Citrus Sinensis ID: 007452

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600---
MVENTNKKQKKGSISEGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPLDDDSDLEYELEAFPEVSSEASTEAAACVKVLIASGLPSDSSLPNSSMVEAPLTINIPNGQSLRASTENSQPSSLMQGMNITVPVAVQKVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASSVANQSKLSPVGSPGSAVKSRVPLKKMPAKSNFGADSSIRAAAVAAGARIVTPSDAASLLKVAQAKKAIHIMPSGVSSIKSPSAGSASAHLEASPTTRYVRPSLPAVPSSSSPAVTSSASHPGLVKAALPKVQHNTSCEQTNAVVSVPATELQLKPEVKAGEEIKVSGCSVSGNEPSKEIQLDLPKLDAEFKNQAAVAENPDSSSNMEIVENGQVQSNGNQPEGNGNQNGNDDKMVDSPVANGENQAAVKQKNSGLPQSSNNEEAELPTLVIDKCSSKNLEV
ccccccccccccccccccHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHccccccccHHHcHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccc
ccccccccccEEEEcHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHccHHHcccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEcccccccccccEEEEcccccccccccccEEEcccccEEEccccEEEEEccccccccEEEEcccEEccccccccccccccccccccccccccccccccHHHcccccccccccHHcccccEEEcccccccccc
mventnkkqkkgsisegdVSSLLQRYTANTVLALLQEVaqfpdvkldWNALVKKTSTGISNAREYQMLWRHLAYRNTLFdklednaqpldddsdleyeleafpevsseaSTEAAACVKVLIAsglpsdsslpnssmveapltinipngqslrastensqpsslmqgmniTVPVavqkvplpaptpevldangliggsmpprkkrkpwtaeEDLELISAVQKcgegnwanilrgdfkwdrtASQLSQRWNILRKKhgnvilgsnssgsqlSEAQLAARHAMSLALdmpvknitasctnttagttssatmnnpvpstanaeassvanqsklspvgspgsavksrvplkkmpaksnfgadsSIRAAAVAAGARIVTPSDAASLLKVAQAKKAihimpsgvssikspsagsasahleaspttryvrpslpavpsssspavtssashpglvkaalpkvqhntsceqtnavvsvpatelqlkpevkageeikvsgcsvsgnepskeiqldlPKLDAEFKNQaavaenpdsssnmeivengqvqsngnqpegngnqngnddkmvdspvangenqaavkqknsglpqssnneeaelptlvidkcssknlev
mventnkkqkkgsisegdvSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPLDDDSDLEYELEAFPEVSSEASTEAAACVKVLIASGLPSDSSLPNSSMVEAPLTINIPNGQSLRASTENSQPSSLMQGