 ~~KILv~GDvhG~~---~~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv~GNh   74 (604)
                      .++||.++|+||.+   ..+...++++.+++  .|+|++ +||+|......    -....+.+   ..+++ -+++.|||
T Consensus       660 ~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l---n~lg~-d~~~~GNH  733 (1163)
T PRK09419        660 ELTILHTNDFHGHLDGAAKRVTKIKEVKEEN--PNTILVDAGDVYQGSLYSNLLKGLPVLKMM---KEMGY-DASTFGNH  733 (1163)
T ss_pred             EEEEEEEeecccCCCCHHHHHHHHHHHHhhC--CCeEEEecCCCCCCcchhhhcCChHHHHHH---hCcCC-CEEEeccc
Confidence            37899999999874   45555555554443  477766 99987653210    01122333   23333 36699999


Q ss_pred             CCh---HHHHHHHhccc---cccCcc-cCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccCC-CCC-----
Q 007415           75 VGA---AKVLLAASKNS---ANQGFK-MDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSS-EGQ-----  132 (604)
Q Consensus        75 ~~~---~~~l~~l~~~~---~~~~~~-~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~~-~~~-----  132 (604)
                      |..   ..+...+....   ....|. .+-..++.|+++-.         ..-|++++|+||+.+|=.... ...     
T Consensus       734 Efd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~  813 (1163)
T PRK09419        734 EFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGN  813 (1163)
T ss_pred             ccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCC
Confidence            943   22333333110   000000 01246888887532         234456799999999976431 110     


Q ss_pred             -CCCCCCHHHHHHHHHh---hcCCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEc
Q 007415          133 -QFGTYSQDDVDALRAL---AEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAG  205 (604)
Q Consensus       133 -~~~~~te~d~~~L~~l---~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~G  205 (604)
                       ....|++. ++++.+.   .+...++|  |+|||.--..     +.          ..+.-.+.+|++++ .--..+.|
T Consensus       814 ~~~l~f~d~-~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~-----d~----------~~~~~~~~~lA~~v~gIDvIigG  877 (1163)
T PRK09419        814 VKNLEFKDP-AEAAKKWVKELKEKEKVDAIIALTHLGSNQ-----DR----------TTGEITGLELAKKVKGVDAIISA  877 (1163)
T ss_pred             cCCcEEcCH-HHHHHHHHHHHHhhcCCCEEEEEecCCccc-----cc----------cccccHHHHHHHhCCCCCEEEeC
Confidence             01233322 2222221   11124566  5888874321     10          01112345666655 34578899


Q ss_pred             cCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          206 SKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       206 h~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      |.|..+...       ...|-.+.-|.+|.
T Consensus       878 HsH~~~~~~-------v~~~~ivqag~~g~  900 (1163)
T PRK09419        878 HTHTLVDKV-------VNGTPVVQAYKYGR  900 (1163)
T ss_pred             CCCcccccc-------CCCEEEEeCChhHc
Confidence            988765421       12355666555553

>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain

Probab=97.05  E-value=0.039  Score=57.31  Aligned_cols=111  Identities=13%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCCCH---------------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhc
Q 007415            4 PRILLCGDVLGRL---------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVE   58 (604)
Q Consensus         4 ~KILv~GDvhG~~---------------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~   58 (604)
                      ++||.++|+||++                     ..+...++++.++. +--+++-+||++.....    .-....+.+ 
T Consensus         1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l-   78 (281)
T cd07409           1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAEN-PNVLFLNAGDAFQGTLWYTLYKGNADAEFM-   78 (281)
T ss_pred             CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCcchhhhcCChHHHHHH-
Confidence            4799999999875                     44445555554443 33355669998754211    001122333 


Q ss_pred             ccCCCCCcEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEEcCC----------CCeEEEcCcEEEEEec
Q 007415           59 GRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLHGLSVAYLSG  125 (604)
Q Consensus        59 g~~~~p~ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~----------~gv~~~~GlrIa~lgG  125 (604)
                        ..+++.. ++.||||...  +.+ +.+..        .....++.|+..-..          ..+++.+|+||+.+|=
T Consensus        79 --n~~g~D~-~~lGNHefd~G~~~l~~~~~~--------~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~  147 (281)
T cd07409          79 --NLLGYDA-MTLGNHEFDDGVEGLAPFLNN--------LKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGY  147 (281)
T ss_pred             --HhcCCCE-EEeccccccCCHHHHHHHHHh--------CCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEE
Confidence              3455654 4558999652  122 22221        123457778765331          2455789999999996


Q ss_pred             cc
Q 007415          126 RQ  127 (604)
Q Consensus       126 ~~  127 (604)
                      ..
T Consensus       148 ~~  149 (281)
T cd07409         148 TT  149 (281)
T ss_pred             ec
Confidence            64

CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si

>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN

Probab=97.02  E-value=0.0093  Score=67.82  Aligned_cols=110  Identities=15%  Similarity=0.053  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCCCHHH---------------------HHHHHHHHHhhcCCCcEEEEecCCCCCChhh---H-HHHHHHhc
Q 007415            4 PRILLCGDVLGRLNQ---------------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL---L-DEFMNYVE   58 (604)
Q Consensus         4 ~KILv~GDvhG~~~~---------------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~---~-~~~~~~l~   58 (604)
                      +.||.+.|+||++..                     +...++++.+++ +--++|-+||+|......   . ....+.++
T Consensus         1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~-~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N   79 (550)
T TIGR01530         1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAES-KNALVLHAGDAIIGTLYFTLFGGRADAALMN   79 (550)
T ss_pred             CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhC-CCeEEEECCCCCCCccchhhcCCHHHHHHHh
Confidence            369999999998643                     223344443333 557899999987652210   0 00122321


Q ss_pred             ccCCCCCcEEEEcCCCCChH--HHHHH-HhccccccCcccCCceecCCEEEc---------CCCCeEEEcCcEEEEEecc
Q 007415           59 GRSEIPIPTYFIGDYGVGAA--KVLLA-ASKNSANQGFKMDGFKVTDNLFWL---------KGSGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        59 g~~~~p~ptyfv~GNh~~~~--~~l~~-l~~~~~~~~~~~~g~ei~~Nl~~L---------g~~gv~~~~GlrIa~lgG~  126 (604)
                         .+++ -+.+.||||-..  +.+.. +..        ..-.+++.|+.+-         ...-|++++|++|+.+|=.
T Consensus        80 ---~~g~-Da~~lGNHEFd~G~~~l~~~~~~--------~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~  147 (550)
T TIGR01530        80 ---AAGF-DFFTLGNHEFDAGNEGLKEFLEP--------LEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLD  147 (550)
T ss_pred             ---ccCC-CEEEeccccccCCHHHHHHHHHh--------CCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEee
Confidence               2222 378899999652  22332 221        1234688888643         2234556899999999975

This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.

>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain

Probab=96.94  E-value=0.056  Score=56.30  Aligned_cols=114  Identities=18%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             CEEEEEcCCCCCHHH----------HHHHHHHHHhh---cCCCcEEEEecCCCCCChhh-H---HHHHHHhcccCCCCCc
Q 007415            4 PRILLCGDVLGRLNQ----------LFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL-L---DEFMNYVEGRSEIPIP   66 (604)
Q Consensus         4 ~KILv~GDvhG~~~~----------l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~~-~---~~~~~~l~g~~~~p~p   66 (604)
                      +.||.++|+||++..          +-..++.+.++   .++--++|-+||++...... .   .-..+.+   ..+++-
T Consensus         1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~---n~~g~D   77 (285)
T cd07405           1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGM---NLVGYD   77 (285)
T ss_pred             CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHH---HhhCCc
Confidence            469999999998533          23333333322   25567899999987532110 0   0011222   234444


Q ss_pred             EEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC------CCCeEEEcCcEEEEEecccC
Q 007415           67 TYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTLHGLSVAYLSGRQS  128 (604)
Q Consensus        67 tyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~~~GlrIa~lgG~~~  128 (604)
                      .. +.||||...  +.+..+...       ..-..++.|+++-.      ..-+++++|+|||.+|=...
T Consensus        78 a~-~~GNHEfD~G~~~L~~~~~~-------~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~  139 (285)
T cd07405          78 AM-AVGNHEFDNPLEVLRQQMKW-------ANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTD  139 (285)
T ss_pred             EE-eecccccccCHHHHHHHHhh-------CCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEeccc
Confidence            44 559999652  233322111       12246888987642      12344679999999987643

UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs

>PTZ00422 glideosome-associated protein 50; Provisional

Probab=96.91  E-value=0.049  Score=58.91  Aligned_cols=213  Identities=11%  Similarity=0.041  Sum_probs=107.0

Q ss_pred             CCEEEEEcCCCCCHH---HHHHHHHHHHhhcCCCcEEEEecCCCCCC------hhhHHHHHHHhcccC-CCCCcEEEEcC
Q 007415            3 PPRILLCGDVLGRLN---QLFKRVQSVNKSAGPFDAVLCVGQFFPDS------SELLDEFMNYVEGRS-EIPIPTYFIGD   72 (604)
Q Consensus         3 ~~KILv~GDvhG~~~---~l~~kv~~l~~k~GpfD~vi~~GDff~~~------~~~~~~~~~~l~g~~-~~p~ptyfv~G   72 (604)
                      +++++++||.-+.-.   .+-+.+.++.++. ++|+||-+||-|..+      +.-...|++.++... .+.+|-|.|.|
T Consensus        26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~-~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG  104 (394)
T PTZ00422         26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNE-RVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG  104 (394)
T ss_pred             eEEEEEEecCCCCchhHHHHHHHHHHHHHhC-CCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence            468999999654221   2223344444444 699999999977321      112223555554432 26789999999


Q ss_pred             CCCChHHHHHHHhcccc-------------ccCcccCCceecCCEEEcCCCCeEE--------E--cCc--EEEEEeccc
Q 007415           73 YGVGAAKVLLAASKNSA-------------NQGFKMDGFKVTDNLFWLKGSGNFT--------L--HGL--SVAYLSGRQ  127 (604)
Q Consensus        73 Nh~~~~~~l~~l~~~~~-------------~~~~~~~g~ei~~Nl~~Lg~~gv~~--------~--~Gl--rIa~lgG~~  127 (604)
                      |||-.-+...++.....             ...-.....|.+||-+|--......        .  .+.  .+.++--..
T Consensus       105 NHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~  184 (394)
T PTZ00422        105 QADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWI  184 (394)
T ss_pred             cccccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECch
Confidence            99843223333310000             0000012467788866532100000        0  111  222221110


Q ss_pred             CCCCCCCCCCCHHHHHHHHH-h--hcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEE
Q 007415          128 SSEGQQFGTYSQDDVDALRA-L--AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIA  204 (604)
Q Consensus       128 ~~~~~~~~~~te~d~~~L~~-l--~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~  204 (604)
                      ..........++.+.+-|.+ |  +.....-=|++-|-|-.......+.          ..-...+..|+++.+-.+.|+
T Consensus       185 l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~----------~~L~~~L~PLL~ky~VdlYis  254 (394)
T PTZ00422        185 LSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGD----------SYLSYYLLPLLKDAQVDLYIS  254 (394)
T ss_pred             hcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCC----------HHHHHHHHHHHHHcCcCEEEE
Confidence            00000001123444443332 2  2112334578889888876432110          112236778999999999999


Q ss_pred             ccCCCcccccccccCCCcceeEEEEcCCC
Q 007415          205 GSKGVFYAREPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       205 Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~  233 (604)
                      ||.|.+ |+..      ...|.||.-|.-
T Consensus       255 GHDH~l-q~i~------~~gt~yIvSGaG  276 (394)
T PTZ00422        255 GYDRNM-EVLT------DEGTAHINCGSG  276 (394)
T ss_pred             ccccce-EEec------CCCceEEEeCcc
Confidence            998754 5431      224778876663

>COG1768 Predicted phosphohydrolase [General function prediction only]

Probab=96.84  E-value=0.028  Score=53.62  Aligned_cols=147  Identities=19%  Similarity=0.233  Sum_probs=87.8

Q ss_pred             hhcCCCcEEEEecCC-CCC-ChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCCceecCCEE
Q 007415           28 KSAGPFDAVLCVGQF-FPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLF  105 (604)
Q Consensus        28 ~k~GpfD~vi~~GDf-f~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~  105 (604)
                      .+-.|-|.|++.||+ ..- -+++.++| .++   ..+|-.-|.+-|||+--..-..+|.+            -+.+-++
T Consensus        39 ~~v~~eDiVllpGDiSWaM~l~ea~~Dl-~~i---~~LPG~K~m~rGNHDYWw~s~skl~n------------~lp~~l~  102 (230)
T COG1768          39 SKVSPEDIVLLPGDISWAMRLEEAEEDL-RFI---GDLPGTKYMIRGNHDYWWSSISKLNN------------ALPPILF  102 (230)
T ss_pred             hcCChhhEEEecccchhheechhhhhhh-hhh---hcCCCcEEEEecCCccccchHHHHHh------------hcCchHh
Confidence            344477999999998 222 12222233 344   45677789999999843222333321            1345678


Q ss_pred             EcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHH-------HH--hhcCCCCcc--EEEeCCCCcccccccccc
Q 007415          106 WLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDAL-------RA--LAEEPGIVD--LFLTNEWPSGVTNKAAAS  174 (604)
Q Consensus       106 ~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L-------~~--l~~~~~~vD--ILLTh~wP~gi~~~~~~~  174 (604)
                      ||+. + +.+..+-|+|.-|-.+.+.. +..+|++|-+.+       +-  .+....+++  |+.||-+|..=.      
T Consensus       103 ~~n~-~-f~l~n~aI~G~RgW~s~~~~-~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~------  173 (230)
T COG1768         103 YLNN-G-FELLNYAIVGVRGWDSPSFD-SEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDD------  173 (230)
T ss_pred             hhcc-c-eeEeeEEEEEeecccCCCCC-cCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCC------
Confidence            8874 3 34545777777676554432 345888775532       21  112233444  688999997421      


Q ss_pred             ccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 007415          175 DMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV  209 (604)
Q Consensus       175 ~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~  209 (604)
                               ..++ .+.+++++.|+...+.||.|.
T Consensus       174 ---------~t~~-~~sevlee~rv~~~lyGHlHg  198 (230)
T COG1768         174 ---------GTPG-PFSEVLEEGRVSKCLYGHLHG  198 (230)
T ss_pred             ---------CCCc-chHHHHhhcceeeEEeeeccC
Confidence                     1122 578899999999999999653

>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain

Probab=96.76  E-value=0.0031  Score=65.22  Aligned_cols=204  Identities=16%  Similarity=0.205  Sum_probs=101.5

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      ++|.|+||+||++..+...+..+.  ..+.+-++++||+..-++...+-+.-++.-....|-.++.+-||||...  +..
T Consensus        28 ~~i~vvGDiHG~~~~l~~ll~~~~--~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~--~~~  103 (271)
T smart00156       28 APVTVCGDIHGQFDDLLRLFDLNG--PPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRS--MNE  103 (271)
T ss_pred             CCEEEEEeCcCCHHHHHHHHHHcC--CCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHH--HHH
Confidence            589999999999998876665432  1246899999999765443333232222212345667899999999632  221


Q ss_pred             HhccccccCccc-----CCce----ecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc---C
Q 007415           84 ASKNSANQGFKM-----DGFK----VTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE---E  151 (604)
Q Consensus        84 l~~~~~~~~~~~-----~g~e----i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~---~  151 (604)
                      ..      ||..     -+.+    +...+.+|.-  ...+++..+..=||..+ ..     -+-++++.+.....   .
T Consensus       104 ~~------gf~~e~~~~~~~~l~~~~~~~f~~LPl--~aii~~~~~~vHgGi~~-~~-----~~l~~i~~i~r~~~~~~~  169 (271)
T smart00156      104 IY------GFYDECKRKYGEEIYEKFQEAFSWLPL--AALIDNKILCMHGGLSP-DL-----TTLDDIRKLKRPQEPPDE  169 (271)
T ss_pred             hc------cchhhhhhhcCHHHHHHHHHHHhhChh--heEEcCeEEEEecCCCC-cc-----CCHHHHhcccCCCCCCch
Confidence            10      0000     0000    1111122221  01233434444445422 11     13444444432110   0


Q ss_pred             CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC--cccccccccCCCcceeEEEE
Q 007415          152 PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV--FYAREPYSNVDAVHVTRFLG  229 (604)
Q Consensus       152 ~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~--fyEr~Py~~~~~~~~TRFI~  229 (604)
                      ..-.|+|-+- |-........+   +.+. ....|.+++.+++++..=++.+-||+-.  .|+..   . +..-+|-|=+
T Consensus       170 ~~~~dllWsD-P~~~~~~~~~~---~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa  240 (271)
T smart00156      170 GLLIDLLWSD-PDQPVDGFQPS---IRGA-SYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFF---H-DRKLVTIFSA  240 (271)
T ss_pred             hhhhheeecC-CCcccCCCccC---CCCC-ccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEe---c-CCcEEEEECC
Confidence            1113433322 21111111110   1111 1246899999999999999999999532  44421   2 2455777776


Q ss_pred             cCCCC
Q 007415          230 LAPVG  234 (604)
Q Consensus       230 L~~~g  234 (604)
                      ..-++
T Consensus       241 ~~y~~  245 (271)
T smart00156      241 PNYCG  245 (271)
T ss_pred             ccccc
Confidence            55544

Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.

>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain

Probab=96.71  E-value=0.0029  Score=66.80  Aligned_cols=73  Identities=15%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .++.|+||+||++..|...++...... +-+.+|.+||+..-+....+-+.-++.-....|--+|.+-||||..
T Consensus        51 ~~~~vvGDiHG~~~dL~~il~~~g~~~-~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~  123 (321)
T cd07420          51 KQVTICGDLHGKLDDLFLIFYKNGLPS-PENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDH  123 (321)
T ss_pred             CCeEEEEeCCCCHHHHHHHHHHcCCCC-ccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhh
Confidence            379999999999998876665321110 1267999999976544433333333322233455688999999964

RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related

Probab=96.63  E-value=0.0035  Score=63.01  Aligned_cols=68  Identities=12%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             EEEEEcCCC-CC---------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCCc
Q 007415            5 RILLCGDVL-GR---------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIP   66 (604)
Q Consensus         5 KILv~GDvh-G~---------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~p   66 (604)
                      +.|+++|+| |.               +.++++++.++-++. ++|.||++||++-...  ....++.+++.   .+..+
T Consensus        16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~~~~~~~~~~l~---~~~~~   91 (225)
T TIGR00024        16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-GIEALIINGDLKHEFKKGLEWRFIREFIE---VTFRD   91 (225)
T ss_pred             CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-CCCEEEEcCccccccCChHHHHHHHHHHH---hcCCc
Confidence            689999999 42               123455555554555 4899999999974311  22334556663   34469


Q ss_pred             EEEEcCCCCC
Q 007415           67 TYFIGDYGVG   76 (604)
Q Consensus        67 tyfv~GNh~~   76 (604)
                      +++|.||||.
T Consensus        92 v~~V~GNHD~  101 (225)
T TIGR00024        92 LILIRGNHDA  101 (225)
T ss_pred             EEEECCCCCC
Confidence            9999999984

Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.

>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain

Probab=96.52  E-value=0.029  Score=58.32  Aligned_cols=119  Identities=12%  Similarity=-0.012  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hh----HHHHHHHhcc
Q 007415            2 SPPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--EL----LDEFMNYVEG   59 (604)
Q Consensus         2 ~~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~----~~~~~~~l~g   59 (604)
                      -+++||.++|+||++.                .+.+.+.+..++.++--++|=+||++....  ..    -.-..+++  
T Consensus         4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~m--   81 (282)
T cd07407           4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIF--   81 (282)
T ss_pred             ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHH--
Confidence            3578999999999864                233444333233344346667999865311  00    01122333  


Q ss_pred             cCCCCCcEEEEcCCCCCh--HHHHHHHhccccccCcccCCceecCCEEEcCC----------CCeEEEc-CcEEEEEecc
Q 007415           60 RSEIPIPTYFIGDYGVGA--AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLH-GLSVAYLSGR  126 (604)
Q Consensus        60 ~~~~p~ptyfv~GNh~~~--~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~----------~gv~~~~-GlrIa~lgG~  126 (604)
                       ..+++- +++.||||-.  ...++.+......    ..-.+++.|+++-..          ..|++.+ |+||+.+|=.
T Consensus        82 -N~mgyD-a~tlGNHEFd~g~~~l~~l~~~~~~----~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGlt  155 (282)
T cd07407          82 -RMMPYD-LLTIGNHELYNYEVADDEYEGFVPS----WGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFL  155 (282)
T ss_pred             -HhcCCc-EEeecccccCccccHHHHHHHHHhh----cCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEe
Confidence             223332 6889999974  1122322110000    123478899876431          2234555 9999999876


Q ss_pred             cC
Q 007415          127 QS  128 (604)
Q Consensus       127 ~~  128 (604)
                      .+
T Consensus       156 t~  157 (282)
T cd07407         156 FD  157 (282)
T ss_pred             cc
Confidence            43

YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at

>cd07416 MPP_PP2B PP2B, metallophosphatase domain

Probab=96.51  E-value=0.0057  Score=64.32  Aligned_cols=72  Identities=13%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .+|.|+||+||++..+...+.....  .+-|.+|++||+..-+....+-+.-++.-....|--++.+-||||..
T Consensus        43 ~~i~ViGDIHG~~~dL~~l~~~~g~--~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~  114 (305)
T cd07416          43 APVTVCGDIHGQFYDLLKLFEVGGS--PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR  114 (305)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHhcCC--CCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence            4799999999999987765543211  13589999999966544333333333322234556689999999963

PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G

>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=96.47  E-value=0.0067  Score=63.78  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=72.1

Q ss_pred             CCCcccCCCCC--CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc----
Q 007415          389 KECWFCLSSPS--VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ----  462 (604)
Q Consensus       389 ~~C~FC~~~~~--~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~----  462 (604)
                      ..|.||.....  .....||..+++.-++.|-.+.-|-+++|+|++|+..+.++++++..+|-...+.+...|...    
T Consensus       185 ~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~  264 (338)
T COG1085         185 GSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNS  264 (338)
T ss_pred             CCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            47999987632  234577777777777777777889999999999999999999999999998888777776642    


Q ss_pred             -CCceEEEeeccCC----CCeeEEEEEe
Q 007415          463 -GKEAVFFEWLSKR----GTHANLQAVP  485 (604)
Q Consensus       463 -g~~~v~~E~~~~~----~~H~HihvvP  485 (604)
                       .+...|.. +...    -.|+|+|++|
T Consensus       265 fpY~m~~h~-ap~~~~~~~~~~h~~~~p  291 (338)
T COG1085         265 FPYSMGFHQ-APFNEVNEHYHLHAEIYP  291 (338)
T ss_pred             Cceeeeeec-CCCCcccccceEEEEEcc
Confidence             24455544 2222    3589999998

>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain

Probab=96.40  E-value=0.0059  Score=63.81  Aligned_cols=203  Identities=14%  Similarity=0.152  Sum_probs=100.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      .++.|+||+||++..+...+.....  -+-+-+|++||+..-+....+-+.-++.-....|--++.+-||||..  .+..
T Consensus        50 ~~i~viGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~--~~~~  125 (293)
T cd07414          50 APLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA--SINR  125 (293)
T ss_pred             CceEEEEecCCCHHHHHHHHHhcCC--CCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchh--hHhh
Confidence            4699999999999988766654321  14578999999976543333333323222234555689999999963  1211


Q ss_pred             HhccccccCccc-----CCce----ecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC-C
Q 007415           84 ASKNSANQGFKM-----DGFK----VTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE-P  152 (604)
Q Consensus        84 l~~~~~~~~~~~-----~g~e----i~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~-~  152 (604)
                      ..      ||..     -+.+    +.....+|.   +. .+++..+..=||..+. .     -+.++++.+...... .
T Consensus       126 ~~------gf~~e~~~~y~~~l~~~~~~~f~~lP---laa~i~~~i~cvHgGi~p~-~-----~~l~~i~~i~r~~~~~~  190 (293)
T cd07414         126 IY------GFYDECKRRYNIKLWKTFTDCFNCLP---VAAIIDEKIFCMHGGLSPD-L-----QSMEQIRRIMRPTDVPD  190 (293)
T ss_pred             hc------chhhHHHHhhhHHHHHHHHHHHHHhH---HHHhhCCcEEEEccCCCcc-c-----CcHHHHhcccCCCCCCc
Confidence            10      0000     0000    001111111   11 2344444444555321 1     124444443321100 0


Q ss_pred             C--CccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEE
Q 007415          153 G--IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFL  228 (604)
Q Consensus       153 ~--~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI  228 (604)
                      .  -.|+|-+ +|-..+......   +.+. ....|..++.+++++..=++.+=||+-  ..|+.  + . +..-+|-|=
T Consensus       191 ~~~~~dllWs-DP~~~~~~~~~~---~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~--~-~-~~~~iTvfS  261 (293)
T cd07414         191 QGLLCDLLWS-DPDKDVQGWGEN---DRGV-SFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEF--F-A-KRQLVTLFS  261 (293)
T ss_pred             hhhHhhhhcc-CcccccCCCccC---CCCc-ceecCHHHHHHHHHHcCCeEEEECCccccCeEEE--e-C-CCcEEEEec
Confidence            0  1233332 211111111100   1111 124699999999999999999999953  35552  1 2 245578887


Q ss_pred             EcCCCC
Q 007415          229 GLAPVG  234 (604)
Q Consensus       229 ~L~~~g  234 (604)
                      +..-+|
T Consensus       262 a~~Y~~  267 (293)
T cd07414         262 APNYCG  267 (293)
T ss_pred             CCcccC
Confidence            666554

PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg

>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed

Probab=96.38  E-value=0.084  Score=60.17  Aligned_cols=114  Identities=18%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             CCEEEEEcCCCCCHHH----------HHHHHHHHHh---hcCCCcEEEEecCCCCCChhh-H---HHHHHHhcccCCCCC
Q 007415            3 PPRILLCGDVLGRLNQ----------LFKRVQSVNK---SAGPFDAVLCVGQFFPDSSEL-L---DEFMNYVEGRSEIPI   65 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~----------l~~kv~~l~~---k~GpfD~vi~~GDff~~~~~~-~---~~~~~~l~g~~~~p~   65 (604)
                      ++.||.+.|+||.+..          +-..++++.+   +.++--++|-+||+|...... .   .-..+.+   ..+++
T Consensus        34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~m---N~~g~  110 (551)
T PRK09558         34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM---NLIGY  110 (551)
T ss_pred             EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHH---hcCCC
Confidence            3679999999998742          1222333322   124556889999997642110 0   0011222   23344


Q ss_pred             cEEEEcCCCCChHH--HHHHHhccccccCcccCCceecCCEEEcC-------CCCeEEEcCcEEEEEeccc
Q 007415           66 PTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        66 ptyfv~GNh~~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~~  127 (604)
                      - +++.||||-...  .+..+-..       ..-.++|.|+++-.       ..-+++++|+||+.+|=..
T Consensus       111 D-a~tlGNHEFD~G~~~L~~~~~~-------a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t  173 (551)
T PRK09558        111 D-AMAVGNHEFDNPLSVLRKQEKW-------AKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTT  173 (551)
T ss_pred             C-EEcccccccCcCHHHHHHhhcc-------CCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEec
Confidence            4 456699996532  33332111       12357888987642       1234467899999999763

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain

Probab=96.36  E-value=0.009  Score=57.07  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             EEEcCCCCCHHHHHH---------------HHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEc
Q 007415            7 LLCGDVLGRLNQLFK---------------RVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIG   71 (604)
Q Consensus         7 Lv~GDvhG~~~~l~~---------------kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~   71 (604)
                      ++++|+|=.....+.               .++.+++.-.+.|.||++||++......  ...+++   .+.+.|+++|.
T Consensus         2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~--~~~~~l---~~~~~~~~~v~   76 (168)
T cd07390           2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG--TELELL---SRLNGRKHLIK   76 (168)
T ss_pred             eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH--HHHHHH---HhCCCCeEEEe
Confidence            678888865543322               2445555445689999999997653321  113344   34567899999


Q ss_pred             CCCCC
Q 007415           72 DYGVG   76 (604)
Q Consensus        72 GNh~~   76 (604)
                      ||||.
T Consensus        77 GNHD~   81 (168)
T cd07390          77 GNHDS   81 (168)
T ss_pred             CCCCc
Confidence            99985

This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d

>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

Probab=96.35  E-value=0.0064  Score=63.28  Aligned_cols=205  Identities=14%  Similarity=0.081  Sum_probs=101.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH----
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----   79 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~----   79 (604)
                      .+|.|+||+||++..+...+.....  .+-+.+|++||+..-+....+-+.-++.-....|-.++.+-||||...-    
T Consensus        42 ~~i~vvGDIHG~~~dL~~ll~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~y  119 (285)
T cd07415          42 SPVTVCGDIHGQFYDLLELFRVGGD--PPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVY  119 (285)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHcCC--CCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhc
Confidence            3689999999999988765543321  1457899999997654433332322222123456679999999996310    


Q ss_pred             -HHHHHhccccccCcccCC--ceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc---CC
Q 007415           80 -VLLAASKNSANQGFKMDG--FKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE---EP  152 (604)
Q Consensus        80 -~l~~l~~~~~~~~~~~~g--~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~---~~  152 (604)
                       +..+... .+    ....  ..+.....+|.   +. .+++..++.=||. +....     +.++++.|.....   ..
T Consensus       120 gf~~e~~~-~y----~~~~l~~~~~~~f~~lP---laaii~~~i~cvHgGi-~p~~~-----~~~~i~~i~r~~~~~~~~  185 (285)
T cd07415         120 GFYDECLR-KY----GNANVWKYCTDLFDYLP---LAALIDNQIFCVHGGL-SPSID-----TLDQIRAIDRFQEVPHEG  185 (285)
T ss_pred             chhHHHHH-hc----CchHHHHHHHHHHHHhH---HHhEeCCeEEEEcCCC-CCCcc-----cHHHhhcccCCCCCCCCC
Confidence             1111100 00    0000  00001111111   11 2344334433444 22111     2444444433211   01


Q ss_pred             CCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEc
Q 007415          153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGL  230 (604)
Q Consensus       153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L  230 (604)
                      --.|+|-+ +|-.. .....   -+.+. ....|.+++.+++++..=++.+=||+-  ..|+..   . +..-+|-|=+.
T Consensus       186 ~~~dllWs-DP~~~-~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa~  255 (285)
T cd07415         186 PMCDLLWS-DPDDI-EGWGI---SPRGA-GYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWM---F-DDKLVTVWSAP  255 (285)
T ss_pred             CccceEec-CCCcc-CCCCc---CCCCC-ccccCHHHHHHHHHHCCCeEEEEcCccccceEEEe---c-CCcEEEEecCC
Confidence            12455544 22111 11111   01121 134699999999999999999999953  345532   1 13457888766


Q ss_pred             CCCC
Q 007415          231 APVG  234 (604)
Q Consensus       231 ~~~g  234 (604)
                      .-++
T Consensus       256 ~y~~  259 (285)
T cd07415         256 NYCY  259 (285)
T ss_pred             cccC
Confidence            5443

PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2

>PTZ00239 serine/threonine protein phosphatase 2A; Provisional

Probab=96.31  E-value=0.0073  Score=63.35  Aligned_cols=206  Identities=13%  Similarity=0.077  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-----
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-----   79 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-----   79 (604)
                      .|.|+||+||++..+...+..+...  +-+-+|++||+..-+....+-+.-++.-....|--++.+-||||...-     
T Consensus        44 ~i~vvGDIHG~~~~L~~l~~~~~~~--~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g  121 (303)
T PTZ00239         44 PVNVCGDIHGQFYDLQALFKEGGDI--PNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYG  121 (303)
T ss_pred             CEEEEEeCCCCHHHHHHHHHhcCCC--CCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcC
Confidence            5899999999999887666543211  457899999996544332332332322223445568999999996310     


Q ss_pred             HHHHHhccccccCcccCCc-eecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc---CCCCc
Q 007415           80 VLLAASKNSANQGFKMDGF-KVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE---EPGIV  155 (604)
Q Consensus        80 ~l~~l~~~~~~~~~~~~g~-ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~---~~~~v  155 (604)
                      +.++... .+  |. .... .+.....+|.=.  ..+++..++.=||.-+. .     -+.+++..+.....   ...-.
T Consensus       122 f~~e~~~-ky--~~-~~~~~~~~~~f~~LPla--aii~~~i~cvHgGi~p~-~-----~~l~~i~~i~r~~~~~~~~~~~  189 (303)
T PTZ00239        122 FYEEILR-KY--GN-SNPWRLFMDVFDCLPLA--ALIEGQILCVHGGLSPD-M-----RTIDQIRTIDRKIEIPHEGPFC  189 (303)
T ss_pred             hHHHHHH-Hh--cC-hhHHHHHHHHHHhCchh--eEEcCeEEEEcCccCcc-c-----ccHhhhccccCCCCCCCCCCce
Confidence            1111110 00  00 0000 001111122210  13456555555665321 1     12334444332111   01124


Q ss_pred             cEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCCC
Q 007415          156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       156 DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~  233 (604)
                      |||-+- |. .......   -+.+. ....|.+++.+++++.+=++.+=||+-  ..|+.. |  .+..-+|-|=+..-+
T Consensus       190 dllWsD-P~-~~~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~--~~~~~iTvfSa~~Y~  260 (303)
T PTZ00239        190 DLMWSD-PE-EVEYWAV---NSRGA-GYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYW-F--PDQNLVTVWSAPNYC  260 (303)
T ss_pred             eeEecC-cc-ccCCCcc---CCCCC-ccccCHHHHHHHHHHCCCcEEEEcChhhccceEEE-e--CCCeEEEEECCCccc
Confidence            554432 21 1111111   01121 125799999999999999999999953  245431 1  112357888765444

>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain

Probab=96.24  E-value=0.0082  Score=63.35  Aligned_cols=211  Identities=13%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      .++.|+||+||++..+...+....-. .+-|-+|.+||+..-++...+-+.-++.-....|--++.+-||||..  .+..
T Consensus        60 ~~~~VvGDIHG~~~dL~~ll~~~g~~-~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~--~~~~  136 (316)
T cd07417          60 EKITVCGDTHGQFYDLLNIFELNGLP-SETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD--NMNK  136 (316)
T ss_pred             ceeEEeecccCCHHHHHHHHHhcCCC-CccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH--HHHH
Confidence            46999999999999887655432110 01257999999975443333333333221233455688999999963  2221


Q ss_pred             Hhc--cccccCcccCC-ceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC---CCCccE
Q 007415           84 ASK--NSANQGFKMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE---PGIVDL  157 (604)
Q Consensus        84 l~~--~~~~~~~~~~g-~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~---~~~vDI  157 (604)
                      ...  .+....+...- ..+...+.+|.-.-  .+++..+..=||..+..     ..+-++++.+......   .--.|+
T Consensus       137 ~~gf~~e~~~k~~~~l~~~~~~~f~~LPlaa--ii~~~~~~vHgGi~~~~-----~~~l~~i~~i~r~~~~~~~~~~~dl  209 (316)
T cd07417         137 MYGFEGEVKAKYNEQMFDLFSEVFNWLPLAH--LINGKVLVVHGGLFSDD-----GVTLDDIRKIDRFRQPPDSGLMCEL  209 (316)
T ss_pred             HhhhcchhhhcccHHHHHHHHHHHHhchHhh--eeCCeEEEEccccccCC-----CccHHHhhcccCCCCCCccccceee
Confidence            110  00000000000 00111112221111  23454455555553321     1234444444332111   011344


Q ss_pred             EEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCCCC
Q 007415          158 FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPVG  234 (604)
Q Consensus       158 LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~g  234 (604)
                      |-+ +|-. ......   .+.+.. ...|.+++.+++++..=++.+-||+-  ..|+..   . +..-+|-|=+..-+|
T Consensus       210 lWs-DP~~-~~~~~~---s~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa~~Y~~  278 (316)
T cd07417         210 LWS-DPQP-QPGRSP---SKRGVG-CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVE---H-DGKCITVFSAPNYCD  278 (316)
T ss_pred             eec-CCCC-CCCCCc---cCCCCc-eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEe---c-CCeEEEEeCCccccC
Confidence            433 2111 111011   011211 24689999999999999999999963  355532   1 245678887665443

Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel

>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional

Probab=96.22  E-value=0.007  Score=63.23  Aligned_cols=205  Identities=12%  Similarity=0.121  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-----
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-----   79 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-----   79 (604)
                      .+.|+||+||++..+..-++.+..  .+.+-+|++||+..-++...+-+.-++.-....|-.++.+-||||...-     
T Consensus        53 p~~ViGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g  130 (294)
T PTZ00244         53 PVRVCGDTHGQYYDLLRIFEKCGF--PPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYG  130 (294)
T ss_pred             CceeeccCCCCHHHHHHHHHHcCC--CCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccC
Confidence            488999999999988766654422  2467888999996654433333322222123346678999999995310     


Q ss_pred             HHHHHhccccccCcccCC-ceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC-CC--C
Q 007415           80 VLLAASKNSANQGFKMDG-FKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE-PG--I  154 (604)
Q Consensus        80 ~l~~l~~~~~~~~~~~~g-~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~-~~--~  154 (604)
                      +.+++.. .+    ...- ..+.....+|.   +. .+++..+..=||..+. .     -+-++++.+..-... ..  -
T Consensus       131 f~~e~~~-~y----~~~l~~~~~~~f~~lP---laaii~~~il~vHgGi~p~-~-----~~l~~i~~i~rp~~~~~~~~~  196 (294)
T PTZ00244        131 FFDDVKR-RY----NIKLFKAFTDVFNTMP---VCCVISEKIICMHGGLSPD-L-----TSLASVNEIERPCDVPDRGIL  196 (294)
T ss_pred             hHHHHHH-Hh----hHHHHHHHHHHHHhCc---hheEecCeeEEEcCCCCch-h-----hHHHHhhhhccccCCCccchh
Confidence            1111110 00    0000 00111111121   11 2344444444554321 0     023333333321100 01  1


Q ss_pred             ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCC
Q 007415          155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAP  232 (604)
Q Consensus       155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~  232 (604)
                      .|+|-+- |-..+.....   .+.+. ....|.+++.+++++..=++.+=||+-  ..|+.   .. +..-+|-|=+..-
T Consensus       197 ~dllWsD-P~~~~~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~---~~-~~~~iTvfSa~~Y  267 (294)
T PTZ00244        197 CDLLWAD-PEDEVRGFLE---SDRGV-SYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGF---FA-SRQLVTVFSAPNY  267 (294)
T ss_pred             heeeecC-cccccCCCCc---CCCCC-ccccCHHHHHHHHHHcCCcEEEEcCccccCceEE---cC-CCeEEEEeCCccc
Confidence            3444332 2111111111   01121 135799999999999999999999953  34552   12 2456788876654


Q ss_pred             CC
Q 007415          233 VG  234 (604)
Q Consensus       233 ~g  234 (604)
                      +|
T Consensus       268 ~~  269 (294)
T PTZ00244        268 CG  269 (294)
T ss_pred             cC
Confidence            44

>PTZ00480 serine/threonine-protein phosphatase; Provisional

Probab=96.20  E-value=0.0096  Score=62.83  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH-----
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA-----   78 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~-----   78 (604)
                      .+|.|+||+||++..+...+..... . +-+-.|++||+..-+....+-+.-++.-....|-.++.+-||||...     
T Consensus        59 ~~i~vvGDIHG~~~dL~~l~~~~g~-~-~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~y  136 (320)
T PTZ00480         59 APLKICGDVHGQYFDLLRLFEYGGY-P-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY  136 (320)
T ss_pred             CCeEEEeecccCHHHHHHHHHhcCC-C-CcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhc
Confidence            3699999999999988765543211 1 35778899999764433233333333222445667899999999631     


Q ss_pred             HHHHHHhccccccCcccCCc-eecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC---CCC
Q 007415           79 KVLLAASKNSANQGFKMDGF-KVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE---PGI  154 (604)
Q Consensus        79 ~~l~~l~~~~~~~~~~~~g~-ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~---~~~  154 (604)
                      .+..+... .+    ...-. .+.....+|.-.-  .+++..+..=||+-+. -     -+-++++.+..-...   .--
T Consensus       137 gF~~e~~~-~y----~~~l~~~~~~~F~~LPlaA--iI~~~i~cvHGGI~p~-~-----~~l~~i~~i~rp~~~~~~~~~  203 (320)
T PTZ00480        137 GFYDECKR-RY----TIKLWKTFTDCFNCLPVAA--LIDEKILCMHGGLSPE-L-----SNLEQIRRIMRPTDVPDTGLL  203 (320)
T ss_pred             chHHHHHh-hc----CHHHHHHHHHHHHhccHhh--eecCcEEEEcCCcCcc-c-----CCHHHHhcccCCCCCCccchh
Confidence            01111100 00    00000 0001111111100  2445444555555321 1     123334333321100   011


Q ss_pred             ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCC
Q 007415          155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAP  232 (604)
Q Consensus       155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~  232 (604)
                      .|+|-+ +|-..+......   +.+. ....|.+++.+++++..=.+.+=||+-  ..|+..   . +..-+|-|=+..-
T Consensus       204 ~dllWS-DP~~~~~~~~~s---~RG~-g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~---~-~~~~iTvFSa~~Y  274 (320)
T PTZ00480        204 CDLLWS-DPDKDVQGWADN---ERGV-SYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFF---S-KRQLVTLFSAPNY  274 (320)
T ss_pred             hheeec-CcccccCCCccC---CCCC-ccccCHHHHHHHHHhCCCcEEEEcCccccCceEEe---C-CCcEEEEeCCccc
Confidence            344433 222112111110   1121 124799999999999999999999953  345531   2 2456888887665


Q ss_pred             CCC
Q 007415          233 VGN  235 (604)
Q Consensus       233 ~gn  235 (604)
                      +|.
T Consensus       275 ~~~  277 (320)
T PTZ00480        275 CGE  277 (320)
T ss_pred             CCC
Confidence            553

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain

Probab=96.15  E-value=0.14  Score=53.37  Aligned_cols=169  Identities=12%  Similarity=0.075  Sum_probs=85.3

Q ss_pred             HHHHHHHhhcCCCcEEEEecCCCCCChhh----------HHHHHHHhcccCCCCCcEEEEcCCCCChHH-----------
Q 007415           21 KRVQSVNKSAGPFDAVLCVGQFFPDSSEL----------LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-----------   79 (604)
Q Consensus        21 ~kv~~l~~k~GpfD~vi~~GDff~~~~~~----------~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-----------   79 (604)
                      +.++.+.+...++|+||+.||+.......          ...+.+.+.. .-..+|+|++.||||..+.           
T Consensus        57 s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~  135 (296)
T cd00842          57 SALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKK-AFPDTPVYPALGNHDSYPVNQFPPNNSPSW  135 (296)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHH-hCCCCCEEEcCCCCCCCcccccCCcccccH
Confidence            33444444445799999999997642210          1112222221 1246899999999986421           


Q ss_pred             HHHHHhccccccCcccCCceec-C-CEEEcCCCCeE--E-EcCcEEEEEecccCCCCCCC-----CCCCHHHHHHHHH-h
Q 007415           80 VLLAASKNSANQGFKMDGFKVT-D-NLFWLKGSGNF--T-LHGLSVAYLSGRQSSEGQQF-----GTYSQDDVDALRA-L  148 (604)
Q Consensus        80 ~l~~l~~~~~~~~~~~~g~ei~-~-Nl~~Lg~~gv~--~-~~GlrIa~lgG~~~~~~~~~-----~~~te~d~~~L~~-l  148 (604)
                      .++.+.. .|.       .++. . .-.+. ++|-+  . ..|++|.+|.-..-.....+     .....++++-|.+ |
T Consensus       136 ~~~~~~~-~w~-------~~l~~~~~~~~~-~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L  206 (296)
T cd00842         136 LYDALAE-LWK-------SWLPEEAEETFK-KGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDEL  206 (296)
T ss_pred             HHHHHHH-HHH-------hhcCHHHHHHhh-cceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHH
Confidence            1222210 010       0000 0 00111 13333  3 46889988875532211100     1112334443332 1


Q ss_pred             h--cCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhC--CCEEEEccCCCc
Q 007415          149 A--EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIK--PRYHIAGSKGVF  210 (604)
Q Consensus       149 ~--~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lk--PrYhf~Gh~~~f  210 (604)
                      .  +..+.-=|++.|.+|...... .          .......+.+|+++.+  ....|+||.|..
T Consensus       207 ~~a~~~~~~v~I~~HiPp~~~~~~-~----------~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d  261 (296)
T cd00842         207 QEAEQAGEKVWIIGHIPPGVNSYD-T----------LENWSERYLQIINRYSDTIAGQFFGHTHRD  261 (296)
T ss_pred             HHHHHCCCeEEEEeccCCCCcccc-c----------chHHHHHHHHHHHHHHHhhheeeecccccc
Confidence            1  111222368899988643210 0          0135677888999887  788999998864

Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but

>cd07418 MPP_PP7 PP7, metallophosphatase domain

Probab=96.12  E-value=0.011  Score=63.54  Aligned_cols=73  Identities=14%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .+|+|+||+||++..+...+..... ..+-+.+|++||+..-++...+-+.-++.-....|--+|.+-||||..
T Consensus        66 ~~i~VvGDIHG~~~dL~~ll~~~g~-~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~  138 (377)
T cd07418          66 CEVVVVGDVHGQLHDVLFLLEDAGF-PDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESK  138 (377)
T ss_pred             CCEEEEEecCCCHHHHHHHHHHhCC-CCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence            3689999999999988766653211 101246899999965433323323222221234566689999999963

PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,

>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]

Probab=96.06  E-value=0.093  Score=59.30  Aligned_cols=213  Identities=13%  Similarity=0.077  Sum_probs=116.1

Q ss_pred             CCEEEEEcCCCCCHH---------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hh---HHHHHHHhcccCC
Q 007415            3 PPRILLCGDVLGRLN---------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--EL---LDEFMNYVEGRSE   62 (604)
Q Consensus         3 ~~KILv~GDvhG~~~---------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~---~~~~~~~l~g~~~   62 (604)
                      ++.||.+.|+||++.               .+...++.+.++. +-.++|=+||++....  ..   -.-..+++   ..
T Consensus        26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~-~~~llld~GD~~~G~~l~~~~~~g~~~~~~m---N~  101 (517)
T COG0737          26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAEN-KNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL---NA  101 (517)
T ss_pred             eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhc-CCeEEEeCCcccCCccccccccCCChHHHHH---hh
Confidence            578999999999998               6666666665555 4578999999865411  00   00122333   23


Q ss_pred             CCCcEEEEcCCCCChHH--HHHHHhccccccCcccCCceecCCEEEcC--------CCCeEEEcCcEEEEEecccCC--C
Q 007415           63 IPIPTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK--------GSGNFTLHGLSVAYLSGRQSS--E  130 (604)
Q Consensus        63 ~p~ptyfv~GNh~~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg--------~~gv~~~~GlrIa~lgG~~~~--~  130 (604)
                      ++.- +.+.||||....  .+..+...       ..-.+++.|++.-.        ..-|++++|++||.+|=.-+.  .
T Consensus       102 m~yD-a~tiGNHEFd~g~~~l~~~~~~-------~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~  173 (517)
T COG0737         102 LGYD-AMTLGNHEFDYGLEALARLLDE-------AKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPT  173 (517)
T ss_pred             cCCc-EEeecccccccCHHHHHHHHhc-------cCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccc
Confidence            3333 566779996532  24333211       11236888987661        223456789999999965321  1


Q ss_pred             CC--C---CCCCCHHHHHHHHHhhc--CCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCE
Q 007415          131 GQ--Q---FGTYSQDDVDALRALAE--EPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRY  201 (604)
Q Consensus       131 ~~--~---~~~~te~d~~~L~~l~~--~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrY  201 (604)
                      ..  .   -..|. +.++++.+...  ...++|  |+|||..-..-......  .+..          +....  .....
T Consensus       174 ~~~~~~~~~~~f~-d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~--~~~~----------~~~~~--~~iD~  238 (517)
T COG0737         174 WEKPNAIEGVTFR-DPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASE--VPGD----------VDVAV--PGIDL  238 (517)
T ss_pred             cccccccCCcEEc-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccc--cccc----------ccccc--cCcce
Confidence            00  0   12333 23333332210  012266  58899765533221110  0101          00000  33889


Q ss_pred             EEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415          202 HIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP  249 (604)
Q Consensus       202 hf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p  249 (604)
                      .|.||.|..++..-+..  ....|-.+.-|.+|.     ++.=+.|+-
T Consensus       239 i~~GH~H~~~~~~~~~~--~~~~t~ivqag~~gk-----~vG~~di~~  279 (517)
T COG0737         239 IIGGHSHTVFPGGDKPG--TVNGTPIVQAGEYGK-----YVGVLDITF  279 (517)
T ss_pred             EeccCCcccccCCcccC--ccCCEEEEccChhhC-----ceeEEEEEE
Confidence            99999887666543111  344688888888875     666666654

>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism

Probab=96.03  E-value=0.0085  Score=57.37  Aligned_cols=72  Identities=22%  Similarity=0.358  Sum_probs=45.6

Q ss_pred             CCCcccCCCC--CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007415          389 KECWFCLSSP--SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK  460 (604)
Q Consensus       389 ~~C~FC~~~~--~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~  460 (604)
                      +.|.||-.-.  ..+...||+.+++.-++.|-..--|--++|+|.+|..++.++++++..++....+-+...+.
T Consensus        13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d   86 (166)
T PF02744_consen   13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYD   86 (166)
T ss_dssp             SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhc
Confidence            4799997642  23345688889887777776677788999999999999999999988888776666555554

The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.

>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family

Probab=95.85  E-value=0.52  Score=52.24  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=69.3

Q ss_pred             EcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHH
Q 007415          115 LHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL  193 (604)
Q Consensus       115 ~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l  193 (604)
                      .+|++|.+|--.... ......+.+++++-|.+ |+.....-=|+++|.+|-.+.........+ +  ........+.++
T Consensus       299 ~ggvrfIvLDSt~~~-G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~p-g--~~~~n~~eLldL  374 (496)
T TIGR03767       299 AGGVRGISMDTTNRA-GGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDP-G--EKRHLGTELVSL  374 (496)
T ss_pred             ECCEEEEEEeCCCcC-CCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccc-c--ccccCHHHHHHH
Confidence            457788888554321 12234567787776665 333333456888998886542211000001 0  012234567777


Q ss_pred             HHHh-CCCEEEEccCCCccc---cc--c-----cccC-------CCcceeEEEEcCCCCCcccceeEEEeccCCCC
Q 007415          194 VAEI-KPRYHIAGSKGVFYA---RE--P-----YSNV-------DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAA  251 (604)
Q Consensus       194 ~~~l-kPrYhf~Gh~~~fyE---r~--P-----y~~~-------~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p~~  251 (604)
                      ++.. +-+.+|+||.|....   +.  |     -.|+       +-.+.=|.|-+..  |.+..-++.+-+|+-.+
T Consensus       375 L~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~~--n~dgt~si~tt~vd~~~  448 (496)
T TIGR03767       375 LLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELAD--NQDGTVSIFTTLIESAA  448 (496)
T ss_pred             HhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEEe--CCCCcEEEEEEecccCC
Confidence            7776 678899999764321   10  0     1121       1234556666653  33355678887776444

This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain

Probab=95.82  E-value=0.019  Score=55.01  Aligned_cols=58  Identities=12%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh-HHHHHHH-hcccCCCCCcEEEEcCCCCC
Q 007415           18 QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-LDEFMNY-VEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus        18 ~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-~~~~~~~-l~g~~~~p~ptyfv~GNh~~   76 (604)
                      ..++++.++..+. +.|.||++||++...... ...+... +.......+++|+|.||||.
T Consensus        28 ~~~~~l~~~~~~~-~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~   87 (172)
T cd07391          28 DTLERLDRLIEEY-GPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDG   87 (172)
T ss_pred             HHHHHHHHHHHhc-CCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCcc
Confidence            4556666665555 479999999998431110 1111111 11224567899999999985

This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro

>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.082  Score=48.94  Aligned_cols=111  Identities=20%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             CEEEEEcCCCC--CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH
Q 007415            4 PRILLCGDVLG--RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL   81 (604)
Q Consensus         4 ~KILv~GDvhG--~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l   81 (604)
                      |-+||+||.|=  +-..|-.|.+++. --|++.-|+|+|++.+.      +..+||   +.+.-.+-+|-|.-+      
T Consensus         1 mLvL~lgD~HiP~Ra~~Lp~KFkklL-vPgki~hilctGNlcs~------e~~dyl---k~l~~dvhiVrGeFD------   64 (183)
T KOG3325|consen    1 MLVLVLGDLHIPHRANDLPAKFKKLL-VPGKIQHILCTGNLCSK------ESYDYL---KTLSSDVHIVRGEFD------   64 (183)
T ss_pred             CEEEEeccccCCccccccCHHHHhcc-CCCceeEEEEeCCcchH------HHHHHH---HhhCCCcEEEecccC------
Confidence            45899999985  2233333444333 24789999999997653      356777   334344556666332      


Q ss_pred             HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 007415           82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT  160 (604)
Q Consensus        82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLT  160 (604)
                                          +|+.|-. .+++|++-++|+...|-.-.+..     +.+.+..|..    .-.||||||
T Consensus        65 --------------------~~~~yP~-~kvvtvGqfkIG~chGhqViP~g-----d~~sL~~LaR----qldvDILl~  113 (183)
T KOG3325|consen   65 --------------------ENLKYPE-NKVVTVGQFKIGLCHGHQVIPWG-----DPESLALLAR----QLDVDILLT  113 (183)
T ss_pred             --------------------ccccCCc-cceEEeccEEEEeecCcEeecCC-----CHHHHHHHHH----hcCCcEEEe
Confidence                                2333333 47889999999999998654333     2333333332    247999997

>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain

Probab=95.80  E-value=0.021  Score=60.17  Aligned_cols=72  Identities=18%  Similarity=0.307  Sum_probs=44.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh----cCC--CcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKS----AGP--FDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k----~Gp--fD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .+.|+||+||++..+...++.+.-.    .|.  ..-+|++||+..-++...+-+.-++.-....|--+|.+-||||.
T Consensus        49 ~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~  126 (311)
T cd07419          49 PIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHED  126 (311)
T ss_pred             CEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccch
Confidence            5899999999999887666544211    011  12477999986543332332322221123456678999999996

Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most

>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family

Probab=95.68  E-value=0.06  Score=55.46  Aligned_cols=70  Identities=13%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415            4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      ||||++||+-|+  -..+-+.+..+.+++ +.|++|+-||.....-.......+.|   .+.++.++-+ |||.-+.
T Consensus         1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~-~~D~vIaNgEn~~gG~Gi~~~~~~~L---~~~GvDviT~-GNH~~Dk   72 (266)
T TIGR00282         1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKY-QADLVIANGENTTHGKGLTLKIYEFL---KQSGVNYITM-GNHTWFQ   72 (266)
T ss_pred             CeEEEEEecCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCcccCCCCCCCHHHHHHH---HhcCCCEEEc-cchhccC
Confidence            799999999999  455556667666655 58999999997543211111222333   3455554444 7998653

A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.

>cd08162 MPP_PhoA_N Synechococcus sp

Probab=95.65  E-value=0.23  Score=52.52  Aligned_cols=120  Identities=13%  Similarity=0.001  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCCCHH------HHHHHHHHHHhh---cCCCcEEEEecCCCCCChhh------------HHHHHHHhcccCC
Q 007415            4 PRILLCGDVLGRLN------QLFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL------------LDEFMNYVEGRSE   62 (604)
Q Consensus         4 ~KILv~GDvhG~~~------~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~~------------~~~~~~~l~g~~~   62 (604)
                      +.||.+.|+||++.      .+-..++++.++   .++--++|-+||+|....-.            -.-..++++   .
T Consensus         1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN---~   77 (313)
T cd08162           1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILN---A   77 (313)
T ss_pred             CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHh---c
Confidence            36999999999853      333334444332   14556999999987532100            001123332   2


Q ss_pred             CCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC-----------------------CCCeEEEcC
Q 007415           63 IPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-----------------------GSGNFTLHG  117 (604)
Q Consensus        63 ~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-----------------------~~gv~~~~G  117 (604)
                      +++. +.+.||||-..  +.+..+-......+ ...-.+++.|+.+-+                       ..-|++++|
T Consensus        78 ~g~D-a~tlGNHEFD~G~~~L~~~~~~~~~~~-~a~fp~l~aNv~~~~~~~~~~~~~~~~~~~~~~~~~~~py~I~e~~G  155 (313)
T cd08162          78 LGVQ-AIALGNHEFDLGTDELADLIRPSAAGG-GAAFPYLSANLDFSGDANLAGLATADGQQAAAIAGKIAKSTVVEVGG  155 (313)
T ss_pred             cCCc-EEeccccccccCHHHHHHHHHhhcccc-cCCCCEEEecccccCCcccccccccccccccccccccCCeEEEEECC
Confidence            2232 57899999642  23332211100000 000236778876432                       123446799


Q ss_pred             cEEEEEecccC
Q 007415          118 LSVAYLSGRQS  128 (604)
Q Consensus       118 lrIa~lgG~~~  128 (604)
                      +||+.+|-...
T Consensus       156 ~kIGviGltt~  166 (313)
T cd08162         156 EKIGVVGATTP  166 (313)
T ss_pred             EEEEEEEeccc
Confidence            99999997643

strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat

>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain

Probab=95.53  E-value=0.26  Score=50.50  Aligned_cols=109  Identities=14%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-HH
Q 007415            5 RILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-VL   81 (604)
Q Consensus         5 KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-~l   81 (604)
                      |||++||+-|+  ...+.+.+.++-++. +.|++|.-||-............+.|   ..+++- +++.|||+-+.. ++
T Consensus         1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~-~~D~vi~NgEn~~gg~gl~~~~~~~L---~~~G~D-~iTlGNH~fD~gel~   75 (255)
T cd07382           1 KILFIGDIVGKPGRKAVKEHLPKLKKEY-KIDFVIANGENAAGGKGITPKIAKEL---LSAGVD-VITMGNHTWDKKEIL   75 (255)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCccccCCCCCCHHHHHHH---HhcCCC-EEEecccccCcchHH
Confidence            69999999997  445566677776555 58999999997433211112233333   345555 445589986543 33


Q ss_pred             HHHhccccccCcccCCceecCCEEE--cCC-CCeEEEcCcEEEEEecc
Q 007415           82 LAASKNSANQGFKMDGFKVTDNLFW--LKG-SGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        82 ~~l~~~~~~~~~~~~g~ei~~Nl~~--Lg~-~gv~~~~GlrIa~lgG~  126 (604)
                      ..+....        -....-|+..  .++ ..+++.+|++|+.+|=.
T Consensus        76 ~~l~~~~--------~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~  115 (255)
T cd07382          76 DFIDEEP--------RLLRPANYPPGTPGRGYGVVEVNGKKIAVINLM  115 (255)
T ss_pred             HHHhcCc--------CceEeeecCCCCCCCCeEEEEECCEEEEEEEEe
Confidence            4343110        0111223221  122 23456789999998754

DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.048  Score=55.32  Aligned_cols=208  Identities=14%  Similarity=0.133  Sum_probs=113.2

Q ss_pred             CCEEEEEcCC--CCCHHHHHHH--HHHHHhhcCCCcEEEEecCCCCC-------ChhhHHHHHHHhcccCCCCCcEEEEc
Q 007415            3 PPRILLCGDV--LGRLNQLFKR--VQSVNKSAGPFDAVLCVGQFFPD-------SSELLDEFMNYVEGRSEIPIPTYFIG   71 (604)
Q Consensus         3 ~~KILv~GDv--hG~~~~l~~k--v~~l~~k~GpfD~vi~~GDff~~-------~~~~~~~~~~~l~g~~~~p~ptyfv~   71 (604)
                      ..++||+||.  +|.|.+-..+  +.+|.+|. .+|+||-+||=|-.       ++.-.+.|+.+++. ..+-.|-|-|.
T Consensus        43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l-~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~-pSLQkpWy~vl  120 (336)
T KOG2679|consen   43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKL-DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA-PSLQKPWYSVL  120 (336)
T ss_pred             ceEEEEEcccccCCchhHHHHHHHHHhHHHhc-cceEEEecCCcccccCCCCCCChhHHhhhhhcccC-cccccchhhhc
Confidence            3689999997  4555543322  33444455 59999999994322       22333456666653 33557999999


Q ss_pred             CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEe--ccc-CCC-CCCCC------CCCHHH
Q 007415           72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLS--GRQ-SSE-GQQFG------TYSQDD  141 (604)
Q Consensus        72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lg--G~~-~~~-~~~~~------~~te~d  141 (604)
                      ||||---++-++|+.--.    ..+..|+|+..+|... -++++-+.-+.-+.  -.. .++ ..+|.      .|....
T Consensus       121 GNHDyrGnV~AQls~~l~----~~d~RW~c~rsf~~~a-e~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~  195 (336)
T KOG2679|consen  121 GNHDYRGNVEAQLSPVLR----KIDKRWICPRSFYVDA-EIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRAL  195 (336)
T ss_pred             cCccccCchhhhhhHHHH----hhccceecccHHhhcc-eeeeeeccccccchhhheecccccccccccCChHHHHHHHH
Confidence            999844344444430000    1345799999988873 44443322222221  110 110 11111      111111


Q ss_pred             HHHHH-HhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCC
Q 007415          142 VDALR-ALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD  220 (604)
Q Consensus       142 ~~~L~-~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~  220 (604)
                      ..-|. ++.+....--|++-|-+-..+..+++.          ..--+.+.-|+++.+--..++||.|.- |   +.- +
T Consensus       196 l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG~T----------~eL~~~LlPiL~~n~VdlY~nGHDHcL-Q---his-~  260 (336)
T KOG2679|consen  196 LSWLEVALKASRAKWKIVVGHHPIKSAGHHGPT----------KELEKQLLPILEANGVDLYINGHDHCL-Q---HIS-S  260 (336)
T ss_pred             HHHHHHHHHHhhcceEEEecccceehhhccCCh----------HHHHHHHHHHHHhcCCcEEEecchhhh-h---hcc-C
Confidence            11111 122234556788888887777655442          223456778899999999999996641 1   111 1


Q ss_pred             CcceeEEEEcCC
Q 007415          221 AVHVTRFLGLAP  232 (604)
Q Consensus       221 ~~~~TRFI~L~~  232 (604)
                      ....+-|+-=|.
T Consensus       261 ~e~~iqf~tSGa  272 (336)
T KOG2679|consen  261 PESGIQFVTSGA  272 (336)
T ss_pred             CCCCeeEEeeCC
Confidence            245677775553

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain

Probab=95.46  E-value=0.06  Score=53.02  Aligned_cols=42  Identities=14%  Similarity=0.062  Sum_probs=30.1

Q ss_pred             CCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCC
Q 007415          185 NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       185 ~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~  233 (604)
                      .....+.+++....+.+.++||.|..+...       ...+.++|+|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~-------~~~~~~~n~G~W  217 (217)
T cd07398         176 VFEEAVARLARRKGVDGVICGHTHRPALHE-------LDGKLYINLGDW  217 (217)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCCCCeEE-------ECCEEEEECCCC
Confidence            455567788889999999999988653322       124688888863

YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=95.28  E-value=0.022  Score=54.75  Aligned_cols=57  Identities=18%  Similarity=0.209  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhhcCCCcEEEEecCCCCCChhh-HHHHH-------HHhcccCC--CCCcEEEEcCCCCC
Q 007415           19 LFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-LDEFM-------NYVEGRSE--IPIPTYFIGDYGVG   76 (604)
Q Consensus        19 l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-~~~~~-------~~l~g~~~--~p~ptyfv~GNh~~   76 (604)
                      +.+++..+..+. +.|+||++||+|...... ..++.       .++.....  ..+|+|+|+||||.
T Consensus        33 ~~~~~~~~i~~~-~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~   99 (171)
T cd07384          33 MRRAFKTALQRL-KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDI   99 (171)
T ss_pred             HHHHHHHHHHhc-CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCcccc
Confidence            445555555544 589999999998653211 11122       22221110  26899999999984

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain

Probab=94.89  E-value=0.04  Score=52.10  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=27.5

Q ss_pred             CCcEEEEecCCCCCChh-hHHHH----HHHhcccC-CCCCcEEEEcCCCCC
Q 007415           32 PFDAVLCVGQFFPDSSE-LLDEF----MNYVEGRS-EIPIPTYFIGDYGVG   76 (604)
Q Consensus        32 pfD~vi~~GDff~~~~~-~~~~~----~~~l~g~~-~~p~ptyfv~GNh~~   76 (604)
                      ++|+||++||++..... ...++    ..+..-.. ..++|+|+|.||||.
T Consensus        38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~   88 (156)
T cd08165          38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDI   88 (156)
T ss_pred             CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCc
Confidence            58999999999865321 11112    22221111 136899999999973

MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to

>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]

Probab=94.83  E-value=0.064  Score=59.04  Aligned_cols=75  Identities=21%  Similarity=0.331  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCCC------------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHH------------
Q 007415            3 PPRILLCGDVLG------------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLD------------   51 (604)
Q Consensus         3 ~~KILv~GDvhG------------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~------------   51 (604)
                      .+||||..|+|-            .|. .|+-|-.|...+ .+|+|+.-||+|-++.       ...+            
T Consensus        13 tirILVaTD~HlGY~EkD~vrg~DSf~-tFeEIl~iA~e~-~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~   90 (646)
T KOG2310|consen   13 TIRILVATDNHLGYGEKDAVRGDDSFV-TFEEILEIAQEN-DVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV   90 (646)
T ss_pred             ceEEEEeecCccccccCCcccccchHH-HHHHHHHHHHhc-CCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence            379999999995            233 334444454444 6999999999997621       0000            


Q ss_pred             -----------------HHHHHhcccCCCCCcEEEEcCCCCChHH
Q 007415           52 -----------------EFMNYVEGRSEIPIPTYFIGDYGVGAAK   79 (604)
Q Consensus        52 -----------------~~~~~l~g~~~~p~ptyfv~GNh~~~~~   79 (604)
                                       ....|.++...+.+|++=|.|||++|..
T Consensus        91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG  135 (646)
T KOG2310|consen   91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSG  135 (646)
T ss_pred             eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCcc
Confidence                             1234667778899999999999999853

>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]

Probab=94.57  E-value=0.065  Score=53.94  Aligned_cols=69  Identities=16%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      +-||||+||+|..+.+.+ ++-. .+|----|..||+..-++...+.+.-+++-+.+.|--+-++.||||.
T Consensus        62 vtvcGDvHGqf~dl~ELf-kiGG-~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEs  130 (319)
T KOG0371|consen   62 VTVCGDVHGQFHDLIELF-KIGG-LAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHES  130 (319)
T ss_pred             eEEecCcchhHHHHHHHH-HccC-CCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHH
Confidence            789999999999998877 3322 22545567899996654443333333343344556668999999984

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.38  E-value=0.16  Score=51.03  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=48.9

Q ss_pred             CcEEEEecCCCCC----C--hhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEE
Q 007415           33 FDAVLCVGQFFPD----S--SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFW  106 (604)
Q Consensus        33 fD~vi~~GDff~~----~--~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~  106 (604)
                      -|.|+++||+|..    +  +....++..-|.-...-+.++||++||||.   ++.+...            .-+.++..
T Consensus        30 ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df---ll~~~f~------------~~~g~~~l   94 (237)
T COG2908          30 ADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF---LLGKRFA------------QEAGGMTL   94 (237)
T ss_pred             CcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHH---HHHHHHH------------hhcCceEE
Confidence            5999999999753    1  111222222222234567999999999972   3333221            01234566


Q ss_pred             cCCCCeEEEcCcEEEEEecc
Q 007415          107 LKGSGNFTLHGLSVAYLSGR  126 (604)
Q Consensus       107 Lg~~gv~~~~GlrIa~lgG~  126 (604)
                      +....+++..|.++..+=|-
T Consensus        95 ~~~~~~~~l~g~~~Ll~HGD  114 (237)
T COG2908          95 LPDPIVLDLYGKRILLAHGD  114 (237)
T ss_pred             cCcceeeeecCcEEEEEeCC
Confidence            77666778899999988885

>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]

Probab=93.22  E-value=1.4  Score=48.30  Aligned_cols=186  Identities=18%  Similarity=0.099  Sum_probs=91.8

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-Chh--hHHHHHHHhcccCCCCCcEEEEcCCCCChHH
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSE--LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK   79 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~--~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~   79 (604)
                      +.++.++||.--....  .....+...+.++|+||.+|||--. ...  .=++|...+.. ...-+|..++.||||....
T Consensus       147 ~~~~~i~GDlG~~~~~--~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp-~As~vPymv~~GNHE~d~~  223 (452)
T KOG1378|consen  147 PTRAAIFGDMGCTEPY--TSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEP-IASYVPYMVCSGNHEIDWP  223 (452)
T ss_pred             ceeEEEEccccccccc--cchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhh-hhccCceEEecccccccCC
Confidence            3578899996543221  0122333444469999999999322 111  11234444433 3355899999999996422


Q ss_pred             H---HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHH-HhhcCC---
Q 007415           80 V---LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALR-ALAEEP---  152 (604)
Q Consensus        80 ~---l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~-~l~~~~---  152 (604)
                      -   ...+. ...  +.+....+--.||+|-     +.+++..|.+||--...   ....++++. +=|+ .|++.+   
T Consensus       224 ~~~~F~~y~-~Rf--~mP~~~s~s~~~l~YS-----fd~G~vhfv~lsse~~~---~~~~~~~QY-~WL~~dL~~v~r~~  291 (452)
T KOG1378|consen  224 PQPCFVPYS-ARF--NMPGNSSESDSNLYYS-----FDVGGVHFVVLSTETYY---NFLKGTAQY-QWLERDLASVDRKK  291 (452)
T ss_pred             Ccccccccc-eee--ccCCCcCCCCCceeEE-----EeeccEEEEEEeccccc---cccccchHH-HHHHHHHHHhcccC
Confidence            0   00000 000  0000000111245542     34667788877643221   111222221 1111 122111   


Q ss_pred             CCccEEEeCCCCccccc--cccccccccCcCCCCCCc--HHHHHHHHHhCCCEEEEccCCCcccc
Q 007415          153 GIVDLFLTNEWPSGVTN--KAAASDMLVGISDSSNTD--STVSELVAEIKPRYHIAGSKGVFYAR  213 (604)
Q Consensus       153 ~~vDILLTh~wP~gi~~--~~~~~~~~~~~~~~~~Gs--~~i~~l~~~lkPrYhf~Gh~~~fyEr  213 (604)
                      .+==|++-|.|=..-..  ...     ++    ...+  ..+.+|.-+.+-...|+||.|. |||
T Consensus       292 tPWlIv~~HrP~Y~S~~~~~~r-----eG----~~~~~~~~LE~l~~~~~VDvvf~GHvH~-YER  346 (452)
T KOG1378|consen  292 TPWLIVQGHRPMYCSSNDAHYR-----EG----EFESMREGLEPLFVKYKVDVVFWGHVHR-YER  346 (452)
T ss_pred             CCeEEEEecccceecCCchhhc-----cC----cchhhHHHHHHHHHHhceeEEEecccee-hhc
Confidence            35556666654443222  111     11    1112  3799999999999999999885 577

>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

Probab=93.18  E-value=3.8  Score=51.07  Aligned_cols=205  Identities=13%  Similarity=0.060  Sum_probs=100.9

Q ss_pred             CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhH-------------HHHH
Q 007415            4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL-------------DEFM   54 (604)
Q Consensus         4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~-------------~~~~   54 (604)
                      ++||.++|+||++.                .+...++++.+++ +--++|=.||++....-..             .-..
T Consensus        42 l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~-~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i  120 (1163)
T PRK09419         42 IQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKEN-PNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMI  120 (1163)
T ss_pred             EEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhC-CCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHH
Confidence            68999999999863                3334444443333 4345555999875422000             0011


Q ss_pred             HHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC------CCCeEEE---------cC
Q 007415           55 NYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTL---------HG  117 (604)
Q Consensus        55 ~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~~---------~G  117 (604)
                      +.+   ..+.+- +++.||||-..  +.+..+-..       ..-..+|.|++.-.      ..-|++.         +|
T Consensus       121 ~~m---N~lgyD-a~~lGNHEFd~G~~~L~~~~~~-------a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~g  189 (1163)
T PRK09419        121 KAM---NALGYD-AGTLGNHEFNYGLDFLDGTIKG-------ANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQG  189 (1163)
T ss_pred             HHH---hhcCcc-EEeecccccccCHHHHHHHHhc-------CCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCCC
Confidence            111   122222 57799999642  233322111       12346888985432      2234456         89


Q ss_pred             cEEEEEecccCCCCC----C-C--CCCCHHHHHHHHHhhc--CCCCcc--EEEeCCCCccccccccccccccCcCCCCCC
Q 007415          118 LSVAYLSGRQSSEGQ----Q-F--GTYSQDDVDALRALAE--EPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNT  186 (604)
Q Consensus       118 lrIa~lgG~~~~~~~----~-~--~~~te~d~~~L~~l~~--~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~G  186 (604)
                      +|||.+|=.-+.-..    . .  ..++ +.++++++...  ...++|  |+|+|.--..-    .          ...|
T Consensus       190 vkIgiiG~~~p~~~~~~~~~~~g~~~~~-d~v~~~~~~v~~lk~~gaDvII~l~H~G~~~~----~----------~~~~  254 (1163)
T PRK09419        190 VKVGYIGFVPPQIMTWDKKNLKGKVEVK-NIVEEANKTIPEMKKGGADVIVALAHSGIESE----Y----------QSSG  254 (1163)
T ss_pred             eEEEEEecCCcchhhcchhhccCcEEEC-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCCC----C----------CCCC
Confidence            999999976432110    0 0  1121 12222222110  023566  47788643211    0          0112


Q ss_pred             -cHHHHHHHHHh-CCCEEEEccCCCcccccccccC-------CCcceeEEEEcCCCCC
Q 007415          187 -DSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNV-------DAVHVTRFLGLAPVGN  235 (604)
Q Consensus       187 -s~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~-------~~~~~TRFI~L~~~gn  235 (604)
                       ...+.+|++++ .--..+.||.|..+.-..|...       .....|-.+-.|.+|+
T Consensus       255 ~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~  312 (1163)
T PRK09419        255 AEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK  312 (1163)
T ss_pred             cchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence             22445666554 4568899999887653333211       0123455666666654

>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=92.83  E-value=0.23  Score=48.87  Aligned_cols=68  Identities=18%  Similarity=0.371  Sum_probs=49.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      -|-||||+||.|-.|.+..+.    .|  |----|..|||..-+...++.+.-++.-..+-|..+-.+-|||+.
T Consensus        47 PVTvCGDIHGQFyDL~eLFrt----gG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEs  116 (306)
T KOG0373|consen   47 PVTVCGDIHGQFYDLLELFRT----GGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHES  116 (306)
T ss_pred             CeeEeeccchhHHHHHHHHHh----cCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchh
Confidence            378999999999888765542    33  444567899998766555666666555456678888999999985

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain

Probab=92.74  E-value=1.2  Score=45.75  Aligned_cols=183  Identities=13%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             CcEEEEecCCCCCC---------------------hhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH--Hhcccc
Q 007415           33 FDAVLCVGQFFPDS---------------------SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA--ASKNSA   89 (604)
Q Consensus        33 fD~vi~~GDff~~~---------------------~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~--l~~~~~   89 (604)
                      +.-||++||.....                     .....++..||+... -.+|+-.+|||||-....+-+  +...- 
T Consensus        43 I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~~~lPQqplh~~l-  120 (257)
T cd07387          43 IVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPANHSLPQQPLHRCL-  120 (257)
T ss_pred             eEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCcccccCCCCCCCHHH-
Confidence            44699999985531                     112334556665433 468999999999832211111  00000 


Q ss_pred             ccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccc
Q 007415           90 NQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTN  169 (604)
Q Consensus        90 ~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~gi~~  169 (604)
                         |+. +. --.|+..+..-..++++|++|.+.+|..-.+-.....+ ++.++.|+.+.+  +      =|-.|..= +
T Consensus       121 ---fp~-s~-~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky~~~-~~~l~~me~~L~--w------rHlaPTaP-D  185 (257)
T cd07387         121 ---FPK-SS-NYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSL-ESRLDILERTLK--W------RHIAPTAP-D  185 (257)
T ss_pred             ---hhc-cc-ccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHhCCC-CCHHHHHHHHHH--h------cccCCCCC-C
Confidence               000 00 01355555544466899999999999753211000011 122333333211  0      12233210 0


Q ss_pred             cccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccC
Q 007415          170 KAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT  248 (604)
Q Consensus       170 ~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~  248 (604)
                      ...  ..|         ...-+-++-.--|-..|+||.+.|--+. |.+. ....+|.|++..|-.   -.-+--+++.
T Consensus       186 TL~--~yP---------~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~-~~~~-~~~~v~lv~vP~Fs~---t~~~vlvdl~  248 (257)
T cd07387         186 TLW--CYP---------FTDRDPFILEECPHVYFAGNQPKFGTKL-VEGE-EGQRVLLVCVPSFSK---TGTAVLVNLR  248 (257)
T ss_pred             ccc--ccc---------CCCCCceeecCCCCEEEeCCCcceeeeE-EEcC-CCCeEEEEEeCCcCc---CCEEEEEECC
Confidence            000  000         0001122223459999999987663332 4443 356799999999953   2334444443

PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily

>COG1408 Predicted phosphohydrolases [General function prediction only]

Probab=92.68  E-value=0.27  Score=51.20  Aligned_cols=71  Identities=8%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             CEEEEEcCCCCCHHH--HHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .||+.++|+|-..-.  ..+.+.++-... | |+|++.||++.- .......+...|.. .+.+.++|++.||||-.
T Consensus        45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~-~-DlivltGD~~~~~~~~~~~~~~~~L~~-L~~~~gv~av~GNHd~~  118 (284)
T COG1408          45 LKIVQLSDLHSLPFREEKLALLIAIANEL-P-DLIVLTGDYVDGDRPPGVAALALFLAK-LKAPLGVFAVLGNHDYG  118 (284)
T ss_pred             eEEEEeehhhhchhhHHHHHHHHHHHhcC-C-CEEEEEeeeecCCCCCCHHHHHHHHHh-hhccCCEEEEecccccc
Confidence            589999999986433  222233332233 4 999999999773 33334445566643 45789999999999743

>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate

Probab=92.23  E-value=1.1  Score=47.78  Aligned_cols=62  Identities=18%  Similarity=0.075  Sum_probs=40.0

Q ss_pred             EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEe---eccCC-CCeeEEEEEecC
Q 007415          426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFE---WLSKR-GTHANLQAVPIP  487 (604)
Q Consensus       426 ~LIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~g~-~~v~~E---~~~~~-~~H~HihvvPvp  487 (604)
                      ++|-.-.|..++.+++.+.+..+.. +++.+.++.+..+. -+.+|+   ..++. ..|-|.|++-.|
T Consensus        96 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~  163 (329)
T cd00608          96 VICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALP  163 (329)
T ss_pred             EEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCC
Confidence            5577889999999999887777664 45555555543333 245566   22222 479999987543

The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]

Probab=92.21  E-value=0.58  Score=43.94  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             CCCCEEEEEcCCCC------------CHHHHHH-HHHHHHhhcCCCcEEEEecCCCCCC--hhhHHHHHHHhcccCCCCC
Q 007415            1 MSPPRILLCGDVLG------------RLNQLFK-RVQSVNKSAGPFDAVLCVGQFFPDS--SELLDEFMNYVEGRSEIPI   65 (604)
Q Consensus         1 m~~~KILv~GDvhG------------~~~~l~~-kv~~l~~k~GpfD~vi~~GDff~~~--~~~~~~~~~~l~g~~~~p~   65 (604)
                      |+..+|+++||.|=            +++..-+ .+..+++--+|=|.|-.+|||-...  ..+...+.+.|.|.     
T Consensus         1 ~sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGr-----   75 (186)
T COG4186           1 ASMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGR-----   75 (186)
T ss_pred             CceeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCc-----
Confidence            56668999999984            2222211 2455566567999999999995432  23334455555553     


Q ss_pred             cEEEEcCCCCC
Q 007415           66 PTYFIGDYGVG   76 (604)
Q Consensus        66 ptyfv~GNh~~   76 (604)
                       ..+|+|||+-
T Consensus        76 -khlv~GNhDk   85 (186)
T COG4186          76 -KHLVPGNHDK   85 (186)
T ss_pred             -EEEeeCCCCC
Confidence             4789999973

>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=91.96  E-value=0.33  Score=48.71  Aligned_cols=67  Identities=18%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            6 ILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         6 ILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |-||||+||.|..+.+..+    ..|  |--=-|.+||+..-+....+.+.-++.=+..-|--+-.+-||||.
T Consensus        45 vtvcGDIHGQf~Dllelf~----igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEs  113 (303)
T KOG0372|consen   45 VTVCGDIHGQFYDLLELFR----IGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHES  113 (303)
T ss_pred             cEEeecccchHHHHHHHHH----hCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchh
Confidence            7899999999998876553    334  334567899997654433444444444345567778899999995

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain

Probab=91.58  E-value=0.26  Score=48.28  Aligned_cols=46  Identities=22%  Similarity=0.115  Sum_probs=28.6

Q ss_pred             CCCcEEEEecCCCCCChhhHHHHHHHhcc-------c-CC--------------CCCcEEEEcCCCCC
Q 007415           31 GPFDAVLCVGQFFPDSSELLDEFMNYVEG-------R-SE--------------IPIPTYFIGDYGVG   76 (604)
Q Consensus        31 GpfD~vi~~GDff~~~~~~~~~~~~~l~g-------~-~~--------------~p~ptyfv~GNh~~   76 (604)
                      ...|.|+++||+|+..-...++|.+++..       . ..              -.+|++.|+||||.
T Consensus        43 l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDI  110 (193)
T cd08164          43 LKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDV  110 (193)
T ss_pred             cCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccC
Confidence            35799999999997632222333332221       0 10              14889999999984

Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]

Probab=91.49  E-value=0.51  Score=47.50  Aligned_cols=67  Identities=19%  Similarity=0.293  Sum_probs=43.4

Q ss_pred             CEEEEEcCCCCCHHHHH----------------HHHHHHHhhcCCCcEEEEecCCCCC---Ch----hhHHHHHHHhccc
Q 007415            4 PRILLCGDVLGRLNQLF----------------KRVQSVNKSAGPFDAVLCVGQFFPD---SS----ELLDEFMNYVEGR   60 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~----------------~kv~~l~~k~GpfD~vi~~GDff~~---~~----~~~~~~~~~l~g~   60 (604)
                      -+.||++|+|=.++..+                +++.++-.+.+ .+.||++||++-+   ..    .....|.+++.+.
T Consensus        20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~-p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~   98 (235)
T COG1407          20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYG-PKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER   98 (235)
T ss_pred             CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcC-CCEEEEcCccccccCccccccHHHHHHHHHHhccC
Confidence            36899999996555444                55555555664 6999999998543   11    1222344444321


Q ss_pred             CCCCCcEEEEcCCCCC
Q 007415           61 SEIPIPTYFIGDYGVG   76 (604)
Q Consensus        61 ~~~p~ptyfv~GNh~~   76 (604)
                           -+.+|.||||.
T Consensus        99 -----evi~i~GNHD~  109 (235)
T COG1407          99 -----EVIIIRGNHDN  109 (235)
T ss_pred             -----cEEEEeccCCC
Confidence                 48999999985

>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family

Probab=91.29  E-value=0.41  Score=52.61  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-------------------------CCCCCcEEE
Q 007415           16 LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-------------------------SEIPIPTYF   69 (604)
Q Consensus        16 ~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~-------------------------~~~p~ptyf   69 (604)
                      ++.++..|++|+++. |||++|.+||...... .++.-+.+.|+|.                         ....+|-|.
T Consensus        84 ~~AaVqtvNal~~~~-p~df~is~GD~~nn~~~nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~  162 (492)
T TIGR03768        84 LDAAVQTVNDLHKRD-RFDFGISLGDACNSTQYNELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQ  162 (492)
T ss_pred             HHHHHHHHHHhhcCC-CceEEEeccccccchhHHHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEE
Confidence            566777788776544 9999999999876532 2344455666653                         112389999


Q ss_pred             EcCCCCC
Q 007415           70 IGDYGVG   76 (604)
Q Consensus        70 v~GNh~~   76 (604)
                      +.||||.
T Consensus       163 v~GNHD~  169 (492)
T TIGR03768       163 VLGNHDH  169 (492)
T ss_pred             eecCCcc
Confidence            9999985

This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.

>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]

Probab=90.75  E-value=0.37  Score=48.00  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             EEECCEEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEe--eccCC-CCeeEE
Q 007415          406 VSVGEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANL  481 (604)
Q Consensus       406 vs~g~~~yl-~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~Hi  481 (604)
                      +.-.+..|+ .++|.|+.+-|+|||-.+--.--..|+...+.-+.+..      ..-+  +.+|+.  -.++. -.|-|+
T Consensus        87 vg~~s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL------~~ld--glvFYNsGp~aGaSq~HkHL  158 (298)
T COG4360          87 VGDISDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVL------CGLD--GLVFYNSGPIAGASQDHKHL  158 (298)
T ss_pred             ccCCchhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHH------hccc--ceEEecCCCCcCcCCCccce
Confidence            333444564 57899999999999986432222222222111111111      1112  378887  23333 479999


Q ss_pred             EEEecCc
Q 007415          482 QAVPIPT  488 (604)
Q Consensus       482 hvvPvp~  488 (604)
                      |+||.|-
T Consensus       159 Qi~pmPf  165 (298)
T COG4360         159 QIVPMPF  165 (298)
T ss_pred             eEeeccc
Confidence            9999994

>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]

Probab=89.54  E-value=0.38  Score=51.09  Aligned_cols=206  Identities=13%  Similarity=0.173  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-----
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-----   79 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-----   79 (604)
                      =|.||||+||++..|...+......- |-.-.+.+||...-+....+-+.-+++-.+..|--++.+-||||...-     
T Consensus        60 PV~i~GDiHGq~~DLlrlf~~~g~~p-p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yG  138 (331)
T KOG0374|consen   60 PVKIVGDIHGQFGDLLRLFDLLGSFP-PDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYG  138 (331)
T ss_pred             CEEEEccCcCCHHHHHHHHHhcCCCC-CcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceee
Confidence            38999999999998886665432111 456778999985433322222223333345677778999999996421     


Q ss_pred             HHHHHhccccccCcccCCceec-CCEE-EcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc-CCC--C
Q 007415           80 VLLAASKNSANQGFKMDGFKVT-DNLF-WLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE-EPG--I  154 (604)
Q Consensus        80 ~l~~l~~~~~~~~~~~~g~ei~-~Nl~-~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~-~~~--~  154 (604)
                      ++++... .+    .....|-+ .+.+ +|.-..  .+++..+-.=||..+. -     -+.+++.++..-.. ...  -
T Consensus       139 FydE~~r-r~----~~~~~w~~F~~~f~~mp~~a--~i~~kI~CmhGGlsp~-l-----~~~~~i~~i~rp~~~~~~gll  205 (331)
T KOG0374|consen  139 FYDECKR-RY----GEIKLWKAFNDAFNCLPLAA--LIDGKILCMHGGLSPH-L-----KSLDQIRAIPRPTDSPDKGLL  205 (331)
T ss_pred             eHHHHHH-hc----chHHHHHHHHHHHhhCchhh--eecceEEEecCCCChh-h-----cChHHHhhccCCcCCCcccee
Confidence            2222210 00    00000000 0011 111001  1334333333443221 1     12344444432110 111  2


Q ss_pred             ccEEEeCCCC--ccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccC--CCcccccccccCCCcceeEEEEc
Q 007415          155 VDLFLTNEWP--SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSK--GVFYAREPYSNVDAVHVTRFLGL  230 (604)
Q Consensus       155 vDILLTh~wP--~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~--~~fyEr~Py~~~~~~~~TRFI~L  230 (604)
                      .|+|-++.=.  .|.....      .++. ...|...++++++++.=...+=||.  ...||   |... ..-+|-|-++
T Consensus       206 ~DLlWsdp~~~~~g~~~n~------Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGye---ffa~-r~lvTIFSAP  274 (331)
T KOG0374|consen  206 CDLLWSDPDDDVPGWEEND------RGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYE---FFAG-RKLVTIFSAP  274 (331)
T ss_pred             eeeeecCCCCCCCCcccCC------Ccee-eEecHHHHHHHHHHhCcceEEEcCccccccce---EecC-ceEEEEecCc
Confidence            4555333111  1111110      1111 2478999999999999999999993  23454   2232 4669999988


Q ss_pred             CCCCC
Q 007415          231 APVGN  235 (604)
Q Consensus       231 ~~~gn  235 (604)
                      .=.|.
T Consensus       275 ~Ycg~  279 (331)
T KOG0374|consen  275 NYCGE  279 (331)
T ss_pred             hhccc
Confidence            77776

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]

Probab=88.90  E-value=0.86  Score=49.45  Aligned_cols=74  Identities=22%  Similarity=0.255  Sum_probs=45.1

Q ss_pred             CCEEEEEcCCC--C---------CHHHH-----HHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-----
Q 007415            3 PPRILLCGDVL--G---------RLNQL-----FKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-----   60 (604)
Q Consensus         3 ~~KILv~GDvh--G---------~~~~l-----~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~-----   60 (604)
                      ..||++++|.|  |         .++.+     ..+.-.....-...|+++++||+|.++. ...++|.+++...     
T Consensus        48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~  127 (410)
T KOG3662|consen   48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFG  127 (410)
T ss_pred             ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhC
Confidence            46899999976  3         12221     1122222223356899999999998532 1234455544321     


Q ss_pred             CCCCCcEEEEcCCCCC
Q 007415           61 SEIPIPTYFIGDYGVG   76 (604)
Q Consensus        61 ~~~p~ptyfv~GNh~~   76 (604)
                      .+-.+++..++||||.
T Consensus       128 ~k~~~~~~~i~GNhDI  143 (410)
T KOG3662|consen  128 RKGNIKVIYIAGNHDI  143 (410)
T ss_pred             CCCCCeeEEeCCcccc
Confidence            2357899999999985

>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase

Probab=88.88  E-value=2.9  Score=48.50  Aligned_cols=113  Identities=12%  Similarity=-0.098  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCCChhhH------------HHHH
Q 007415            3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFM   54 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~------------~~~~   54 (604)
                      .++||.+.|+||++..                +...++++.+++ +--++|-.||++....-..            .-..
T Consensus         2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~   80 (626)
T TIGR01390         2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVY   80 (626)
T ss_pred             eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-CCeEEEECCCcCCCccchhhhhhccccCCCcChHH
Confidence            4689999999999743                333344443333 4568999999865421100            0011


Q ss_pred             HHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC-------CCCeEEE-----c----
Q 007415           55 NYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTL-----H----  116 (604)
Q Consensus        55 ~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~-----~----  116 (604)
                      +.+   ..+++- ..+.||||-..  +.+..+-..       ..-..+|.|++...       ...|++.     +    
T Consensus        81 ~~m---N~lgyD-a~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~aNv~~~~~~~~~~~py~I~~~~~~~~~G~~~  149 (626)
T TIGR01390        81 KAM---NLLKYD-VGNLGNHEFNYGLPFLKQAIAA-------AKFPIVNANVVDAGTGQPAFTPYLIQERSVVDTDGKPH  149 (626)
T ss_pred             HHH---hhcCcc-EEecccccccccHHHHHHHHHh-------CCCCEEEEEEEeCCCCCcccCCeEEEEEEeeccCCCcc
Confidence            112   122222 47889999542  233322111       12346888886532       1223333     2    


Q ss_pred             CcEEEEEeccc
Q 007415          117 GLSVAYLSGRQ  127 (604)
Q Consensus       117 GlrIa~lgG~~  127 (604)
                      |+||+.+|=.-
T Consensus       150 ~~kIGiIG~~~  160 (626)
T TIGR01390       150 TLKVGYIGFVP  160 (626)
T ss_pred             ceEEEEEEecC
Confidence            69999999764

2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a

>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

Probab=88.21  E-value=3.2  Score=49.19  Aligned_cols=42  Identities=19%  Similarity=0.132  Sum_probs=27.8

Q ss_pred             CCEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCC
Q 007415            3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPD   45 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~   45 (604)
                      .++||.+.|+||++..                +-..|+++.+++ +--++|-.||++..
T Consensus        39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~-~ntlllD~GD~iqG   96 (780)
T PRK09418         39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEA-KNSVLFDDGDALQG   96 (780)
T ss_pred             EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhC-CCeEEEECCCCCCC
Confidence            3689999999998632                223333333333 45799999998643

>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=88.15  E-value=0.98  Score=46.35  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007415          400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK  460 (604)
Q Consensus       400 ~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~  460 (604)
                      .+++.||-++++..+..|=-.+-|--+||||++|+.++.++++-+..++....+.|..-|.
T Consensus       212 l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd  272 (354)
T KOG2958|consen  212 LEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD  272 (354)
T ss_pred             hhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence            4678899888888888876667788899999999999999999888888777666665544

>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed

Probab=87.85  E-value=2.1  Score=49.78  Aligned_cols=110  Identities=11%  Similarity=-0.014  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHH-------------
Q 007415            3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEF-------------   53 (604)
Q Consensus         3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~-------------   53 (604)
                      .++||.+.|+||++.                .+-..++++.+++ +--++|-.||++....-  .++             
T Consensus        25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~llvD~GD~~qGsp~--~~~~~~~~~~~g~~~p  101 (649)
T PRK09420         25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-KNSVLVDNGDLIQGSPL--GDYMAAKGLKAGDVHP  101 (649)
T ss_pred             eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-CCEEEEECCCcCCCchh--hhhhhhccccCCCcch
Confidence            578999999999863                2333344443333 45689999998654221  111             


Q ss_pred             -HHHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcCC-------CCeEEE-----c--
Q 007415           54 -MNYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTL-----H--  116 (604)
Q Consensus        54 -~~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~~-----~--  116 (604)
                       .+.+   ..+++ -..+.||||-..  +.+..+-..       ..-..||.|++....       .-|++.     +  
T Consensus       102 ~i~am---N~lgy-Da~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~ANv~~~~~~~~~~~py~I~e~~v~~~~G~  170 (649)
T PRK09420        102 VYKAM---NTLDY-DVGNLGNHEFNYGLDYLKKALAG-------AKFPYVNANVIDAKTGKPLFTPYLIKEKEVKDKDGK  170 (649)
T ss_pred             HHHHH---HhcCC-cEEeccchhhhcCHHHHHHHHhc-------CCCCEEEEEEEecCCCCcccCCeEEEEEEeeccCCC
Confidence             1111   11222 267889999542  233332111       123468889874321       223333     3  


Q ss_pred             --CcEEEEEecc
Q 007415          117 --GLSVAYLSGR  126 (604)
Q Consensus       117 --GlrIa~lgG~  126 (604)
                        |+||+.+|=.
T Consensus       171 ~~~vkIGiIGl~  182 (649)
T PRK09420        171 EHTIKIGYIGFV  182 (649)
T ss_pred             ccceEEEEEEec
Confidence              5899999965

>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

Probab=87.59  E-value=2.1  Score=50.93  Aligned_cols=112  Identities=13%  Similarity=-0.027  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----------HHH---H
Q 007415            3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----------LDE---F   53 (604)
Q Consensus         3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----------~~~---~   53 (604)
                      .++||.+.|+||++.                .+-..|+++.+++ +--++|-.||++....-.          .++   .
T Consensus       115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~  193 (814)
T PRK11907        115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM  193 (814)
T ss_pred             EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-CCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence            468999999999864                2333344443333 456899999986532100          000   1


Q ss_pred             HHHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcCC-------CCeEEE-----cC--
Q 007415           54 MNYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTL-----HG--  117 (604)
Q Consensus        54 ~~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~~-----~G--  117 (604)
                      .+.+   ..+++- ..+.||||-..  +.+..+-..       ..--.||.||+....       .-|++.     +|  
T Consensus       194 i~am---N~LGyD-A~tLGNHEFDyG~d~L~~~l~~-------a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~  262 (814)
T PRK11907        194 YAAL---EALGFD-AGTLGNHEFNYGLDYLEKVIAT-------ANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKK  262 (814)
T ss_pred             HHHH---hccCCC-EEEechhhcccCHHHHHHHHHh-------CCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcc
Confidence            2222   222232 57889999642  233332111       123468889875432       223333     55  


Q ss_pred             --cEEEEEecc
Q 007415          118 --LSVAYLSGR  126 (604)
Q Consensus       118 --lrIa~lgG~  126 (604)
                        +||+.+|=.
T Consensus       263 ~~vKIGiIGlv  273 (814)
T PRK11907        263 VTLNIGITGIV  273 (814)
T ss_pred             cceEEEEEEeC
Confidence              899999965

>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional

Probab=87.24  E-value=1.1  Score=48.65  Aligned_cols=69  Identities=23%  Similarity=0.259  Sum_probs=39.3

Q ss_pred             CEEEEEecCCCCCCCeEEEEec--cccCCCCCCCHHHHHHHHHHHHHHHHHHHh--cCCceEEEeec-cC-CCCeeEEEE
Q 007415          410 EYYYCALPKGPLVEDHVLVIPV--EHVPNTISTSPECEKELGRFQNSLMMYYKN--QGKEAVFFEWL-SK-RGTHANLQA  483 (604)
Q Consensus       410 ~~~yl~l~kgpl~~GH~LIiP~--~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~--~g~~~v~~E~~-~~-~~~H~Hihv  483 (604)
                      +...++++..|+.+||+||||-  .|.+-..+  .+..      .-++.-+...  .++ -++|... +. ..-|+|+|.
T Consensus       169 s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~--~~~l------~la~~~a~~~~~p~f-rvgYNSlGA~ASvNHLHFQa  239 (403)
T PLN03103        169 SPNVVAINVSPIEYGHVLLVPRVLDCLPQRID--PDSF------LLALYMAAEANNPYF-RVGYNSLGAFATINHLHFQA  239 (403)
T ss_pred             CccEEEEeCCCCccCeEEEcCCcccCCCeEec--HHHH------HHHHHHHHhcCCCcE-EEEecCCccccCcceeeeee
Confidence            3336678999999999999964  57765443  2222      1122222222  223 3555511 22 246999999


Q ss_pred             EecC
Q 007415          484 VPIP  487 (604)
Q Consensus       484 vPvp  487 (604)
                      .-.+
T Consensus       240 ~yl~  243 (403)
T PLN03103        240 YYLA  243 (403)
T ss_pred             cccC
Confidence            8653

>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain

Probab=86.18  E-value=39  Score=33.84  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHHHHhhcCCCcEEEEecCC------C-CC-Ch---hhHHHHHHHhcccCCCCCcEEEEcCCCCChHH---
Q 007415           14 GRLNQLFKRVQSVNKSAGPFDAVLCVGQF------F-PD-SS---ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---   79 (604)
Q Consensus        14 G~~~~l~~kv~~l~~k~GpfD~vi~~GDf------f-~~-~~---~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~---   79 (604)
                      .+++.+|+.+..+-+.   .|++++=-..      . .. ..   ....+..+.|   ..+++..+-+.+||+.+..   
T Consensus        22 ~~~~~~~~~v~~~~~~---~D~~~~NlE~~~~~~~~~~~~~~~~f~~~~~~~~~L---~~~G~d~~tlaNNH~fD~G~~g   95 (239)
T cd07381          22 YDFDPLFEDVKPLLRA---ADLAIGNLETPLTDKGSPAPSKYPHFRAPPEVADAL---KAAGFDVVSLANNHTLDYGEEG   95 (239)
T ss_pred             CCchhHHHHHHHHHhc---CCEEEEEeecCccCCCCcCCCCceEecCCHHHHHHH---HHhCCCEEEcccccccccchHH
Confidence            3567888888877654   4777543221      0 00 00   0112233444   4467777778889986532   


Q ss_pred             HHHHHhccccccCcccCCceecCCEEE--cCCCCeEEEcCcEEEEEecccCC
Q 007415           80 VLLAASKNSANQGFKMDGFKVTDNLFW--LKGSGNFTLHGLSVAYLSGRQSS  129 (604)
Q Consensus        80 ~l~~l~~~~~~~~~~~~g~ei~~Nl~~--Lg~~gv~~~~GlrIa~lgG~~~~  129 (604)
                      +.+.+..-. ..|+    ..+..|...  ..+.-+++++|++|+.+|-....
T Consensus        96 l~~t~~~l~-~~~i----~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~  142 (239)
T cd07381          96 LLDTLDALD-EAGI----AHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGT  142 (239)
T ss_pred             HHHHHHHHH-HcCC----ceeECCCCHHHhcCcEEEEECCEEEEEEEEECCC
Confidence            222221000 0000    111122111  01223457899999999987653

CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal

>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]

Probab=85.16  E-value=2  Score=45.29  Aligned_cols=75  Identities=20%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCCCHH-------------------HHHHHHHHHHhhcCCCcEEEEecCC-CCCC-hhhHHHHHHHhcccC
Q 007415            3 PPRILLCGDVLGRLN-------------------QLFKRVQSVNKSAGPFDAVLCVGQF-FPDS-SELLDEFMNYVEGRS   61 (604)
Q Consensus         3 ~~KILv~GDvhG~~~-------------------~l~~kv~~l~~k~GpfD~vi~~GDf-f~~~-~~~~~~~~~~l~g~~   61 (604)
                      +.|||.+.|.|=.+.                   .-..-+.++.+.. +.|+|+..||. ++.. .++...+.+-++..+
T Consensus        53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE-~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I  131 (379)
T KOG1432|consen   53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASE-KPDLVVFTGDNIFGHSTQDAATSLMKAVAPAI  131 (379)
T ss_pred             ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhcc-CCCEEEEeCCcccccccHhHHHHHHHHhhhHh
Confidence            468999999985444                   0112233333333 47999999996 5432 233344556666667


Q ss_pred             CCCCcEEEEcCCCCChH
Q 007415           62 EIPIPTYFIGDYGVGAA   78 (604)
Q Consensus        62 ~~p~ptyfv~GNh~~~~   78 (604)
                      .-.+|--.+.||||+..
T Consensus       132 ~~~IPwA~~lGNHDdes  148 (379)
T KOG1432|consen  132 DRKIPWAAVLGNHDDES  148 (379)
T ss_pred             hcCCCeEEEeccccccc
Confidence            77899999999999753

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=84.71  E-value=1.9  Score=47.87  Aligned_cols=102  Identities=23%  Similarity=0.449  Sum_probs=60.8

Q ss_pred             CCCCCcccceeEEEeccCCCCCCchhcccCCCCCCcCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCCCC
Q 007415          231 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGG  310 (604)
Q Consensus       231 ~~~gn~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~t~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (604)
                      |.|+.++-  -||+|.|.|=+.-       .=-+=|+|||..+.     +..++|.+     ..|. |.           
T Consensus       187 ~~ys~DeF--rMy~fKir~C~R~-------~shDwteCPf~Hpg-----EkARRRDP-----Rkyh-Ys-----------  235 (528)
T KOG1595|consen  187 GIYSSDEF--RMYSFKIRRCSRP-------RSHDWTECPFAHPG-----EKARRRDP-----RKYH-YS-----------  235 (528)
T ss_pred             ccccccce--EEEeeeecccCCc-------cCCCcccCCccCCC-----cccccCCc-----cccc-cc-----------
Confidence            78877554  6999999987642       33578999997522     11122211     1111 10           


Q ss_pred             CCCCcceeeeccCCCCCCCcccccCCc----hhhhhhccccchhhhhcccCCCCCCccccCCcC
Q 007415          311 DGDKMCFKFIYSGSCPRGEKCNFRHDT----DAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQ  370 (604)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  370 (604)
                        .-+|=.|+. |.|.+|+.|+|||--    .+.+.|-.+.|-|-   |.|.+ +=|.+.|..+
T Consensus       236 --~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~e  292 (528)
T KOG1595|consen  236 --STPCPEFRK-GSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPE  292 (528)
T ss_pred             --CccCccccc-CCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChH
Confidence              014545554 789999999999974    45577777777332   44444 4455555543

>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap

Probab=84.07  E-value=49  Score=33.20  Aligned_cols=106  Identities=11%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             EEEEEcCCC-------CCHHHHHHHHHHHHhhcCCCcEEEEe------cCC--CCCC-h---hhHHHHHHHhcccCCCCC
Q 007415            5 RILLCGDVL-------GRLNQLFKRVQSVNKSAGPFDAVLCV------GQF--FPDS-S---ELLDEFMNYVEGRSEIPI   65 (604)
Q Consensus         5 KILv~GDvh-------G~~~~l~~kv~~l~~k~GpfD~vi~~------GDf--f~~~-~---~~~~~~~~~l~g~~~~p~   65 (604)
                      +|+++||+-       .+++.+|+.+..+-++   .|++++=      ++-  .... .   ....+..+.|   ..+++
T Consensus         1 ~i~~~GDi~~~~~~~~~~~~~~~~~v~~~~~~---aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l---~~~G~   74 (239)
T smart00854        1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLRA---ADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAAL---KAAGF   74 (239)
T ss_pred             CEEEEeeecccCcccccCcchHHHHHHHHHhc---CCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHH---HHhCC
Confidence            478889972       3468888888877553   4666542      111  1100 0   0112233444   45677


Q ss_pred             cEEEEcCCCCChHH---HHHHHhccccccCcccCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccC
Q 007415           66 PTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQS  128 (604)
Q Consensus        66 ptyfv~GNh~~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~  128 (604)
                      -+.-+++||+.+..   +.+.+..-.            ..|+.++|         +.-+++++|++||.+|-+..
T Consensus        75 d~~~laNNH~fD~G~~gl~~t~~~l~------------~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~  137 (239)
T smart00854       75 DVVSLANNHSLDYGEEGLLDTLAALD------------AAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYG  137 (239)
T ss_pred             CEEEeccCcccccchHHHHHHHHHHH------------HCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcC
Confidence            77778889997532   222222100            11233332         12345689999999998754

This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.

>PLN02643 ADP-glucose phosphorylase

Probab=83.89  E-value=9.2  Score=40.87  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEeec---cCC-CCeeEEEEEecC---cchHH---H
Q 007415          426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEWL---SKR-GTHANLQAVPIP---TSKAA---A  493 (604)
Q Consensus       426 ~LIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~g~-~~v~~E~~---~~~-~~H~HihvvPvp---~~~~~---~  493 (604)
                      ++|-.-+|..++.+++.+.+..+.. +++.+..+.+..+. -+.+||+.   ++. ..|-|.|++-.|   .....   .
T Consensus       110 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~  189 (336)
T PLN02643        110 VVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDG  189 (336)
T ss_pred             EEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHH
Confidence            3445568999999999887777664 45555544333333 35556622   222 479999987544   44433   3


Q ss_pred             HHHHHHH
Q 007415          494 VQDIFNL  500 (604)
Q Consensus       494 ~~~~f~~  500 (604)
                      +..||++
T Consensus       190 ~~~y~~~  196 (336)
T PLN02643        190 SKEYFEK  196 (336)
T ss_pred             HHHHHHH
Confidence            4555554

>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=83.27  E-value=6.2  Score=41.92  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=43.7

Q ss_pred             CeEEEE--eccccCCCCCCCHHHHHHHHHH-HHHHHHHHHhcCC-ceEEEee---ccCC-CCeeEEEEEecCc
Q 007415          424 DHVLVI--PVEHVPNTISTSPECEKELGRF-QNSLMMYYKNQGK-EAVFFEW---LSKR-GTHANLQAVPIPT  488 (604)
Q Consensus       424 GH~LIi--P~~H~~s~~~l~~~~~~Ei~~~-~~~L~~~~~~~g~-~~v~~E~---~~~~-~~H~HihvvPvp~  488 (604)
                      |++.||  --.|..++.+++.+...++.++ +..++++.+...+ =|.+|++   .++. ..|-|.|++-.|.
T Consensus        93 g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~  165 (338)
T COG1085          93 GKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV  165 (338)
T ss_pred             cceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence            655544  5589999999999988888865 5566666665333 3555662   2222 4799999987654

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast

Probab=80.70  E-value=4  Score=40.05  Aligned_cols=114  Identities=12%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             EEEEcCCCCC-HHHHHHHHHHHHhh---cCCCcEEEEecCCCCCCh------------hh----HHHHHHHhcccCCCCC
Q 007415            6 ILLCGDVLGR-LNQLFKRVQSVNKS---AGPFDAVLCVGQFFPDSS------------EL----LDEFMNYVEGRSEIPI   65 (604)
Q Consensus         6 ILv~GDvhG~-~~~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~------------~~----~~~~~~~l~g~~~~p~   65 (604)
                      |++++|+|-. =...++.+..+-..   ..+.+++|++|+|.....            ..    ...+..++.. ....+
T Consensus         1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~   79 (209)
T PF04042_consen    1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES-ILPST   79 (209)
T ss_dssp             EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC-CHCCS
T ss_pred             CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh-ccccc
Confidence            5677777654 22234444444432   236899999999976411            01    1112223321 22358


Q ss_pred             cEEEEcCCCCChHHHHHHHhccccccCcccC-CceecC--CEEEcCCCCeEEEcCcEEEEEecc
Q 007415           66 PTYFIGDYGVGAAKVLLAASKNSANQGFKMD-GFKVTD--NLFWLKGSGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        66 ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~-g~ei~~--Nl~~Lg~~gv~~~~GlrIa~lgG~  126 (604)
                      .+++|+|++|-...  .-++...-    ... -..+..  ++.++..=-.+.++|++|+..+|-
T Consensus        80 ~vvlvPg~~D~~~~--~~lPq~pl----~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d  137 (209)
T PF04042_consen   80 QVVLVPGPNDPTSS--PVLPQPPL----HSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGD  137 (209)
T ss_dssp             EEEEE--TTCTT-S---SCSB--------TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSH
T ss_pred             EEEEeCCCcccccc--CCCCCCCC----CHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCc
Confidence            89999998874332  11111000    000 001111  266666556678999999998875

In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.

>COG1692 Calcineurin-like phosphoesterase [General function prediction only]

Probab=80.60  E-value=11  Score=38.10  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      ||||++||+-|+  .+.+.+.+..+-+|- ..|+||+=|..    |+....   -..+++    +.++. +++.|||-=+
T Consensus         1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k---~y~~l~----~~G~d-viT~GNH~wd   71 (266)
T COG1692           1 MRILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEK---IYKELL----EAGAD-VITLGNHTWD   71 (266)
T ss_pred             CeEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHH---HHHHHH----HhCCC-EEeccccccc
Confidence            799999999997  456677777776665 58999999886    333322   233343    23333 5678888533


Q ss_pred             -HHHHHHHhccccccCcccCCceec----CCEEEcCCC-CeEEEcCcEEEEEe
Q 007415           78 -AKVLLAASKNSANQGFKMDGFKVT----DNLFWLKGS-GNFTLHGLSVAYLS  124 (604)
Q Consensus        78 -~~~l~~l~~~~~~~~~~~~g~ei~----~Nl~~Lg~~-gv~~~~GlrIa~lg  124 (604)
                       .++++-+.+..         .-+.    |+. ..|++ ++++++|.+|+.+.
T Consensus        72 ~~ei~~~i~~~~---------~ilRP~N~p~~-~~G~G~~~f~~ng~ki~V~N  114 (266)
T COG1692          72 QKEILDFIDNAD---------RILRPANYPDG-TPGKGSRIFKINGKKLAVIN  114 (266)
T ss_pred             chHHHHHhhccc---------ceeccCCCCCC-CCcceEEEEEeCCcEEEEEE
Confidence             33444443110         0011    222 34443 45577887777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	604
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-12
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-09
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	1e-09
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	9e-09
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	4e-04
3ano_A	218	AP-4-A phosphorylase; diadenosine polyphosphate, H	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	1e-05

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 314 KMCFKFIYSGSCPRGEKCNFRHDTDA------REQCLRGVCLDFIIKGKCEKGPECSYKH 367
           ++C  +  SG C  G KC F H            +    +C  F ++G+C  G  C + H
Sbjct: 13  ELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

Query: 368 SLQND 372
           +   D
Sbjct: 73  NPTED 77

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 301 SQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKG 360
                 H  G+   +C  ++  G C +G++C F H+ D  +      C  +   G+C   
Sbjct: 4   HHHHHSHMSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMTKM---SECYFYSKFGEC-SN 58

Query: 361 PECSYKH 367
            EC + H
Sbjct: 59  KECPFLH 65

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 309 GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHS 368
            G+   +C  ++  G C +G++C F H+ D  +      C  +   G+C    EC + H 
Sbjct: 6   SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMTKM---PECYFYSKFGEC-SNKECPFLHI 60

Query: 369 LQNDDSQ 375
                 +
Sbjct: 61  DPESKIK 67

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 52.0 bits (124), Expect = 9e-09
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 314 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDD 373
           ++C KF  +G C R E C + H            C  +   G C  G +C + H    ++
Sbjct: 14  ELC-KFYITGFCARAENCPYMHGDF--------PCKLYHTTGNCINGDDCMFSHDPLTEE 64

Query: 374 SQ 375
           ++
Sbjct: 65  TR 66

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 312 GDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECS 364
           GD  C  +  +G+C  G+ C F HD    E       LD ++    E G E  
Sbjct: 35  GDFPCKLYHTTGNCINGDDCMFSHDPLTEETR---ELLDKMLADDAEAGAEDE 84

>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 387 RSKECWFC-LSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECE 445
            S    F  +   S E  L+V+ G+  Y  L   P    H++V+P   V      +    
Sbjct: 67  ASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLES 126

Query: 446 KELGRFQNSLMMYYK------------NQGKEA 466
            EL  F    +   K            N G  A
Sbjct: 127 AELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSA 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 67/479 (13%), Positives = 126/479 (26%), Gaps = 147/479 (30%)

Query: 66  PTYFIGDYGV-GAAK-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYL 123
           P   +   GV G+ K  +      S     KMD FK+    FWL    N       +  L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKI----FWLN-LKNCNSPETVLEML 202

Query: 124 ---------SGRQSSEGQQFGTYSQDDV-DALRALAEEPGIVD--LFLTNEWPSGVTNKA 171
                    +    S+           +   LR L +     +  L L N   +   N  
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-- 260

Query: 172 AASD----MLVGISDSSNTDSTVSELVAEIKPRYHIAG-----SKGVFYAREPYSNVDAV 222
            A +    +L+       TD   +     I   +H         K +             
Sbjct: 261 -AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------------ 307

Query: 223 HVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEA 282
              ++L   P            L P    T +   +S+                      
Sbjct: 308 --LKYLDCRP----------QDL-PREVLTTNPRRLSI---------------------I 333

Query: 283 AKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSC-PRGEKCN-FRHDT--- 337
           A+   D ++    W++ V+  +         +     +         ++ + F       
Sbjct: 334 AESIRDGLATWDNWKH-VNCDKLTT----IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 338 ---------DAREQCLRGVCLDFIIKGKCEKGP-ECSYK-HSLQ------NDDSQRTHRS 380
                    D  +  +  V          EK P E +    S+        ++    HRS
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 381 --ENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTI 438
             ++ +  ++ +    L  P ++         Y+Y  +        H       H+ N  
Sbjct: 449 IVDHYNIPKTFDSDD-LIPPYLDQ--------YFYSHIG-------H-------HLKNI- 484

Query: 439 STSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDI 497
                   E         M + +       F +L ++  H +  A     S    +Q +
Sbjct: 485 --------EHPERMTLFRMVFLD-------FRFLEQKIRHDST-AWNASGSILNTLQQL 527

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELG 449
              F      ++  ++    E  +  + + P+V  HVLV P+  V       P+   +L 
Sbjct: 2   SFRFG--QHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLF 59

Query: 450 RF----QNSLMMYYK--------NQGKEA 466
           +        +  ++           G EA
Sbjct: 60  QTTQRVGTVVEKHFHGTSLTFSMQDGPEA 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	604
3rl5_A	296	Metallophosphoesterase mpped2; alpha-beta fold, me	99.76
1uf3_A	228	Hypothetical protein TT1561; metallo-dependent pho	99.7
2yvt_A	260	Hypothetical protein AQ_1956; structural genomics,	99.7
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	99.66
3o0m_A	149	HIT family protein; ssgcid, NIH, niaid, SBRI, UW,	99.66
3lb5_A	161	HIT-like protein involved in cell-cycle regulatio;	99.65
3imi_A	147	HIT family protein; structural genomics, infectiou	99.65
1y23_A	145	HIT, histidine triad protein; HIT protein, PKCI-1,	99.65
3oj7_A	117	Putative histidine triad family protein; hydrolase	99.63
3l7x_A	173	SMU.412C, putative HIT-like protein involved in ce	99.63
4egu_A	119	Histidine triad (HIT) protein; structural genomics	99.62
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	99.62
3r6f_A	135	HIT family protein; structural genomics, seattle s	99.62
2eo4_A	149	150AA long hypothetical histidine triad nucleotid	99.61
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	99.6
3ano_A	218	AP-4-A phosphorylase; diadenosine polyphosphate, H	99.6
2oik_A	154	Histidine triad (HIT) protein; HIT-like fold, stru	99.6
3ksv_A	149	Uncharacterized protein; HIT family, structural ge	99.59
1xqu_A	147	HIT family hydrolase; protein STRU initiative, PSI	99.58
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	99.43
3d03_A	274	Phosphohydrolase; glycerophosphodiesterase, metall	99.37
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.33
3ohe_A	137	Histidine triad (HIT) protein; structural genomics	99.29
3ib7_A	330	ICC protein; metallophosphoesterase, alpha-beta fo	99.29
3i24_A	149	HIT family hydrolase; structural genomics, PSI-2,	99.28
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	99.13
3ck2_A	176	Conserved uncharacterized protein (predicted phosp	99.11
1gup_A	348	Galactose-1-phosphate uridylyltransferase; nucleot	99.1
3nrd_A	135	Histidine triad (HIT) protein; structural genomics	99.05
1s3l_A	190	Hypothetical protein MJ0936; phosphodiesterase, nu	99.03
1nnw_A	252	Hypothetical protein; structural genomics, PSI, pr	99.01
3i4s_A	149	Histidine triad protein; hydrolase, phosphatase, H	98.93
2a22_A	215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	98.92
3rqz_A	246	Metallophosphoesterase; PSI-biology, midwest cente	98.91
1z2w_A	192	Vacuolar protein sorting 29; VPS29, retromer, phos	98.89
3qfm_A	270	SAPH, putative uncharacterized protein; sandwich f	98.88
2nxf_A	322	Putative dimetal phosphatase; dinuclear metal cent	98.8
1ute_A	313	Protein (II purple acid phosphatase); tartrate res	98.77
2xmo_A	443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	98.76
3av0_A	386	DNA double-strand break repair protein MRE11; DNA	98.73
2q8u_A	336	Exonuclease, putative; structural genomics, joint	98.72
1xm7_A	195	Hypothetical protein AQ_1665; structural genomics,	98.68
2kkn_A	178	Uncharacterized protein; protein phosphatase 2A ho	98.67
3tho_B	379	Exonuclease, putative; adenosine triphosphate, bac	98.64
1ii7_A	333	MRE11 nuclease; RAD50, DNA double-strand break rep	98.53
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	98.47
1su1_A	208	Hypothetical protein YFCE; structural genomics, ph	98.31
1xzw_A	426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	98.28
1hp1_A	516	5'-nucleotidase; metallophosphatase, dinuclear, me	98.22
2qfp_A	424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	98.15
3tgh_A	342	Glideosome-associated protein 50; phosphatase fold	98.06
3qfk_A	527	Uncharacterized protein; structural genomics, cent	97.99
1g5b_A	221	Serine/threonine protein phosphatase; bacteriophag	97.93
2qjc_A	262	Diadenosine tetraphosphatase, putative; putative d	97.81
2dfj_A	280	Diadenosinetetraphosphatase; helices and strands m	97.78
4fbk_A	472	DNA repair and telomere maintenance protein NBS1,	97.7
4fbw_A	417	DNA repair protein RAD32; DNA double-strand break	97.68
3t1i_A	431	Double-strand break repair protein MRE11A; DNA rep	97.63
3ive_A	509	Nucleotidase; structural genomics, PSI-2, protein	97.63
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	97.59
3h63_A	315	Serine/threonine-protein phosphatase 5; metalloenz	97.52
3icf_A	335	PPT, serine/threonine-protein phosphatase T; IRO m	97.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.45
2ie4_C	309	PP2A-alpha;, serine/threonine-protein phosphatase	97.44
2z72_A	342	Protein-tyrosine-phosphatase; cold-active enzyme,	97.42
1fjm_A	330	Protein serine/threonine phosphatase-1 (alpha ISO	97.39
3e7a_A	299	PP-1A, serine/threonine-protein phosphatase PP1-al	97.29
1aui_A	521	Calcineurin, serine/threonine phosphatase 2B; hydr	97.22
3ll8_A	357	Serine/threonine-protein phosphatase 2B catalytic	97.15
2wdc_A	562	SOXB, sulfur oxidation protein SOXB; sulfur-sulfur	96.88
3c9f_A	557	5'-nucleotidase; 2',3'-cyclic phosphodiesterase, p	96.82
4h2g_A	546	5'-nucleotidase; dimer, hydrolase, phosphatase, ex	96.6
2z1a_A	552	5'-nucleotidase; metal-binding, nucleotide-binding	96.11
1t71_A	281	Phosphatase, conserved HYPO; crystal, X-RAY crysta	96.05
3ztv_A	579	NAD nucleotidase, NADN; hydrolase, NAD pyrophospha	95.96
3gve_A	341	YFKN protein; alpha-beta-BETA-alpha sandwich, stru	95.56
3jyf_A	339	2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- n	95.18
4h1s_A	530	5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo	94.39
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	93.38
1t70_A	255	Phosphatase; crystal, X-RAY crystallography, struc	92.72
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	92.49
2z06_A	252	Putative uncharacterized protein TTHA0625; metal b	92.37
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	91.77
1gup_A	348	Galactose-1-phosphate uridylyltransferase; nucleot	87.86
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	81.53

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*

Probab=99.76  E-value=3.3e-18  Score=175.98  Aligned_cols=204  Identities=13%  Similarity=0.099  Sum_probs=130.8

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCC-CcEEEEcCCCCCh--H
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIP-IPTYFIGDYGVGA--A   78 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p-~ptyfv~GNh~~~--~   78 (604)
                      .|||++++|+|++...+         +..+.|+||++||++.... .+...+.++|.   +++ .++|+|.||||..  .
T Consensus        59 ~mri~~iSD~H~~~~~l---------~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~---~l~~~~v~~V~GNHD~~~d~  126 (296)
T 3rl5_A           59 HTRFVCISDTRSRTDGI---------QMPYGDILLHTGDFTELGLPSEVKKFNDWLG---NLPYEYKIVIAGNHELTFDK  126 (296)
T ss_dssp             EEEEEEEBCCTTCCTTC---------CCCSCSEEEECSCCSSSCCHHHHHHHHHHHH---TSCCSEEEECCCTTCGGGCH
T ss_pred             CeEEEEEeeCCCCcchh---------ccCCCCEEEECCcccCCCCHHHHHHHHHHHH---hCCCCeEEEEcCCcccccch
Confidence            48999999999987532         1125799999999976532 22334556664   333 4589999999963  2


Q ss_pred             HHHHHHhccccc-------cCc--ccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHH-HHh
Q 007415           79 KVLLAASKNSAN-------QGF--KMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDAL-RAL  148 (604)
Q Consensus        79 ~~l~~l~~~~~~-------~~~--~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L-~~l  148 (604)
                      .+++.+......       ...  ..+...+..+++||. .++++++|++|+|.+++   +..+.+.|++++.+.+ ...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~~~~~i~Gl~i~Gsp~t---P~~~~~~f~~~~~~~~~~~~  202 (296)
T 3rl5_A          127 EFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQ-DSEVTVKGFRIYGAPWT---PWFNGWGFNLPRGQSLLDKW  202 (296)
T ss_dssp             HHHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECS-SEEEEETTEEEEEECCB---CC--CCTTBCCTTHHHHHHH
T ss_pred             hhhhhhhcccccccccccccccchhhhHhhhcCCeEEec-CCcEEECCEEEEEecCC---CCCCCcCCCcchHHHHHHHH
Confidence            344433110000       000  000122346789999 47778999999986664   2223344433322222 222


Q ss_pred             hcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHH-HHhCCCEEEEccCCCcccccccccCCCcceeEE
Q 007415          149 AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV-AEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRF  227 (604)
Q Consensus       149 ~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~-~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRF  227 (604)
                      .....++||||||.+|.++.+....    .   ..+.|+..+.+++ ++.+|+||++||.|..|...      ....|.|
T Consensus       203 ~~ip~~~dILvTH~PP~g~~D~~~~----~---~~~~G~~~L~~~i~~~~~p~l~v~GH~H~~~~~~------~~g~t~v  269 (296)
T 3rl5_A          203 NLIPEGTDILMTHGPPLGFRDWVPK----E---LQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGTM------TDGYTTY  269 (296)
T ss_dssp             TTSCTTCSEEEESSCBTTSSCEEGG----G---TEECSBHHHHHHHHHTTCCSEEEECSCGGGCEEE------ECSSCEE
T ss_pred             hhCCCCCeEEEECCCcccccccccc----c---cCcCChHHHHHHHHHhcCCCEEEECCccCCCceE------EECCEEE
Confidence            2235689999999999999664310    0   1368999999998 69999999999988654321      2446999


Q ss_pred             EEcCCCCC
Q 007415          228 LGLAPVGN  235 (604)
Q Consensus       228 I~L~~~gn  235 (604)
                      ||.|.++.
T Consensus       270 vNpGs~~~  277 (296)
T 3rl5_A          270 INASTCTV  277 (296)
T ss_dssp             EECBCSCT
T ss_pred             EECCcCCc
Confidence            99999986

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6

Probab=99.70  E-value=1.3e-16  Score=156.40  Aligned_cols=193  Identities=17%  Similarity=0.169  Sum_probs=122.3

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA   83 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~   83 (604)
                      |||+++||+|++...+-+.++.+.+ . ++|+||++||++..... .+++.+++....+.++|+|+|+||||....  +.
T Consensus         6 mri~~iSD~H~~~~~~~~~~~~~~~-~-~~D~vi~~GDl~~~~~~-~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~--~~   80 (228)
T 1uf3_A            6 RYILATSNPMGDLEALEKFVKLAPD-T-GADAIALIGNLMPKAAK-SRDYAAFFRILSEAHLPTAYVPGPQDAPIW--EY   80 (228)
T ss_dssp             CEEEEEECCTTCHHHHHHHHTHHHH-H-TCSEEEEESCSSCTTCC-HHHHHHHHHHHGGGCSCEEEECCTTSCSHH--HH
T ss_pred             EEEEEEeeccCCHHHHHHHHHHHhh-c-CCCEEEECCCCCCCCCC-HHHHHHHHHHHHhcCCcEEEECCCCCchhH--HH
Confidence            7999999999998765444444333 2 47999999999765311 122223332224467899999999997542  22


Q ss_pred             HhccccccCcccCCceecCCEEEcCCCCeEEEc-CcEEEEEecccCCCCCCCCCCCHHHH--------HHHH-HhhcCCC
Q 007415           84 ASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH-GLSVAYLSGRQSSEGQQFGTYSQDDV--------DALR-ALAEEPG  153 (604)
Q Consensus        84 l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~-GlrIa~lgG~~~~~~~~~~~~te~d~--------~~L~-~l~~~~~  153 (604)
                      +... .      ....+.+++.+|. ...+++. +++|++++|....+.    .++++++        ..+. .+.....
T Consensus        81 ~~~~-~------~~~~~~~~~~~l~-~~~~~~~~~~~i~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~  148 (228)
T 1uf3_A           81 LREA-A------NVELVHPEMRNVH-ETFTFWRGPYLVAGVGGEIADEG----EPEEHEALRYPAWVAEYRLKALWELKD  148 (228)
T ss_dssp             HHHH-H------HHHHHCTTEEECB-TSEEEETTTEEEEEECSEEESSS----CCBSSSSCEEEHHHHHHHHGGGGGSCS
T ss_pred             HHhh-h------hhhccCcceEEcc-cceEeeCCCcEEecCCCCcCCCC----ccChhhcccchhhhHHHHHHHHHhCCC
Confidence            2110 0      0011235667776 3566777 999999998753321    1222211        1111 1222224


Q ss_pred             CccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCC
Q 007415          154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~  233 (604)
                      ..+||+||.+|.+.    ..         ...|+..+.++++..+|.++++||.|....        ....|++||.|.+
T Consensus       149 ~~~il~~H~p~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~--------~~~~~~~in~Gs~  207 (228)
T 1uf3_A          149 YPKIFLFHTMPYHK----GL---------NEQGSHEVAHLIKTHNPLLVLVAGKGQKHE--------MLGASWVVVPGDL  207 (228)
T ss_dssp             CCEEEEESSCBCBT----TT---------BTTSBHHHHHHHHHHCCSEEEECCSSCEEE--------EETTEEEEECCBG
T ss_pred             CCeEEEEccCcccC----Cc---------cccCHHHHHHHHHHhCCCEEEEcccccCcc--------ccCCceEEEeccc
Confidence            58999999999875    10         246889999999999999999999883221        1235899999998


Q ss_pred             C
Q 007415          234 G  234 (604)
Q Consensus       234 g  234 (604)
                      +
T Consensus       208 ~  208 (228)
T 1uf3_A          208 S  208 (228)
T ss_dssp             G
T ss_pred             C
Confidence            6

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6

Probab=99.70  E-value=6.8e-16  Score=154.93  Aligned_cols=204  Identities=14%  Similarity=0.097  Sum_probs=128.8

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhH-------------------------HHHHHHh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL-------------------------DEFMNYV   57 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~-------------------------~~~~~~l   57 (604)
                      .|||++++|+|++...+.+.++.++..  +.|+||++||++.......                         +.+.+++
T Consensus         5 ~mri~~iSDlH~~~~~~~~~l~~~~~~--~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l   82 (260)
T 2yvt_A            5 PRKVLAIKNFKERFDLLPKLKGVIAEK--QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFF   82 (260)
T ss_dssp             CCEEEEEECCTTCGGGHHHHHHHHHHH--CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeecCCChHHHHHHHHHHHhc--CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHH
Confidence            589999999999987665555555433  4799999999987532200                         2234444


Q ss_pred             cccCCCCCcEEEEcCCCCChHHH--HHHHhccccccCcccCCceecCCEEEcCCCCe-EEEcCcEEEEEecccCCCCCCC
Q 007415           58 EGRSEIPIPTYFIGDYGVGAAKV--LLAASKNSANQGFKMDGFKVTDNLFWLKGSGN-FTLHGLSVAYLSGRQSSEGQQF  134 (604)
Q Consensus        58 ~g~~~~p~ptyfv~GNh~~~~~~--l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv-~~~~GlrIa~lgG~~~~~~~~~  134 (604)
                      ....+.++|+|+|+||||.....  .+.+..         .+  +.+|+.+|.. .. ++++|++|+++|++...+.-+.
T Consensus        83 ~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~~---------~~--~~~~~~~l~~-~~~~~~~~~~i~g~~~~~~~~~~~~  150 (260)
T 2yvt_A           83 REIGELGVKTFVVPGKNDAPLKIFLRAAYEA---------ET--AYPNIRVLHE-GFAGWRGEFEVIGFGGLLTEHEFEE  150 (260)
T ss_dssp             HHHHTTCSEEEEECCTTSCCHHHHHHHHHHT---------TT--TCTTEEECSS-EEEEETTTEEEEEECSEEESSCCBS
T ss_pred             HHHHhcCCcEEEEcCCCCchhhhhHHHHhhh---------cc--CCcceEEecC-cceEEECCEEEEecCCCcCCCCcCH
Confidence            43345578999999999975322  122321         11  2467788864 44 6789999999998754321100


Q ss_pred             CCCC----HHHHHHHHHhhcCCCCccEEEeCCCCccc-cccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 007415          135 GTYS----QDDVDALRALAEEPGIVDLFLTNEWPSGV-TNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV  209 (604)
Q Consensus       135 ~~~t----e~d~~~L~~l~~~~~~vDILLTh~wP~gi-~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~  209 (604)
                      ....    -.....|..+.......+||+||.+|.+. .+..     +..  ....|+..+.+++++.+|.++++||.|.
T Consensus       151 ~~~~~~~~~~~~~~l~~l~~~~~~~~Il~~H~pp~~~~~d~~-----~~~--~~~~~~~~l~~~~~~~~~~~vl~GH~H~  223 (260)
T 2yvt_A          151 DFVLKYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVDRT-----PED--PKHHGSAVVNTIIKSLNPEVAIVGHVGK  223 (260)
T ss_dssp             SSSCEEEHHHHHHHGGGGGGSCCCEEEEEESSCCSCSSTTCB-----TTB--SCCCSCHHHHHHHHHHCCSEEEECSSCC
T ss_pred             HHHhhcchhhHHHHHHHHHhcCCCCEEEEECCCccccccccC-----ccc--ccccCcHHHHHHHHHhCCCEEEECCccC
Confidence            1111    00002232222223457899999999875 2211     000  1367999999999999999999999883


Q ss_pred             cccccccccCCCcceeEEEEcCCCCC
Q 007415          210 FYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       210 fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      ...        ....|++||.|.++.
T Consensus       224 ~~~--------~~~~~~~in~Gs~~~  241 (260)
T 2yvt_A          224 GHE--------LVGNTIVVNPGEFEE  241 (260)
T ss_dssp             EEE--------EETTEEEEECCBGGG
T ss_pred             CcE--------EeCCEEEEeCCCCCC
Confidence            211        123588999999874

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*

Probab=99.66  E-value=6.9e-17  Score=144.62  Aligned_cols=99  Identities=18%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hcC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQG  463 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~g  463 (604)
                      ++|.||.+..+.....||+++++++++++..|.++||+||||++|++++.+++++++.++..+.+.+++..+     +.|
T Consensus         3 ~~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g   82 (119)
T 3n1s_A            3 EETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG   82 (119)
T ss_dssp             CCCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             CCChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            579999875433335689999999999999999999999999999999999999976666655544444433     456


Q ss_pred             CceEEEe--eccCCCCeeEEEEEecC
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPIP  487 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPvp  487 (604)
                      ++++++.  .+++.+.|+|+|+||+.
T Consensus        83 ~ni~~n~g~~agq~V~HlH~Hiipr~  108 (119)
T 3n1s_A           83 YRLIMNTNRHGGQEVYHIHMHLLGGR  108 (119)
T ss_dssp             EEEEEEEHHHHTCCSSSCCEEEEESS
T ss_pred             eEEEEeCCCCcCCCcCEEEEEEeCCc
Confidence            7777766  34455789999999963

>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}

Probab=99.66  E-value=1.2e-16  Score=148.61  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=82.6

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-----
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-----  462 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~-----  462 (604)
                      +.+|+||.+..+.....||+++++++++++..|..+||+||||++|+.++.+++++++.+|....+.+.+.++..     
T Consensus         4 m~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~   83 (149)
T 3o0m_A            4 SMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHAD   83 (149)
T ss_dssp             TTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred             CCCCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            678999988644334578999999999999999999999999999999999999999999999888887776553     


Q ss_pred             CCceEEEe-e-ccCCCCeeEEEEEecCcc
Q 007415          463 GKEAVFFE-W-LSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       463 g~~~v~~E-~-~~~~~~H~HihvvPvp~~  489 (604)
                      |++++++. . +++...|+|+|+||+-..
T Consensus        84 ~~ni~~n~g~~aGq~v~HlHiHiiPR~~~  112 (149)
T 3o0m_A           84 GNNIAINDGKAAFQTVFHIHLHVVPRRNG  112 (149)
T ss_dssp             EEEEECCCSGGGTCCSSSCCEEEEEECTT
T ss_pred             ceEEEEecCCCCCCccceEEEEEECCccC
Confidence            44454443 2 334468999999997543

>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}

Probab=99.65  E-value=1.7e-16  Score=149.56  Aligned_cols=102  Identities=14%  Similarity=0.124  Sum_probs=83.9

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----HHhcC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~----~~~~g  463 (604)
                      .++|+||.+..+.....||++++++++++|..|.++||+||||++|+.++.+|+++++.+|....+.+.+.    +...|
T Consensus        27 ~~~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g  106 (161)
T 3lb5_A           27 DNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADG  106 (161)
T ss_dssp             CTTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             CCCCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46899999865444467899999999999999999999999999999999999999999888776655554    45667


Q ss_pred             CceEEEe--eccCCCCeeEEEEEecCcc
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPvp~~  489 (604)
                      ++++++.  .+++...|+|+|+||+...
T Consensus       107 ~ni~~n~g~~aGq~V~HlHiHiiPR~~~  134 (161)
T 3lb5_A          107 ITVMQFNEAASQQTVYHLHFHIIPRMEG  134 (161)
T ss_dssp             EEEEEEESGGGTCCSCSCCEEEEEECTT
T ss_pred             EEEEEecCcccCCCCCEEEEEEEcccCC
Confidence            7877776  3344468999999998554

>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1

Probab=99.65  E-value=1.1e-16  Score=148.66  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=83.1

Q ss_pred             CCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----HHhc
Q 007415          387 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQ  462 (604)
Q Consensus       387 ~~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~----~~~~  462 (604)
                      .+++|+||.+..+.....||+++++++++++..|..|||+||||++|+.++.+|+++++.+|....+.+.+.    +...
T Consensus         7 ~m~~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~   86 (147)
T 3imi_A            7 TADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPV   86 (147)
T ss_dssp             CGGGCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCS
T ss_pred             ccCCCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            467899999864433356899999999999999999999999999999999999999999988776655554    4456


Q ss_pred             CCceEEEe--eccCCCCeeEEEEEecCc
Q 007415          463 GKEAVFFE--WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       463 g~~~v~~E--~~~~~~~H~HihvvPvp~  488 (604)
                      |++++++.  .+++...|+|+|+||+..
T Consensus        87 ~~ni~~n~g~~aGq~v~HlHiHiiPR~~  114 (147)
T 3imi_A           87 GFNLLNNNGEKAGQTVFHFHLHLIPRYG  114 (147)
T ss_dssp             EEEEEEEESGGGTCCSSSCCEEEEEECS
T ss_pred             CEEEEEeCCcccCCCcCEEEEEEeCCcc
Confidence            77777776  334447899999999865

>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1

Probab=99.65  E-value=8e-17  Score=149.01  Aligned_cols=102  Identities=18%  Similarity=0.192  Sum_probs=80.8

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHH----HHHHhcC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLM----MYYKNQG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~----~~~~~~g  463 (604)
                      +++|+||.+..+.....||++++++++++++.|..+||+||||++|++++.+|+++++.+|....+.+.    +.+...|
T Consensus         4 ~~~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~   83 (145)
T 1y23_A            4 AENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIG   83 (145)
T ss_dssp             -CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSE
T ss_pred             CCCCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            457999987533223468899999999999999999999999999999999999999888876555444    4455567


Q ss_pred             CceEEEe--eccCCCCeeEEEEEecCcc
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPvp~~  489 (604)
                      ++++++.  .+++...|+|+|+||+...
T Consensus        84 ~ni~~n~g~~~g~~v~HlH~HiiPr~~~  111 (145)
T 1y23_A           84 LNTLNNNGEKAGQSVFHYHMHIIPRYGK  111 (145)
T ss_dssp             EEEEEEESGGGTCCSSSCCEEEEEECST
T ss_pred             EEEEEcCCcCCCCCcCEEEEEEEccccC
Confidence            7887776  2334468999999997643

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*

Probab=99.63  E-value=1.4e-16  Score=142.15  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             CCC-CcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---cC
Q 007415          388 SKE-CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN---QG  463 (604)
Q Consensus       388 ~~~-C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~---~g  463 (604)
                      +++ |+||.+..+.....||+++++++++++..|..+||+||||++|++++.+|+++++.++..+.+.++++.+.   .|
T Consensus         5 m~~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~g   84 (117)
T 3oj7_A            5 MADSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECPEG   84 (117)
T ss_dssp             ----CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCCcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            445 99999854433467999999999999999999999999999999999999988777766666555544442   36


Q ss_pred             CceEEEe-e-ccCCCCeeEEEEEec
Q 007415          464 KEAVFFE-W-LSKRGTHANLQAVPI  486 (604)
Q Consensus       464 ~~~v~~E-~-~~~~~~H~HihvvPv  486 (604)
                      ++++++. . +++...|+|+|+||+
T Consensus        85 ~ni~~n~g~~agq~v~H~H~Hiipr  109 (117)
T 3oj7_A           85 YRVVNNIGEDAGQTVKHIHFHILGG  109 (117)
T ss_dssp             EEEECCCSTTTTCCSSSCCEEEEES
T ss_pred             eEEEEcCCCCCCeeeeEEEEEEeCC
Confidence            6666554 2 333468999999996

>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}

Probab=99.63  E-value=2.3e-16  Score=150.22  Aligned_cols=102  Identities=22%  Similarity=0.202  Sum_probs=82.8

Q ss_pred             CCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHH----HHHhc
Q 007415          387 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMM----YYKNQ  462 (604)
Q Consensus       387 ~~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~----~~~~~  462 (604)
                      .+++|+||.+..+.....||++++++++++|..|..+||+||||++|+.++.+|+++++.+|....+.+.+    .+.+.
T Consensus        34 ~m~~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~  113 (173)
T 3l7x_A           34 SMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKAD  113 (173)
T ss_dssp             CCTTCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCS
T ss_pred             CCCCCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46799999986443335689999999999999999999999999999999999999999888876555554    45566


Q ss_pred             CCceEEEe--eccCCCCeeEEEEEecCc
Q 007415          463 GKEAVFFE--WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       463 g~~~v~~E--~~~~~~~H~HihvvPvp~  488 (604)
                      |++++++.  .+++...|+|+|+||+-.
T Consensus       114 g~ni~~n~g~~aGq~V~HlHiHiIPR~~  141 (173)
T 3l7x_A          114 GLNIINNNEETAGQTVFHAHVHLVPRFA  141 (173)
T ss_dssp             EEEEEECCSGGGTCCSCSCCEEEEEECC
T ss_pred             CEEEEEecCcccCCCcCEEEEEEEeccc
Confidence            77877765  334447899999999855

>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}

Probab=99.62  E-value=4.5e-16  Score=139.20  Aligned_cols=99  Identities=13%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHH---HHHHH--HHhcC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQN---SLMMY--YKNQG  463 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~---~L~~~--~~~~g  463 (604)
                      .+|+||.+..+.....||++++++++++|..|.++||+||||++|++++.+|+++++.++..+.+   .+.+.  +.+.|
T Consensus         4 ~~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~   83 (119)
T 4egu_A            4 MDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTG   83 (119)
T ss_dssp             TTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             CCccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            47999987544334678999999999999999999999999999999999999886555554443   33333  23567


Q ss_pred             CceEEEe-e-ccCCCCeeEEEEEecC
Q 007415          464 KEAVFFE-W-LSKRGTHANLQAVPIP  487 (604)
Q Consensus       464 ~~~v~~E-~-~~~~~~H~HihvvPvp  487 (604)
                      ++++++. . +++...|+|+|+||+.
T Consensus        84 ~ni~~n~g~~agq~v~HlH~Hiip~~  109 (119)
T 4egu_A           84 FRVINNCGSDGGQEVKHLHYHILAGK  109 (119)
T ss_dssp             EEEEEEETTTTTCCSCSCCEEEEESS
T ss_pred             EEEEEeCCCCCCCCcCEEEEEEeCCc
Confidence            8887776 2 3344689999999974

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}

Probab=99.62  E-value=8.6e-16  Score=140.96  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=79.4

Q ss_pred             CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceEE
Q 007415          390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVF  468 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~v~  468 (604)
                      +|.||.+..+.....||+++++++++++..|.++||+||||++|+.++.+|+++++.+|....+.+.+.+.. .+..-+.
T Consensus         6 ~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   85 (138)
T 3p0t_A            6 ASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSG   85 (138)
T ss_dssp             HHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             CChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            699998754322345899999999999999999999999999999999999999999999887777766543 3444333


Q ss_pred             EeeccCCCCeeEEEEEecCc
Q 007415          469 FEWLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       469 ~E~~~~~~~H~HihvvPvp~  488 (604)
                      +..+++.++|+|+|+||+..
T Consensus        86 ~~~~gq~v~HlH~HiiPr~~  105 (138)
T 3p0t_A           86 LIIAGLEVPHLHVHVFPTRS  105 (138)
T ss_dssp             EEECCSSCSSCCEEEEEESC
T ss_pred             EEECCcccCEEEEEEecccc
Confidence            44345557899999999865

>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}

Probab=99.62  E-value=7.4e-17  Score=147.60  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=84.3

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceE
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAV  467 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~~v  467 (604)
                      +++|+||.+..  ....||+++++++++++..|.++||+||||++|+.++.+|+++++.+|....+.+.+.+...+++++
T Consensus         5 ~~~C~fC~i~~--~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~~~~~~ni~   82 (135)
T 3r6f_A            5 MEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGFERYNIL   82 (135)
T ss_dssp             -CCCHHHHHHH--HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCCCcCccccc--CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            56899999854  2345889999999999999999999999999999999999999999999999989888887777766


Q ss_pred             EEeeccCCCCeeEEEEEecCcc
Q 007415          468 FFEWLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       468 ~~E~~~~~~~H~HihvvPvp~~  489 (604)
                      ++...++...|+|+|+||+...
T Consensus        83 ~n~g~gq~v~HlH~HiiPR~~~  104 (135)
T 3r6f_A           83 QNNGNHQEVFHVHFHVIPFVSA  104 (135)
T ss_dssp             CCSSSSCSSSSCCEEEEECCBT
T ss_pred             EEcCCCCCccEEEEEEeccccC
Confidence            5542233468999999998654

>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}

Probab=99.61  E-value=4e-16  Score=145.07  Aligned_cols=98  Identities=21%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCce
Q 007415          391 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKEA  466 (604)
Q Consensus       391 C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~~~  466 (604)
                      |+||.+..+.....||+++++++++++..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.    ..|+++
T Consensus         1 CiFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni   80 (149)
T 2eo4_A            1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRL   80 (149)
T ss_dssp             CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CcCcccccCCCCccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence            9999875433345789999999999999999999999999999999999999999999977766665554    456666


Q ss_pred             EEEe--eccCCCCeeEEEEEecCc
Q 007415          467 VFFE--WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       467 v~~E--~~~~~~~H~HihvvPvp~  488 (604)
                      +++.  .+++...|+|+|+||+..
T Consensus        81 ~~n~g~~~gq~v~HlHiHviPr~~  104 (149)
T 2eo4_A           81 LTNIGRSAGQVIFHLHVHIIPTWE  104 (149)
T ss_dssp             ECCCSGGGTCCSCSCCEEEEEECS
T ss_pred             EEecCcCCCCCcCEEEEEEECCcC
Confidence            6655  233446899999999753

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A

Probab=99.60  E-value=3.7e-16  Score=141.26  Aligned_cols=99  Identities=17%  Similarity=0.093  Sum_probs=76.1

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g  463 (604)
                      .++|.||.+..+.....||+++++++++++..|.++||+||||++|+.++.+|++++..++..+.+.++++.+    +.|
T Consensus        14 ~~~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g   93 (126)
T 3o1c_A           14 GGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKG   93 (126)
T ss_dssp             TCSSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCCCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            5689999875332234689999999999999999999999999999999999998876666655544444333    346


Q ss_pred             CceEEEe--eccCCCCeeEEEEEec
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPI  486 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPv  486 (604)
                      ++++++.  .+++...|+|+|+||+
T Consensus        94 ~ni~~n~g~~agq~v~HlH~Hiipr  118 (126)
T 3o1c_A           94 YRMVVNEGSDGGQSVYHVHLHVLGG  118 (126)
T ss_dssp             EEEECCCHHHHTCCSSSCCEEEEES
T ss_pred             eEEEEecCCccCCccCEeEEEEeCC
Confidence            6766655  2344578999999996

>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}

Probab=99.60  E-value=6e-16  Score=152.27  Aligned_cols=102  Identities=21%  Similarity=0.167  Sum_probs=82.8

Q ss_pred             CCCCcccCCCCC-CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hc
Q 007415          388 SKECWFCLSSPS-VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQ  462 (604)
Q Consensus       388 ~~~C~FC~~~~~-~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~  462 (604)
                      .++|+||.+... .....||+++++++++++++|+++||+||||++|+.++.+|+++++.+|..+.+.+.+.++    +.
T Consensus        68 ~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~  147 (218)
T 3ano_A           68 SPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPH  147 (218)
T ss_dssp             --CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred             CCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            457999998754 2456799999999999999999999999999999999999999999999987766666555    45


Q ss_pred             CCceEEEe-ec-cCCC-CeeEEEEEecCcc
Q 007415          463 GKEAVFFE-WL-SKRG-THANLQAVPIPTS  489 (604)
Q Consensus       463 g~~~v~~E-~~-~~~~-~H~HihvvPvp~~  489 (604)
                      |++++++. .. ++.. .|+|+||||+...
T Consensus       148 g~ni~~n~G~~aGq~V~~HlHiHIIPR~~g  177 (218)
T 3ano_A          148 GFNVGLNLGTSAGGSLAEHLHVHVVPRWGG  177 (218)
T ss_dssp             EEEEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred             CEEEEEecCcccCCcccCEEEEEEEcccCC
Confidence            67777776 23 3345 8999999998654

>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1

Probab=99.60  E-value=4.4e-15  Score=138.83  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=77.2

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g  463 (604)
                      +.+|+||.+.    ...||+++++++++++++|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.    ..|
T Consensus         9 ~~~C~FC~~~----~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g   84 (154)
T 2oik_A            9 HKNCELCTTA----GGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDK   84 (154)
T ss_dssp             CTTCHHHHSC----CSEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred             CCCCccCCCC----CCeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4579999854    34689999999999999999999999999999999999999999888877666665554    344


Q ss_pred             CceEEEeeccCCCCeeEEEEEecCcc
Q 007415          464 KEAVFFEWLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       464 ~~~v~~E~~~~~~~H~HihvvPvp~~  489 (604)
                      ++++   ..++...|+|+|+||+...
T Consensus        85 ~ni~---~~gq~v~HlHiHiiPr~~~  107 (154)
T 2oik_A           85 INLA---SLGNMTPHVHWHVIPRFKR  107 (154)
T ss_dssp             EEEE---ECCSSSCSCEEEEEEECTT
T ss_pred             EEhH---HhCCCCCEEEEEEeCCCCC
Confidence            4443   2445578999999998654

>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0

Probab=99.59  E-value=1.1e-15  Score=142.22  Aligned_cols=101  Identities=17%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGK  464 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~  464 (604)
                      .+|.||.+-.+.....||++++++++++|..|.++||+||||++|+.++.+|+++++.+|....+.+.+.+..    .|+
T Consensus        11 ~~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~   90 (149)
T 3ksv_A           11 ANCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQY   90 (149)
T ss_dssp             TTCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEE
T ss_pred             ccCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence            4899999864333346899999999999999999999999999999999999999999999988888877664    356


Q ss_pred             ceEEEe--eccCCCCeeEEEEEecCcc
Q 007415          465 EAVFFE--WLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       465 ~~v~~E--~~~~~~~H~HihvvPvp~~  489 (604)
                      +++++.  .+++...|+|+|+||+...
T Consensus        91 ni~~n~g~~aGq~v~HlHiHiiPR~~~  117 (149)
T 3ksv_A           91 NVLQNNGSLAHQEVPHVHFHIIPKTDE  117 (149)
T ss_dssp             EEEECCSTTTTCCSSSCCEEEEEECCT
T ss_pred             EEEEecCcccCCCCCEEEEEEEecccC
Confidence            666554  2334468999999998654

>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1

Probab=99.58  E-value=7.9e-16  Score=142.70  Aligned_cols=100  Identities=17%  Similarity=0.131  Sum_probs=77.9

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-----
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-----  462 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~-----  462 (604)
                      +++|+||.+..+.....||++++++++++|++|..+||+||||++|++++.+|+++++.++..+.+.++++.+..     
T Consensus        34 m~~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~  113 (147)
T 1xqu_A           34 LENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEK  113 (147)
T ss_dssp             CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cCCCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            568999998544334579999999999999999999999999999999999998887777776666555555543     


Q ss_pred             CCceEEEe-e-ccCCCCeeEEEEEecC
Q 007415          463 GKEAVFFE-W-LSKRGTHANLQAVPIP  487 (604)
Q Consensus       463 g~~~v~~E-~-~~~~~~H~HihvvPvp  487 (604)
                      |++++++. . +++...|+|+|+||.-
T Consensus       114 gyni~~n~g~~aGq~v~HlHlHiiP~~  140 (147)
T 1xqu_A          114 GYRLITNCGVAAGQTVFHLHYHLLGGV  140 (147)
T ss_dssp             CEEEECCCSTTTTCCSCSCCEEEEESS
T ss_pred             CEEEEEecCcccCCCccEEEEEEeCCC
Confidence            45555544 2 2334689999999963

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*

Probab=99.43  E-value=1.7e-13  Score=126.96  Aligned_cols=89  Identities=15%  Similarity=0.220  Sum_probs=73.5

Q ss_pred             CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCceEEEe--ecc
Q 007415          400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKEAVFFE--WLS  473 (604)
Q Consensus       400 ~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~~~v~~E--~~~  473 (604)
                      ++...||+++++++++++..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.    ..|++++++.  .++
T Consensus        10 ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~ag   89 (147)
T 1fit_A           10 IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAG   89 (147)
T ss_dssp             ECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGT
T ss_pred             cCCcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccC
Confidence            4566789999999999999999999999999999999999999999999887766666554    4566766665  233


Q ss_pred             CCCCeeEEEEEecCc
Q 007415          474 KRGTHANLQAVPIPT  488 (604)
Q Consensus       474 ~~~~H~HihvvPvp~  488 (604)
                      +...|+|+|+||+..
T Consensus        90 q~v~HlH~HiiPr~~  104 (147)
T 1fit_A           90 QTVKHVHVHVLPRKA  104 (147)
T ss_dssp             CCSSSCCEEEEEECT
T ss_pred             CCccEEEEEEECCcC
Confidence            446899999999754

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A

Probab=99.37  E-value=2.1e-11  Score=122.55  Aligned_cols=201  Identities=11%  Similarity=0.028  Sum_probs=121.2

Q ss_pred             CEEEEEcCCCCCH------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChh-hHHHHHHHhcccCCCCCcEEEE
Q 007415            4 PRILLCGDVLGRL------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNYVEGRSEIPIPTYFI   70 (604)
Q Consensus         4 ~KILv~GDvhG~~------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~-~~~~~~~~l~g~~~~p~ptyfv   70 (604)
                      |||++++|+|+..            ..+-+.++.+++...++|+||++||++..... ....+.+++   ..+++|+|+|
T Consensus         1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l---~~l~~p~~~v   77 (274)
T 3d03_A            1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQIL---GSLNYPLYLI   77 (274)
T ss_dssp             CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHH---TTCSSCEEEE
T ss_pred             CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHH---HhcCCCEEEE
Confidence            7999999999984            33444445554433358999999999765321 222344555   4467899999


Q ss_pred             cCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCC-CCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHh-
Q 007415           71 GDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-  148 (604)
Q Consensus        71 ~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l-  148 (604)
                      .||||....+...+... +-        .+..|.   +. .-++..+|++|.+|......  .....++++.++-|.+. 
T Consensus        78 ~GNHD~~~~~~~~~~~~-~~--------~~~~~~---~~~~~~~~~~~~~~i~ld~~~~~--~~~~~~~~~~~~wl~~~l  143 (274)
T 3d03_A           78 PGNHDDKALFLEYLQPL-CP--------QLGSDA---NNMRCAVDDFATRLLFIDSSRAG--TSKGWLTDETISWLEAQL  143 (274)
T ss_dssp             CCTTSCHHHHHHHHGGG-SG--------GGCSCG---GGCCEEECSSSSEEEECCCCCTT--CSSBCCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhhh-hc--------CcccCC---CceEEEEEeCCEEEEEEeCCCCC--CCCCeeCHHHHHHHHHHH
Confidence            99999765444433310 00        000010   00 11234578999999765432  12345677777666542 


Q ss_pred             hcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEE
Q 007415          149 AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRF  227 (604)
Q Consensus       149 ~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRF  227 (604)
                      ........|+++|.+|........     ..  ....+...+.+++++. ++.++|+||.|..+...   .   ..++-+
T Consensus       144 ~~~~~~~~iv~~H~p~~~~~~~~~-----~~--~~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~~~~---~---~g~~~~  210 (274)
T 3d03_A          144 FEGGDKPATIFMHHPPLPLGNAQM-----DP--IACENGHRLLALVERFPSLTRIFCGHNHSLTMTQ---Y---RQALIS  210 (274)
T ss_dssp             HHHTTSCEEEEESSCSSCCSCTTT-----GG--GSBTTTHHHHHHHHHCTTEEEEEECSSSSCEEEE---E---TTEEEE
T ss_pred             HhCCCCCEEEEECCCCcccCCccc-----Cc--ccCcCHHHHHHHHHhCCCceEEEeCCCCCchhhe---E---CCEEEE
Confidence            222345789999999986532110     00  0134678899999988 79999999988754321   1   224566


Q ss_pred             EEcCCCC
Q 007415          228 LGLAPVG  234 (604)
Q Consensus       228 I~L~~~g  234 (604)
                      ++.|..+
T Consensus       211 ~~pg~~~  217 (274)
T 3d03_A          211 TLPGTVH  217 (274)
T ss_dssp             ECCCSSC
T ss_pred             EcCCcce
Confidence            7777665

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.33  E-value=1.5e-12  Score=141.61  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g  463 (604)
                      .+.|.||.  ...+...||+++++++++++..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.    ..|
T Consensus       296 ~~~c~fc~--~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~  373 (440)
T 1ems_A          296 TGGLKFAR--FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTS  373 (440)
T ss_dssp             SSCCEETT--EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             cCceeeec--cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            55899998  334566799999999999999999999999999999999999999999999988777776654    345


Q ss_pred             CceEEEe--eccCCCCeeEEEEEecCc
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPvp~  488 (604)
                      ++++++.  .+++...|+|+|+||+..
T Consensus       374 ~n~~~~~g~~~gq~v~HlH~Hiipr~~  400 (440)
T 1ems_A          374 TTICVQDGKDAGQTVPHVHIHILPRRA  400 (440)
T ss_dssp             EEEECCCSGGGTCCSSSCCEEEEEECS
T ss_pred             eEEEEecCCCCCCCccEEEEEEeCCCC
Confidence            5665554  223446899999999754

>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}

Probab=99.29  E-value=1e-11  Score=113.60  Aligned_cols=89  Identities=11%  Similarity=-0.035  Sum_probs=70.9

Q ss_pred             CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceEEEeeccCCCCee
Q 007415          401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLSKRGTHA  479 (604)
Q Consensus       401 ~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~v~~E~~~~~~~H~  479 (604)
                      +..++|+..+.|++.|.+.|..+||+||+|++|+.++.+++++++.++......+.+.+++ .|.+-+.+..+++.++|+
T Consensus        11 ~d~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~Hl   90 (137)
T 3ohe_A           11 ADTHKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQL   90 (137)
T ss_dssp             HHEEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSC
T ss_pred             cccEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEE
Confidence            3467899999999999999999999999999999999999999888887776666655443 344333333355668999


Q ss_pred             EEEEEecCcc
Q 007415          480 NLQAVPIPTS  489 (604)
Q Consensus       480 HihvvPvp~~  489 (604)
                      |+|+||+...
T Consensus        91 H~HviPR~~~  100 (137)
T 3ohe_A           91 HLHHIVRYQG  100 (137)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEeCCCCC
Confidence            9999997654

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A

Probab=99.29  E-value=7.4e-11  Score=121.98  Aligned_cols=201  Identities=11%  Similarity=0.022  Sum_probs=125.4

Q ss_pred             CCEEEEEcCCCCC------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-CCCCCcEE
Q 007415            3 PPRILLCGDVLGR------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-SEIPIPTY   68 (604)
Q Consensus         3 ~~KILv~GDvhG~------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~-~~~p~pty   68 (604)
                      +|||++++|+|..            ...+-+.++.+++....+|+||++||++.... .....+.+++... ...++|+|
T Consensus        25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~  104 (330)
T 3ib7_A           25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV  104 (330)
T ss_dssp             SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence            6899999999962            33444444444442335899999999986532 2222344454322 12468999


Q ss_pred             EEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHh
Q 007415           69 FIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL  148 (604)
Q Consensus        69 fv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l  148 (604)
                      +|.||||....+...+...         ..  ..+    ....++.++|++|.+|.+...  ......+++++++-|.+.
T Consensus       105 ~v~GNHD~~~~~~~~~~~~---------~~--~~~----~~~~~~~~~~~~~i~lds~~~--~~~~~~~~~~q~~wl~~~  167 (330)
T 3ib7_A          105 WVMGNHDDRAELRKFLLDE---------AP--SMA----PLDRVCMIDGLRIIVLDTSVP--GHHHGEIRASQLGWLAEE  167 (330)
T ss_dssp             ECCCTTSCHHHHHHHHHCC---------CC--CCS----CCCEEEEETTEEEEECCCCCT--TCCSBCCCHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHhccc---------cc--ccC----CcceEEEeCCEEEEEecCCCC--CCCCCccCHHHHHHHHHH
Confidence            9999999755444444310         00  001    112355788999999887653  122345678888777764


Q ss_pred             h-cCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEE
Q 007415          149 A-EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRF  227 (604)
Q Consensus       149 ~-~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRF  227 (604)
                      . .......|+++|.+|........     ..  ....+...+.+++...++.++|+||.|..+.+.       ...+.+
T Consensus       168 l~~~~~~~~iv~~Hh~p~~~~~~~~-----~~--~~~~~~~~l~~~l~~~~v~~v~~GH~H~~~~~~-------~~g~~~  233 (330)
T 3ib7_A          168 LATPAPDGTILALHHPPIPSVLDMA-----VT--VELRDQAALGRVLRGTDVRAILAGHLHYSTNAT-------FVGIPV  233 (330)
T ss_dssp             TTSCCTTCEEEECSSCSSCCSSGGG-----GG--GSBSCHHHHHHHHTTSSEEEEEECSSSSCEEEE-------ETTEEE
T ss_pred             HHhcccCCeEEEEECCCCCCCcccc-----cc--ccccCHHHHHHHHhccCceEEEECCCCCcccce-------ECCEEE
Confidence            3 22334479999999987532111     00  123577889999999999999999998764321       224677


Q ss_pred             EEcCCCC
Q 007415          228 LGLAPVG  234 (604)
Q Consensus       228 I~L~~~g  234 (604)
                      ++.|..+
T Consensus       234 ~~~gs~~  240 (330)
T 3ib7_A          234 SVASATC  240 (330)
T ss_dssp             EECCCSS
T ss_pred             EecCcce
Confidence            7777665

>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}

Probab=99.28  E-value=1e-11  Score=115.08  Aligned_cols=89  Identities=9%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceEEEeeccCCCCee
Q 007415          401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLSKRGTHA  479 (604)
Q Consensus       401 ~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~v~~E~~~~~~~H~  479 (604)
                      +..++|+.++.||+.|++.|.+|||+||+|++|+.++.+++++++.++......+.+.+++ .+.+-+.+..+++.++|+
T Consensus        11 ~d~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~Hl   90 (149)
T 3i24_A           11 QDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQL   90 (149)
T ss_dssp             HHEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSC
T ss_pred             cCCEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEE
Confidence            3467899999999999999999999999999999999999999988887766666555442 344433344455567999


Q ss_pred             EEEEEecCcc
Q 007415          480 NLQAVPIPTS  489 (604)
Q Consensus       480 HihvvPvp~~  489 (604)
                      |+||||+...
T Consensus        91 H~HvIPR~~~  100 (149)
T 3i24_A           91 HIHHIARFTT  100 (149)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEeCCccC
Confidence            9999998653

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=99.13  E-value=6.4e-11  Score=124.89  Aligned_cols=98  Identities=16%  Similarity=0.235  Sum_probs=77.9

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGK  464 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~  464 (604)
                      +.|.||.+...   .+||++++++++++|..|..|||+||||++|+.++.+++++++.+|..+.+.+.+.+.    ..++
T Consensus       214 ~~ciFc~ii~~---E~iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~y  290 (351)
T 1z84_A          214 GKCCLCEAKSK---HFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPY  290 (351)
T ss_dssp             SSCTTTTHHHH---SEEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred             CCCHHHHHHhc---CeEEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            47999987532   2289999999999999999999999999999999999999999999988776654433    3467


Q ss_pred             ceEEEe-eccC-----CCCeeEEEEEecCcc
Q 007415          465 EAVFFE-WLSK-----RGTHANLQAVPIPTS  489 (604)
Q Consensus       465 ~~v~~E-~~~~-----~~~H~HihvvPvp~~  489 (604)
                      +++++. ..++     ...|+|+|++|+-+.
T Consensus       291 n~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~  321 (351)
T 1z84_A          291 NYMIHTSPLKVTESQLPYTHWFLQIVPQLSG  321 (351)
T ss_dssp             EEEEECCCTTCCGGGGGGCCCEEEEEECCCC
T ss_pred             EEEEeCCCccCCCCCCccceEEEEEEccCCC
Confidence            777665 2222     357999999996543

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7

Probab=99.11  E-value=3.9e-10  Score=106.99  Aligned_cols=132  Identities=14%  Similarity=-0.046  Sum_probs=90.2

Q ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH
Q 007415            1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV   80 (604)
Q Consensus         1 m~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~   80 (604)
                      |++|||+++||+||+...+-+.++.+.+   ..|+||++||+-.+          ++....   .|+|+|.||||...  
T Consensus         4 m~~m~i~~isD~H~~~~~~~~~~~~~~~---~~d~i~~~GD~~~~----------~l~~l~---~~~~~v~GNhD~~~--   65 (176)
T 3ck2_A            4 MAKQTIIVMSDSHGDSLIVEEVRDRYVG---KVDAVFHNGDSELR----------PDSPLW---EGIRVVKGNMDFYA--   65 (176)
T ss_dssp             CCCEEEEEECCCTTCHHHHHHHHHHHTT---TSSEEEECSCCCSC----------TTCGGG---TTEEECCCTTCCST--
T ss_pred             ccCcEEEEEecCCCCHHHHHHHHHHhhc---CCCEEEECCCCchH----------HHHhhh---CCeEEecCcccchh--
Confidence            8889999999999998766555555542   58999999997321          111111   28999999998421  


Q ss_pred             HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 007415           81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT  160 (604)
Q Consensus        81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLT  160 (604)
                        .+                 |.      ..++++                                     .+..|+++
T Consensus        66 --~~-----------------p~------~~~~~~-------------------------------------~~~~i~~~   83 (176)
T 3ck2_A           66 --GY-----------------PE------RLVTEL-------------------------------------GSTKIIQT   83 (176)
T ss_dssp             --TC-----------------CS------EEEEEE-------------------------------------TTEEEEEE
T ss_pred             --cC-----------------Cc------EEEEEE-------------------------------------CCeEEEEE
Confidence              00                 10      001111                                     23678999


Q ss_pred             CCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          161 NEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       161 h~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      |.+|.++                ..+...+.++++..++.+.++||.|..+...       ...+++||.|.++.
T Consensus        84 Hg~~~~~----------------~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~~-------~~~~~~inpGs~~~  135 (176)
T 3ck2_A           84 HGHLFDI----------------NFNFQKLDYWAQEEEAAICLYGHLHVPSAWL-------EGKILFLNPGSISQ  135 (176)
T ss_dssp             CSGGGTT----------------TTCSHHHHHHHHHTTCSEEECCSSCCEEEEE-------ETTEEEEEECCSSS
T ss_pred             CCCccCC----------------CCCHHHHHHHHHhcCCCEEEECCcCCCCcEE-------ECCEEEEECCCCCc
Confidence            9988653                1356678888888999999999988754321       23489999998874

>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*

Probab=99.10  E-value=5e-11  Score=125.71  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=75.7

Q ss_pred             CCCcccCCCCC-CC-cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hc
Q 007415          389 KECWFCLSSPS-VE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQ  462 (604)
Q Consensus       389 ~~C~FC~~~~~-~~-~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~  462 (604)
                      +.|.||.+... .+ ...||++++++++++|..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.    ..
T Consensus       194 ~~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~  273 (348)
T 1gup_A          194 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCS  273 (348)
T ss_dssp             SSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            58999987532 21 23688999999999999999999999999999999999999999999877655555443    33


Q ss_pred             -CCceEEEe-ecc---CCCCeeEEEEEe
Q 007415          463 -GKEAVFFE-WLS---KRGTHANLQAVP  485 (604)
Q Consensus       463 -g~~~v~~E-~~~---~~~~H~HihvvP  485 (604)
                       +++++++- ..+   +...|+|+|+||
T Consensus       274 ~~Yn~g~~~~p~~g~~q~v~HlHiHiiP  301 (348)
T 1gup_A          274 FPYSMGWHGAPFNGEENQHWQLHAHFYP  301 (348)
T ss_dssp             CCEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred             CCeEEEEEeCCCCCCCCcccEEEEEEec
Confidence             66666665 122   235799999999

>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}

Probab=99.05  E-value=8.2e-10  Score=100.69  Aligned_cols=88  Identities=10%  Similarity=0.059  Sum_probs=66.4

Q ss_pred             CcceEEEECCEEEEEecCCCCCCCeEEEEec-cccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceEEEeeccCCCCe
Q 007415          401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPV-EHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLSKRGTH  478 (604)
Q Consensus       401 ~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~-~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~v~~E~~~~~~~H  478 (604)
                      +...+|+..+.|++.|.+.|..|| .||||+ +|+.++.+++++++.++......+.+.++. .+.+-+.+..+++.++|
T Consensus        13 ~~~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~H   91 (135)
T 3nrd_A           13 RDGIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQ   91 (135)
T ss_dssp             HHEEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCS
T ss_pred             cCCEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccCCCCE
Confidence            345689999999999999999995 577787 799999999999888777766666555442 33333333335556799


Q ss_pred             eEEEEEecCcc
Q 007415          479 ANLQAVPIPTS  489 (604)
Q Consensus       479 ~HihvvPvp~~  489 (604)
                      +|+|+||+-..
T Consensus        92 lH~HviPR~~~  102 (135)
T 3nrd_A           92 LHVHVIARREG  102 (135)
T ss_dssp             CCEEEEEECTT
T ss_pred             EEEEEecCCCC
Confidence            99999997543

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A

Probab=99.03  E-value=5.4e-09  Score=100.68  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      +|||++++|+||+...+-+.++.++. . .+|+||++||++.+      +..+++.   +++.|+|+|.||||...
T Consensus        25 ~m~i~~iSD~Hg~~~~l~~~l~~~~~-~-~~D~ii~~GDl~~~------~~~~~l~---~l~~~~~~V~GNhD~~~   89 (190)
T 1s3l_A           25 HMKIGIMSDTHDHLPNIRKAIEIFND-E-NVETVIHCGDFVSL------FVIKEFE---NLNANIIATYGNNDGER   89 (190)
T ss_dssp             -CEEEEECCCTTCHHHHHHHHHHHHH-S-CCSEEEECSCCCST------HHHHHGG---GCSSEEEEECCTTCCCH
T ss_pred             CeEEEEEeeCCCCHHHHHHHHHHHhh-c-CCCEEEECCCCCCH------HHHHHHH---hcCCCEEEEeCCCcchH
Confidence            38999999999998766655655543 2 47999999999753      1344443   34689999999999753

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A

Probab=99.01  E-value=2.6e-09  Score=106.57  Aligned_cols=188  Identities=11%  Similarity=0.056  Sum_probs=101.6

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH---hhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVN---KSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV   80 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~---~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~   80 (604)
                      |||+++||+||++..+.+.++.+.   ......|+||++||++..... ..+..+++....+ ..++|+|.||||..  .
T Consensus         2 m~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~-~~~~~~~l~~l~~-~~~~~~v~GNhD~~--~   77 (252)
T 1nnw_A            2 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPY-PKEVIEVIKDLTK-KENVKIIRGKYDQI--I   77 (252)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSC-HHHHHHHHHHHHH-HSCEEEECCHHHHH--H
T ss_pred             cEEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCC-HHHHHHHHHhhHh-hcCeeEEecchHHH--h
Confidence            799999999999887766666665   332147999999999754322 1223344432111 15799999999732  1


Q ss_pred             HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC----CCCcc
Q 007415           81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE----PGIVD  156 (604)
Q Consensus        81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~----~~~vD  156 (604)
                      .....           .   +.+  +.. ....++.++.   ..+. .   .+...++++.++-|..+...    ..+.+
T Consensus        78 ~~~~~-----------~---~~~--~~~-~~~~~~~~~~---~~~~-~---~~~~~l~~~~~~~L~~lp~~~~~~~~~~~  133 (252)
T 1nnw_A           78 AMSDP-----------H---ATD--PGY-IDKLELPGHV---KKAL-K---FTWEKLGHEGREYLRDLPIYLVDKIGGNE  133 (252)
T ss_dssp             HHSCT-----------T---CSS--SGG-GGGSSCCHHH---HHHH-H---HHHHHHHHHHHHHHHTSCSCEEEEETTEE
T ss_pred             hcccc-----------c---cCC--ccc-ccchhhhHHH---HHHH-H---HHHHHCCHHHHHHHHhCCceEEEeeCCcE
Confidence            11110           0   000  000 0000000000   0000 0   00011233334444443110    12458


Q ss_pred             EEEeCCCCc-cccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCC
Q 007415          157 LFLTNEWPS-GVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG  234 (604)
Q Consensus       157 ILLTh~wP~-gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g  234 (604)
                      |+++|..|. ......          ....+...+.+++... ++++.|+||.|..+...       ...|.+||.|.+|
T Consensus       134 i~~~H~~p~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~vi~GHtH~~~~~~-------~~~~~~in~Gs~~  196 (252)
T 1nnw_A          134 VFGVYGSPINPFDGEV----------LAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAM-------TRYGRVVCPGSVG  196 (252)
T ss_dssp             EEEESSCSSCTTTCCC----------CSSCCHHHHHHHHGGGTTSSEEEESTTCSEEEEE-------ETTEEEEEECCSS
T ss_pred             EEEEcCCCCCCccccc----------CCCCCHHHHHHHHhcCCCCCEEEECCccccceEe-------cCCeEEEECCCcc
Confidence            999999884 321110          0123557788888888 99999999988754321       2248999999998


Q ss_pred             Cc
Q 007415          235 NK  236 (604)
Q Consensus       235 n~  236 (604)
                      .+
T Consensus       197 ~~  198 (252)
T 1nnw_A          197 FP  198 (252)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}

Probab=98.93  E-value=4.4e-09  Score=97.37  Aligned_cols=88  Identities=10%  Similarity=0.017  Sum_probs=67.4

Q ss_pred             CcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceEEEeeccCCCCe
Q 007415          401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLSKRGTH  478 (604)
Q Consensus       401 ~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~-H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~v~~E~~~~~~~H  478 (604)
                      +...++.....+++.+...| +.+|+||||++ |+.++.+++++++.++....+.+.+.++. .+.+-+.+..+++.++|
T Consensus        16 ~d~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~~aGq~V~H   94 (149)
T 3i4s_A           16 EDTIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQ   94 (149)
T ss_dssp             HHEEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCS
T ss_pred             hCCEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCcCCE
Confidence            45678899999999998544 67799999999 99999999999998888777766666543 33332333335566799


Q ss_pred             eEEEEEecCcc
Q 007415          479 ANLQAVPIPTS  489 (604)
Q Consensus       479 ~HihvvPvp~~  489 (604)
                      +|+||||+...
T Consensus        95 lH~HvIPR~~~  105 (149)
T 3i4s_A           95 LHVHIIARRTG  105 (149)
T ss_dssp             CCEEEEEECTT
T ss_pred             EEEEEECCcCC
Confidence            99999998653

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7

Probab=98.92  E-value=3.3e-09  Score=104.03  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=87.5

Q ss_pred             CEEEEEcCCCCCHHH--HHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH
Q 007415            4 PRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL   81 (604)
Q Consensus         4 ~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l   81 (604)
                      |||++++|+|++...  +.+.+..+.+ ....|+||++||++..      +..++|.   +++.|+|+|.||||...   
T Consensus        26 m~i~~iSD~H~~~~~~~l~~~l~~~~~-~~~~D~vi~~GDl~~~------~~l~~l~---~~~~~v~~V~GNHD~~~---   92 (215)
T 2a22_A           26 DLVLLIGDLKIPYGAKELPSNFRELLA-TDKINYVLCTGNVCSQ------EYVEMLK---NITKNVYIVSGDLDSAI---   92 (215)
T ss_dssp             EEEEEECCCCTTTTCSSCCGGGHHHHH-CTTCCEEEECSCCCCH------HHHHHHH---HHCSCEEECCCTTCCSC---
T ss_pred             cEEEEEecCCCCCChHHHHHHHHHHHh-cCCCCEEEECCCCCCH------HHHHHHH---HcCCCEEEecCCCcCcc---
Confidence            799999999997532  2233333322 2358999999999852      2334443   23468999999998521   


Q ss_pred             HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 007415           82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN  161 (604)
Q Consensus        82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh  161 (604)
                                     .. ..+.  ++..-.     ...+                           +  ...+..|+++|
T Consensus        93 ---------------~~-~~~~--~~~~lp-----~~~~---------------------------~--~~~~~~i~l~H  120 (215)
T 2a22_A           93 ---------------FN-PDPE--SNGVFP-----EYVV---------------------------V--QIGEFKIGLMH  120 (215)
T ss_dssp             ---------------CB-CCGG--GTBCCC-----SEEE---------------------------E--EETTEEEEEEC
T ss_pred             ---------------cc-cChh--hHhhCC-----ceEE---------------------------E--ecCCeEEEEEc
Confidence                           00 0000  000000     0000                           0  01346789999


Q ss_pred             CCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      ..|...                ..+...+.++++...+.|.++||.|..+..       ....+++||.|.++.
T Consensus       121 g~~~~~----------------~~~~~~l~~~~~~~~~d~vl~GHtH~~~~~-------~~~~~~~inpGS~~~  171 (215)
T 2a22_A          121 GNQVLP----------------WDDPGSLEQWQRRLDCDILVTGHTHKLRVF-------EKNGKLFLNPGTATG  171 (215)
T ss_dssp             STTSSS----------------TTCHHHHHHHHHHHTCSEEEECSSCCCEEE-------EETTEEEEECCCSSC
T ss_pred             CCccCC----------------CCCHHHHHHHHhhcCCCEEEECCcCCCccE-------eeCCEEEEECCcccc
Confidence            777432                135567888888889999999998865331       123589999999864

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0

Probab=98.91  E-value=7.2e-10  Score=110.84  Aligned_cols=175  Identities=13%  Similarity=0.031  Sum_probs=102.7

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL   82 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~   82 (604)
                      .|||+++||+||++..+.+.++.+.    +.|.+|++||++..... ..++.+++...   + .+|+|.||||..  +..
T Consensus         3 ~mri~~isDiHg~~~~l~~~l~~~~----~~d~ii~~GDl~~~g~~-~~~~~~~l~~~---~-~~~~v~GNhD~~--~~~   71 (246)
T 3rqz_A            3 AMRILIISDVHANLVALEAVLSDAG----RVDDIWSLGDIVGYGPR-PRECVELVRVL---A-PNISVIGNHDWA--CIG   71 (246)
T ss_dssp             CCCEEEECCCTTCHHHHHHHHHHHC----SCSEEEECSCCSSSSSC-HHHHHHHHHHH---C-SSEECCCHHHHH--HTC
T ss_pred             CcEEEEEeecCCCHHHHHHHHHhcc----CCCEEEECCCcCCCCCC-HHHHHHHHHhc---C-CCEEEeCchHHH--Hhc
Confidence            5899999999999987765555543    58999999999865432 22344444321   1 269999999731  110


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCC-CCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSS-EGQQFGTYSQDDVDALRALAEEPGIVDLFLTN  161 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~-~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh  161 (604)
                      ...           .    ..           ..        +.... ...+...++++.++-|..+......-+|+++|
T Consensus        72 ~~~-----------~----~~-----------~~--------~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~i~~~H  117 (246)
T 3rqz_A           72 RLS-----------L----DE-----------FN--------PVARFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVH  117 (246)
T ss_dssp             CCC-----------C----C-------------C--------GGGGCHHHHHHHHCCHHHHHHHHHCCSEEEETTEEEES
T ss_pred             cCC-----------c----cc-----------cC--------HHHHHHHHHHHHHcCHHHHHHHHhCCcEEEECCEEEEE
Confidence            000           0    00           00        00000 00001234566666666653211123899999


Q ss_pred             CCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccc-----------------ccccCCCcce
Q 007415          162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYARE-----------------PYSNVDAVHV  224 (604)
Q Consensus       162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~-----------------Py~~~~~~~~  224 (604)
                      ..|.+....            .......+.++++...+.+.||||.|.-|.+.                 ++.-  .. .
T Consensus       118 g~p~~~~~~------------~~~~~~~~~~~l~~~~~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l--~~-g  182 (246)
T 3rqz_A          118 GSPRHPIWE------------YIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDV--SS-G  182 (246)
T ss_dssp             SCSSSTTTC------------CCCSHHHHHHHGGGCCSSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEEC--SS-S
T ss_pred             CCcCCcccc------------ccCChHHHHHHHhccCCCEEEECCcCcccEEEecccccccccccccccceeec--CC-C
Confidence            988764210            11234677888888999999999998754332                 1111  11 2


Q ss_pred             eEEEEcCCCCCcc
Q 007415          225 TRFLGLAPVGNKE  237 (604)
Q Consensus       225 TRFI~L~~~gn~~  237 (604)
                      +++||.|.+|.+.
T Consensus       183 ~~ivNpGSVG~Pr  195 (246)
T 3rqz_A          183 RYIINPGAVGQPR  195 (246)
T ss_dssp             CEEEEECCSSCCC
T ss_pred             eEEEECCccCCCC
Confidence            8999999998753

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A

Probab=98.89  E-value=3.6e-09  Score=101.77  Aligned_cols=135  Identities=13%  Similarity=0.123  Sum_probs=86.1

Q ss_pred             CEEEEEcCCCCCHH--HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH
Q 007415            4 PRILLCGDVLGRLN--QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL   81 (604)
Q Consensus         4 ~KILv~GDvhG~~~--~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l   81 (604)
                      |||++++|+|++..  .+.+++.++.++ ...|+||++||++..      +..++|.   +.+.|+|+|.||||...   
T Consensus        11 m~i~~iSD~H~~~~~~~~~~~l~~~~~~-~~~d~ii~~GDl~~~------~~~~~l~---~~~~~~~~v~GNhD~~~---   77 (192)
T 1z2w_A           11 MLVLVLGDLHIPHRCNSLPAKFKKLLVP-GKIQHILCTGNLCTK------ESYDYLK---TLAGDVHIVRGDFDENL---   77 (192)
T ss_dssp             CEEEEECCCCBTTTCSSCCHHHHTTCCT-TSCSEEEECSCCBSH------HHHHHHH---HHCSEEEECCCTTCCCT---
T ss_pred             eEEEEEecCCCCccchhHHHHHHHHhcc-CCCCEEEEcCCCCCH------HHHHHHH---hcCCCEEEEcCCcCccc---
Confidence            79999999998642  223334333222 258999999999841      1234443   23468999999998521   


Q ss_pred             HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 007415           82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN  161 (604)
Q Consensus        82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh  161 (604)
                       .+                 +.      ..++++                                     .+..|+++|
T Consensus        78 -~l-----------------p~------~~~~~~-------------------------------------~~~~i~l~H   96 (192)
T 1z2w_A           78 -NY-----------------PE------QKVVTV-------------------------------------GQFKIGLIH   96 (192)
T ss_dssp             -TS-----------------CS------EEEEEE-------------------------------------TTEEEEEEC
T ss_pred             -cC-----------------Cc------ceEEEE-------------------------------------CCEEEEEEC
Confidence             00                 00      001112                                     235688888


Q ss_pred             CCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      -.|...                ..+...+.++++...+.|.++||.|..+..       ....+++||.|.++.
T Consensus        97 g~~~~~----------------~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~-------~~~~~~~inpGS~~~  147 (192)
T 1z2w_A           97 GHQVIP----------------WGDMASLALLQRQFDVDILISGHTHKFEAF-------EHENKFYINPGSATG  147 (192)
T ss_dssp             SCCCCB----------------TTCHHHHHHHHHHHSSSEEECCSSCCCEEE-------EETTEEEEECCCTTC
T ss_pred             CCcCCC----------------CCCHHHHHHHHHhcCCCEEEECCcCcCccE-------eECCEEEEECCcccc
Confidence            777532                124556778888899999999998865432       123589999999864

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*

Probab=98.88  E-value=8.7e-09  Score=104.72  Aligned_cols=184  Identities=11%  Similarity=0.105  Sum_probs=107.1

Q ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH
Q 007415            1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV   80 (604)
Q Consensus         1 m~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~   80 (604)
                      |...||++++|+||++..+-+.++.+...  +.|.|||+||++..... ..++.++|..   . .|+++|.||||.  .+
T Consensus         9 ~~~~~i~~iSDiHg~~~~l~~vl~~~~~~--~~D~ii~~GDlv~~g~~-~~~~~~~l~~---~-~~~~~v~GNhD~--~~   79 (270)
T 3qfm_A            9 MDMTKIALLSDIHGNTTALEAVLADARQL--GVDEYWLLGDILMPGTG-RRRILDLLDQ---L-PITARVLGNWED--SL   79 (270)
T ss_dssp             --CEEEEEECCCTTCHHHHHHHHHHHHHT--TCCEEEECSCCSSSSSC-SHHHHHHHHT---S-CEEEECCCHHHH--HH
T ss_pred             ccccEEEEEecCCCCHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCC-HHHHHHHHHc---c-CCEEEEcCChHH--HH
Confidence            45679999999999998777666666543  47999999999764332 2345566643   2 278999999973  33


Q ss_pred             HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc----CCCCcc
Q 007415           81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE----EPGIVD  156 (604)
Q Consensus        81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~----~~~~vD  156 (604)
                      +.....          ...       +.......+        +-..   .-+...++++.++-|..+-.    ...+..
T Consensus        80 ~~~~~~----------~~~-------~~~~~~~~~--------~~~~---~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~  131 (270)
T 3qfm_A           80 WHGVRK----------ELD-------STRPSQRYL--------LRQC---QYVLEEISLEEIEVLHNQPLQIHRQFGDLT  131 (270)
T ss_dssp             HHHHTT----------CSC-------TTSHHHHHH--------HHHH---HHHHTTSCHHHHHHHHSCCSEEEEEETTEE
T ss_pred             HHhhcc----------ccC-------CCcHHHHHH--------HHHH---HHHHHHcCHHHHHHHHhCCCceEEEECCcE
Confidence            332210          000       000000000        0000   00012455676766765421    114568


Q ss_pred             EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415          157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK  236 (604)
Q Consensus       157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~  236 (604)
                      |+++|-.|.......    +.     .......+.+++......+.|+||.|..+.+.      ....+.+||.|.+|.+
T Consensus       132 i~lvHg~p~~~~~~~----~~-----~~~~~~~l~~~~~~~~~d~~i~GHtH~~~~~~------~~~~~~~iNpGSvg~p  196 (270)
T 3qfm_A          132 VGISHHLPDKNWGRE----LI-----HTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRY------GTGGQLIVNPGSIGQP  196 (270)
T ss_dssp             EEEESSBTTBSSSST----TS-----TTCCHHHHHHTTTTTTCSEEECCSSCSEEEEE------CTTSCEEEEECCSSSC
T ss_pred             EEEEECCCCCCCCce----ec-----CCCcHHHHHHHhcccCCCEEEECCcCchHhee------ccCCEEEEECCCccCC
Confidence            999998887542110    00     12234457777777889999999998643321      1235789999999975

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12

Probab=98.80  E-value=4.1e-08  Score=100.27  Aligned_cols=209  Identities=11%  Similarity=-0.013  Sum_probs=111.1

Q ss_pred             CCEEEEEcCCCCCH-------------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhcc
Q 007415            3 PPRILLCGDVLGRL-------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVEG   59 (604)
Q Consensus         3 ~~KILv~GDvhG~~-------------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~g   59 (604)
                      .|||++++|+|...                   ..+-+.++.+++  .++|+||++||+......    ..+.+..++.-
T Consensus         5 ~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~   82 (322)
T 2nxf_A            5 VFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR--ERVQCVVQLGDIIDGHNRRRDASDRALDTVMAE   82 (322)
T ss_dssp             SEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHH--TTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHH
T ss_pred             ceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCccCCCCCcchHHHHHHHHHHHH
Confidence            48999999999865                   333344444444  357999999999765320    01222222222


Q ss_pred             cCCCCCcEEEEcCCCCCh----HHHHHHHhccccccCcccCCceecCCEEEcCC-CCeEEE-cCcEEEEEecccCC----
Q 007415           60 RSEIPIPTYFIGDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTL-HGLSVAYLSGRQSS----  129 (604)
Q Consensus        60 ~~~~p~ptyfv~GNh~~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~~-~GlrIa~lgG~~~~----  129 (604)
                      ....++|+|+++||||..    ..+...+..... ......+..+ +.   .+. .-.+.. .|++|.+|.+....    
T Consensus        83 l~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~y~~~~~~~~~~i~ld~~~~~~~~~  157 (322)
T 2nxf_A           83 LDACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQ-RTGTDTGSDL-IG---DDIYAYEFSPAPNFRFVLLDAYDLSVIGR  157 (322)
T ss_dssp             HHTTCSEEEECCCHHHHHHCCHHHHHTSTTCCCC-------CEEC-GG---GTCCCEEEEEETTEEEEECCTTSBCSSSS
T ss_pred             HHhcCCcEEEecCCCCcccCCHHHHhhhhCCccc-cccccccccc-CC---CCceEEEEecCCCEEEEEEcCceeccccc
Confidence            234678999999999852    111111110000 0000000000 00   111 112344 68888888765310    


Q ss_pred             ------------------CC------C------------CCCCCCHHHHHHHHHh-hcCC--CCccEEEeCCCCcccccc
Q 007415          130 ------------------EG------Q------------QFGTYSQDDVDALRAL-AEEP--GIVDLFLTNEWPSGVTNK  170 (604)
Q Consensus       130 ------------------~~------~------------~~~~~te~d~~~L~~l-~~~~--~~vDILLTh~wP~gi~~~  170 (604)
                                        +.      .            ....++++.++-|.+. ....  ..--|+++|.+|..... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~q~~wL~~~L~~~~~~~~~~iv~~H~p~~~~~~-  236 (322)
T 2nxf_A          158 EEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAA-  236 (322)
T ss_dssp             CTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHHHHHHHHHHHHTCEEEEEESSCCCTTSS-
T ss_pred             CCCChhhHHHHHHHhhcCcccccccCccccccccccccccCCccCHHHHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC-
Confidence                              00      0            0123456666655542 1111  23359999999976532 


Q ss_pred             ccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCC
Q 007415          171 AAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV  233 (604)
Q Consensus       171 ~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~  233 (604)
                       +    +..   ...+...+.+++.+. +.+++|+||.|.......      ...+++|+.+..
T Consensus       237 -~----~~~---~~~~~~~~~~ll~~~~~v~~~~~GH~H~~~~~~~------~~g~~~i~~~~~  286 (322)
T 2nxf_A          237 -D----PIC---LAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTD------SSGAQHITLEGV  286 (322)
T ss_dssp             -C----GGG---SCTTHHHHHHHHHTCTTEEEEEECSCTTCEEEEC------TTSCEEEECCCG
T ss_pred             -C----ccc---cccCHHHHHHHHhcCCCeEEEEcCCcCCCCceec------cCCceEEEecch
Confidence             1    001   134678888888887 678899999886533221      224678877665

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*

Probab=98.77  E-value=3.1e-08  Score=100.90  Aligned_cols=205  Identities=11%  Similarity=0.021  Sum_probs=110.0

Q ss_pred             CCEEEEEcCCCCCH---------HHHHHHHHHHHhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccC---CC-CCc
Q 007415            3 PPRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRS---EI-PIP   66 (604)
Q Consensus         3 ~~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~---~~~~~~~~~~l~g~~---~~-p~p   66 (604)
                      .+||+++||+|...         ..+.+.+..+.++. .+|+||++||++...   .....++.+.+....   .+ ++|
T Consensus         6 ~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~~-~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p   84 (313)
T 1ute_A            6 ILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTL-GADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVP   84 (313)
T ss_dssp             CEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHH-CCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCC
T ss_pred             ceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHhc-CCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCC
Confidence            58999999999863         34555555543333 489999999985321   111123444333211   24 789


Q ss_pred             EEEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEE------cCcEEEEEecccCCCC---------
Q 007415           67 TYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL------HGLSVAYLSGRQSSEG---------  131 (604)
Q Consensus        67 tyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~------~GlrIa~lgG~~~~~~---------  131 (604)
                      +|+|+||||........+.-..      ....+..++.+|     .+.+      .+++|.+|........         
T Consensus        85 ~~~v~GNHD~~~~~~~~~~~~~------~~~~~~~~~~~y-----~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~  153 (313)
T 1ute_A           85 WHVLAGNHDHLGNVSAQIAYSK------ISKRWNFPSPYY-----RLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQP  153 (313)
T ss_dssp             EEECCCHHHHHSCHHHHHHGGG------TSTTEECCSSSE-----EEEEECTTSSCEEEEEECCHHHHHCCGGGSTTCSC
T ss_pred             EEEECCCCccCCCccccccccc------cCCCccCcccce-----EEEEecCCCCceEEEEEEEChHHhCcCcccccccc
Confidence            9999999985322222111000      001111122111     1122      2677777765431100         


Q ss_pred             --CCCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC
Q 007415          132 --QQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG  208 (604)
Q Consensus       132 --~~~~~~te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~  208 (604)
                        .....+.++.++-|.+ +.......-|+++|.+|........          .......+.+++++.+..++|+||.|
T Consensus       154 ~~~~~~~~~~~q~~wL~~~L~~~~~~~~iv~~H~p~~~~~~~~~----------~~~~~~~l~~~l~~~~v~~~l~GH~H  223 (313)
T 1ute_A          154 ERPRNLALARTQLAWIKKQLAAAKEDYVLVAGHYPVWSIAEHGP----------THCLVKQLLPLLTTHKVTAYLCGHDH  223 (313)
T ss_dssp             CSCSCHHHHHHHHHHHHHHHHHCCCSEEEEECSSCSSCCSSSCC----------CHHHHHHTHHHHHHTTCSEEEECSSS
T ss_pred             CCccccchHHHHHHHHHHHHHhCCCCeEEEEECCCCccCCCCCC----------cHHHHHHHHHHHHHcCCcEEEECChh
Confidence              0011223445555554 2223346789999999987532111          00112456778888899999999988


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCC
Q 007415          209 VFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       209 ~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      .+ ++.   .  ....+.+|+.|..|.
T Consensus       224 ~~-~~~---~--~~~g~~~i~~gs~~~  244 (313)
T 1ute_A          224 NL-QYL---Q--DENGLGFVLSGAGNF  244 (313)
T ss_dssp             SE-EEE---E--CTTCCEEEEECBSSC
T ss_pred             hh-hhc---c--CCCCceEEEECCCcC
Confidence            54 211   1  122477888887764

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}

Probab=98.76  E-value=2.2e-07  Score=100.43  Aligned_cols=191  Identities=9%  Similarity=0.033  Sum_probs=106.0

Q ss_pred             CCEEEEEcCCCCCH-------------------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHH
Q 007415            3 PPRILLCGDVLGRL-------------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNY   56 (604)
Q Consensus         3 ~~KILv~GDvhG~~-------------------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~   56 (604)
                      .|||++++|+|...                         ...++.+-...++. ++|+||++||++.... .....+.++
T Consensus        39 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~  117 (443)
T 2xmo_A           39 NLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK-KTDVLIISGDLTNNGEKTSHEELAKK  117 (443)
T ss_dssp             CEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH-TCSEEEEESCCBSSCCHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCHHHHHHHHHH
Confidence            37999999999742                         22333332222233 4699999999975432 112234444


Q ss_pred             hcccCCCCCcEEEEcCCCCChHHH-------------------HHHHhccccccCcccCCceecCCEEEcCCCCeE---E
Q 007415           57 VEGRSEIPIPTYFIGDYGVGAAKV-------------------LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF---T  114 (604)
Q Consensus        57 l~g~~~~p~ptyfv~GNh~~~~~~-------------------l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~---~  114 (604)
                      +......++|+|+|+||||.....                   +...-        ...+.  ...+.--....-+   .
T Consensus       118 l~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~y~~~~  187 (443)
T 2xmo_A          118 LTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIY--------SDFGY--EDAISSDEFSLSYLAAP  187 (443)
T ss_dssp             HHHHHHTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHHHHHT--------CCCCC--TTCSEECSSSSCEEECS
T ss_pred             HHHHHhCCCeEEEECCcCCCCCccccccCCcccccccccCHHHHHHHh--------hhcCh--hhhhccCCCCceEEEec
Confidence            443233478999999999963210                   00000        00000  0000000001112   2


Q ss_pred             EcCcEEEEEecccCCC------CCCCCCCCHHHHHHHHHhh---cCCCCccEEEeCCCCccccccccccccccCcCCCCC
Q 007415          115 LHGLSVAYLSGRQSSE------GQQFGTYSQDDVDALRALA---EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSN  185 (604)
Q Consensus       115 ~~GlrIa~lgG~~~~~------~~~~~~~te~d~~~L~~l~---~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~  185 (604)
                      .+|++|++|+......      ......+++++++-|.+..   ......-|+++|.+|....+...     ..  ....
T Consensus       188 ~~~~~~i~Lds~~~~~~~~~~~~~~~g~~~~~ql~wL~~~L~~~~~~~~~~Iv~~H~p~~~~~~~~~-----~~--~~~~  260 (443)
T 2xmo_A          188 SSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQ-----KG--YTIN  260 (443)
T ss_dssp             BSSEEEEECCCBCCTTHHHHTSCCCCBCCCHHHHHHHHHHHHHHHHTTCEEEEECSSBSSCSSCC-------CC--SBCT
T ss_pred             CCCEEEEEeeCCCcCcccccCCCCcCCccCHHHHHHHHHHHHHHHHcCCeEEEEECCCCcccccccc-----cc--cccc
Confidence            4689999998764321      1223456777776665431   11123459999999987632111     01  0134


Q ss_pred             CcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          186 TDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       186 Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                      +...+.+++++.++.++|+||.|...
T Consensus       261 ~~~~l~~ll~~~~v~lvl~GH~H~~~  286 (443)
T 2xmo_A          261 YNQQVIDALTEGAMDFSLSGHIHTQN  286 (443)
T ss_dssp             THHHHHHHHHHTTCCEEEECSSCSCE
T ss_pred             cHHHHHHHHHHcCCeEEEECCcccCc
Confidence            67889999999999999999988753

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*

Probab=98.73  E-value=3.9e-08  Score=104.88  Aligned_cols=188  Identities=13%  Similarity=0.041  Sum_probs=99.4

Q ss_pred             CCCCEEEEEcCCCCCHH------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCC
Q 007415            1 MSPPRILLCGDVLGRLN------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPI   65 (604)
Q Consensus         1 m~~~KILv~GDvhG~~~------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~   65 (604)
                      |..||||+++|+|....            ..++++-....+. .+|+||++||+|....   .+...+.++|......++
T Consensus        18 ~~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~   96 (386)
T 3av0_A           18 GSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNI   96 (386)
T ss_dssp             CCCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            34699999999997621            2233332222233 4899999999986531   222334455543333478


Q ss_pred             cEEEEcCCCCChHHHHHHHhccccccCcccCCc-eecCCEEEcCCCCeEEE--cCcEEEEEecccCCCCCCCCCCCHHHH
Q 007415           66 PTYFIGDYGVGAAKVLLAASKNSANQGFKMDGF-KVTDNLFWLKGSGNFTL--HGLSVAYLSGRQSSEGQQFGTYSQDDV  142 (604)
Q Consensus        66 ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~-ei~~Nl~~Lg~~gv~~~--~GlrIa~lgG~~~~~~~~~~~~te~d~  142 (604)
                      |+|+|.||||.....-. .           ... .+..++..|+...++..  .++.|.+++....        ....++
T Consensus        97 pv~~v~GNHD~~~~~~~-~-----------~~~~~l~~~v~~l~~~~v~~~~~~~v~i~gl~~~~~--------~~~~~~  156 (386)
T 3av0_A           97 KVYIVAGNHEMPRRLGE-E-----------SPLALLKDYVKILDGKDVINVNGEEIFICGTYYHKK--------SKREEM  156 (386)
T ss_dssp             EEEECCCGGGSCSSTTS-C-----------CGGGGGTTTCEECSEEEEEEETTEEEEEEEECCCCS--------TTHHHH
T ss_pred             cEEEEcCCCCCCccccc-c-----------CHHHHHHHHeEEcCCCcEEEeCCCCEEEEeCCCCCH--------HHHHHH
Confidence            99999999986421000 0           000 01122455553333222  3566666654321        112222


Q ss_pred             -HHHHHhhc--CCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccC
Q 007415          143 -DALRALAE--EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV  219 (604)
Q Consensus       143 -~~L~~l~~--~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~  219 (604)
                       +.|..+..  ......|||+|.++.++... .          ....   +..+   -++.|+++||.|.. ...++   
T Consensus       157 ~~~l~~l~~~~~~~~~~Ill~H~~~~~~~~~-~----------~~~~---~~~l---~~~d~v~~GH~H~~-~~~~~---  215 (386)
T 3av0_A          157 LDKLKNFESEAKNYKKKILMLHQGINPYIPL-D----------YELE---HFDL---PKFSYYALGHIHKR-ILERF---  215 (386)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEECCCCTTTSSS-S----------CSSC---GGGS---CCCSEEEECSCCSC-EEEEC---
T ss_pred             HHHHHHhhhhcccCCCEEEEECcCccccCCC-C----------cccC---HHHh---hhCCeEEccCCCCC-ccccC---
Confidence             23332211  12568899999998765210 0          0000   1111   13799999998865 22221   


Q ss_pred             CCcceeEEEEcCCC
Q 007415          220 DAVHVTRFLGLAPV  233 (604)
Q Consensus       220 ~~~~~TRFI~L~~~  233 (604)
                         ..+.+++.|..
T Consensus       216 ---~~~~i~ypGS~  226 (386)
T 3av0_A          216 ---NDGILAYSGST  226 (386)
T ss_dssp             ---SSSEEEECCCS
T ss_pred             ---CCceEEECCcc
Confidence               23677887766

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A

Probab=98.72  E-value=2e-08  Score=104.85  Aligned_cols=219  Identities=11%  Similarity=0.105  Sum_probs=104.3

Q ss_pred             CCCCEEEEEcCCC-C----CH----------HHHHHHHHHHHhhcCCCcEEEEecC-CCCCC---hhhHHHHHHHhcccC
Q 007415            1 MSPPRILLCGDVL-G----RL----------NQLFKRVQSVNKSAGPFDAVLCVGQ-FFPDS---SELLDEFMNYVEGRS   61 (604)
Q Consensus         1 m~~~KILv~GDvh-G----~~----------~~l~~kv~~l~~k~GpfD~vi~~GD-ff~~~---~~~~~~~~~~l~g~~   61 (604)
                      |..||||.++|+| |    +.          ..+++++-....+. .+|+||++|| +|...   ..+...+.+++....
T Consensus        16 ~~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~   94 (336)
T 2q8u_A           16 LKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM   94 (336)
T ss_dssp             CCEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHH
Confidence            4569999999999 8    31          33444444333334 4799999999 87542   122233455554322


Q ss_pred             CCCCcEEEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeE---EE--cCcEEEEEecccCCCCCC--C
Q 007415           62 EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF---TL--HGLSVAYLSGRQSSEGQQ--F  134 (604)
Q Consensus        62 ~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~---~~--~GlrIa~lgG~~~~~~~~--~  134 (604)
                      .. +|+|+|.||||...  +..+..  +       -....+|+++++.....   .+  +++.|.++.-........  .
T Consensus        95 ~~-~pv~~i~GNHD~~~--~~~~~~--~-------l~~~g~nv~v~~~~~~~~~~~~~~~~v~i~glp~~~~~~~~~~~~  162 (336)
T 2q8u_A           95 RT-APVVVLPGNHDWKG--LKLFGN--F-------VTSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNE  162 (336)
T ss_dssp             HH-SCEEECCC--------CHHHHH--H-------HHHHCSSEEECCSSSCEEEECTTSCEEEEEEECCC-------CCS
T ss_pred             hc-CCEEEECCCCCccc--cccHHH--H-------HHhcCCEEEEEecccccCceEEeCCCEEEEECCCCCHHHHHHHhh
Confidence            22 79999999999643  221110  0       00011468877764432   22  346666664322110000  0


Q ss_pred             CCCCHHHHHHH-HHhhc---CCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415          135 GTYSQDDVDAL-RALAE---EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF  210 (604)
Q Consensus       135 ~~~te~d~~~L-~~l~~---~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f  210 (604)
                      ..| ++.+..+ ..+..   ......||++|.++.+.... +..        .......+...+....+.|.++||.|..
T Consensus       163 ~~~-~~~~~~~~~~l~~~~~~~~~~~Ill~H~~~~~~~~~-~~~--------~~~~~~~v~~~l~~~~~d~v~~GH~H~~  232 (336)
T 2q8u_A          163 GDF-RFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGY-AGI--------EQGREIIINRALIPSVVDYAALGHIHSF  232 (336)
T ss_dssp             SHH-HHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC-----------------CCCEECGGGSCTTSSEEEEESCSSC
T ss_pred             HHH-HHHHHHHHHHHHHhccCCCCCEEEEECccccCCCCC-CCc--------cchhhcccCHHHccccCCEEEEccccCc
Confidence            011 1223322 22221   23567899999999876321 100        0000001111122346789999998875


Q ss_pred             ccccccccCCCcceeEEEEcCCCCC----c-ccceeEEEeccCCC
Q 007415          211 YAREPYSNVDAVHVTRFLGLAPVGN----K-EKQKFIHALSPTPA  250 (604)
Q Consensus       211 yEr~Py~~~~~~~~TRFI~L~~~gn----~-~K~Kw~yAf~i~p~  250 (604)
                      ....       . .+++++.|....    . ...|.++-+++++.
T Consensus       233 ~~~~-------~-~~~i~y~GS~~~~s~~e~~~~~~~~lv~i~~~  269 (336)
T 2q8u_A          233 REIQ-------K-QPLTIYPGSLIRIDFGEEADEKGAVFVELKRG  269 (336)
T ss_dssp             EEEE-------E-TTEEEECCCSSCCSGGGTTCCCEEEEEEEETT
T ss_pred             eEeC-------C-CccEEECCCCcCCCccccCCCCEEEEEEEeCC
Confidence            4321       0 146677665421    1 11355555666543

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8

Probab=98.68  E-value=6.4e-08  Score=93.05  Aligned_cols=140  Identities=10%  Similarity=0.059  Sum_probs=81.7

Q ss_pred             CCEEEEEcCCCCCHHH------------HHHHH-HHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEE
Q 007415            3 PPRILLCGDVLGRLNQ------------LFKRV-QSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYF   69 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~------------l~~kv-~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyf   69 (604)
                      .|||++++|+|+....            +.+++ +.+++...+.|+||++||++..... ...+.+++.   .++.|+++
T Consensus         1 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~-~~~~~~~l~---~l~~~~~~   76 (195)
T 1xm7_A            1 NAMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFND-KNEYLRIWK---ALPGRKIL   76 (195)
T ss_dssp             CCCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCC-TTSHHHHHH---HSSSEEEE
T ss_pred             CcEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchh-HHHHHHHHH---HCCCCEEE
Confidence            3789999999954321            22222 2233322468999999999654211 122455553   34568999


Q ss_pred             EcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhh
Q 007415           70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA  149 (604)
Q Consensus        70 v~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~  149 (604)
                      |.||||....   .+.           ..+  ..           +.....                        |..  
T Consensus        77 v~GNhD~~~~---~~~-----------~~~--~~-----------l~~~~~------------------------l~~--  103 (195)
T 1xm7_A           77 VMGNHDKDKE---SLK-----------EYF--DE-----------IYDFYK------------------------IIE--  103 (195)
T ss_dssp             ECCTTCCCHH---HHT-----------TTC--SE-----------EESSEE------------------------EEE--
T ss_pred             EeCCCCCchh---hhh-----------hhh--hc-----------hhHHHH------------------------HHh--
Confidence            9999996421   111           000  00           000000                        000  


Q ss_pred             cCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 007415          150 EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA  212 (604)
Q Consensus       150 ~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyE  212 (604)
                        ..+..|++||-+|.......           ...+...+.+++....+.+.++||.|..+.
T Consensus       104 --~~~~~i~~~H~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~vi~GHtH~~~~  153 (195)
T 1xm7_A          104 --HKGKRILLSHYPAKDPITER-----------YPDRQEMVREIYFKENCDLLIHGHVHWNRE  153 (195)
T ss_dssp             --ETTEEEEEESSCSSCSSCCS-----------CHHHHHHHHHHHHHTTCSEEEECCCCCCSC
T ss_pred             --cCCcEEEEEccCCcCCCccc-----------ccchHHHHHHHHHHcCCcEEEECCcCCCCc
Confidence              02468999999987653210           013467888888889999999999886543

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}

Probab=98.67  E-value=8.1e-09  Score=98.43  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             CEEEEEcCCCC--CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLG--RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG--~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      |||++++|+||  +...+.+.++.+.   .++|+||++||++..      ++.++|..   .+.|+|+|.||||..
T Consensus        23 mri~~iSD~Hg~~~~~~l~~~l~~~~---~~~D~ii~~GD~~~~------~~~~~l~~---~~~~v~~V~GNhD~~   86 (178)
T 2kkn_A           23 KRFLLISDSHVPVRMASLPDEILNSL---KEYDGVIGLGDYVDL------DTVILLEK---FSKEFYGVHGNMDYP   86 (178)
T ss_dssp             EEEEEECCCCBTTTTCCCCHHHHHGG---GGCSEEEESSCBSCH------HHHHHHHH---HTSSEEECCCSSSCG
T ss_pred             eEEEEEecccCCCCHHHHHHHHHHHh---cCCCEEEECCCCCCH------HHHHHHHh---cCCCEEEEECCCCcH
Confidence            79999999997  5444444444433   247999999999752      23444432   236899999999853

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C

Probab=98.64  E-value=6.6e-08  Score=102.97  Aligned_cols=214  Identities=11%  Similarity=0.089  Sum_probs=109.1

Q ss_pred             CEEEEEcCCCCCHH---------------HHHHHHHHHHhhcCCCcEEEEecCCC-CC---ChhhHHHHHHHhcccCCCC
Q 007415            4 PRILLCGDVLGRLN---------------QLFKRVQSVNKSAGPFDAVLCVGQFF-PD---SSELLDEFMNYVEGRSEIP   64 (604)
Q Consensus         4 ~KILv~GDvhG~~~---------------~l~~kv~~l~~k~GpfD~vi~~GDff-~~---~~~~~~~~~~~l~g~~~~p   64 (604)
                      ||||+++|+|....               .+++++..+..+. .+|+||++||+| ..   .......+.+++...... 
T Consensus         1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-   78 (379)
T 3tho_B            1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-   78 (379)
T ss_dssp             CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH-
T ss_pred             CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC-
Confidence            79999999997543               3455555444444 479999999999 42   222223344554433344 


Q ss_pred             CcEEEEcCCCCChH-HHHHHHhccccccCcccCCceecCCEEEcCCCCeEEE---cC--cEEEEEecccCCCCCCCCCCC
Q 007415           65 IPTYFIGDYGVGAA-KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL---HG--LSVAYLSGRQSSEGQQFGTYS  138 (604)
Q Consensus        65 ~ptyfv~GNh~~~~-~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~---~G--lrIa~lgG~~~~~~~~~~~~t  138 (604)
                      +|+|+|.||||... .++..+.            ..+.+|+.++.....+.+   .|  +.|.++.....  ......+.
T Consensus        79 ~~v~~i~GNHD~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~l~~~~G~~v~i~glp~~~~--~~~~~~~~  144 (379)
T 3tho_B           79 APVVVLPGNQDWKGLKLFGNFV------------TSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDE--SEALRKNE  144 (379)
T ss_dssp             SCEEECCCTTSCTTHHHHHHHH------------HTTCSSEEECCSSCCEEEECTTCCEEEEEEECCCCC--C----CHH
T ss_pred             CCEEEEcCCCccccCccccccc------------cccCCcceeecccceEEEEcCCCCEEEEEECCCCCH--HHHhhhhc
Confidence            89999999999542 1222222            113456666654344443   35  55555544322  11111121


Q ss_pred             HHHHH----HHHH---hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415          139 QDDVD----ALRA---LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY  211 (604)
Q Consensus       139 e~d~~----~L~~---l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy  211 (604)
                      .+...    .|..   .......+.|+++|..+.|....+...        .... ..+...+....+.|+++||.|...
T Consensus       145 ~~~~~~l~~~l~~~~~~~~~~~~~~I~l~H~~v~g~~~~~~se--------~~~~-~~v~~~~~~~~~dyvalGH~H~~q  215 (379)
T 3tho_B          145 GDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIE--------QGRE-IIINRALIPSVVDYAALGHIHSFR  215 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSEEEEEEESCBSCCCC---------------CS-CCBCGGGSCTTSSEEEEESCSSCE
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCCeEEEEeccccCCccCCCCc--------cccc-cccCHHHcCcCCCEEEcccccCCe
Confidence            22111    1221   111245688999999987753211100        0000 111111112467999999988762


Q ss_pred             cccccccCCCcceeEEEEcCCCCC----ccc-ceeEEEeccCCC
Q 007415          212 AREPYSNVDAVHVTRFLGLAPVGN----KEK-QKFIHALSPTPA  250 (604)
Q Consensus       212 Er~Py~~~~~~~~TRFI~L~~~gn----~~K-~Kw~yAf~i~p~  250 (604)
                      .     ..   ...+++..|....    ... .|-++-+.+++.
T Consensus       216 ~-----~~---~~~~i~y~GS~~~~~f~E~~~~k~~~lv~~~~~  251 (379)
T 3tho_B          216 E-----IQ---KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRG  251 (379)
T ss_dssp             E-----EE---ETTEEEECCCSSCCSGGGSSSCCEEEEEECCSS
T ss_pred             E-----eC---CCCcEEecCCCCCCCcccccCCCEEEEEEEcCC
Confidence            2     11   1135666665421    112 356666676654

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A

Probab=98.53  E-value=3.7e-07  Score=95.19  Aligned_cols=73  Identities=18%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             CEEEEEcCCCCCHH------------HHHHHHHHHHhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCCcEE
Q 007415            4 PRILLCGDVLGRLN------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPTY   68 (604)
Q Consensus         4 ~KILv~GDvhG~~~------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~---~~~~~~~~~~l~g~~~~p~pty   68 (604)
                      |||++++|+|....            ..++++-.+..+. ..|+||++||+|...   ......+.+++......++|+|
T Consensus         1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~   79 (333)
T 1ii7_A            1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVF   79 (333)
T ss_dssp             CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEE
Confidence            79999999998642            2333433333333 479999999998642   1233344455544344578999


Q ss_pred             EEcCCCCCh
Q 007415           69 FIGDYGVGA   77 (604)
Q Consensus        69 fv~GNh~~~   77 (604)
                      +|.||||..
T Consensus        80 ~v~GNHD~~   88 (333)
T 1ii7_A           80 AIEGNHDRT   88 (333)
T ss_dssp             EECCTTTCC
T ss_pred             EeCCcCCCc
Confidence            999999964

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=98.47  E-value=1.4e-07  Score=91.06  Aligned_cols=84  Identities=6%  Similarity=0.056  Sum_probs=60.5

Q ss_pred             EEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCC------HHHHHHHHHHHH-H-HHHHHHh-----------cCC-
Q 007415          405 IVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTS------PECEKELGRFQN-S-LMMYYKN-----------QGK-  464 (604)
Q Consensus       405 Ivs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~------~~~~~Ei~~~~~-~-L~~~~~~-----------~g~-  464 (604)
                      ||++++.++++++++|.++||+||||++|+.++....      .++..+|..+.. . |.+++..           .|+ 
T Consensus        23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~  102 (204)
T 3sp4_A           23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC  102 (204)
T ss_dssp             EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred             EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence            8999999999999999999999999999999988653      356777777766 4 5555531           121 


Q ss_pred             ceEEEe-eccCCCCeeEEEEEecCc
Q 007415          465 EAVFFE-WLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       465 ~~v~~E-~~~~~~~H~HihvvPvp~  488 (604)
                      ..+-+. -+.....|+|+|||-.+.
T Consensus       103 ~~i~~GfHa~PSm~HLHLHVIS~Df  127 (204)
T 3sp4_A          103 NYIKVGFHAGPSMNNLHLHIMTLDH  127 (204)
T ss_dssp             TTEEEEEESSCSSSSCCEEEEESCC
T ss_pred             eeEeccCCCCCcccceeEEEeccCC
Confidence            122222 133335799999998543

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7

Probab=98.31  E-value=9.1e-07  Score=86.16  Aligned_cols=69  Identities=9%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh-------hHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-------LLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~-------~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |||++++|+||++..+-+.++.+++.  +.|+||++||++.....       ...++.++|.   +++.|+|+|.||||.
T Consensus        26 mki~~iSD~H~~~~~l~~~l~~~~~~--~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~---~~~~~v~~V~GNHD~  100 (208)
T 1su1_A           26 MKLMFASDIHGSLPATERVLELFAQS--GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLN---EVAHKVIAVRGNCDS  100 (208)
T ss_dssp             CEEEEECCCTTBHHHHHHHHHHHHHH--TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHH---TTGGGEEECCCTTCC
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHHhc--CCCEEEECCCccccCcccccccccCHHHHHHHHH---hcCCceEEEECCCch
Confidence            79999999999987666556655443  36999999999753211       1234555653   344799999999996


Q ss_pred             h
Q 007415           77 A   77 (604)
Q Consensus        77 ~   77 (604)
                      .
T Consensus       101 ~  101 (208)
T 1su1_A          101 E  101 (208)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1

Probab=98.28  E-value=1e-05  Score=87.05  Aligned_cols=209  Identities=12%  Similarity=0.048  Sum_probs=111.3

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh------hhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~------~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .+||+++||.|.... ....++.+.+.....|+||++||+.-...      ...+++.+++... ...+|+|++.||||.
T Consensus       126 ~~~f~~~gD~~~~~~-~~~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l-~~~~P~~~v~GNHD~  203 (426)
T 1xzw_A          126 PYVFGLIGDIGQTHD-SNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERS-VAYQPWIWTAGNHEI  203 (426)
T ss_dssp             CEEEEEECSCTTBHH-HHHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHH-HTTSCEECCCCGGGC
T ss_pred             CeEEEEEEeCCCCCc-hHHHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHH-HhcCCEEEecccccc
Confidence            479999999998642 23445555544336899999999974311      1122344444332 236899999999985


Q ss_pred             hHHH-------HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-h
Q 007415           77 AAKV-------LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-L  148 (604)
Q Consensus        77 ~~~~-------l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l  148 (604)
                      ....       +..+.. .+.  .+..+.....+.+     -.+..++++|.+|......     .. ..++.+-|.+ |
T Consensus       204 ~~~~~~~~~~~~~~~~~-~f~--~p~~~~~~~~~~~-----ys~~~g~~~~i~Ldt~~~~-----~~-~~~Q~~WL~~~L  269 (426)
T 1xzw_A          204 DYAPDIGEYQPFVPFTN-RYP--TPHEASGSGDPLW-----YAIKRASAHIIVLSSYSGF-----VK-YSPQYKWFTSEL  269 (426)
T ss_dssp             CCBGGGTBCSTTHHHHH-HSC--CCCGGGTCSSTTS-----EEEEETTEEEEECCTTSCC-----ST-TSHHHHHHHHHH
T ss_pred             ccCCccccccCChhheE-EEe--CCcccCCCCCCCe-----EEEEECCEEEEEeeCcccC-----CC-CHHHHHHHHHHH
Confidence            3210       000000 000  0000000000111     1235678888888753211     11 1333333433 2


Q ss_pred             hc---CCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCC-----
Q 007415          149 AE---EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----  220 (604)
Q Consensus       149 ~~---~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~-----  220 (604)
                      +.   ...+--|+++|.++.........    .+    ..-...+.+++.+.+....|+||.|.+.-..|..+..     
T Consensus       270 ~~~~~~~~~w~Iv~~H~P~~~~~~~~~~----~~----~~~r~~l~~ll~~~~VdlvlsGH~H~~~r~~p~~~~~~~~~~  341 (426)
T 1xzw_A          270 EKVNRSETPWLIVLVHAPLYNSYEAHYM----EG----EAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVN  341 (426)
T ss_dssp             HHCCTTTCCEEEEECSSCSSCCBSTTTT----TT----HHHHHHHHHHHHHTTCSEEEECSSSSEEEECSEECCCCCSTT
T ss_pred             HhhhhcCCCEEEEEeccCceeCCCcccC----CC----HHHHHHHHHHHHHhCCCEEEEcChhhheeeeeecCccccccC
Confidence            22   12345699999998754211000    00    0113456778888999999999998765555654321     


Q ss_pred             -------CcceeEEEEcCCCCC
Q 007415          221 -------AVHVTRFLGLAPVGN  235 (604)
Q Consensus       221 -------~~~~TRFI~L~~~gn  235 (604)
                             ....|.+|.-|.-|+
T Consensus       342 g~~~~~~~~~g~~yi~~G~gG~  363 (426)
T 1xzw_A          342 AKCTPVSDESAPVYITIGDGGN  363 (426)
T ss_dssp             CCCCCEECTTSCEEEEECCSCC
T ss_pred             CccccccCCCccEEEEeCCCcc
Confidence                   124577777777665

>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A

Probab=98.22  E-value=3.1e-05  Score=85.61  Aligned_cols=211  Identities=11%  Similarity=0.027  Sum_probs=109.5

Q ss_pred             CCEEEEEcCCCCCHH----------HHHHHHHHHHhh---cCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCC
Q 007415            3 PPRILLCGDVLGRLN----------QLFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPI   65 (604)
Q Consensus         3 ~~KILv~GDvhG~~~----------~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~   65 (604)
                      .++||.++|+||++.          .+...++++.+.   .++-+++|.+||++......    ...+.+.|+   .++.
T Consensus         8 ~l~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln---~lg~   84 (516)
T 1hp1_A            8 KITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMN---LVGY   84 (516)
T ss_dssp             EEEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHH---HHTC
T ss_pred             EEEEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHh---ccCC
Confidence            378999999999743          333444444332   34568999999987542210    011223332   2333


Q ss_pred             cEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEEcC-------CCCeEEEcCcEEEEEecccCCCCC--C
Q 007415           66 PTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQSSEGQ--Q  133 (604)
Q Consensus        66 ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~~~~~~~--~  133 (604)
                       .+++.||||...  +.+ ..+..        .+-..++.|++.-.       ...+++.+|++|+.+|-.......  .
T Consensus        85 -d~~~~GNHEfd~g~~~l~~~~~~--------~~~~~l~aNv~~~~~g~~~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~  155 (516)
T 1hp1_A           85 -DAMAIGNHEFDNPLTVLRQQEKW--------AKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGN  155 (516)
T ss_dssp             -CEEECCGGGGSSCHHHHHHHHHH--------CSSCEECSSEEETTTTEESSBSEEEEEETTEEEEEEEEECTTTTTSSS
T ss_pred             -CEEeeccccccCCHHHHHHHHhh--------CCCCEEEeEEEECCCCCcccCCeEEEEECCEEEEEEEecccCcccccC
Confidence             488999998532  222 22321        11235677876422       223567899999999876432110  0


Q ss_pred             -----CCCCCH--HHHHH-HHHhhc-CCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEE
Q 007415          134 -----FGTYSQ--DDVDA-LRALAE-EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIA  204 (604)
Q Consensus       134 -----~~~~te--~d~~~-L~~l~~-~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~  204 (604)
                           ...|.+  +.+.. +..+.. ....+=|+|+|...........          ...+...+.+.+...+.-..++
T Consensus       156 p~~~~~~~~~d~~~~~~~~v~~l~~~~~~d~iI~l~H~g~~~~~~~~~----------~~~~~~~la~~~~~~~iDlilg  225 (516)
T 1hp1_A          156 PEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGS----------NAPGDVEMARALPAGSLAMIVG  225 (516)
T ss_dssp             CCSCTTEEECCHHHHHHHHHHHHHHHTCCSEEEEEEESCCCGGGCCTT----------SCCCHHHHHHHSCTTSSSEEEC
T ss_pred             cCccCCcEEeCHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCcccc----------cCchHHHHHHhCCCCceeEEEC
Confidence                 012221  22222 222211 1223447899987755321100          1134443333332234789999


Q ss_pred             ccCCCcccc-------ccccc-----CCCcceeEEEEcCCCCC
Q 007415          205 GSKGVFYAR-------EPYSN-----VDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       205 Gh~~~fyEr-------~Py~~-----~~~~~~TRFI~L~~~gn  235 (604)
                      ||.|..+..       .+|..     ......|-++..|.+|.
T Consensus       226 GHtH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ag~~g~  268 (516)
T 1hp1_A          226 GHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGK  268 (516)
T ss_dssp             CSSCCBCCEEETTEECSSCCTTSCCCCEEETTEEEECBCSTTS
T ss_pred             CCCCcccccCCccccccccCCCccccccCCCCcEEEecChhhh
Confidence            998876542       11110     00123478888888775

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*

Probab=98.15  E-value=1.7e-05  Score=85.26  Aligned_cols=187  Identities=14%  Similarity=0.059  Sum_probs=101.0

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh------hhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~------~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .+||+++||+|..... .+.+..+.+.....|+||++||+.-...      ...+++.+++... ...+|+|++.||||.
T Consensus       119 ~~~f~~igD~~~~~~~-~~~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~-~~~~P~~~v~GNHD~  196 (424)
T 2qfp_A          119 PYTFGLIGDLGQSFDS-NTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERS-VAYQPWIWTAGNHEI  196 (424)
T ss_dssp             CEEEEEECSCTTBHHH-HHHHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHH-HTTSCEEECCCHHHH
T ss_pred             CeEEEEEEeCCCCCCh-HHHHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHH-HhcCCeEeecCCccc
Confidence            5799999999987642 3345555544335799999999975421      1123344444432 235899999999983


Q ss_pred             hH-----------HHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHH
Q 007415           77 AA-----------KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDAL  145 (604)
Q Consensus        77 ~~-----------~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L  145 (604)
                      ..           .+......       +..+.....+++     -.+.+++++|.+|......     ..++ ++.+-|
T Consensus       197 ~~~~~~~~~~~~~~~~~~f~~-------P~~~~~~~~~~~-----ys~~~g~~~~i~Ldt~~~~-----~~~~-~Q~~WL  258 (424)
T 2qfp_A          197 EFAPEINETEPFKPFSYRYHV-------PYEASQSTSPFW-----YSIKRASAHIIVLSSYSAY-----GRGT-PQYTWL  258 (424)
T ss_dssp             CCBGGGTBCSTTHHHHHHCCC-------CGGGGTCSSTTS-----EEEEETTEEEEECCTTSCC-----STTS-HHHHHH
T ss_pred             ccCCcccccccchhhhhhccC-------CccccCCCCCcE-----EEEEECCEEEEEecCCccC-----CCcH-HHHHHH
Confidence            21           00000000       000000000111     1345678888888643211     1223 334434


Q ss_pred             HH-hhcC---CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccc
Q 007415          146 RA-LAEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYS  217 (604)
Q Consensus       146 ~~-l~~~---~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~  217 (604)
                      .+ |+..   ..+.-|+++|.++........    ..+    ..-...+.+++.+.+..+.|+||.|.|--..|..
T Consensus       259 ~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~----~~~----~~~r~~l~~ll~~~~VdlvlsGH~H~y~r~~~~~  326 (424)
T 2qfp_A          259 KKELRKVKRSETPWLIVLMHSPLYNSYNHHF----MEG----EAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVS  326 (424)
T ss_dssp             HHHHHHCCTTTCCEEEEECSSCSSCCBSTTT----TTT----HHHHHHHHHHHHHTTCSEEEECSSSSEEEECSEE
T ss_pred             HHHHhhhcccCCCEEEEEeCcCceecCcccc----ccc----HHHHHHHHHHHHHhCCcEEEECChhhhheecccc
Confidence            43 2221   234579999999875421100    000    0012456678888999999999998754444543

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}

Probab=98.06  E-value=5.6e-06  Score=86.82  Aligned_cols=214  Identities=10%  Similarity=0.005  Sum_probs=109.0

Q ss_pred             CCCEEEEEcCCCCCHH---HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhH----HHHHHHhccc-CCCCCcEEEEc
Q 007415            2 SPPRILLCGDVLGRLN---QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELL----DEFMNYVEGR-SEIPIPTYFIG   71 (604)
Q Consensus         2 ~~~KILv~GDvhG~~~---~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~----~~~~~~l~g~-~~~p~ptyfv~   71 (604)
                      ++++++++||.+....   .+.+.+.++.++. ++|+||.+||++-.+.  ...    +.+.+++... ....+|+|.|.
T Consensus         2 ~~l~f~~igD~g~g~~~q~~va~~m~~~~~~~-~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vl   80 (342)
T 3tgh_A            2 CQLRFASLGDWGKDTKGQILNAKYFKQFIKNE-RVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVL   80 (342)
T ss_dssp             CCEEEEECCSCBSCCHHHHHHHHHHHHHHHHT-TCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECC
T ss_pred             ceEEEEEEecCCCCCchHHHHHHHHHHHHhhc-CCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeC
Confidence            4579999999997432   2333444444444 6899999999864321  111    2233333332 34689999999


Q ss_pred             CCCCChHHHHHHHhccc-------------cccCcccCCceecCCEEEcCCCCeEEE--------cC-----cEEEEEec
Q 007415           72 DYGVGAAKVLLAASKNS-------------ANQGFKMDGFKVTDNLFWLKGSGNFTL--------HG-----LSVAYLSG  125 (604)
Q Consensus        72 GNh~~~~~~l~~l~~~~-------------~~~~~~~~g~ei~~Nl~~Lg~~gv~~~--------~G-----lrIa~lgG  125 (604)
                      ||||-..+...++.-..             ..........|..|+.+|--. ..+++        .|     ++|.+|--
T Consensus        81 GNHD~~~~~~aq~~~~~~~~~~~~~~~~~~~~~~~~~~~rw~~P~~yY~~~-~~f~~~~~~~~~~~g~~~~~v~fi~LDT  159 (342)
T 3tgh_A           81 GTRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADATNYPKWIMPNYWYHYF-THFTVSSGPSIVKTGHKDLAAAFIFIDT  159 (342)
T ss_dssp             CHHHHTSCHHHHHHHHHC---------------CCCSSCEEECSSSSEEEE-EEEEEC---------CEEEEEEEEECCT
T ss_pred             CCCccCCCchHhhhhhhcccccccccccccccccccCCCCccCCcceEEEE-EEeeccccccccccCCCCceEEEEEEeC
Confidence            99984322222221000             000000123466676654210 01111        12     45555532


Q ss_pred             ccCCCCCCCC----CCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCE
Q 007415          126 RQSSEGQQFG----TYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRY  201 (604)
Q Consensus       126 ~~~~~~~~~~----~~te~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrY  201 (604)
                      ........+.    .+.++..+-|.+..+ ....=|++.|.++.......+.          ..-...+..|+.+.+...
T Consensus       160 ~~l~~~~~~~~~~~~~~~~Ql~WLe~~L~-~~~~~IV~~HhP~~~~~~~~~~----------~~l~~~l~~ll~~~~Vdl  228 (342)
T 3tgh_A          160 WVLSSNFPYKKIHEKAWNDLKSQLSVAKK-IADFIIVVGDQPIYSSGYSRGS----------SYLAYYLLPLLKDAEVDL  228 (342)
T ss_dssp             TTTSTTCSCHHHHHHHHHHHHHHHHHHHH-HCSEEEEECSSCSSCSSTTCCC----------HHHHHHTHHHHHHTTCCE
T ss_pred             cccccCCcccccchHHHHHHHHHHHHhhc-cCCcEEEEECCCCCCCCCCCCc----------HHHHHHHHHHHHHcCCCE
Confidence            2111110000    011222222332111 1346689999999865321110          011356778999999999


Q ss_pred             EEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          202 HIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       202 hf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      .|+||.|.+.-..+       ..+.+|..|..|.
T Consensus       229 vlsGH~H~~~~~~~-------~g~~~iv~Ga~g~  255 (342)
T 3tgh_A          229 YISGHDNNMEVIED-------NDMAHITCGSGSM  255 (342)
T ss_dssp             EEECSSSSEEEEEE-------TTEEEEEECCSSC
T ss_pred             EEECCCcceeEEee-------CCcEEEEeCcccc
Confidence            99999886532211       1288888887654

>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}

Probab=97.99  E-value=5.4e-05  Score=83.88  Aligned_cols=205  Identities=8%  Similarity=0.016  Sum_probs=110.2

Q ss_pred             CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhH---------HHHHHHh
Q 007415            3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL---------DEFMNYV   57 (604)
Q Consensus         3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~---------~~~~~~l   57 (604)
                      +++||.++|+||++.                .+...++++.+++ +-.++|.+||++.......         ....+.|
T Consensus        19 ~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~-~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~l   97 (527)
T 3qfk_A           19 NIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQY-DQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFY   97 (527)
T ss_dssp             EEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTS-SEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHH
T ss_pred             cEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcC-CCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHH
Confidence            478999999999863                4555566655443 4457788999976532110         2233444


Q ss_pred             cccCCCCCcEEEEcCCCCCh---HHHHHHHhccccccCcccCCceecCCEEEcC------CCCeEEEcCcEEEEEecccC
Q 007415           58 EGRSEIPIPTYFIGDYGVGA---AKVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTLHGLSVAYLSGRQS  128 (604)
Q Consensus        58 ~g~~~~p~ptyfv~GNh~~~---~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~~~GlrIa~lgG~~~  128 (604)
                         ..+++. +++.||||-.   ..+.+.+..        .+-..++.|+...+      ...+++.+|++|+.+|-...
T Consensus        98 ---n~lg~D-~~t~GNHefd~G~~~l~~~~~~--------~~~p~l~aNv~~~g~p~~~~py~i~e~~G~kIgviG~~~~  165 (527)
T 3qfk_A           98 ---NRMAFD-FGTLGNHEFNYGLPYLKDTLRR--------LNYPVLCANIYENDSTLTDNGVKYFQVGDQTVGVIGLTTQ  165 (527)
T ss_dssp             ---HHTCCC-EECCCGGGGTTCHHHHHHHHHH--------CSSCBCCSSEEETTEESSSCSEEEEEETTEEEEEEEEECT
T ss_pred             ---HhcCCc-EEeccccccccCHHHHHHHHHh--------CCCCEEEeEeeeCCCCccCCCEEEEEECCEEEEEEEeccC
Confidence               234444 6778999843   123333321        12235778887531      22455789999999997643


Q ss_pred             CCCC-C------CCCCC--HHHHHHH-HHhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-
Q 007415          129 SEGQ-Q------FGTYS--QDDVDAL-RALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-  197 (604)
Q Consensus       129 ~~~~-~------~~~~t--e~d~~~L-~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-  197 (604)
                      .... .      ...|.  .+.+.++ ..+. ....+=|+|+| |+.........   +.   ....|.....+|++++ 
T Consensus       166 ~~~~~~~~~~~~g~~~~d~~~~~~~~v~~l~-~~~D~iIvl~H-~G~~~d~~~~~---~~---~~~~~e~~~~~la~~~~  237 (527)
T 3qfk_A          166 FIPHWEQPEHIQSLTFHSAFEILQQYLPEMK-RHADIIVVCYH-GGFEKDLESGT---PT---EVLTGENEGYAMLEAFS  237 (527)
T ss_dssp             TGGGTSCHHHHTTEEECCHHHHHHHHHHHHH-HHCSEEEEEEE-CCCSBCTTTCC---BS---SCCSSSCCHHHHHHHHG
T ss_pred             CcccccCccccCCcEEcCHHHHHHHHHHHHH-hCCCEEEEEeC-cCcccccccCc---cc---cccccchHHHHHHHhcC
Confidence            2110 0      01222  1222221 2221 11234468899 44322100000   00   0012333455677666 


Q ss_pred             -CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          198 -KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       198 -kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                       ..-..++||.|..+..       ....|..+..|.+|.
T Consensus       238 ~giDlIlgGHtH~~~~~-------~v~~~~ivqag~~g~  269 (527)
T 3qfk_A          238 KDIDIFITGHQHRQIAE-------RFKQTAVIQPGTRGT  269 (527)
T ss_dssp             GGCSEEECCSSCCEEEE-------EETTEEEEEECSTTS
T ss_pred             CCCcEEEECCCCcccce-------EECCEEEeccChhhC
Confidence             6789999999876541       233588888888875

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3

Probab=97.93  E-value=6.3e-06  Score=80.57  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      .|||+|+||+||++..+.+.++.+... ...|.||++||+....... .+..+++.     ..++++|.||||.
T Consensus        12 ~~~i~visDiHg~~~~l~~~l~~~~~~-~~~d~~i~~GD~~~~g~~~-~~~~~~l~-----~~~~~~v~GNhd~   78 (221)
T 1g5b_A           12 YRNIWVVGDLHGCYTNLMNKLDTIGFD-NKKDLLISVGDLVDRGAEN-VECLELIT-----FPWFRAVRGNHEQ   78 (221)
T ss_dssp             CSCEEEECCCTTCHHHHHHHHHHHTCC-TTTCEEEECSCCSSSSSCH-HHHHGGGG-----STTEEECCCHHHH
T ss_pred             CceEEEEEcCCCCHHHHHHHHHHccCC-CCCCEEEEeCCccCCCCCh-HHHHHHHh-----cCCEEEEccCcHH
Confidence            489999999999998776666655322 2479999999997643322 23444542     2489999999973

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}

Probab=97.81  E-value=1.2e-05  Score=81.07  Aligned_cols=66  Identities=17%  Similarity=0.284  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      +||+++||+||+++.+.+.++.+.. .++.|.+|++||+........ +..+++..     .++|+|.||||.
T Consensus        19 ~~i~visDiHg~~~~l~~~l~~~~~-~~~~d~ii~~GD~vd~g~~~~-~~l~~l~~-----~~~~~v~GNHd~   84 (262)
T 2qjc_A           19 GRVIIVGDIHGCRAQLEDLLRAVSF-KQGSDTLVAVGDLVNKGPDSF-GVVRLLKR-----LGAYSVLGNHDA   84 (262)
T ss_dssp             SCEEEECCCTTCHHHHHHHHHHHTC-CTTTSEEEECSCCSSSSSCHH-HHHHHHHH-----HTCEECCCHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhc-cCCCCEEEEecCCCCCCCCHH-HHHHHHHH-----CCCEEEeCcChH
Confidence            4999999999999877666655433 224699999999975433222 23444421     479999999974

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}

Probab=97.78  E-value=1e-05  Score=82.40  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      |||+|+||+||++..+...++.+... .+.|.+|++||+..-.+... +..+++.   ..+.++++|.||||.
T Consensus         1 M~i~vigDiHG~~~~l~~ll~~~~~~-~~~d~~v~lGD~vdrG~~s~-~~l~~l~---~l~~~~~~v~GNHe~   68 (280)
T 2dfj_A            1 MATYLIGDVHGCYDELIALLHKVEFT-PGKDTLWLTGDLVARGPGSL-DVLRYVK---SLGDSVRLVLGNHDL   68 (280)
T ss_dssp             -CEEEECCCCSCHHHHHHHHHHTTCC-TTTCEEEECSCCSSSSSCHH-HHHHHHH---HTGGGEEECCCHHHH
T ss_pred             CeEEEEecCCCCHHHHHHHHHHhCCC-CCCCEEEEeCCcCCCCCccH-HHHHHHH---hCCCceEEEECCCcH
Confidence            68999999999998776666654321 23699999999975433222 2344442   234589999999973

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*

Probab=97.70  E-value=9.2e-05  Score=80.27  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCCCH-----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hh----HHHHHHH-------
Q 007415            2 SPPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---EL----LDEFMNY-------   56 (604)
Q Consensus         2 ~~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~----~~~~~~~-------   56 (604)
                      ..||||+++|+|-..           ...++++-.+..+. .+|+||++||+|....   ..    .+.+.+|       
T Consensus        75 ~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~ps~~a~~~~~~~Lr~~~~g~~~~  153 (472)
T 4fbk_A           75 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPC  153 (472)
T ss_dssp             TCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHBSSCCC
T ss_pred             CCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccCCcc
Confidence            468999999999742           12344443333334 4799999999987532   11    2223332       


Q ss_pred             ----hcc------------------cCCCCCcEEEEcCCCCCh
Q 007415           57 ----VEG------------------RSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus        57 ----l~g------------------~~~~p~ptyfv~GNh~~~   77 (604)
                          |+.                  ...+.+|+|+|.||||.+
T Consensus       154 ~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~  196 (472)
T 4fbk_A          154 ELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDP  196 (472)
T ss_dssp             CCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSC
T ss_pred             hheecchhhhhcccccccccccccccccCCCcEEEEecCCCCc
Confidence                221                  124589999999999975

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*

Probab=97.68  E-value=0.00011  Score=78.70  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=46.9

Q ss_pred             CCEEEEEcCCCCCH-----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hh----HHHHHHH--------
Q 007415            3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---EL----LDEFMNY--------   56 (604)
Q Consensus         3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~----~~~~~~~--------   56 (604)
                      .||||.++|+|-..           ...++++-.+..+. .+|+||++||+|....   ..    .+.+.+|        
T Consensus        13 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~~~~g~~~~~   91 (417)
T 4fbw_A           13 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCE   91 (417)
T ss_dssp             CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBSSCCCC
T ss_pred             CeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccCCccc
Confidence            68999999999752           23444444333344 4899999999987532   11    2223332        


Q ss_pred             ---hc------------------ccCCCCCcEEEEcCCCCChH
Q 007415           57 ---VE------------------GRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus        57 ---l~------------------g~~~~p~ptyfv~GNh~~~~   78 (604)
                         |+                  +...+++|+|+|.||||.+.
T Consensus        92 ~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~  134 (417)
T 4fbw_A           92 LELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPS  134 (417)
T ss_dssp             CEECC------------CCGGGCTTBCBSSCEEECCCGGGC--
T ss_pred             ceeccchhhhcccccccccccccccccCCCeEEEEecCCCCcc
Confidence               21                  11245899999999998753

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}

Probab=97.63  E-value=0.0001  Score=79.47  Aligned_cols=74  Identities=18%  Similarity=0.299  Sum_probs=46.7

Q ss_pred             CCEEEEEcCCCCCH-----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhc----------
Q 007415            3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVE----------   58 (604)
Q Consensus         3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~----------   58 (604)
                      .||||+++|+|-..           ...++++-.+..+. .+|+||++||+|....   .....+.+.|.          
T Consensus        32 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~-~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~~  110 (431)
T 3t1i_A           32 TFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN-EVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQ  110 (431)
T ss_dssp             EEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCCC
T ss_pred             CEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc-CCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCccc
Confidence            48999999999532           12344443333344 4799999999986532   22222333322          


Q ss_pred             -----------------------ccCCCCCcEEEEcCCCCCh
Q 007415           59 -----------------------GRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus        59 -----------------------g~~~~p~ptyfv~GNh~~~   77 (604)
                                             ....+++|+|+|.||||.+
T Consensus       111 ~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~  152 (431)
T 3t1i_A          111 FEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDP  152 (431)
T ss_dssp             CEECSCC------------------CCBCSCEEECCCSSSCC
T ss_pred             ceeccchhhccccccccccccccccccCCCcEEEEccCCCCc
Confidence                                   1124689999999999976

>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*

Probab=97.63  E-value=0.0016  Score=71.77  Aligned_cols=203  Identities=14%  Similarity=0.105  Sum_probs=104.2

Q ss_pred             CEEEEEcCCCCCHH------------------HHHHHHHHHHhhcCCCcEEEE-ecCCCCCChh----hHHHHHHHhccc
Q 007415            4 PRILLCGDVLGRLN------------------QLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSE----LLDEFMNYVEGR   60 (604)
Q Consensus         4 ~KILv~GDvhG~~~------------------~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~----~~~~~~~~l~g~   60 (604)
                      ++||.++|+||++.                  .+...++.+.+++  .+.|++ +||++.....    ....+.+.|   
T Consensus         7 l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~--~~~llldaGD~~~g~~~~~~~~g~~~~~~l---   81 (509)
T 3ive_A            7 VTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKN--KATWFFDAGDYFTGPYISSLTKGKAIIDIM---   81 (509)
T ss_dssp             EEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHC--SSEEEEECSCCSSSSHHHHTTTTHHHHHHH---
T ss_pred             EEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcC--CCeEEEECCCCCCCchhhhhcCChHHHHHH---
Confidence            78999999998753                  4445555555443  366666 9998764210    011233444   


Q ss_pred             CCCCCcEEEEcCCCCCh---HHHHHHHhccccccCcccCCceecCCEEEcC--------CCCeEEEcCcEEEEEecccCC
Q 007415           61 SEIPIPTYFIGDYGVGA---AKVLLAASKNSANQGFKMDGFKVTDNLFWLK--------GSGNFTLHGLSVAYLSGRQSS  129 (604)
Q Consensus        61 ~~~p~ptyfv~GNh~~~---~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg--------~~gv~~~~GlrIa~lgG~~~~  129 (604)
                      ..++.. +++.||||-.   ..+.+.+..        .+-..++.|++.-.        ..-|++.+|++|+.+|-....
T Consensus        82 n~lg~D-~~tlGNHEfd~G~~~l~~~l~~--------~~~p~l~aNv~~~~~~~p~~~~py~i~e~~G~kIgiiG~t~~~  152 (509)
T 3ive_A           82 NTMPFD-AVTIGNHEFDHGWDNTLLQLSQ--------AKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGVF  152 (509)
T ss_dssp             TTSCCS-EECCCGGGGTTCHHHHHHHHTT--------CSSCBCCCSEEETTSCCBSSSCSEEEEEETTEEEEEEEEECHH
T ss_pred             HhcCCc-EEeecccccccCHHHHHHHHhh--------CCCCEEEEEEEECCCCCccCcCCeEEEEECCEEEEEEecccCc
Confidence            334443 6778999943   233343431        11235778887532        123557899999999975320


Q ss_pred             -------CCC-CCCCCCH--HHHHH-HHHhhcCCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHH
Q 007415          130 -------EGQ-QFGTYSQ--DDVDA-LRALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAE  196 (604)
Q Consensus       130 -------~~~-~~~~~te--~d~~~-L~~l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~  196 (604)
                             ... ....|.+  +.+.. +..+.   ..+|  |+|+|.--..-.. ..      +......|...-.+++++
T Consensus       153 ~~~~~~~~~~~~g~~~~d~~~~~~~~v~~Lk---~~~D~iIvl~H~G~~~~~~-~~------~~~~~~~~~~~d~~la~~  222 (509)
T 3ive_A          153 AFNDTVSAATRVGIEARDEIKWLQRYIDELK---GKVDLTVALIHEGVPARQS-SM------GGTDVRRALDKDIQTASQ  222 (509)
T ss_dssp             HHHHHSCGGGCTTEEECCHHHHHHHHHHHHT---TTCSEEEEEEECSSCCCCC-CC---------CCCCCCHHHHHHHHH
T ss_pred             ccccccccccCCCCEEcCHHHHHHHHHHHHH---hcCCEEEEEeccCcCCccc-cc------cccccccccchHHHHHhc
Confidence                   000 0112222  22222 22232   2255  4788864211100 00      000112344444566666


Q ss_pred             h-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          197 I-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       197 l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      + ..-..++||.|..+.. |-.    ...|-.+..|.+|.
T Consensus       223 ~~giDlIlgGHtH~~~~~-~~~----~~~~~ivqag~~g~  257 (509)
T 3ive_A          223 VKGLDILITGHAHVGTPE-PIK----VGNTLILSTDSGGI  257 (509)
T ss_dssp             CSSCCEEEEESSCCCCSS-CEE----ETTEEEECCCSTTS
T ss_pred             CCCCcEEEeCCcCccCCC-Cee----eCCEEEEecChhhc
Confidence            5 3568999998865331 111    22366677666664

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=97.59  E-value=0.00047  Score=72.40  Aligned_cols=111  Identities=12%  Similarity=0.117  Sum_probs=74.0

Q ss_pred             CCcccCCCCCCCcceEEE-----ECCEEEEEecCCCCCC------------C-----------eEEEEeccccCCCCCCC
Q 007415          390 ECWFCLSSPSVESHLIVS-----VGEYYYCALPKGPLVE------------D-----------HVLVIPVEHVPNTISTS  441 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs-----~g~~~yl~l~kgpl~~------------G-----------H~LIiP~~H~~s~~~l~  441 (604)
                      .|+||-.+......-|..     .+-.++++.+++|..+            |           +++|.+-+|..++.+|+
T Consensus        62 ~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ls  141 (351)
T 1z84_A           62 SCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDID  141 (351)
T ss_dssp             CCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGGSC
T ss_pred             CCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHHCC
Confidence            699999775432222322     3567899999999873            5           88999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHhcCC-ceEEEe---eccCC-CCeeEEEEEecCcc------hHHHHHHHHHH
Q 007415          442 PECEKELGRF-QNSLMMYYKNQGK-EAVFFE---WLSKR-GTHANLQAVPIPTS------KAAAVQDIFNL  500 (604)
Q Consensus       442 ~~~~~Ei~~~-~~~L~~~~~~~g~-~~v~~E---~~~~~-~~H~HihvvPvp~~------~~~~~~~~f~~  500 (604)
                      .+.+.++..+ ++.++.+.+..+. -+.+||   ..++. ..|.|.|++-.|.-      ....+..||++
T Consensus       142 ~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a~~~~p~~~~~e~~~~~~y~~~  212 (351)
T 1z84_A          142 PVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYFEE  212 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEecCcCChHHHHHHHHHHHHHhh
Confidence            9998888865 4445444433344 455666   22233 47999999875542      22345666655

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A

Probab=97.52  E-value=0.00011  Score=75.80  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g-~~~~p~ptyfv~GNh~~~   77 (604)
                      .+||.|+||+||++..|.+.++..... ..-+.+|++||+..-++...+-+ .+|.. ....|-.++++-||||..
T Consensus        59 ~~ri~viGDIHG~~~~L~~ll~~~g~~-~~~~~~vflGD~VDRG~~s~evl-~lL~~lk~~~p~~v~~lrGNHE~~  132 (315)
T 3h63_A           59 TEKITVCGDTHGQFYDLLNIFELNGLP-SETNPYIFNGDFVDRGSFSVEVI-LTLFGFKLLYPDHFHLLRGNHETD  132 (315)
T ss_dssp             TCEEEEECCCTTCHHHHHHHHHHHCCC-BTTBCEEEESCCSSSSTTHHHHH-HHHHHHHHHSTTTEEEECCTTSSH
T ss_pred             CceEEEEecCCCCHHHHHHHHHHhCCC-CCCCEEEEeCCccCCCcChHHHH-HHHHHhhhhcCCcEEEEecCcccc
Confidence            378999999999999887766543221 12356999999976544333323 33322 123456799999999964

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.00014  Score=75.78  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .|||.||||+||++..|.+.++.+.. ...-+.+|++||+..-++...+.+.-++.-....|-.++++-||||..
T Consensus        63 ~~ri~viGDIHG~~~~L~~ll~~~g~-~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~  136 (335)
T 3icf_A           63 DVKISVCGDTHGQFYDVLNLFRKFGK-VGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESD  136 (335)
T ss_dssp             TCEEEEECCCTTCHHHHHHHHHHHCC-CBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred             CceEEEEecCCCCHHHHHHHHHHcCC-CCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhh
Confidence            47899999999999988766654322 112356999999976544333333222221233456799999999963

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.45  E-value=0.00013  Score=79.63  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .|||+||||+||++..+...++.+.. .++-|.+|++||+..-++...+.+.-++.-....|-.++++.||||..
T Consensus       212 ~~~~~vigDiHG~~~~l~~~l~~~~~-~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~  285 (477)
T 1wao_1          212 TEKITVCGDTHGQFYDLLNIFELNGL-PSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD  285 (477)
T ss_dssp             SCEEEEECBCTTCHHHHHHHHHHHCC-CBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred             CcceEEEeCCCCCHHHHHHHHHHcCC-CCCcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHH
Confidence            37899999999999888766654321 122467999999975543323333222221233467899999999963

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*

Probab=97.44  E-value=0.00011  Score=75.95  Aligned_cols=72  Identities=14%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g-~~~~p~ptyfv~GNh~~~   77 (604)
                      .++|.|+||+||++..+.+.++.+..  .+.|.+|++||+..-++...+ ...+|.. ....|-.++++.||||..
T Consensus        49 ~~~i~viGDIHG~~~~L~~ll~~~~~--~~~~~~vflGD~VDRG~~s~e-vl~lL~~lk~~~p~~v~~lrGNHE~~  121 (309)
T 2ie4_C           49 RCPVTVCGDVHGQFHDLMELFRIGGK--SPDTNYLFMGDYVDRGYYSVE-TVTLLVALKVRYRERITILRGNHESR  121 (309)
T ss_dssp             CSSEEEECCCTTCHHHHHHHHHHHCC--TTTSCEEECSCCSSSSTTHHH-HHHHHHHHHHHCTTTEEECCCTTSST
T ss_pred             cCCEEEEecCCCCHHHHHHHHHHcCC--CCCCEEEEeCCccCCCCChHH-HHHHHHHHHhhCCCcEEEEeCCCCHH
Confidence            36899999999999987766654321  246788999999765443333 2333322 123456799999999964

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A

Probab=97.42  E-value=8.5e-05  Score=77.78  Aligned_cols=73  Identities=10%  Similarity=0.079  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhc------CCCcEEEEecCCCCCChhhHHHHHHHhcccC----CCCCcEEEEcC
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSA------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRS----EIPIPTYFIGD   72 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~----~~p~ptyfv~G   72 (604)
                      .|||+|+||+||++..+...++.+..-.      ...|.+|++||+..-++... +..++|....    ..|..++++.|
T Consensus        70 ~~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~-evl~~l~~l~~~~~~~~~~v~~v~G  148 (342)
T 2z72_A           70 IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVN-EVLWFMYQLDQQARDAGGMVHLLMG  148 (342)
T ss_dssp             CCEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHH-HHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHH-HHHHHHHHHHHHHhhCCCeEEEEec
Confidence            4799999999999987765555432110      13699999999975433222 2333332211    35678999999


Q ss_pred             CCCC
Q 007415           73 YGVG   76 (604)
Q Consensus        73 Nh~~   76 (604)
                      |||.
T Consensus       149 NHE~  152 (342)
T 2z72_A          149 NHEQ  152 (342)
T ss_dssp             HHHH
T ss_pred             CCcH
Confidence            9984

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3

Probab=97.39  E-value=0.00012  Score=76.26  Aligned_cols=72  Identities=15%  Similarity=0.301  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g-~~~~p~ptyfv~GNh~~~   77 (604)
                      .++|+||||+||++..|.+.++.+..  .+.|.+|++||+..-++...+ ...+|.. ....|-.++++-||||..
T Consensus        56 ~~~i~viGDIHG~~~~L~~ll~~~g~--~~~~~~vflGD~VDRG~~s~e-vl~lL~~lk~~~p~~v~~lrGNHE~~  128 (330)
T 1fjm_A           56 EAPLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLE-TICLLLAYKIKYPENFFLLRGNHECA  128 (330)
T ss_dssp             CSSEEEECBCTTCHHHHHHHHHHHCS--TTSSCEEECSCCSSSSSCHHH-HHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             cCceEEecCCCCCHHHHHHHHHHhCC--CCcceEEeCCCcCCCCCChHH-HHHHHHHhhhhcCCceEEecCCchHh
Confidence            36899999999999988766664422  246889999999754433233 2333322 123456799999999964

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*

Probab=97.29  E-value=0.00019  Score=73.62  Aligned_cols=72  Identities=15%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g-~~~~p~ptyfv~GNh~~~   77 (604)
                      .++|.|+||+||++..+.+.++.+.. . +.|.+|++||+..-++...+.+ .+|.. ....|-.++++-||||..
T Consensus        55 ~~~i~viGDIHG~~~~L~~ll~~~g~-~-~~~~~vfLGD~VDrG~~s~evl-~lL~~lk~~~p~~v~~lrGNHE~~  127 (299)
T 3e7a_A           55 EAPLKICGDIHGQYYDLLRLFEYGGF-P-PESNYLFLGDYVDRGKQSLETI-CLLLAYKIKYPENFFLLRGNHECA  127 (299)
T ss_dssp             CSSEEEECBCTTCHHHHHHHHHHHCS-T-TSSCEEECSCCSSSSSCHHHHH-HHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHHhCC-C-CCccEEeCCcccCCCCCcHHHH-HHHHHHHhhCCCcEEEEecCchhh
Confidence            35799999999999988766654321 1 4678999999976544333322 33222 234566799999999964

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3

Probab=97.22  E-value=0.00026  Score=77.14  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCCcEEEEcCCCCCh
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g-~~~~p~ptyfv~GNh~~~   77 (604)
                      .++|.||||+||++..|...++ +.. ..+.|.+|++||+..-++...+- ..+|.. ....|-.++++-||||..
T Consensus        82 ~~pI~VIGDIHGq~~dL~~LL~-~~g-~p~~d~yVFLGDyVDRGp~S~Ev-l~lL~aLk~~~P~~v~lLRGNHE~~  154 (521)
T 1aui_A           82 DAPVTVCGDIHGQFFDLMKLFE-VGG-SPANTRYLFLGDYVDRGYFSIEC-VLYLWALKILYPKTLFLLRGNHECR  154 (521)
T ss_dssp             CSSEEEECCCTTCHHHHHHHHH-HHC-CTTTCCEEECSCCSSSSSCHHHH-HHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             ccceeeccCCCCCHHHHHHHHH-hcC-CCCcceEEEcCCcCCCCCCHHHH-HHHHHHHhhhCCCeEEEecCCccHH
Confidence            3689999999999998876655 222 22568999999997654332222 233321 123455699999999964

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A

Probab=97.15  E-value=0.00035  Score=73.10  Aligned_cols=72  Identities=13%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      ++|.|+||+||++..|.+.++.. . ..+.|.+|++||+..-+....+.+.-++.-....|-.++++-||||..
T Consensus        70 ~pi~ViGDIHG~~~dL~~ll~~~-g-~~~~~~~vfLGD~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~  141 (357)
T 3ll8_A           70 APVTVCGDIHGQFFDLMKLFEVG-G-SPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR  141 (357)
T ss_dssp             SSEEEECCCTTCHHHHHHHHHHH-C-CTTTCCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred             ccceeeccCCCCHHHHHHHHHhc-C-CCCCcEEEECCCccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhh
Confidence            57999999999998887655432 1 124688999999976544333323222221233456699999999964

>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A

Probab=96.88  E-value=0.021  Score=63.61  Aligned_cols=162  Identities=10%  Similarity=0.036  Sum_probs=82.0

Q ss_pred             Cc-EEEEecCCCCCChhh----HHHHHHHhcccCCCCCcEEEEcCCCCChH---HHHHHHhccccccCcccCCceecCCE
Q 007415           33 FD-AVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNL  104 (604)
Q Consensus        33 fD-~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv~GNh~~~~---~~l~~l~~~~~~~~~~~~g~ei~~Nl  104 (604)
                      .| ++|.+||++......    -....+++   ..++.+. ++ ||||...   .+...+..        .+-..++.|+
T Consensus       123 pd~Lll~~GD~~~gs~~~~~~~g~~~~~~l---n~lg~d~-~~-GNHEfd~G~~~l~~~l~~--------~~~p~L~aNv  189 (562)
T 2wdc_A          123 GKALVLDGGDTWTNSGLSLLTRGEAVVRWQ---NLVGVDH-MV-SHWEWTLGRERVEELLGL--------FRGEFLSYNI  189 (562)
T ss_dssp             CCEEEEECSCCSSSSHHHHHHTTHHHHHHH---HHHTCCE-EC-CSGGGGGCHHHHHHHHHH--------CCSEECCSSC
T ss_pred             CCEEEEeCCCCCCcchhhhhhCCHHHHHHH---HhhCCcE-Ee-cchhcccCHHHHHHHHHh--------CCCCEEEEEE
Confidence            46 899999997643210    01223444   2345665 47 9999532   22233321        1223466677


Q ss_pred             EEcC-------CCCeEEEcCcEEEEEecccCCCC---C----CCCCCC--HHHHHHHH-HhhcCCCCccEEEeCCCCccc
Q 007415          105 FWLK-------GSGNFTLHGLSVAYLSGRQSSEG---Q----QFGTYS--QDDVDALR-ALAEEPGIVDLFLTNEWPSGV  167 (604)
Q Consensus       105 ~~Lg-------~~gv~~~~GlrIa~lgG~~~~~~---~----~~~~~t--e~d~~~L~-~l~~~~~~vDILLTh~wP~gi  167 (604)
                      ..-.       ..-+++++|++|+.+|-......   .    ....|.  .+.+.... .+......+=|+|+|.... .
T Consensus       190 ~~~~~~~~~~~py~i~e~~G~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~d~iIvLsH~g~~-~  268 (562)
T 2wdc_A          190 VDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQ-L  268 (562)
T ss_dssp             EETTTCCBSSCSEEEEEETTEEEEEEEECCTTHHHHSCGGGGTTEECCCCHHHHHHHHHHHHHTTCSEEEEEECSCHH-H
T ss_pred             EecCCCCcccCCeEEEEECCeEEEEEeeccCcccccccccccCCcEEeCHHHHHHHHHHHHHHCCCCEEEEEeCCCCc-c
Confidence            6431       12355789999999996543100   0    001222  23343322 2221122344788885422 1


Q ss_pred             cccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          168 TNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                          +                  .++++++ ..-..++||.|..+... ..    ...|-.+.-|.+|+
T Consensus       269 ----d------------------~~la~~~~giDlIlgGHtH~~~~~~-~~----~~~t~vvqag~~g~  310 (562)
T 2wdc_A          269 ----D------------------AALAERIRGIDLILSGHTHDLTPRP-WR----VGKTWIVAGSAAGK  310 (562)
T ss_dssp             ----H------------------HHHHTTSSSCCEEEECSSCCCCSSC-EE----ETTEEEEECCSTTC
T ss_pred             ----h------------------HHHHhcCCCCcEEEeCCCCCCCccC-EE----ECCEEEEecCcccc
Confidence                0                  1233332 45689999988765321 11    12477787888775

>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2

Probab=96.82  E-value=0.087  Score=58.49  Aligned_cols=205  Identities=9%  Similarity=-0.071  Sum_probs=106.5

Q ss_pred             CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCc-EEEEecCCCCCChhh------HHHHHHHhcc
Q 007415            3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFD-AVLCVGQFFPDSSEL------LDEFMNYVEG   59 (604)
Q Consensus         3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD-~vi~~GDff~~~~~~------~~~~~~~l~g   59 (604)
                      .++||.++|+||++.                .+...++++.++.++ | ++|-+||++....-.      -....+.|  
T Consensus        15 ~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~-~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~l--   91 (557)
T 3c9f_A           15 DINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQ-DLLLIDSGDRHDGNGLSDITSPNGLKSTPIF--   91 (557)
T ss_dssp             SEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTC-EEEEEECSCCCSSCHHHHSSSSTTTTTHHHH--
T ss_pred             EEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCccchhhcccCCHHHHHHH--
Confidence            478999999999753                333444443323444 5 678999987542100      00122333  


Q ss_pred             cCCCCCcEEEEcCCCCChHH------HHHHHhccccccCcccCCceecCCEEEcC----------CCCeEEE--cCcEEE
Q 007415           60 RSEIPIPTYFIGDYGVGAAK------VLLAASKNSANQGFKMDGFKVTDNLFWLK----------GSGNFTL--HGLSVA  121 (604)
Q Consensus        60 ~~~~p~ptyfv~GNh~~~~~------~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg----------~~gv~~~--~GlrIa  121 (604)
                       ..+++. +++.||||....      +...+..        .+...++.|+.+..          +..++++  +|+||+
T Consensus        92 -n~lg~D-a~tlGNHEfD~G~~~l~~~~~~l~~--------a~fp~L~ANv~~~~~~g~~~~~~~py~I~e~~~~G~kIg  161 (557)
T 3c9f_A           92 -IKQDYD-LLTIGNHELYLWENSKQEYETVVNH--------FQDKYVCSNVDIRLDNGLFVPLGLKYKYFTTPIRGIRVM  161 (557)
T ss_dssp             -TTSCCS-EECCCGGGSSSHHHHHHHHHHHHHH--------TTTTBBCSSEEEECTTSCEEESSBSCEEEECTTTCCEEE
T ss_pred             -HhcCCC-EEeecchhcccchHHHHHHHHHHHh--------CCCCEEEeecccccccCCccccCCCeEEEEEccCCEEEE
Confidence             345544 567899997532      2222221        12245777887532          2345677  899999


Q ss_pred             EEecccCCCCC-CCCCC-CHHH-HH--HHHHhhcCCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHH
Q 007415          122 YLSGRQSSEGQ-QFGTY-SQDD-VD--ALRALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV  194 (604)
Q Consensus       122 ~lgG~~~~~~~-~~~~~-te~d-~~--~L~~l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~  194 (604)
                      .+|=....... ....+ .+.+ +.  .+..+.  ..++|  |+|+|..-.+-.   +           .. ......|+
T Consensus       162 iiGlt~~~~~~~~~~~~~d~~e~i~~~~v~~l~--~~~~D~IIvL~H~G~~~~~---d-----------~~-~~~~~~lA  224 (557)
T 3c9f_A          162 AFGFLFDFKRFNSGTRVTPMAETIHEPWFQEAL--KHEVDLIIIVGHTPISHNW---G-----------EF-YQVHQYLR  224 (557)
T ss_dssp             EEECCCCCCCCCTTEEECCHHHHTTSHHHHHHT--TSCCSEEEEECSSCCCTTT---C-----------HH-HHHHHHHH
T ss_pred             EEEeecCCCCCCCCcEECCHHHHHHHHHHHHHH--hcCCCEEEEecccCccccC---c-----------cc-cHHHHHHH
Confidence            99876432111 01123 2222 12  233322  23566  567774321110   0           01 22334455


Q ss_pred             HHhCCC---EEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415          195 AEIKPR---YHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP  249 (604)
Q Consensus       195 ~~lkPr---Yhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p  249 (604)
                      +.+ |-   ..+.||.|.... .+|.+     .|-.+..|.+|.     ++--++|+-
T Consensus       225 ~~~-~giDilIlgGHtH~~~~-~~~~~-----~t~ivqaG~~g~-----~lG~l~l~~  270 (557)
T 3c9f_A          225 QFF-PDTIIQYFGGHSHIRDF-TVFDS-----LSTGLQSGRYCE-----TVGWTSVNL  270 (557)
T ss_dssp             HHC-TTSEEEEEECSSCCEEE-EEEET-----TEEEEEECSTTS-----EEEEEEECC
T ss_pred             HhC-CCCCEEEECCCCCCCCc-ceecC-----CeEeeeccchhc-----EEEEEEEEE
Confidence            544 44   478999887632 33432     366677777764     555555553

>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*

Probab=96.60  E-value=0.007  Score=67.21  Aligned_cols=114  Identities=14%  Similarity=0.063  Sum_probs=68.4

Q ss_pred             CEEEEEcCCCCCH--------------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcc
Q 007415            4 PRILLCGDVLGRL--------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEG   59 (604)
Q Consensus         4 ~KILv~GDvhG~~--------------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g   59 (604)
                      ++||.++|+||++                    ..+...++++.+++ |-+++|.+||++......    ...+.+.|+ 
T Consensus        26 l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~-~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln-  103 (546)
T 4h2g_A           26 LTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAE-PNVLLLDAGDQYQGTIWFTVYKGAEVAHFMN-  103 (546)
T ss_dssp             EEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHC-SSEEEEECSCCSSSSHHHHHHTTHHHHHHHH-
T ss_pred             EEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhC-CCEEEEECCccCCCchhhhhhCChHHHHHHH-
Confidence            6899999999864                    44566666665554 558999999987653210    012233332 


Q ss_pred             cCCCCCcEEEEcCCCCChHHHHHHHh-ccccccCcccCCceecCCEEEcC-----------CCCeEEEcCcEEEEEeccc
Q 007415           60 RSEIPIPTYFIGDYGVGAAKVLLAAS-KNSANQGFKMDGFKVTDNLFWLK-----------GSGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        60 ~~~~p~ptyfv~GNh~~~~~~l~~l~-~~~~~~~~~~~g~ei~~Nl~~Lg-----------~~gv~~~~GlrIa~lgG~~  127 (604)
                        .+++. +++.||||-... .+.+. .....    .+-..++.|+...+           ..-|++.+|++|+.+|=..
T Consensus       104 --~lg~d-~~~~GNHEfd~g-~~~l~~~~~~~----~~~~~l~aNv~~~~~~~p~~~~~~~~~~i~~~~G~kIgiiG~~~  175 (546)
T 4h2g_A          104 --ALRYD-AMALGNHEFDNG-VEGLIEPLLKE----AKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTS  175 (546)
T ss_dssp             --HHTCS-EEECCGGGGTTH-HHHHHTTTTTT----CSSCEECSSEEECHHHHHHHBTTBBSEEEEEETTEEEEEEEEEC
T ss_pred             --hcCCc-EEeccCcccccC-HHHHHHHHHhh----cCCCEEEEEeecCCCCCccccccCCCeEEEEECCEEEEEEEecc
Confidence              33333 688999985322 12221 10000    12246788887543           2345578999999998653

>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2

Probab=96.11  E-value=0.025  Score=62.78  Aligned_cols=112  Identities=10%  Similarity=-0.073  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCCH-----------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccC
Q 007415            3 PPRILLCGDVLGRL-----------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRS   61 (604)
Q Consensus         3 ~~KILv~GDvhG~~-----------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~   61 (604)
                      .++||.++|+||++                 ..+...++++.+++ |-.++|..||++......    ...+.+.|+   
T Consensus        29 ~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~-~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln---  104 (552)
T 2z1a_A           29 TLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARA-KNPLFLDAGDVFQGTLYFNQYRGLADRYFMH---  104 (552)
T ss_dssp             EEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHS-SSEEEEECSCCSSSSHHHHHHTTHHHHHHHH---
T ss_pred             eEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCcHHHHHhCCcHHHHHHH---
Confidence            37899999999864                 35555666665554 434889999987643210    112233442   


Q ss_pred             CCCCcEEEEcCCCCChH---HHHHHHhccccccCcccCCceecCCEEEcC---------CCCeEEEcCcEEEEEeccc
Q 007415           62 EIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        62 ~~p~ptyfv~GNh~~~~---~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~  127 (604)
                      .++. .+++.||||-..   .+...+..        .+-..++.|+..-+         ..-+++.+|.+|+.+|=..
T Consensus       105 ~lg~-d~~~lGNHEfd~g~~~l~~~l~~--------~~~~~L~aNv~~~~~~~~~~~~~~~~i~~~~G~kIgiiG~~~  173 (552)
T 2z1a_A          105 RLRY-RAMALGNHEFDLGPGPLADFLKG--------ARFKVVSANVDASREPRLKGLFAPYAVVVVGGERVGIIGLTT  173 (552)
T ss_dssp             HTTC-CEEECCGGGGTTCHHHHHHHHTT--------CCSEEECTTEECTTCGGGTTSCBSEEEEEETTEEEEEEEEEC
T ss_pred             hcCC-CccccccccccCCHHHHHHHHhh--------CCCCEEEEEEecCCCcccccccCCeEEEEECCEEEEEEEecc
Confidence            3333 488999998542   23333331        12235667876422         1225567899999998653

>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9

Probab=96.05  E-value=0.006  Score=61.86  Aligned_cols=116  Identities=14%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCCCCCH--HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415            1 MSPPRILLCGDVLGRL--NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA   78 (604)
Q Consensus         1 m~~~KILv~GDvhG~~--~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~   78 (604)
                      |.+||||++||+||+.  ..+...+.++.++.. .|++|+-||-+...........+.|   ..+++. ..+.|||+-+.
T Consensus         2 ~~~m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~-~d~vi~Ngen~~gG~g~~~~~~~~l---n~~G~D-a~TlGNHefD~   76 (281)
T 1t71_A            2 MNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQ-ADLVIVNAENTTHGKGLSLKHYEFL---KEAGVN-YITMGNHTWFQ   76 (281)
T ss_dssp             CCCCEEEEECEEBHHHHHHHHHTTHHHHHHHHT-CSEEEEECTBTTTTSSCCHHHHHHH---HHHTCC-EEECCTTTTCC
T ss_pred             cceEEEEEECCcCChHHHHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCcCHHHHHHH---HhcCCC-EEEEccCcccC
Confidence            7789999999999974  344555666655543 5899999886322110001122333   223344 34558999653


Q ss_pred             H--HHHHHhccc--cccCcccCCceecCCEEEcCC-CCeEEEcCcEEEEEecc
Q 007415           79 K--VLLAASKNS--ANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        79 ~--~l~~l~~~~--~~~~~~~~g~ei~~Nl~~Lg~-~gv~~~~GlrIa~lgG~  126 (604)
                      .  ++..+....  ...+|+.    .+.|.. .++ ..|++.+|++|+.+|=.
T Consensus        77 g~~~~~~l~~~~~v~~aN~p~----~~~~~~-~g~g~~I~e~~G~kIgVIgl~  124 (281)
T 1t71_A           77 KLDLAVVINKKDLVRPLNLDT----SFAFHN-LGQGSLVFEFNKAKIRITNLL  124 (281)
T ss_dssp             GGGHHHHTTCTTEECBSCBCT----TSTTTT-SSBSEEEEECSSCEEEEEEEE
T ss_pred             CccHHHHhhhcCEEeeccCCc----cccccc-CCCCeEEEEECCEEEEEEEee
Confidence            3  333332100  0001110    111110 122 23557899999998844

>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*

Probab=95.96  E-value=0.037  Score=61.80  Aligned_cols=110  Identities=16%  Similarity=0.027  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCCCHH---------------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhc
Q 007415            4 PRILLCGDVLGRLN---------------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVE   58 (604)
Q Consensus         4 ~KILv~GDvhG~~~---------------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~   58 (604)
                      ++||.++|+||++.                     .+...++.+.+++ +-.++|..||++.....    .-....+.|+
T Consensus        13 l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln   91 (579)
T 3ztv_A           13 LSILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKY-KNPLVLHAGDAITGTLYFTLFGGSADAAVMN   91 (579)
T ss_dssp             EEEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHS-SSEEEEECSCCSCSSHHHHTTTTHHHHHHHH
T ss_pred             EEEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCceeeeecCCHHHHHHHH
Confidence            78999999999854                     3445555555444 55689999998764210    0011223332


Q ss_pred             ccCCCCCcEEEEcCCCCChHH--HH-HHHhccccccCcccCCceecCCEEEcCC---------CCeEEEcCcEEEEEecc
Q 007415           59 GRSEIPIPTYFIGDYGVGAAK--VL-LAASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        59 g~~~~p~ptyfv~GNh~~~~~--~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~---------~gv~~~~GlrIa~lgG~  126 (604)
                         .+++. +++.||||....  .+ ..+..        .+-..++.|+.....         .-|++.+|++|+.+|-.
T Consensus        92 ---~lg~D-~~tlGNHEfd~G~~~l~~~~~~--------~~fp~l~aNv~~~~~~~~~~~~~py~i~~~~G~kIgviG~t  159 (579)
T 3ztv_A           92 ---AGNFH-YFTLGNHEFDAGNEGLLKLLEP--------LKIPVLSANVIPDKSSILYNKWKPYDIFTVDGEKIAIIGLD  159 (579)
T ss_dssp             ---HHTCS-EEECCSGGGTTHHHHHHHHHTT--------CCSCEECSSEEECTTSTTTTSCBSEEEEEETTEEEEEEEEE
T ss_pred             ---hcCcC-eeeccccccccCHHHHHHHHHh--------cCCCeeeeeEeccCCcccccccCCeEEEEECCEEEEEEEEE
Confidence               23333 578899985422  22 22321        122457788875321         23456899999999974

>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}

Probab=95.56  E-value=0.049  Score=56.69  Aligned_cols=111  Identities=11%  Similarity=-0.038  Sum_probs=63.3

Q ss_pred             CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhH----------------H
Q 007415            4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL----------------D   51 (604)
Q Consensus         4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~----------------~   51 (604)
                      ++||.++|+||++.                .+-..++.+.+++ +-.++|-+||++....-..                .
T Consensus        12 l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~-~~~llld~GD~~qGs~~~~~~~~~~~~~g~~~g~~~   90 (341)
T 3gve_A           12 LSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQN-PNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTH   90 (341)
T ss_dssp             EEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHC-SSEEEEECSCCSCSSHHHHHHHHHHHHHHHHTSSCC
T ss_pred             EEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcC-CCEEEEecCccCCCcHHHHHhhhccccccccccccc
Confidence            68999999999863                3444555554443 5567888999875432100                0


Q ss_pred             HHHHHhcccCCCCCcEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEE------cCCCCeEEE-----c-
Q 007415           52 EFMNYVEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFW------LKGSGNFTL-----H-  116 (604)
Q Consensus        52 ~~~~~l~g~~~~p~ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~------Lg~~gv~~~-----~-  116 (604)
                      ...+.+   ..+++- +++.||||...  +.+ ..+..        ..-..++.|+..      +....|++.     + 
T Consensus        91 ~~~~~l---n~lg~D-a~tlGNHEfd~G~~~L~~~~~~--------~~fp~l~aNv~~~~g~~~~~py~I~~~~~~~~~G  158 (341)
T 3gve_A           91 PIISVM---NALKYD-AGTLGNHEFNYGLDFLDGTIKG--------ADFPIVNANVKTTSGENRYTPYVINEKTLIDENG  158 (341)
T ss_dssp             HHHHHH---HHTTCC-BEECCGGGGTTCHHHHHHHHHT--------CSSCEECSSEECTTSCBSSCCEEEEEEEEECTTS
T ss_pred             HHHHHH---HhhCCC-eeeccchhhccCHHHHHHHHHh--------cCCCEEEEeeECCCCCCccCCeEEEEEeeeccCC
Confidence            112233   233333 46789999542  223 33321        123468888864      122234454     3 


Q ss_pred             ---CcEEEEEeccc
Q 007415          117 ---GLSVAYLSGRQ  127 (604)
Q Consensus       117 ---GlrIa~lgG~~  127 (604)
                         |+|||.+|-..
T Consensus       159 ~~~gvkIgviG~t~  172 (341)
T 3gve_A          159 NEQKVKVGYIGFVP  172 (341)
T ss_dssp             CEEEEEEEEEEECC
T ss_pred             CcCCeEEEEEEecc
Confidence               69999999764

>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}

Probab=95.18  E-value=0.13  Score=53.57  Aligned_cols=111  Identities=10%  Similarity=-0.068  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhH------------HHHHH
Q 007415            4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFMN   55 (604)
Q Consensus         4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~------------~~~~~   55 (604)
                      ++||.++|+||++.                .+-..++++.+++ +-.++|-.||++....-..            ....+
T Consensus         9 l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~-~n~llld~GD~~qGs~~~~~~~~~~~~~g~~~p~~~   87 (339)
T 3jyf_A            9 LRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEV-KNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYK   87 (339)
T ss_dssp             EEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTC-SCEEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHHH
T ss_pred             EEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhC-CCEEEEECCCCCCCchhHHhhhhcccccccchHHHH
Confidence            68999999999864                3444455544443 5568899999875422100            01122


Q ss_pred             HhcccCCCCCcEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEEc-------CCCCeEEE-----c----
Q 007415           56 YVEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWL-------KGSGNFTL-----H----  116 (604)
Q Consensus        56 ~l~g~~~~p~ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~L-------g~~gv~~~-----~----  116 (604)
                      .+   ..+++. +++.||||-..  +.+ ..+..        .+-..++.|+..-       ....|++.     +    
T Consensus        88 ~m---n~lg~D-~~t~GNHEfd~G~~~l~~~~~~--------a~fp~l~aNv~~~~~g~~~~~py~I~~~~v~~~~G~~~  155 (339)
T 3jyf_A           88 AM---NTLNYA-VGNLGNHEFNYGLDFLHKALAG--------AKFPYVNANIIDAKTGKPMFTPYLIQDTRVVDSDGQIH  155 (339)
T ss_dssp             HH---TTSCCS-EEECCGGGGTTCHHHHHHHHHT--------CSSCEECSSEEETTTSSBSSCCEEEEEEEEECTTSCEE
T ss_pred             HH---HhcCCC-EEecchhhhhccHHHHHHHHHh--------cCCceeeeeeeecCCCCcccCCeEEEEEEeeccCCCcC
Confidence            22   334444 56789999432  223 33321        1234688898762       11234444     4    


Q ss_pred             CcEEEEEeccc
Q 007415          117 GLSVAYLSGRQ  127 (604)
Q Consensus       117 GlrIa~lgG~~  127 (604)
                      |+|||.+|=..
T Consensus       156 gvkIgviG~~~  166 (339)
T 3jyf_A          156 TLRIGYIGFVP  166 (339)
T ss_dssp             EEEEEEEEECC
T ss_pred             CeEEEEEeccc
Confidence            69999999764

>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}

Probab=94.39  E-value=0.18  Score=55.53  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCCCCHH--------------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhc
Q 007415            3 PPRILLCGDVLGRLN--------------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVE   58 (604)
Q Consensus         3 ~~KILv~GDvhG~~~--------------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~   58 (604)
                      ++.||.+.|+||+|.                    .+...++++.+++ |--++|-+||++....-.    -....++++
T Consensus         3 ~LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~-~n~llldaGD~~qGs~~~~~~~g~~~i~~mN   81 (530)
T 4h1s_A            3 ELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAE-PNVLLLDAGDQYQGTIWFTVYKGAEVAHFMN   81 (530)
T ss_dssp             EEEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHC-SSEEEEECSCCSCSSHHHHHHTTHHHHHHHH
T ss_pred             EEEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhC-cCeEEEEeCCcccchHHHHHhCChHHHHHHh
Confidence            367999999998763                    4555555554444 446778899997653210    001223332


Q ss_pred             ccCCCCCcEEEEcCCCCChHH---HHHHHhccccccCcccCCceecCCEEEcC-----------CCCeEEEcCcEEEEEe
Q 007415           59 GRSEIPIPTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK-----------GSGNFTLHGLSVAYLS  124 (604)
Q Consensus        59 g~~~~p~ptyfv~GNh~~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-----------~~gv~~~~GlrIa~lg  124 (604)
                         .+++ -..+.||||-...   +++.+...       ..-.+++.|+..-+           ..-|++.+|+||+.+|
T Consensus        82 ---~lgy-Da~~lGNHEFd~G~~~l~~~~~~~-------a~fp~L~aNv~~~~~~~~~~~~~~~py~I~~~~g~kIgviG  150 (530)
T 4h1s_A           82 ---ALRY-DAMALGNHEFDNGVEGLIEPLLKE-------AKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVG  150 (530)
T ss_dssp             ---HTTC-CEEECCGGGGTTTTHHHHTTTTTT-------CSSCEECTTEEECTTHHHHHTTTSBSEEEEEETTEEEEEEE
T ss_pred             ---ccCC-CEEEEchhhhccCHHHHHHHHHhh-------CCCCEEEEeeeccCCcccccCCcccceEEEEeccEEEeecc
Confidence               2222 2678899985421   22322111       12357899997643           1245678999999999


Q ss_pred             ccc
Q 007415          125 GRQ  127 (604)
Q Consensus       125 G~~  127 (604)
                      -..
T Consensus       151 ltt  153 (530)
T 4h1s_A          151 YTS  153 (530)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            764

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*

Probab=93.38  E-value=0.29  Score=49.63  Aligned_cols=86  Identities=15%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             CcceEEEECCE---EEEEec--C---CCCCCCeEEEEeccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCC---ce-
Q 007415          401 ESHLIVSVGEY---YYCALP--K---GPLVEDHVLVIPVEH-VPNTISTSPECEKELGRFQNSLMMYYKN-QGK---EA-  466 (604)
Q Consensus       401 ~~~lIvs~g~~---~yl~l~--k---gpl~~GH~LIiP~~H-~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~---~~-  466 (604)
                      +...|++.+++   -|+++|  |   .|+..=|+|+||.+| +.|+.+|..+-..=+.+++....+++.. +|.   .+ 
T Consensus       149 E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~r  228 (301)
T 3bl9_A          149 EADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLR  228 (301)
T ss_dssp             SGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred             ccccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeE
Confidence            33446666554   266676  2   389999999999998 9999999887655555555555555443 232   22 


Q ss_pred             EEEeeccCCCCeeEEEEEecC
Q 007415          467 VFFEWLSKRGTHANLQAVPIP  487 (604)
Q Consensus       467 v~~E~~~~~~~H~HihvvPvp  487 (604)
                      ++|-+.. ...|+|+|+|-+-
T Consensus       229 lgfHy~P-S~yHLHlHvis~~  248 (301)
T 3bl9_A          229 VYLHYLP-SYYHLHVHFTALG  248 (301)
T ss_dssp             EEEESSC-SSSSCEEEEEETT
T ss_pred             EEecCCC-CcceEEEEEEecC
Confidence            3333211 2469999999764

>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9

Probab=92.72  E-value=0.19  Score=50.05  Aligned_cols=108  Identities=15%  Similarity=0.040  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCCCH--HHHHHHHHHHHhhcCCCcEEEEecCCCCCC-hhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-
Q 007415            4 PRILLCGDVLGRL--NQLFKRVQSVNKSAGPFDAVLCVGQFFPDS-SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-   79 (604)
Q Consensus         4 ~KILv~GDvhG~~--~~l~~kv~~l~~k~GpfD~vi~~GDff~~~-~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-   79 (604)
                      ||||++||+=|+.  ..+.+.+.++.++.   |++|+-|+-.... .-... ..+.|   ..+++-. .+.|||+-... 
T Consensus         1 m~ilf~GDv~g~~G~~~~~~~l~~lr~~~---d~vi~nge~~~~G~g~~~~-~~~~l---~~~G~Da-~TlGNHefD~~~   72 (255)
T 1t70_A            1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQF---DFVIVNMENSAGGFGMHRD-AARGA---LEAGAGC-LTLGNHAWHHKD   72 (255)
T ss_dssp             CEEEEECCBBHHHHHHHHHHHHHHHGGGC---SEEEEECTBTTTTSSCCHH-HHHHH---HHHTCSE-EECCTTTTSSTT
T ss_pred             CEEEEEeccCChHHHHHHHHHHHHHHhhC---CEEEECCCCccCCcCCCHH-HHHHH---HhCCCCE-EEeccccccCch
Confidence            7999999998864  34444455554433   8888887753211 10011 22222   2233443 45589996533 


Q ss_pred             HHHHHhccccccCcccCCceecCCEE---EcCC-CCeEEEcCcEEEEEecc
Q 007415           80 VLLAASKNSANQGFKMDGFKVTDNLF---WLKG-SGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        80 ~l~~l~~~~~~~~~~~~g~ei~~Nl~---~Lg~-~gv~~~~GlrIa~lgG~  126 (604)
                      ++..+....       .-.-.+.|+.   ..++ ..|++.+|++|+.+|-.
T Consensus        73 l~~~l~~~~-------~~~~~~aN~~~~~~pg~g~~I~~~~G~kIgVigl~  116 (255)
T 1t70_A           73 IYPMLSEDT-------YPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLL  116 (255)
T ss_dssp             HHHHHHTTC-------SCEECCSCCCCTTCSSCSEEEEECSSSEEEEEEEE
T ss_pred             HHHHHhhCC-------CcEEEEeccCCCCCCCCCeEEEEECCEEEEEEEee
Confidence            333333110       0011123332   1132 23557889999998854

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*

Probab=92.49  E-value=0.34  Score=49.88  Aligned_cols=83  Identities=14%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             eEEEECCE---EEEEec--C---CCCCCCeEEEEeccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCC---ce-EEE
Q 007415          404 LIVSVGEY---YYCALP--K---GPLVEDHVLVIPVEH-VPNTISTSPECEKELGRFQNSLMMYYKN-QGK---EA-VFF  469 (604)
Q Consensus       404 lIvs~g~~---~yl~l~--k---gpl~~GH~LIiP~~H-~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~---~~-v~~  469 (604)
                      .|++.++.   -||++|  |   .|+..=|+|+||.+| +.|+.+|..+-..=+.+++....+++.. +|.   .+ ++|
T Consensus       199 ~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgf  278 (350)
T 1vlr_A          199 RIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYL  278 (350)
T ss_dssp             CCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             cEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEe
Confidence            45555544   266676  2   489999999999998 9999999887655555555555555443 232   22 333


Q ss_pred             eeccCCCCeeEEEEEecC
Q 007415          470 EWLSKRGTHANLQAVPIP  487 (604)
Q Consensus       470 E~~~~~~~H~HihvvPvp  487 (604)
                      -+.. ...|+|+|||-+-
T Consensus       279 Hy~P-S~yHLHlHvis~~  295 (350)
T 1vlr_A          279 HYLP-SYYHLHVHFTALG  295 (350)
T ss_dssp             ESSC-SSSSCEEEEEETT
T ss_pred             cCCC-CcceEEEEEEecc
Confidence            3222 2469999999764

>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A

Probab=92.37  E-value=0.32  Score=48.32  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecC-CC-CCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH
Q 007415            4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQ-FF-PDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK   79 (604)
Q Consensus         4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GD-ff-~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~   79 (604)
                      ||||++||+-|+  ...+.+.+.++.++.   |++|+-|. .+ +.... .. ..+.|   .++++.+ ++.|||+-+..
T Consensus         1 m~ilfiGDi~g~~G~~~v~~~l~~lr~~~---d~vi~ngen~~~G~g~~-~~-~~~~l---~~~G~D~-~T~GNHefD~~   71 (252)
T 2z06_A            1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRY---DLVIANGENAARGKGLD-RR-SYRLL---REAGVDL-VSLGNHAWDHK   71 (252)
T ss_dssp             CEEEEECCBCHHHHHHHHHHHHHHHGGGC---SEEEEECTTTTTTSSCC-HH-HHHHH---HHHTCCE-EECCTTTTSCT
T ss_pred             CEEEEEEecCCcccHHHHHHHHHHHHhhC---CEEEEeCCCccCCCCcC-HH-HHHHH---HhCCCCE-EEeccEeeECc
Confidence            799999999886  445556666665544   77777655 43 22111 11 22222   2344555 47799996533


Q ss_pred             -HHHHHhcc--ccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecc
Q 007415           80 -VLLAASKN--SANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGR  126 (604)
Q Consensus        80 -~l~~l~~~--~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~  126 (604)
                       ++..+...  --..+++. +   .+    ..+..|++.+|.+|+.+|-.
T Consensus        72 ~l~~~l~~~~~vrpaN~~~-~---~p----g~~~~i~~~~G~kIgVi~l~  113 (252)
T 2z06_A           72 EVYALLESEPVVRPLNYPP-G---TP----GKGFWRLEVGGESLLFVQVM  113 (252)
T ss_dssp             THHHHHHHSSEECCTTSCS-S---CS----SCSEEEEEETTEEEEEEEEE
T ss_pred             hHHHHhccCCceEeecCCC-C---CC----CCCeEEEEECCEEEEEEEcc
Confidence             33333211  00001110 0   11    11234667899999988744

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=91.77  E-value=0.07  Score=42.83  Aligned_cols=56  Identities=30%  Similarity=0.746  Sum_probs=21.8

Q ss_pred             cceeeeccCCCCCCCcccccCCchhhhh------hccccchhhhhcccCCCCCCccccCCcC
Q 007415          315 MCFKFIYSGSCPRGEKCNFRHDTDAREQ------CLRGVCLDFIIKGKCEKGPECSYKHSLQ  370 (604)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~  370 (604)
                      +|..|...|.|+.|+.|+|.|.......      +-...|..|.+.|.+..|.+|.+.|...
T Consensus        14 ~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           14 LCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             CCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred             hCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            6777777789999999999999743322      2356798899999999999998887654

>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*

Probab=87.86  E-value=3  Score=43.25  Aligned_cols=96  Identities=14%  Similarity=0.058  Sum_probs=56.1

Q ss_pred             CCcccCCCCCCCcceEEEECCE-EEEEecCCCCC-C--------------------CeEEEEec-cccCCCCCCCHHHHH
Q 007415          390 ECWFCLSSPSVESHLIVSVGEY-YYCALPKGPLV-E--------------------DHVLVIPV-EHVPNTISTSPECEK  446 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~-~yl~l~kgpl~-~--------------------GH~LIiP~-~H~~s~~~l~~~~~~  446 (604)
                      .|+||-.+......  ..-+-. ++++-+++|.. +                    .|-+||=- +|..++.+++.+...
T Consensus        51 ~CpfCpg~~~~t~~--~~p~~~~~~v~~N~fpal~~~~~~~~~~~~~l~~~~~~~G~~~VIi~sp~H~~~l~~l~~~~~~  128 (348)
T 1gup_A           51 DCFLCAGNVRVTGD--KNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALT  128 (348)
T ss_dssp             TCTTSTTCBCTTSC--BCCCCSSCEEEECTTCSCCTTCCCCCCCCCSSSCEEECCEEEEEEESCSCTTCCGGGSCHHHHH
T ss_pred             CCCCCCCCcccCCC--CCCCCceEEEecCCCceeccCCCCccccCccceecCccceeEEEEEcCCcccCChhhCCHHHHH
Confidence            69999887543110  011111 55655666533 1                    24555544 999999999988777


Q ss_pred             HHHHH-HHHHHHHHHhcCCceEEEe---eccCC-CCeeEEEEEecCc
Q 007415          447 ELGRF-QNSLMMYYKNQGKEAVFFE---WLSKR-GTHANLQAVPIPT  488 (604)
Q Consensus       447 Ei~~~-~~~L~~~~~~~g~~~v~~E---~~~~~-~~H~HihvvPvp~  488 (604)
                      ++..+ ++.+.++.... .-|.+||   ..++. ..|-|.|++-.|.
T Consensus       129 ~vi~~~~~r~~~l~~~~-~yV~iF~N~G~~~G~Sl~HpH~Qi~a~~~  174 (348)
T 1gup_A          129 EIVKTWQEQTAELGKTY-PWVQVFENKGAAMGCSNPHPGGQIWANSF  174 (348)
T ss_dssp             HHHHHHHHHHHHHHHHC-SEEEEEEEESGGGTCSCCSSEEEEEEESS
T ss_pred             HHHHHHHHHHHHHhhcC-CEEEEecccCCcCCcCCCCCceeEEeccc
Confidence            77654 55555555222 2355666   22233 4799999986543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=81.53  E-value=0.78  Score=36.12  Aligned_cols=53  Identities=36%  Similarity=0.921  Sum_probs=38.9

Q ss_pred             cceeeeccCCCCCCC-cccccCCchh----hhhhccccchhhhhcccCCCCCCccccCCcC
Q 007415          315 MCFKFIYSGSCPRGE-KCNFRHDTDA----REQCLRGVCLDFIIKGKCEKGPECSYKHSLQ  370 (604)
Q Consensus       315 ~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  370 (604)
                      +|..| ..|.|..|+ .|+|.|....    .......+|.+|+. |.+.+| +|.+.|...
T Consensus         8 vC~~f-~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            8 VCREY-QRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             BCHHH-HTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             hCHHH-hcCCCCCCCCCCCCccCcccccccccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            67777 669999999 5999998642    23334557888764 888888 888877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	604
d1guqa2	171	d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly	3e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	5e-05
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	7e-05
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	1e-04
d1z84a2	156	d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly	2e-04
d1xqua_	113	d.13.1.1 (A:) Putative hydrolase {Clostridium ther	0.004

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 372 DDSQRTHRSENASANRSKECWFC--LSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVI 429
           D  Q+ + +E       K       +     +    V   E++   +P         L++
Sbjct: 6   DRLQKEYFAEQ------KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLL 59

Query: 430 PVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEW 471
           P  HV      +     +L      L   Y N  + +  +  
Sbjct: 60  PKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSM 101

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 314 KMCFKFIYSGSCPRGEKCNFRHDTD 338
           ++C  F   G CP G +C+F H+ D
Sbjct: 9   ELCRTFHTIGFCPYGPRCHFIHNAD 33

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 314 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGV 347
           ++C  F  SG+C  GEKC F H        LR +
Sbjct: 7   ELCRPFEESGTCKYGEKCQFAHGFHE----LRSL 36

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 314 KMCFKFIYSGSCPRGEKCNFRHDTD 338
           ++C  +  SG C  G KC F H   
Sbjct: 10  ELCRTYSESGRCRYGAKCQFAHGLG 34

>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 373 DSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE 432
           D  + +  E        +C  C    +   H ++    ++    P        + +IP +
Sbjct: 9   DGTKDYFEET------GKCCLC---EAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKD 59

Query: 433 HVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEW 471
           H  +          +LG     ++     Q  +  +   
Sbjct: 60  HSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYM 98

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELG 449
            C FC          I    E         P    HVL+IP EH+ N    +    + L 
Sbjct: 3   NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILI 62

Query: 450 RFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVP 485
               +     ++ G     +  ++  G  A  Q V 
Sbjct: 63  DIHKAANKVAEDLGIAEKGYRLITNCGVAAG-QTVF 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	604
d1uf3a_	228	Hypothetical protein TT1561 {Thermus thermophilus	99.75
d2yvta1	257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	99.7
d1y23a_	139	Hit {Bacillus subtilis [TaxId: 1423]}	99.69
d1kpfa_	111	Protein kinase C inhibitor-1, PKCI-1 {Human (Homo	99.66
d1xqua_	113	Putative hydrolase {Clostridium thermocellum [TaxI	99.65
d2oika1	139	Histidine triad protein Mfla2506 {Methylobacillus	99.62
d1emsa1	160	NIT-FHIT fusion protein, C-terminal domain {Nemato	99.59
d1fita_	146	FHIT (fragile histidine triad protein) {Human (Hom	99.46
d1s3la_	165	Putative phosphodiesterase MJ0936 {Methanococcus j	99.32
d1z84a2	156	Galactose-1-phosphate uridylyltransferase {Thale c	99.31
d1guqa2	171	Galactose-1-phosphate uridylyltransferase {Escheri	99.28
d3d03a1	271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	99.18
d2hy1a1	256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	99.14
d3ck2a1	173	Uncharacterized protein SP1879 {Streptococcus pneu	99.13
d1z2wa1	182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	98.9
d2a22a1	193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	98.83
d1nnwa_	251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	98.8
d1su1a_	184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	98.78
d2nxfa1	320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	98.25
d2qfra2	312	Plant purple acid phosphatase, catalytic domain {K	98.08
d1utea_	302	Mammalian purple acid phosphatase {Pig (Sus scrofa	98.0
d1ii7a_	333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.0
d1xm7a_	188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	97.85
d1g5ba_	219	lambda ser/thr protein phosphatase {Bacteriophage	97.83
d1vlra1	192	mRNA decapping enzyme DcpS C-terminal domain {Mous	97.31
d1usha2	337	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	96.99
d3c9fa2	322	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	96.87
d2z1aa2	302	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	96.51
d1z84a1	173	Galactose-1-phosphate uridylyltransferase {Thale c	96.36
d1s95a_	324	Serine/threonine protein phosphatase 5, PP5 {Human	95.87
d1jk7a_	294	Protein phosphatase-1 (PP-1) {Human (Homo sapiens)	95.57
d3c5wc1	288	Protein phosphatase 2A catalytic subunit alpha iso	95.52
d1auia_	473	Protein phosphatase-2B (PP-2B, calcineurin A subun	94.97
d1guqa1	176	Galactose-1-phosphate uridylyltransferase {Escheri	93.42
d1t71a_	281	Hypothetical protein MPN349 {Mycoplasma pneumoniae	89.9
d1t70a_	255	Putative phosphatase DR1281 {Deinococcus radiodura	84.97
d2z06a1	252	Hypothetical protein TTHA0625 {Thermus thermophilu	84.33

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Hypothetical protein TT1561
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1.2e-17  Score=160.45  Aligned_cols=198  Identities=18%  Similarity=0.164  Sum_probs=132.1

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH-
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL-   81 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l-   81 (604)
                      +.+||++||+||+++.+-+.++.++.+ + .|+||++||++..... ..++..++....+..+|+|+|+||||.+.... 
T Consensus         5 ~~~i~~~sd~hg~~eale~~~~~~~~~-~-~D~vv~~GDl~~~~~~-~~~~~~~~~~L~~~~~pv~~i~GNHD~~~~~~~   81 (228)
T d1uf3a_           5 VRYILATSNPMGDLEALEKFVKLAPDT-G-ADAIALIGNLMPKAAK-SRDYAAFFRILSEAHLPTAYVPGPQDAPIWEYL   81 (228)
T ss_dssp             CCEEEEEECCTTCHHHHHHHHTHHHHH-T-CSEEEEESCSSCTTCC-HHHHHHHHHHHGGGCSCEEEECCTTSCSHHHHH
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHhhc-C-CCEEEECCCCCCCCcc-chHHHHhhhhhccccceEEEEecCCCchhhhhh
Confidence            469999999999998666556555544 3 7999999999764322 22344454444667899999999999753211 


Q ss_pred             -HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCC----CCCCCHHHHHHHHHhh-cCCCCc
Q 007415           82 -LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQ----FGTYSQDDVDALRALA-EEPGIV  155 (604)
Q Consensus        82 -~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~----~~~~te~d~~~L~~l~-~~~~~v  155 (604)
                       ..+..           ......+..+.........+..++++++........    .........+.+.... ......
T Consensus        82 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  150 (228)
T d1uf3a_          82 REAANV-----------ELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYP  150 (228)
T ss_dssp             HHHHHH-----------HHHCTTEEECBTSEEEETTTEEEEEECSEEESSSCCBSSSSCEEEHHHHHHHHGGGGGSCSCC
T ss_pred             hhhccc-----------ccccccccccceeeeeccCCEEEEecCCccccCcCcchhhhhhhhHHHHHHHHHHHhhccCCc
Confidence             11110           112344445554333445688899998886654332    1233455555555433 334567


Q ss_pred             cEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       156 DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      +||++|.+|.+...             ...|+..+.++++..+|+|++|||.|..++        ....|.+++.|.++.
T Consensus       151 ~il~~H~p~~~~~~-------------~~~~~~~~~~~~~~~~~~lvl~GH~H~~~~--------~~g~~~~v~pG~~~~  209 (228)
T d1uf3a_         151 KIFLFHTMPYHKGL-------------NEQGSHEVAHLIKTHNPLLVLVAGKGQKHE--------MLGASWVVVPGDLSE  209 (228)
T ss_dssp             EEEEESSCBCBTTT-------------BTTSBHHHHHHHHHHCCSEEEECCSSCEEE--------EETTEEEEECCBGGG
T ss_pred             eEEEEeeeccCccc-------------cccccHHHHHHHHhcCCcEEEEcccccchh--------ccCCEEEEECCcccc
Confidence            99999999986421             257999999999999999999999886432        133588999998864

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Uncharacterized protein Aq 1956
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.70  E-value=2.1e-16  Score=154.09  Aligned_cols=204  Identities=13%  Similarity=0.093  Sum_probs=129.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh-------------------------hHHHHHHHhc
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-------------------------LLDEFMNYVE   58 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~-------------------------~~~~~~~~l~   58 (604)
                      .|||+++|+|++++.+-+.++.++++  .+|+|||+||++.....                         ....+..++.
T Consensus         3 ~ri~~isD~h~~~~~l~~l~~~~~~~--~~D~vli~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~   80 (257)
T d2yvta1           3 RKVLAIKNFKERFDLLPKLKGVIAEK--QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFR   80 (257)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHHHHHH--CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHhhc--CCCEEEEecccCCCCCCCHHHHHHHHhhhhhceeeeccccccchhhHHHHHH
Confidence            59999999999997665555555544  37999999999875211                         1122333444


Q ss_pred             ccCCCCCcEEEEcCCCCChHHHH--HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCC-CC
Q 007415           59 GRSEIPIPTYFIGDYGVGAAKVL--LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQ-FG  135 (604)
Q Consensus        59 g~~~~p~ptyfv~GNh~~~~~~l--~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~-~~  135 (604)
                      .....++|+|+|+||||......  ..+.           .....+++..+....+...+++.|++++++....... ..
T Consensus        81 ~L~~~~~pv~~i~GNHD~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
T d2yvta1          81 EIGELGVKTFVVPGKNDAPLKIFLRAAYE-----------AETAYPNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDF  149 (257)
T ss_dssp             HHHTTCSEEEEECCTTSCCHHHHHHHHHH-----------TTTTCTTEEECSSEEEEETTTEEEEEECSEEESSCCBSSS
T ss_pred             HHHhcCCcEEEEeCCCcchhhHHHHHhcc-----------ccccccccccccceeEEecCCeEEEEeccccCCccccchh
Confidence            44567899999999999653322  2121           1112345666664333345789999999876532211 11


Q ss_pred             C--CCHHHHHHHHHh-hcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 007415          136 T--YSQDDVDALRAL-AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA  212 (604)
Q Consensus       136 ~--~te~d~~~L~~l-~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyE  212 (604)
                      .  +.+.....+... .......+||+||.+|.+.... .   .+..  ....|+..+.++++..+|.|+++||.|..++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~pp~~~~~~-~---~~~~--~~~~g~~~l~~~l~~~~~~~~~~GHiH~~~~  223 (257)
T d2yvta1         150 VLKYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVD-R---TPED--PKHHGSAVVNTIIKSLNPEVAIVGHVGKGHE  223 (257)
T ss_dssp             SCEEEHHHHHHHGGGGGGSCCCEEEEEESSCCSCSSTT-C---BTTB--SCCCSCHHHHHHHHHHCCSEEEECSSCCEEE
T ss_pred             hhhhhhhHHHHHHHHhhhcccccEEEEEcccccccccc-c---cccc--hhhhhhHHHHHhhhhcCCcEEEEEeecCCeE
Confidence            1  122222223222 2334567899999999875321 1   1111  2468999999999999999999999886533


Q ss_pred             ccccccCCCcceeEEEEcCCCC
Q 007415          213 REPYSNVDAVHVTRFLGLAPVG  234 (604)
Q Consensus       213 r~Py~~~~~~~~TRFI~L~~~g  234 (604)
                              ....|.+++.|.+.
T Consensus       224 --------~~g~~~~~~pGs~~  237 (257)
T d2yvta1         224 --------LVGNTIVVNPGEFE  237 (257)
T ss_dssp             --------EETTEEEEECCBGG
T ss_pred             --------ecCCeEEEECCccc
Confidence                    23468999999764

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=4.5e-18  Score=154.15  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=80.2

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHH----HHHHHHHhcCC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQN----SLMMYYKNQGK  464 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~----~L~~~~~~~g~  464 (604)
                      ++|.||.+..+.....+|++++++++++++.|.++||+||||++|++++.+++++++.++....+    +|.+.+...|+
T Consensus         1 e~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~   80 (139)
T d1y23a_           1 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL   80 (139)
T ss_dssp             CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEE
T ss_pred             CcCccCccccCCCCccEEEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence            58999987644333457899999999999999999999999999999999999999988886554    44445556777


Q ss_pred             ceEEEe--eccCCCCeeEEEEEecC
Q 007415          465 EAVFFE--WLSKRGTHANLQAVPIP  487 (604)
Q Consensus       465 ~~v~~E--~~~~~~~H~HihvvPvp  487 (604)
                      +++++.  .+++.++|+|+|+||+.
T Consensus        81 ~i~~n~g~~agq~v~H~H~HviPR~  105 (139)
T d1y23a_          81 NTLNNNGEKAGQSVFHYHMHIIPRY  105 (139)
T ss_dssp             EEEEEESGGGTCCSSSCCEEEEEEC
T ss_pred             EEEeCCCccccEecCEEEEEEEccc
Confidence            887775  33445789999999974

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-17  Score=143.99  Aligned_cols=97  Identities=18%  Similarity=0.110  Sum_probs=79.4

Q ss_pred             CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCc
Q 007415          390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE  465 (604)
Q Consensus       390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~~  465 (604)
                      +|.||.+..+.....||++++++++++++.|+++||+||||++|+.++.+++++.+.++..+.+.+.++.++    .|++
T Consensus         1 dCiFc~I~~~e~p~~ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (111)
T d1kpfa_           1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYR   80 (111)
T ss_dssp             CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             CCcccccccCCCCccEEEeCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence            699999765433455889999999999999999999999999999999999999888888887777776654    4566


Q ss_pred             eEEEe--eccCCCCeeEEEEEec
Q 007415          466 AVFFE--WLSKRGTHANLQAVPI  486 (604)
Q Consensus       466 ~v~~E--~~~~~~~H~HihvvPv  486 (604)
                      ++.+.  .+++.+.|+|+|+||.
T Consensus        81 i~~n~g~~agq~V~HlH~Hiip~  103 (111)
T d1kpfa_          81 MVVNEGSDGGQSVYHVHLHVLGG  103 (111)
T ss_dssp             EECCCHHHHTCCSSSCCEEEEES
T ss_pred             EEEeCCccCCcccceeEEEEeCC
Confidence            66554  3345578999999995

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.65  E-value=2.5e-17  Score=143.98  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----c
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----Q  462 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-----~  462 (604)
                      +++|.||.+..+.....+|+++++++++++..|.++||+||||++|++++.++++++.+++....+.+.++++.     .
T Consensus         1 m~~CiFC~I~~~e~p~~ivyede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T d1xqua_           1 LENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEK   80 (113)
T ss_dssp             CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCCcCCcccCCCCcccEEEeCCCEEEEECCCCCCCceEEEeecccccchhhccchhHHHHHHHHHHHHHHHHhhccCCC
Confidence            46899999875544566899999999999999999999999999999999999998888888888877777764     3


Q ss_pred             CCceEEEe-ec-cCCCCeeEEEEEec
Q 007415          463 GKEAVFFE-WL-SKRGTHANLQAVPI  486 (604)
Q Consensus       463 g~~~v~~E-~~-~~~~~H~HihvvPv  486 (604)
                      |++++++. .. .+...|+|+|+||.
T Consensus        81 g~~~~~~~g~~agq~v~HlH~Hvip~  106 (113)
T d1xqua_          81 GYRLITNCGVAAGQTVFHLHYHLLGG  106 (113)
T ss_dssp             CEEEECCCSTTTTCCSCSCCEEEEES
T ss_pred             ceEEEEeCccccccccCeeEEEEeCc
Confidence            45555554 23 33468999999995

>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]

Probab=99.62  E-value=7.6e-16  Score=139.38  Aligned_cols=96  Identities=14%  Similarity=0.110  Sum_probs=81.3

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceE
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAV  467 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~v  467 (604)
                      .+|.||.+.+    ..||++++.+++.+++.|.++||+||||++|+.++.+|+++++.++....+.+.+.+++ .+...+
T Consensus         4 ~~C~fC~~~~----~~ii~e~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~~~   79 (139)
T d2oika1           4 KNCELCTTAG----GEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKI   79 (139)
T ss_dssp             TTCHHHHSCC----SEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             CcCccccCcC----CeEEEECCCEEEEEcCCCCCCcEEEEecccccchhhhccHHHHHHHHHHHHHHhHHHHhhcchhhh
Confidence            4799998654    45899999999999999999999999999999999999999999999988888877664 455555


Q ss_pred             EEeeccCCCCeeEEEEEecCc
Q 007415          468 FFEWLSKRGTHANLQAVPIPT  488 (604)
Q Consensus       468 ~~E~~~~~~~H~HihvvPvp~  488 (604)
                      .+...++.++|+|+||||+..
T Consensus        80 n~~~~g~~v~HlH~HviPR~~  100 (139)
T d2oika1          80 NLASLGNMTPHVHWHVIPRFK  100 (139)
T ss_dssp             EEEECCSSSCSCEEEEEEECT
T ss_pred             HHHHhcCCCCeEEEEEecccC
Confidence            555455668999999999754

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=9.4e-16  Score=141.94  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=78.6

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QG  463 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g  463 (604)
                      .+.|.||.-  .++...||+.+++++++++..|+++||+||||++|++++.+|+++++.++....+.+.+++..    .|
T Consensus        16 ~~~~~~~~~--eiP~~~ii~ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g   93 (160)
T d1emsa1          16 TGGLKFARF--NIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTS   93 (160)
T ss_dssp             SSCCEETTE--ECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             cCCceEcCC--cCCcceEEEeCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccce
Confidence            334555542  356666999999999999999999999999999999999999999999999888777766553    35


Q ss_pred             CceEEEe--eccCCCCeeEEEEEecCcc
Q 007415          464 KEAVFFE--WLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       464 ~~~v~~E--~~~~~~~H~HihvvPvp~~  489 (604)
                      ++++++.  .+++.++|+|+||||+...
T Consensus        94 ~ni~~n~G~~aGq~V~HlHiHIIPR~~~  121 (160)
T d1emsa1          94 TTICVQDGKDAGQTVPHVHIHILPRRAG  121 (160)
T ss_dssp             EEEECCCSGGGTCCSSSCCEEEEEECSS
T ss_pred             EEEecccCCCCCeEEeEEEEEEECCcCC
Confidence            5555544  2344578999999997643

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.2e-14  Score=128.82  Aligned_cols=87  Identities=15%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe--eccCC
Q 007415          402 SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKR  475 (604)
Q Consensus       402 ~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~~~v~~E--~~~~~  475 (604)
                      ...||+.++.+++++++.|+++||+||||++|++++.+|+++++.+|.+..+.+.+++.+    .|++++++.  .+++.
T Consensus        11 p~~ii~e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~   90 (146)
T d1fita_          11 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQT   90 (146)
T ss_dssp             GGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCC
T ss_pred             cceEEEECCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEEEccccccCCC
Confidence            456899999999999999999999999999999999999999999999888777766554    455555544  23444


Q ss_pred             CCeeEEEEEecCc
Q 007415          476 GTHANLQAVPIPT  488 (604)
Q Consensus       476 ~~H~HihvvPvp~  488 (604)
                      +.|+|+||||+-.
T Consensus        91 v~HlH~HiiPR~~  103 (146)
T d1fita_          91 VKHVHVHVLPRKA  103 (146)
T ss_dssp             SSSCCEEEEEECT
T ss_pred             CCEEEEEEecCcC
Confidence            6899999999754

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=1.3e-11  Score=113.95  Aligned_cols=150  Identities=11%  Similarity=0.020  Sum_probs=96.7

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH-H
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL-L   82 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l-~   82 (604)
                      |||++++|+||++..+-+.++.+.+ . .+|.|||+||+.+..     .+..+    .....|++++.|||+.....+ .
T Consensus         1 MkI~iiSDiHgn~~al~~vl~~~~~-~-~~D~ii~~GD~~~~~-----~~~~l----~~~~~~~~~v~GN~D~~~~~~~~   69 (165)
T d1s3la_           1 MKIGIMSDTHDHLPNIRKAIEIFND-E-NVETVIHCGDFVSLF-----VIKEF----ENLNANIIATYGNNDGERCKLKE   69 (165)
T ss_dssp             CEEEEECCCTTCHHHHHHHHHHHHH-S-CCSEEEECSCCCSTH-----HHHHG----GGCSSEEEEECCTTCCCHHHHHH
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHh-c-CCCEEEECCCccCHH-----HHHHH----hhcCccEEEEcccccccchhhhH
Confidence            8999999999999877766665544 3 479999999998652     12222    345578999999998643222 1


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE  162 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~  162 (604)
                      .+..              ......+.....+++                                     .+..|+++|.
T Consensus        70 ~~~~--------------~~~~~~~~~~~~~~~-------------------------------------~~~~i~l~Hg   98 (165)
T d1s3la_          70 WLKD--------------INEENIIDDFISVEI-------------------------------------DDLKFFITHG   98 (165)
T ss_dssp             HHHH--------------HCTTCEEESEEEEEE-------------------------------------TTEEEEEEES
T ss_pred             hhhh--------------hcccccCChhhceEE-------------------------------------CCcEEEEEEC
Confidence            1110              000001111111222                                     2357889998


Q ss_pred             CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeE
Q 007415          163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFI  242 (604)
Q Consensus       163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~  242 (604)
                      +|..+                      +++++...++.+.|+||.|..+.+       ....|.|||+|.+|.+.+.+--
T Consensus        99 ~~~~~----------------------~~~~~~~~~~d~v~~GHtH~~~~~-------~~~~~~~iNPGSvg~p~~~~~s  149 (165)
T d1s3la_          99 HHQSV----------------------LEMAIKSGLYDVVIYGHTHERVFE-------EVDDVLVINPGECCGYLTGIPT  149 (165)
T ss_dssp             CCHHH----------------------HHHHHHHSCCSEEEEECSSCCEEE-------EETTEEEEECCCSSCTTTSCCE
T ss_pred             CcccH----------------------HHHHhhcCCCCEEEECCcCcceEE-------EECCEEEEECCCCCCCCCCCCE
Confidence            77643                      346677889999999999864332       2346999999999875443334


Q ss_pred             EE
Q 007415          243 HA  244 (604)
Q Consensus       243 yA  244 (604)
                      ||
T Consensus       150 ~~  151 (165)
T d1s3la_         150 IG  151 (165)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=2.4e-12  Score=118.23  Aligned_cols=99  Identities=16%  Similarity=0.230  Sum_probs=77.7

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCC
Q 007415          389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGK  464 (604)
Q Consensus       389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~  464 (604)
                      ..|.||.+..   +.+||+.++++++++|..|..|||+||||++|++++.+++++++.+|..+.+.+.+++.+    .++
T Consensus        19 ~~Cifc~i~~---~~riV~e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~   95 (156)
T d1z84a2          19 GKCCLCEAKS---KHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPY   95 (156)
T ss_dssp             SSCTTTTHHH---HSEEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred             CCCceEEecC---CCEEEEECCCEEEEEccCCCcCcEEEEEecchhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3799997642   347999999999999999999999999999999999999999999999988877777764    334


Q ss_pred             ceEEEee-ccCC-----CCeeEEEEEecCcch
Q 007415          465 EAVFFEW-LSKR-----GTHANLQAVPIPTSK  490 (604)
Q Consensus       465 ~~v~~E~-~~~~-----~~H~HihvvPvp~~~  490 (604)
                      ++.++.. .+..     ..|+|+|++|+=+.+
T Consensus        96 n~~~~~~p~~~~~~~~~~~H~hi~~~Pr~~~~  127 (156)
T d1z84a2          96 NYMIHTSPLKVTESQLPYTHWFLQIVPQLSGV  127 (156)
T ss_dssp             EEEEECCCTTCCGGGGGGCCCEEEEEECCCCC
T ss_pred             cHhhhcCCCCCcccCceeEEEEEEecCCCCcc
Confidence            4443331 1111     259999999975443

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.4e-12  Score=121.46  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=76.2

Q ss_pred             CCCcccCCCC-C-CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----c
Q 007415          389 KECWFCLSSP-S-VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----Q  462 (604)
Q Consensus       389 ~~C~FC~~~~-~-~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~  462 (604)
                      ..|.||.+-. . ..+..||+.++++.+++|..|..|||+||||++|+.++.+++++++.+|....+.+.+++.+    .
T Consensus        17 ~~clfcdii~~E~~~~~RiV~e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~~~~~   96 (171)
T d1guqa2          17 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCS   96 (171)
T ss_dssp             SSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCCcHHHHHHhhccCCCeEEEECCeEEEEEcCCCCCcceEEEecchhcCChhhCCHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4799998642 1 12456999999999999999999999999999999999999999999999888777766653    2


Q ss_pred             -CCceEEEee-ccCC---CCeeEEEEEec
Q 007415          463 -GKEAVFFEW-LSKR---GTHANLQAVPI  486 (604)
Q Consensus       463 -g~~~v~~E~-~~~~---~~H~HihvvPv  486 (604)
                       ++++.+... .+..   ..|+|+|++|+
T Consensus        97 ~~y~~~~~~~p~~~~~~~~~H~Hihi~Pr  125 (171)
T d1guqa2          97 FPYSMGWHGAPFNGEENQHWQLHAHFYPP  125 (171)
T ss_dssp             CCEEEEEECCCSSSSCCTTCCCEEEEECC
T ss_pred             cchhhhhhcCccccCCCceeEEEEEEccC
Confidence             344444441 1111   35999999994

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Glycerophosphodiesterase GpdQ
species: Enterobacter aerogenes [TaxId: 548]

Probab=99.18  E-value=2.7e-10  Score=112.99  Aligned_cols=186  Identities=15%  Similarity=0.116  Sum_probs=108.3

Q ss_pred             CEEEEEcCCC---------CC--HHH-HHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEE
Q 007415            4 PRILLCGDVL---------GR--LNQ-LFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFI   70 (604)
Q Consensus         4 ~KILv~GDvh---------G~--~~~-l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv   70 (604)
                      |||+.++|+|         |.  ... +-+.++.+++....+|+||++||+..... .+-..+.++|   .++++|+|++
T Consensus         1 M~i~hiSD~Hl~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~D~vv~~GDl~~~~~~~~y~~~~~~l---~~l~~p~~~i   77 (271)
T d3d03a1           1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQIL---GSLNYPLYLI   77 (271)
T ss_dssp             CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHH---TTCSSCEEEE
T ss_pred             CEEEEEecCcCCCCccccccCcCHHHHHHHHHHHHHhcCCCCCEEEECcccCcCCcchhHHHHHHHH---hccCCCEEEE
Confidence            8999999999         21  122 33334445444336899999999976432 2223355565   5678999999


Q ss_pred             cCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hh
Q 007415           71 GDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LA  149 (604)
Q Consensus        71 ~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~  149 (604)
                      +||||....+.+.+.......     .. ...+.     ...+...+.+|.+|......  .....+.++.++-|.+ +.
T Consensus        78 ~GNHD~~~~~~~~~~~~~~~~-----~~-~~~~~-----~~~~~~~~~~~i~ldt~~~~--~~~~~l~~~ql~wL~~~L~  144 (271)
T d3d03a1          78 PGNHDDKALFLEYLQPLCPQL-----GS-DANNM-----RCAVDDFATRLLFIDSSRAG--TSKGWLTDETISWLEAQLF  144 (271)
T ss_dssp             CCTTSCHHHHHHHHGGGSGGG-----CS-CGGGC-----CEEECSSSSEEEECCCCCTT--CSSBCCCHHHHHHHHHHHH
T ss_pred             ecCccchHHHHHHhhhhhhcc-----cc-ccCcc-----eEEEecCCeEEEecccccCC--CCcceecHHHHHHHHHHHh
Confidence            999998665555553211100     00 00000     11112347788777654321  1124567777766654 32


Q ss_pred             cCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccc
Q 007415          150 EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYA  212 (604)
Q Consensus       150 ~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyE  212 (604)
                      +....--|+++|-+|..+......   +.    .......+.+++++. ..++.||||.|..+.
T Consensus       145 ~~~~~~~iv~~Hh~p~~~~~~~~d---~~----~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~~  201 (271)
T d3d03a1         145 EGGDKPATIFMHHPPLPLGNAQMD---PI----ACENGHRLLALVERFPSLTRIFCGHNHSLTM  201 (271)
T ss_dssp             HHTTSCEEEEESSCSSCCSCTTTG---GG----SBTTTHHHHHHHHHCTTEEEEEECSSSSCEE
T ss_pred             hhccceeEEEeccCccccCccccc---cc----cccchHHHHHHHHhcCCeEEEEeCCcchhhc
Confidence            223345678899999766432110   00    124566788888886 588999999886533

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Rv0805 cyclic nucleotide phosphodiesterase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=2.1e-10  Score=112.43  Aligned_cols=184  Identities=14%  Similarity=0.085  Sum_probs=110.7

Q ss_pred             CCEEEEEcCCCC----C--------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh-hHHHHHHHhccc-CCCCCcEE
Q 007415            3 PPRILLCGDVLG----R--------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNYVEGR-SEIPIPTY   68 (604)
Q Consensus         3 ~~KILv~GDvhG----~--------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~-~~~~~~~~l~g~-~~~p~pty   68 (604)
                      .|||+.++|+|=    .        .+.+.+.++.+++...+.|+||++||++..... .-+.+.+++... ..+++|+|
T Consensus         4 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~pD~vl~~GDl~~~g~~~~~~~~~~~l~~~~~~~~~p~~   83 (256)
T d2hy1a1           4 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV   83 (256)
T ss_dssp             SEEEEEECCCCBC----------CHHHHHHHHHHHHHHHTCCCSEEEECSCCBSSCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             CEEEEEEeeCccCCCCcccccCcCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCChhHHHHHHHHhhhhhhhcCCCEE
Confidence            489999999992    1        222333345554444468999999999765332 112344444321 24578999


Q ss_pred             EEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHh
Q 007415           69 FIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL  148 (604)
Q Consensus        69 fv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l  148 (604)
                      +|.||||....+...+...         .    .+.  ......+.+.|.+|.++.-...  ......++++.++.|.+.
T Consensus        84 ~v~GNHD~~~~~~~~~~~~---------~----~~~--~~~~~~~~~~~~~~~~ldt~~~--~~~~g~~~~~~~~wl~~~  146 (256)
T d2hy1a1          84 WVMGNHDDRAELRKFLLDE---------A----PSM--APLDRVCMIDGLRIIVLDTSVP--GHHHGEIRASQLGWLAEE  146 (256)
T ss_dssp             ECCCTTSCHHHHHHHTTCC---------C----CCC--SCCCEEEEETTEEEEECCCBCT--TCSSBCCCHHHHHHHHHH
T ss_pred             EEcccccchhhhhhhhccc---------c----ccc--cccceEEEecccceeeeeeeec--CCcCCcccHHHHHHHHHH
Confidence            9999999755444443211         0    010  0112344678888887743321  111235677777766653


Q ss_pred             -hcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415          149 -AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF  210 (604)
Q Consensus       149 -~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f  210 (604)
                       .......-|+++|.+|........     ..  .....+..+.++++..+..+.||||.|..
T Consensus       147 L~~~~~~~~iv~~Hhpp~~~~~~~~-----~~--~~~~~~~~~~~i~~~~~v~~~~~GH~H~~  202 (256)
T d2hy1a1         147 LATPAPDGTILALHHPPIPSVLDMA-----VT--VELRDQAALGRVLRGTDVRAILAGHLHYS  202 (256)
T ss_dssp             HTSCCTTCEEEECSSCSSCCSSHHH-----HT--TSBCCHHHHHHHHTTSSEEEEEECSSSSC
T ss_pred             HHhhhccCceeeeecCCcccccccc-----cc--cccccHHHHHHHHhccCceEEEccccchh
Confidence             323334458999999987632111     01  12346778999999999999999998854

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Uncharacterized protein SP1879
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.13  E-value=1.6e-10  Score=107.47  Aligned_cols=133  Identities=14%  Similarity=0.009  Sum_probs=90.0

Q ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH
Q 007415            1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV   80 (604)
Q Consensus         1 m~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~   80 (604)
                      |+++||+|++|+||++..+-+.++.+   .+.+|+||++||+......             ....++++|.|||+...  
T Consensus         1 m~~~kI~viSD~Hgn~~al~~vl~~~---~~~~D~iih~GD~~~~~~~-------------~~~~~~~~V~GN~D~~~--   62 (173)
T d3ck2a1           1 MAKQTIIVMSDSHGDSLIVEEVRDRY---VGKVDAVFHNGDSELRPDS-------------PLWEGIRVVKGNMDFYA--   62 (173)
T ss_dssp             CCCEEEEEECCCTTCHHHHHHHHHHH---TTTSSEEEECSCCCSCTTC-------------GGGTTEEECCCTTCCST--
T ss_pred             CCCCEEEEEeccCCCHHHHHHHHHHh---hcCCCEEEECCcccCcccc-------------hhhcCCeEEecCccccc--
Confidence            99999999999999998665555433   2248999999998655221             12247899999997420  


Q ss_pred             HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 007415           81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT  160 (604)
Q Consensus        81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLT  160 (604)
                                      .         +....+++++|++|                                     +++
T Consensus        63 ----------------~---------~~~~~~~~~~~~~~-------------------------------------~~~   80 (173)
T d3ck2a1          63 ----------------G---------YPERLVTELGSTKI-------------------------------------IQT   80 (173)
T ss_dssp             ----------------T---------CCSEEEEEETTEEE-------------------------------------EEE
T ss_pred             ----------------c---------cceEEEEEECCEEE-------------------------------------EEE
Confidence                            0         00112345555554                                     455


Q ss_pred             CCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415          161 NEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK  236 (604)
Q Consensus       161 h~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~  236 (604)
                      |-.|.++                ..+...+.+++....+.+.++||.|..+-+       ....+.+||+|++|.+
T Consensus        81 Hg~~~~~----------------~~~~~~l~~~~~~~~~dvvi~GHTH~p~~~-------~~~~~~~iNPGSvg~p  133 (173)
T d3ck2a1          81 HGHLFDI----------------NFNFQKLDYWAQEEEAAICLYGHLHVPSAW-------LEGKILFLNPGSISQP  133 (173)
T ss_dssp             CSGGGTT----------------TTCSHHHHHHHHHTTCSEEECCSSCCEEEE-------EETTEEEEEECCSSSC
T ss_pred             eCcCCCC----------------CCCHHHHHHHHHhcCCCEEEeCCcCcceEE-------EECCEEEEECCCCCCC
Confidence            5544432                134456788888899999999999875332       2346999999999864

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.3e-09  Score=102.11  Aligned_cols=136  Identities=13%  Similarity=0.101  Sum_probs=86.6

Q ss_pred             CEEEEEcCCCCCHHH--HHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH
Q 007415            4 PRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL   81 (604)
Q Consensus         4 ~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l   81 (604)
                      |||||++|+||+...  +-+++.++-+ .+++|.|||+||+.+.  +    ..++|   .++..++++|.||||...   
T Consensus         1 MkI~viSD~H~~~~~~~l~~~~~~~~~-~~~~D~Ii~~GDi~~~--e----~l~~l---~~~~~~v~~V~GN~D~~~---   67 (182)
T d1z2wa1           1 MLVLVLGDLHIPHRCNSLPAKFKKLLV-PGKIQHILCTGNLCTK--E----SYDYL---KTLAGDVHIVRGDFDENL---   67 (182)
T ss_dssp             CEEEEECCCCBTTTCSSCCHHHHTTCC-TTSCSEEEECSCCBSH--H----HHHHH---HHHCSEEEECCCTTCCCT---
T ss_pred             CEEEEEeecCCCCcchhhHHHHHHHhc-ccCCCEEEEccCccch--h----hHHHH---HhhCCceEEEeCCcCccc---
Confidence            899999999986542  2233433322 3469999999999752  2    33444   234457899999998420   


Q ss_pred             HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 007415           82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN  161 (604)
Q Consensus        82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh  161 (604)
                                     .         +....+++++|.+                                     |++||
T Consensus        68 ---------------~---------~p~~~~~~~~g~~-------------------------------------i~~~H   86 (182)
T d1z2wa1          68 ---------------N---------YPEQKVVTVGQFK-------------------------------------IGLIH   86 (182)
T ss_dssp             ---------------T---------SCSEEEEEETTEE-------------------------------------EEEEC
T ss_pred             ---------------c---------cceEEEEEEcCcE-------------------------------------EEEEe
Confidence                           0         0011233444444                                     45666


Q ss_pred             CCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415          162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK  236 (604)
Q Consensus       162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~  236 (604)
                      ..+...                ......+.++++..++.+.|+||.|..+-     .  ....+.|||+|+++-+
T Consensus        87 g~~~~~----------------~~~~~~l~~~~~~~~~divi~GHTH~p~~-----~--~~~~~~~iNPGSv~~p  138 (182)
T d1z2wa1          87 GHQVIP----------------WGDMASLALLQRQFDVDILISGHTHKFEA-----F--EHENKFYINPGSATGA  138 (182)
T ss_dssp             SCCCCB----------------TTCHHHHHHHHHHHSSSEEECCSSCCCEE-----E--EETTEEEEECCCTTCC
T ss_pred             CCCCCC----------------CCCHHHHHHHHhccCCCEEEECCcCcceE-----E--EECCEEEEeCCCCCCC
Confidence            543321                12445778888999999999999986432     1  2346999999999753

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Cryptosporidium parvum [TaxId: 5807]

Probab=98.83  E-value=6.4e-09  Score=98.11  Aligned_cols=144  Identities=12%  Similarity=0.092  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCCHHH--HHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415            5 RILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL   82 (604)
Q Consensus         5 KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~   82 (604)
                      -|||+||+||+...  +.+++.++.+ .+++|.|||+||+.+.  .    ..++|.   ++..++++|.||||...    
T Consensus         5 lIlviSD~H~~~~~~~l~~~~~~~~~-~~~vD~ii~~GDi~~~--~----~l~~l~---~l~~~v~~V~GN~D~~~----   70 (193)
T d2a22a1           5 LVLLIGDLKIPYGAKELPSNFRELLA-TDKINYVLCTGNVCSQ--E----YVEMLK---NITKNVYIVSGDLDSAI----   70 (193)
T ss_dssp             EEEEECCCCTTTTCSSCCGGGHHHHH-CTTCCEEEECSCCCCH--H----HHHHHH---HHCSCEEECCCTTCCSC----
T ss_pred             EEEEEeCCCCCcccchhhHHHHHHhc-cCCCCEEEECCCCCCH--H----HHHHHH---hhCCCEEEEcCCCCcch----
Confidence            49999999985332  2223333322 3479999999999753  2    233442   23346899999998520    


Q ss_pred             HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415           83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE  162 (604)
Q Consensus        83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~  162 (604)
                        .            .........|....+++++|++|                                     +++|.
T Consensus        71 --~------------~~~~~~~~~lp~~~~~~~~~~~i-------------------------------------~l~H~   99 (193)
T d2a22a1          71 --F------------NPDPESNGVFPEYVVVQIGEFKI-------------------------------------GLMHG   99 (193)
T ss_dssp             --C------------BCCGGGTBCCCSEEEEEETTEEE-------------------------------------EEECS
T ss_pred             --h------------hhhHHHHhhCCccEEEEECCEEE-------------------------------------EEEec
Confidence              0            00001111222223345555554                                     45553


Q ss_pred             CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415          163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK  236 (604)
Q Consensus       163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~  236 (604)
                      .+...                ......+.+++...++++.|+||.|..+-     .  ....|.+||+|++|.+
T Consensus       100 ~~~~~----------------~~~~~~l~~~~~~~~~dvvi~GHTH~~~~-----~--~~~g~~~iNPGSvg~p  150 (193)
T d2a22a1         100 NQVLP----------------WDDPGSLEQWQRRLDCDILVTGHTHKLRV-----F--EKNGKLFLNPGTATGA  150 (193)
T ss_dssp             TTSSS----------------TTCHHHHHHHHHHHTCSEEEECSSCCCEE-----E--EETTEEEEECCCSSCC
T ss_pred             cCCCC----------------CCCHHHHHHHHhhcCCCEEEEcCccCceE-----E--EECCEEEEECCCCCcC
Confidence            32211                12334688899999999999999987432     2  2446999999999753

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Phosphoesterase-related
domain: Hypothetical protein PF1291
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.80  E-value=2e-08  Score=96.49  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=99.0

Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHh---hcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH
Q 007415            4 PRILLCGDVLGRLNQLFKRVQSVNK---SAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV   80 (604)
Q Consensus         4 ~KILv~GDvhG~~~~l~~kv~~l~~---k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~   80 (604)
                      ++|+|+||+||++..|-+.++.+..   ...++|.||++||++.-... ..+..++|....+ ..++++|.||||.  .+
T Consensus         1 v~I~visDiHg~~~~l~~~l~~i~~~~~~~~~~D~ii~~GDlvd~G~~-~~evi~~l~~l~~-~~~v~~v~GNHD~--~~   76 (251)
T d1nnwa_           1 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPY-PKEVIEVIKDLTK-KENVKIIRGKYDQ--II   76 (251)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSC-HHHHHHHHHHHHH-HSCEEEECCHHHH--HH
T ss_pred             CEEEEEEccccCHHHHHHHHHHHHHhhccCCCCcEEEEecCcCCCCCC-cHHHHHHHHHHhh-cCCEEEEeccHHH--HH
Confidence            5899999999998776555555533   34578999999999754322 2234444432111 2478999999973  23


Q ss_pred             HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhh----cCCCCcc
Q 007415           81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA----EEPGIVD  156 (604)
Q Consensus        81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~----~~~~~vD  156 (604)
                      +......       ....  .....  ...+.... .     +..       +...++++.+.-|..+.    ....+.+
T Consensus        77 ~~~~~~~-------~~~~--~~~~~--~~~~~~~~-~-----~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (251)
T d1nnwa_          77 AMSDPHA-------TDPG--YIDKL--ELPGHVKK-A-----LKF-------TWEKLGHEGREYLRDLPIYLVDKIGGNE  132 (251)
T ss_dssp             HHSCTTC-------SSSG--GGGGS--SCCHHHHH-H-----HHH-------HHHHHHHHHHHHHHTSCSCEEEEETTEE
T ss_pred             Hhccccc-------cccc--hhhhh--ccchhHHH-h-----hHH-------HhhhcCHHHHHHHHhcccceEEeeCCCc
Confidence            3221100       0000  00000  00000000 0     000       00011122233333321    1124578


Q ss_pred             EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415          157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN  235 (604)
Q Consensus       157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn  235 (604)
                      |+++|.+|.........         ....+.......... ..++.|+||.|..+.+       ....+++||.|.+|-
T Consensus       133 ~~~~H~~p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~d~vv~GHtH~~~~~-------~~~~~~~in~Gsvg~  196 (251)
T d1nnwa_         133 VFGVYGSPINPFDGEVL---------AEQPTSYYEAIMRPVKDYEMLIVASPMYPVDA-------MTRYGRVVCPGSVGF  196 (251)
T ss_dssp             EEEESSCSSCTTTCCCC---------SSCCHHHHHHHHGGGTTSSEEEESTTCSEEEE-------EETTEEEEEECCSSS
T ss_pred             EEEEecCccCcccchhh---------hhhHHHHHhhhcccccCceEEEEeccceEEEE-------Eeeeeeccccccccc
Confidence            99999999865432210         123444555544443 4689999998864332       234689999999985


Q ss_pred             c
Q 007415          236 K  236 (604)
Q Consensus       236 ~  236 (604)
                      +
T Consensus       197 ~  197 (251)
T d1nnwa_         197 P  197 (251)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Phosphodiesterase yfcE
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=2.1e-08  Score=92.83  Aligned_cols=69  Identities=7%  Similarity=0.119  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGDYGV   75 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~GNh~   75 (604)
                      .|||+++||+||++..+-+.++.+.+ . ..|.+|++||++....       ....++.+.+   .....++++|.||||
T Consensus         1 mMki~iiSDiHg~~~al~~vl~~~~~-~-~~D~iv~~GDiv~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~GNhD   75 (184)
T d1su1a_           1 MMKLMFASDIHGSLPATERVLELFAQ-S-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERL---NEVAHKVIAVRGNCD   75 (184)
T ss_dssp             CCEEEEECCCTTBHHHHHHHHHHHHH-H-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHH---HTTGGGEEECCCTTC
T ss_pred             CcEEEEEeecCCCHHHHHHHHHHHhh-c-CCCEEEEcCcccccCccchhhhccCcHHHHHHH---HhcCCcEEEecCCCC
Confidence            38999999999999876555554443 3 3899999999975421       1111233333   456678999999998


Q ss_pred             C
Q 007415           76 G   76 (604)
Q Consensus        76 ~   76 (604)
                      .
T Consensus        76 ~   76 (184)
T d1su1a_          76 S   76 (184)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=98.25  E-value=4e-06  Score=81.45  Aligned_cols=71  Identities=10%  Similarity=-0.018  Sum_probs=45.9

Q ss_pred             CEEEEEcCCCC-------------------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh----hhHHHHHHHhccc
Q 007415            4 PRILLCGDVLG-------------------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMNYVEGR   60 (604)
Q Consensus         4 ~KILv~GDvhG-------------------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~----~~~~~~~~~l~g~   60 (604)
                      .+|.+++|+|=                   .+..+-+.++.+++.  .+|+||++||++....    .....+..++...
T Consensus         4 f~f~~isD~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~i~~~--~~DfVv~~GDl~~~~~~~~~~~~~~~~~~~~~~   81 (320)
T d2nxfa1           4 FTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE--RVQCVVQLGDIIDGHNRRRDASDRALDTVMAEL   81 (320)
T ss_dssp             EEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT--TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCCccccccccchhhHHHHHHHHHHHHHHhhC--CCCEEEECCCCCCCCCcchhHHHHHHHHHHHHH
Confidence            58999999992                   133344444555443  4899999999975311    1122333444333


Q ss_pred             CCCCCcEEEEcCCCCC
Q 007415           61 SEIPIPTYFIGDYGVG   76 (604)
Q Consensus        61 ~~~p~ptyfv~GNh~~   76 (604)
                      ...++|+++++|||+.
T Consensus        82 ~~~~~p~~~v~GNHD~   97 (320)
T d2nxfa1          82 DACSVDVHHVWGNHEF   97 (320)
T ss_dssp             HTTCSEEEECCCHHHH
T ss_pred             HHcCCCEEEecccCcc
Confidence            5678999999999984

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Plant purple acid phosphatase, catalytic domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.08  E-value=3.5e-05  Score=77.18  Aligned_cols=204  Identities=15%  Similarity=0.115  Sum_probs=105.3

Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415            3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRSEIPIPTYFIGDYGVG   76 (604)
Q Consensus         3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~------~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~   76 (604)
                      +.+++|+||.+.... ....+..+......+|+||.+||+.-.      ....-+++.+.+... ...+|.+.++||||.
T Consensus         7 p~~F~v~GD~g~~~~-~~~~~~~~~~~~~~pdfvl~~GDl~Y~~~~~~~~~~~wd~~~~~~~~~-~~~~P~~~~~GNHD~   84 (312)
T d2qfra2           7 PYTFGLIGDLGQSFD-SNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERS-VAYQPWIWTAGNHEI   84 (312)
T ss_dssp             CEEEEEECSCCSBHH-HHHHHHHHHHCSSCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHH-HTTSCEEECCCGGGT
T ss_pred             CEEEEEEeeCCCCCc-hHHHHHHHHHcCCCCCEEEECCCCCcCCCCcccchHHHHHHHHHHHHH-hhcceEEEecccccc
Confidence            578999999876544 334444443334468999999998521      111111233344322 234899999999983


Q ss_pred             hH-----------HHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHH
Q 007415           77 AA-----------KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDAL  145 (604)
Q Consensus        77 ~~-----------~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L  145 (604)
                      ..           .+......       +..+..-..+++|     .+.+.++.+..|.-....     ... .++.+-|
T Consensus        85 ~~~~~~~~~~~~~~~~~~f~~-------P~~~~~~~~~~~Y-----sf~~g~v~fi~Lds~~~~-----~~~-~~Q~~WL  146 (312)
T d2qfra2          85 EFAPEINETEPFKPFSYRYHV-------PYEASQSTSPFWY-----SIKRASAHIIVLSSYSAY-----GRG-TPQYTWL  146 (312)
T ss_dssp             CCBGGGTBCSTTHHHHHHCCC-------CGGGGTCSSTTSE-----EEEETTEEEEECCTTSCC-----STT-SHHHHHH
T ss_pred             cccccccccccccchhhhccC-------CccccCCCCCceE-----EEEECCEEEEEeeccccc-----cch-HHHHHHH
Confidence            10           01111100       0000000011111     235678888877643211     111 2234444


Q ss_pred             HH-hhcC-CCCc--cEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccc-cccccCC
Q 007415          146 RA-LAEE-PGIV--DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAR-EPYSNVD  220 (604)
Q Consensus       146 ~~-l~~~-~~~v--DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr-~Py~~~~  220 (604)
                      .+ |++. ....  =|++.|.|+..-......        ........+..|+.+.+-...|+||.|. ||| .|-.+..
T Consensus       147 ~~~L~~~~~~~~~w~iv~~H~P~y~~~~~~~~--------~~~~~r~~l~~l~~~~~Vdlv~~GH~H~-YeRt~p~~~~~  217 (312)
T d2qfra2         147 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFM--------EGEAMRTKFEAWFVKYKVDVVFAGHVHA-YERSERVSNIA  217 (312)
T ss_dssp             HHHHHTCCTTTCCEEEEECSSCSSCCBSTTTT--------TTHHHHHHHHHHHHHTTCSEEEECSSSS-EEEECSEECCC
T ss_pred             HHHHHHHhhcCCCEEEEEccccccccCCCCcc--------cchhHHHHHHHHHHHcCcEEEEEccCcc-eEEEeeccCCc
Confidence            33 3221 2333  378899998764321110        0011234677888999999999999885 465 3433211


Q ss_pred             ------------CcceeEEEEcCCCCC
Q 007415          221 ------------AVHVTRFLGLAPVGN  235 (604)
Q Consensus       221 ------------~~~~TRFI~L~~~gn  235 (604)
                                  ....|..|-.|.-|+
T Consensus       218 ~~~~~~~~~~~~~~~g~vyiv~G~gG~  244 (312)
T d2qfra2         218 YKITNGLCTPVKDQSAPVYITIGDAGN  244 (312)
T ss_dssp             CCSSSCCCSCEECTTSCEEEEECCSCT
T ss_pred             ccccCCccccccCCCcCEEEEECcCCC
Confidence                        123456666676665

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Mammalian purple acid phosphatase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.00  E-value=4.5e-06  Score=81.71  Aligned_cols=72  Identities=18%  Similarity=0.087  Sum_probs=44.1

Q ss_pred             CCEEEEEcCCCCCH---------HHHHHHHHHHHhhcCCCcEEEEecCCCCC---ChhhHHHHHHHh----cccCCCCCc
Q 007415            3 PPRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD---SSELLDEFMNYV----EGRSEIPIP   66 (604)
Q Consensus         3 ~~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~vi~~GDff~~---~~~~~~~~~~~l----~g~~~~p~p   66 (604)
                      ++|++|+||+|+.-         ....+.+.++.++. ++|+||.+||+.-.   .+.....+.+.+    .......+|
T Consensus         4 ~~~F~vigD~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dfvl~~GD~vy~~g~~~~~~~~~~~~~~~~~~~~~~~~~P   82 (302)
T d1utea_           4 ILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTL-GADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVP   82 (302)
T ss_dssp             CEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHH-CCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCC
T ss_pred             CeEEEEEecCCCCCCcccccHHHHHHHHHHHHHHhhC-CCCEEEECCCCCCCCCCCcccHHHHHHHHHHHhhhhhhcCCc
Confidence            47999999998631         12233444444444 58999999998521   111122333332    222346789


Q ss_pred             EEEEcCCCC
Q 007415           67 TYFIGDYGV   75 (604)
Q Consensus        67 tyfv~GNh~   75 (604)
                      +|++.||||
T Consensus        83 ~~~~~GNHD   91 (302)
T d1utea_          83 WHVLAGNHD   91 (302)
T ss_dssp             EEECCCHHH
T ss_pred             eEEeecccc
Confidence            999999997

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DNA double-strand break repair nuclease
domain: Mre11
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.00  E-value=3.4e-06  Score=83.58  Aligned_cols=73  Identities=19%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             CEEEEEcCCC-CC-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCCcEE
Q 007415            4 PRILLCGDVL-GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPTY   68 (604)
Q Consensus         4 ~KILv~GDvh-G~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~---~~~~~~~~~~l~g~~~~p~pty   68 (604)
                      ||||.++|+| |.           +...++++-....+. .+|+||++||+|...   ......+.+++......++|+|
T Consensus         1 Mkilh~SDlHlG~~~~~~~~~~~~~~~~l~~iv~~a~~~-~~D~vli~GDlfd~~~~~~~~~~~~~~~~~~l~~~~i~v~   79 (333)
T d1ii7a_           1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVF   79 (333)
T ss_dssp             CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             CEEEEEecCcCCCCCcCchhHHHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHhhHHhcCCcEE
Confidence            8999999999 21           122333333332333 479999999998642   2233344455544456789999


Q ss_pred             EEcCCCCCh
Q 007415           69 FIGDYGVGA   77 (604)
Q Consensus        69 fv~GNh~~~   77 (604)
                      +++||||..
T Consensus        80 ~i~GNHD~~   88 (333)
T d1ii7a_          80 AIEGNHDRT   88 (333)
T ss_dssp             EECCTTTCC
T ss_pred             EeCCCCccc
Confidence            999999964

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Hypothetical protein aq 1666
domain: Hypothetical protein aq 1666
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.85  E-value=6e-05  Score=69.85  Aligned_cols=156  Identities=10%  Similarity=-0.006  Sum_probs=87.7

Q ss_pred             EEEEEcCCC-CC-----------HHHHH-HHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEc
Q 007415            5 RILLCGDVL-GR-----------LNQLF-KRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIG   71 (604)
Q Consensus         5 KILv~GDvh-G~-----------~~~l~-~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~   71 (604)
                      +|++++|.| |.           .+..- .-++.+++.-++-|.|+++|||.-.... .+++.++|   .+++...++|.
T Consensus         3 mi~fiSD~Hfgh~~i~~~r~f~~~~~~~~~ii~~wn~~V~~~D~v~~LGD~~~~~~~-~~~~~~~l---~~L~g~~~lI~   78 (188)
T d1xm7a_           3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFND-KNEYLRIW---KALPGRKILVM   78 (188)
T ss_dssp             CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCC-TTSHHHHH---HHSSSEEEEEC
T ss_pred             eEEEEeCcCCCCcchhhcCCCCCHHHHHHHHHHHHHhhcCCCCEEEEeCCccccCCC-HHHHHHHH---HHCCCceEEEe
Confidence            699999999 21           11111 1356667766788999999998522111 12245565   34556789999


Q ss_pred             CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC
Q 007415           72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE  151 (604)
Q Consensus        72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~  151 (604)
                      ||||.....+..            ....+....      .++.+                                    
T Consensus        79 GNHD~~~~~~~~------------~~~~~~~~~------~~~~~------------------------------------  104 (188)
T d1xm7a_          79 GNHDKDKESLKE------------YFDEIYDFY------KIIEH------------------------------------  104 (188)
T ss_dssp             CTTCCCHHHHTT------------TCSEEESSE------EEEEE------------------------------------
T ss_pred             cCCCchhhhhhh------------chhhHHHHH------HHhhh------------------------------------
Confidence            999964221110            001111110      01111                                    


Q ss_pred             CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415          152 PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA  231 (604)
Q Consensus       152 ~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~  231 (604)
                       .+-.|+|||.|+..-... .          .......+.++..+.+..++++||.|..........  .....|+++.|
T Consensus       105 -~g~~i~l~H~P~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~lhGH~H~~~~~~~~~~--~~~~~~~~nV~  170 (188)
T d1xm7a_         105 -KGKRILLSHYPAKDPITE-R----------YPDRQEMVREIYFKENCDLLIHGHVHWNREGIKCAC--KDYRIECINAN  170 (188)
T ss_dssp             -TTEEEEEESSCSSCSSCC-S----------CHHHHHHHHHHHHHTTCSEEEECCCCCCSCC--CCT--TSSSCCEEECB
T ss_pred             -CCeEEEEEeCCCcccccc-c----------cccchhHHHHHHHhcCceEEEEeeccCCcccccccc--ccCCCCEEEee
Confidence             234688999998643210 0          112344677888999999999999886544322222  23346677766


Q ss_pred             C
Q 007415          232 P  232 (604)
Q Consensus       232 ~  232 (604)
                      -
T Consensus       171 v  171 (188)
T d1xm7a_         171 V  171 (188)
T ss_dssp             G
T ss_pred             e
Confidence            4

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: lambda ser/thr protein phosphatase
species: Bacteriophage lambda [TaxId: 10710]

Probab=97.83  E-value=6.1e-06  Score=77.93  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHH
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA   84 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l   84 (604)
                      ||+|+|||||+++.|.+.++++.... +-|.+|++||++.-.++. .+..+++..     .-+.+|-||||.  .++..+
T Consensus        14 rI~vIgDIHG~~~~L~~lL~~i~~~~-~~d~lv~lGD~vDrGp~s-~~vl~~l~~-----~~~~~i~GNHE~--~ll~~~   84 (219)
T d1g5ba_          14 NIWVVGDLHGCYTNLMNKLDTIGFDN-KKDLLISVGDLVDRGAEN-VECLELITF-----PWFRAVRGNHEQ--MMIDGL   84 (219)
T ss_dssp             CEEEECCCTTCHHHHHHHHHHHTCCT-TTCEEEECSCCSSSSSCH-HHHHGGGGS-----TTEEECCCHHHH--HHHHHH
T ss_pred             eEEEEEecccCHHHHHHHHHHcCCCC-CCCEEEEeCCccccCccH-HHHHHHhhc-----cccccccCcHHH--HHHHHH
Confidence            79999999999999888887775333 469999999997654442 234566632     347899999973  344444

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.00014  Score=67.06  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=60.0

Q ss_pred             cccCCCCCCCcceEEEECCE---EEEEec--C---CCCCCCeEEEEeccc-cCCCCCCCHHHHHHHHHHHHHHHHHHH-h
Q 007415          392 WFCLSSPSVESHLIVSVGEY---YYCALP--K---GPLVEDHVLVIPVEH-VPNTISTSPECEKELGRFQNSLMMYYK-N  461 (604)
Q Consensus       392 ~FC~~~~~~~~~lIvs~g~~---~yl~l~--k---gpl~~GH~LIiP~~H-~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~  461 (604)
                      .+.....+.|...|++.+.+   -|+.+|  |   .|+..-|+|+||.+| +.|+.+|.++-..=+.++.+..++.+. .
T Consensus        30 v~nIL~~~~E~e~i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~~~  109 (192)
T d1vlra1          30 VYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKR  109 (192)
T ss_dssp             HHHHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccceeEEeCCCCCCCEEEecccccCCCcccCeEEEEEEccCCCCChHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            44444555666777777644   366666  3   489999999999988 999999987655555555444444332 2


Q ss_pred             cCC---c-eEEEeeccCCCCeeEEEEEecCcc
Q 007415          462 QGK---E-AVFFEWLSKRGTHANLQAVPIPTS  489 (604)
Q Consensus       462 ~g~---~-~v~~E~~~~~~~H~HihvvPvp~~  489 (604)
                      .|.   + -++|- ......|+|+||+-++..
T Consensus       110 ~gi~~~~~Rig~H-~~PSv~HLHlHvi~~~~~  140 (192)
T d1vlra1         110 YQVTGDRLRVYLH-YLPSYYHLHVHFTALGFE  140 (192)
T ss_dssp             HCCCGGGEEEEEE-SSCSSSSCEEEEEETTSC
T ss_pred             hCCChhheEEEEE-CCCCEeeeEEEEEeccCC
Confidence            232   1 23344 333457999999987544

>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0037  Score=62.54  Aligned_cols=114  Identities=14%  Similarity=0.026  Sum_probs=62.0

Q ss_pred             CEEEEEcCCCCCHH----------HHHHHHHHHHh---hcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCCc
Q 007415            4 PRILLCGDVLGRLN----------QLFKRVQSVNK---SAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIP   66 (604)
Q Consensus         4 ~KILv~GDvhG~~~----------~l~~kv~~l~~---k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~p   66 (604)
                      ..||.+.|+||+|.          .+...+..+.+   ..++--++|-+||+|......    -....+.+   ..+++-
T Consensus         9 ltILhtnD~Hg~l~~~~~~~~g~a~~~~~i~~~r~~~~~~~~~~l~ldaGD~~~gs~~s~~~~g~~~~~~m---n~~g~D   85 (337)
T d1usha2           9 ITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM---NLVGYD   85 (337)
T ss_dssp             EEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCSSSCHHHHTTTTHHHHHHH---HHHTCC
T ss_pred             EEEEEEeecccCCcCCCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcccCHHHHHhCChHHHHHH---HhcCCe
Confidence            57999999999763          23333443332   244434555599997642210    01122222   233344


Q ss_pred             EEEEcCCCCCh--HHHHHHHhccccccCcccCCceecCCEEEcC-------CCCeEEEcCcEEEEEecccC
Q 007415           67 TYFIGDYGVGA--AKVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQS  128 (604)
Q Consensus        67 tyfv~GNh~~~--~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~~~  128 (604)
                       ..+.||||..  .+.+..+-..       .....++.|++.-.       ..-|++.+|+||+.+|-...
T Consensus        86 -a~~~GNHEfd~G~~~l~~~~~~-------~~~p~l~aN~~~~~~~~~~~~py~I~~~~g~kVgviG~~~~  148 (337)
T d1usha2          86 -AMAIGNHEFDNPLTVLRQQEKW-------AKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTD  148 (337)
T ss_dssp             -EEECCGGGGSSCHHHHHHHHHH-------CSSCEECSSEEETTTTEESSBSEEEEEETTEEEEEEEEECT
T ss_pred             -EEEechhhhccchHHHHHHHHh-------cCceEeeccccccccccccccceeeeecCCeEEEeeccccc
Confidence             4667999964  2233332111       12346778876433       22345689999999997643

>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Candida albicans [TaxId: 5476]

Probab=96.87  E-value=0.0077  Score=59.79  Aligned_cols=118  Identities=8%  Similarity=-0.090  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh-----H-HHHHHHhcc
Q 007415            2 SPPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-----L-DEFMNYVEG   59 (604)
Q Consensus         2 ~~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-----~-~~~~~~l~g   59 (604)
                      .+++||.+.|+||.+.                .+.+.+++..++.++--++|-+||+|....-.     . ....+++  
T Consensus        10 ~~l~iLhtnD~Hg~l~~~~~~~~~~~~~gg~a~~~~~~~~~~~~~~~~~llldaGD~~~Gt~~~~~~~~~G~~~~~~m--   87 (322)
T d3c9fa2          10 NDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIF--   87 (322)
T ss_dssp             CSEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTTTTTHHHH--
T ss_pred             CEEEEEEEeccccCCCCccccccccCccccHHHHHHHHHHHHHhcCCCEEEEECCccCCCCchhhhcccCChHHHHHH--
Confidence            4678999999999653                33444444433444433555699997532100     0 0112333  


Q ss_pred             cCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcCC----------CCeEEEc--CcEEEEEec
Q 007415           60 RSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLH--GLSVAYLSG  125 (604)
Q Consensus        60 ~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~----------~gv~~~~--GlrIa~lgG  125 (604)
                       ..+++. +++.||||-..  ..+..+......    .+...++.|+.+...          ..+++..  +++|+++|-
T Consensus        88 -n~lgyD-a~t~GNHEfd~g~~~l~~~~~~~~~----~~fp~l~aNv~~~~~~~~~~~~~~~y~i~~~~~~~i~i~g~~~  161 (322)
T d3c9fa2          88 -IKQDYD-LLTIGNHELYLWENSKQEYETVVNH----FQDKYVCSNVDIRLDNGLFVPLGLKYKYFTTPIRGIRVMAFGF  161 (322)
T ss_dssp             -TTSCCS-EECCCGGGSSSHHHHHHHHHHHHHH----TTTTBBCSSEEEECTTSCEEESSBSCEEEECTTTCCEEEEEEC
T ss_pred             -hccCCc-EEeecceecccchHHHHHHHHHHHh----cCCCEEeeeEEecCCCCcccccCCceEEEEECCCcEEEEEEee
Confidence             233333 67779999532  122222110000    123468889865432          2234554  556666655


Q ss_pred             cc
Q 007415          126 RQ  127 (604)
Q Consensus       126 ~~  127 (604)
                      ..
T Consensus       162 ~~  163 (322)
T d3c9fa2         162 LF  163 (322)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.0094  Score=58.55  Aligned_cols=112  Identities=11%  Similarity=-0.046  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCCCHH-----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCC
Q 007415            4 PRILLCGDVLGRLN-----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSE   62 (604)
Q Consensus         4 ~KILv~GDvhG~~~-----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~   62 (604)
                      +.||.++|+||++.                 .+...++.+.++ +|--++|-+||+|......    -....+.++   .
T Consensus         3 l~IlhtnD~Hg~l~~~~~~~~~~~~~~gG~ar~~t~i~~~r~~-~~~~l~ldaGD~~~Gs~~~~~~~g~~~~~~~n---~   78 (302)
T d2z1aa2           3 LTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWAR-AKNPLFLDAGDVFQGTLYFNQYRGLADRYFMH---R   78 (302)
T ss_dssp             EEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHH-SSSEEEEECSCCSSSSHHHHHHTTHHHHHHHH---H
T ss_pred             EEEEEEcccccCcccccccccCCccccCcHHHHHHHHHHHHHh-CCCeEEEEcCCCCCCCHhHhhhcchhHHHHHH---h
Confidence            57999999999764                 455555555444 3557899999998653210    001122222   2


Q ss_pred             CCCcEEEEcCCCCCh--HHHHHHHhccccccCcccCCceecCCEEEcCC---------CCeEEEcCcEEEEEeccc
Q 007415           63 IPIPTYFIGDYGVGA--AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQ  127 (604)
Q Consensus        63 ~p~ptyfv~GNh~~~--~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~---------~gv~~~~GlrIa~lgG~~  127 (604)
                      +++ -..+.||||-.  ...+..+...       .....++.|+.+-+.         .-+++.+|+||+.+|-..
T Consensus        79 ~gy-Da~~~GNHEfd~G~~~l~~~~~~-------~~~p~l~aNi~~~~~~~~~~~~~~y~i~~~~g~kIgiiG~~t  146 (302)
T d2z1aa2          79 LRY-RAMALGNHEFDLGPGPLADFLKG-------ARFKVVSANVDASREPRLKGLFAPYAVVVVGGERVGIIGLTT  146 (302)
T ss_dssp             TTC-CEEECCGGGGTTCHHHHHHHHTT-------CCSEEECTTEECTTCGGGTTSCBSEEEEEETTEEEEEEEEEC
T ss_pred             ccc-ccccccchhhhcChhHHHHHhhh-------cccceeEeeeeccccccccCccceeEEEEECCeEEEEEeccc
Confidence            323 36788999854  2334333211       223578999976432         123467899999999774

>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.36  E-value=0.012  Score=53.04  Aligned_cols=100  Identities=13%  Similarity=0.157  Sum_probs=62.8

Q ss_pred             CCCCcccCCCCCCCcceEEEECC-----EEEEEecCCCCC---------------------CC-e-EEEEeccccCCCCC
Q 007415          388 SKECWFCLSSPSVESHLIVSVGE-----YYYCALPKGPLV---------------------ED-H-VLVIPVEHVPNTIS  439 (604)
Q Consensus       388 ~~~C~FC~~~~~~~~~lIvs~g~-----~~yl~l~kgpl~---------------------~G-H-~LIiP~~H~~s~~~  439 (604)
                      ...|+||-.|......-+..+.+     .+.++-+++|..                     .| | ++|---.|..++.+
T Consensus        38 ~~~CPfCpGne~~~~~~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l~~  117 (173)
T d1z84a1          38 PSSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSD  117 (173)
T ss_dssp             -CCCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGG
T ss_pred             cccCCCCCCCcccCCCcceeccccCCCceEEEeCCCCcccccccccccccCcCcceeecccccceeeEEeCccccCChhh
Confidence            45899998774322222333321     355666788742                     12 3 44447799999999


Q ss_pred             CCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEee---ccCC-CCeeEEEEEecC
Q 007415          440 TSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEW---LSKR-GTHANLQAVPIP  487 (604)
Q Consensus       440 l~~~~~~Ei~~-~~~~L~~~~~~~g~-~~v~~E~---~~~~-~~H~HihvvPvp  487 (604)
                      ++.+.+..+.. +++.++.+.+..+. -|.+||+   .++. ..|-|.|++-.|
T Consensus       118 ~~~e~i~~v~~~~~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl~HPH~QI~a~p  171 (173)
T d1z84a1         118 IDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALP  171 (173)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeecCccCccCCCCCCeeeeeec
Confidence            99998777765 56666666554444 3566772   2222 479999999765

>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Serine/threonine protein phosphatase 5, PP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0056  Score=60.82  Aligned_cols=69  Identities=17%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcC-CC--cEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAG-PF--DAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~G-pf--D~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .|.||||+||+|..|+.-++    +.| |.  .-.|.+||...-++...+-+.-++.=....|--+|.+-||||..
T Consensus        61 pv~VvGDiHGq~~DL~~if~----~~g~p~~~~~ylFLGDYVDRG~~slEvi~lL~~lKi~yP~~v~LLRGNHE~~  132 (324)
T d1s95a_          61 KITVCGDTHGQFYDLLNIFE----LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD  132 (324)
T ss_dssp             EEEEECCCTTCHHHHHHHHH----HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred             CEEEEEECCCCHHHHHHHHH----HCCCCCCCCeEEEecccccCcCcceeehHHHHHHHHhCCCcEEeccCCcccc
Confidence            78999999999998875544    334 33  24788999976655444443333332344677899999999974

>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-1 (PP-1)
species: Human (Homo sapiens), beta isoform [TaxId: 9606]

Probab=95.57  E-value=0.0062  Score=59.69  Aligned_cols=69  Identities=17%  Similarity=0.372  Sum_probs=48.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .|.|+||+||++..|+.-++.    .|  +-.-.|.+||...-++...+-+.-++.=....|--+|.+-||||.+
T Consensus        53 pv~VvGDiHG~~~DL~~if~~----~g~p~~~~ylFLGDYVDRG~~slE~i~lL~aLKi~~P~~v~lLRGNHE~~  123 (294)
T d1jk7a_          53 PLKICGDIHGQYYDLLRLFEY----GGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA  123 (294)
T ss_dssp             SEEEECBCTTCHHHHHHHHHH----HCCTTSSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             CeEEEEECCCChHhHHHHHhh----cCCCccceEEeeccccCCCccchHHHHHHHHHHhhCCCeEEEecCCcccc
Confidence            489999999999998865542    33  3455788999976544434433333332355778899999999975

>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0068  Score=59.27  Aligned_cols=71  Identities=14%  Similarity=0.213  Sum_probs=48.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      .|.|+||+||++..|+.-++...  ..+-.-.|.+||+..-++...+-+.-++.=....|--+|.+-||||..
T Consensus        46 pv~VvGDlHG~~~DL~~if~~~g--~p~~~~ylFLGDYVDRG~~slEvl~lL~alKi~~P~~v~lLRGNHE~~  116 (288)
T d3c5wc1          46 PVTVCGDVHGQFHDLMELFRIGG--KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESR  116 (288)
T ss_dssp             SEEEECBCTTCHHHHHHHHHHHC--CTTTSCEEECSCCCCSSSSHHHHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred             CeEEEeeCCCCHHHHHHHHHhcC--CCccceEEecCcccCCCCcceeHHHHHHHHHhhCCCeEEEeccCCccc
Confidence            48999999999999886665321  113345788999976544434434333333355778899999999975

>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.01  Score=61.42  Aligned_cols=69  Identities=14%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            5 RILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         5 KILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      -|.||||+||+|..|+.-++.    .|  +-.-.|.+||+..-++...+-+.=++.-....|-.+|.+-||||..
T Consensus        71 Pv~VvGDIHGq~~DLl~If~~----~G~P~~~~yLFLGDYVDRG~~SlEvlllL~aLKi~yP~~V~LLRGNHE~~  141 (473)
T d1auia_          71 PVTVCGDIHGQFFDLMKLFEV----GGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR  141 (473)
T ss_dssp             SEEEECCCTTCHHHHHHHHHH----HCCTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             CEEEEEeCCCCHHHHHHHHHH----cCCCCcceEEecCccccCCcccHHHHHHHHHHHHhCCCeEEEeCCCCccH
Confidence            389999999999988865542    33  2345678999976544434433333333345677899999999964

>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.15  Score=45.57  Aligned_cols=62  Identities=15%  Similarity=0.013  Sum_probs=41.1

Q ss_pred             eEEEE-eccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCceEEEeec---cCC-CCeeEEEEEecC
Q 007415          425 HVLVI-PVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGKEAVFFEWL---SKR-GTHANLQAVPIP  487 (604)
Q Consensus       425 H~LIi-P~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~g~~~v~~E~~---~~~-~~H~HihvvPvp  487 (604)
                      |-+|| --.|..++.+++.+.+..+.. ++..+.+.-+...+ +.+||+.   ++. ..|-|.|++-.|
T Consensus       105 heVIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~~l~~~i~y-v~iFkN~G~~aGaSl~HPH~QI~a~p  172 (176)
T d1guqa1         105 SRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPW-VQVFENKGAAMGCSNPHPGGQIWANS  172 (176)
T ss_dssp             EEEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHCSE-EEEEEEESGGGTCSCCSSEEEEEEES
T ss_pred             eeEEEECcccccChhhCCHHHHHHHHHHHHHHHHHhcCCCCE-EEEEeecCccccCCCCCCCeeeeecC
Confidence            55555 889999999999988777764 45555554433444 4456622   222 479999998755

>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.90  E-value=0.17  Score=48.30  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415            2 SPPRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGV   75 (604)
Q Consensus         2 ~~~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~   75 (604)
                      -.||||++|||-|+  .+.+.+.+..|.++.+ .|+||+=|.-    ++.....   ..++++    .++. +++.|||-
T Consensus         3 ~~MkILfiGDIvG~~GR~~v~~~Lp~Lr~~~~-iDfVIaNgENaa~G~Git~k~---~~eL~~----~GvD-vIT~GNH~   73 (281)
T d1t71a_           3 NSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQ-ADLVIVNAENTTHGKGLSLKH---YEFLKE----AGVN-YITMGNHT   73 (281)
T ss_dssp             CCCEEEEECEEBHHHHHHHHHTTHHHHHHHHT-CSEEEEECTBTTTTSSCCHHH---HHHHHH----HTCC-EEECCTTT
T ss_pred             ccceEEEEEccCCHHHHHHHHHHhHHHHHHhC-CCEEEECCccCCCCcCCCHHH---HHHHHH----hCCc-EEEcCchh
Confidence            36999999999997  4556666777777774 7999999985    3333332   334432    1222 57899996


Q ss_pred             -ChHHHHHHHh
Q 007415           76 -GAAKVLLAAS   85 (604)
Q Consensus        76 -~~~~~l~~l~   85 (604)
                       +..++++.+.
T Consensus        74 wd~kei~~~i~   84 (281)
T d1t71a_          74 WFQKLDLAVVI   84 (281)
T ss_dssp             TCCGGGHHHHT
T ss_pred             hhchhhHHHHh
Confidence             4456666664

>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Putative phosphatase DR1281
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.97  E-value=0.81  Score=42.91  Aligned_cols=102  Identities=18%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      ||||++||+-|+  .+.+-+.+..|.+   .+|+||+=|.-    ++.....   ..++++    .++. +++.|||-=+
T Consensus         1 MkILfiGDIvG~~Gr~~v~~~Lp~lk~---~~DfVIaNgENaa~G~Git~~~---~~~l~~----~GvD-viT~GNH~wd   69 (255)
T d1t70a_           1 MRVLFIGDVFGQPGRRVLQNHLPTIRP---QFDFVIVNMENSAGGFGMHRDA---ARGALE----AGAG-CLTLGNHAWH   69 (255)
T ss_dssp             CEEEEECCBBHHHHHHHHHHHHHHHGG---GCSEEEEECTBTTTTSSCCHHH---HHHHHH----HTCS-EEECCTTTTS
T ss_pred             CeEEEEecCCCHHHHHHHHHHhHHHHh---hCCEEEECCccCCCCcCCCHHH---HHHHHH----cCCc-EEEcCchhhc
Confidence            899999999997  3445555666633   37999999985    3333333   334432    1222 5789999533


Q ss_pred             -HHHHHHHhccccccCcccCCceecC-CEE--EcCCCCeE--EEcCcEEEEEe
Q 007415           78 -AKVLLAASKNSANQGFKMDGFKVTD-NLF--WLKGSGNF--TLHGLSVAYLS  124 (604)
Q Consensus        78 -~~~l~~l~~~~~~~~~~~~g~ei~~-Nl~--~Lg~~gv~--~~~GlrIa~lg  124 (604)
                       .++++.+..+.        -.-+.| |..  ...+.|..  +.+|.+|+.+.
T Consensus        70 kkei~~~i~~~~--------~~ilRP~N~p~~~~PG~G~~i~~~~g~ki~ViN  114 (255)
T d1t70a_          70 HKDIYPMLSEDT--------YPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVN  114 (255)
T ss_dssp             STTHHHHHHTTC--------SCEECCSCCCCTTCSSCSEEEEECSSSEEEEEE
T ss_pred             chhHHHHHhhcc--------hhhhhhhccCCCCCCCceEEEEeeccCcEEEEE
Confidence             44566554210        111333 321  12234443  45788888765

>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TTHA0625-like
domain: Hypothetical protein TTHA0625
species: Thermus thermophilus [TaxId: 274]

Probab=84.33  E-value=1  Score=42.10  Aligned_cols=70  Identities=16%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415            4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA   77 (604)
Q Consensus         4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~   77 (604)
                      ||||++||+-|+  .+.+.+.+..|-++   +|+||+=|.=    ++.....   ..++++    .++. +++.|||-=+
T Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~Lk~~---~DfVIaNgENaa~G~Git~k~---~~~L~~----~GVD-vIT~GNH~wd   69 (252)
T d2z06a1           1 MRVLFIGDVMAEPGLRAVGLHLPDIRDR---YDLVIANGENAARGKGLDRRS---YRLLRE----AGVD-LVSLGNHAWD   69 (252)
T ss_dssp             CEEEEECCBCHHHHHHHHHHHHHHHGGG---CSEEEEECTTTTTTSSCCHHH---HHHHHH----HTCC-EEECCTTTTS
T ss_pred             CeEEEEeccCCHHHHHHHHHHhHHHHhh---CCEEEEeeeccCCCcCCCHHH---HHHHHH----hCCC-EEEcCccccc
Confidence            899999999996  44555666666433   6999998874    3333332   334443    1222 5789999644


Q ss_pred             -HHHHHHH
Q 007415           78 -AKVLLAA   84 (604)
Q Consensus        78 -~~~l~~l   84 (604)
                       .++++-+
T Consensus        70 kkei~~~i   77 (252)
T d2z06a1          70 HKEVYALL   77 (252)
T ss_dssp             CTTHHHHH
T ss_pred             chhhhhhh
Confidence             2344433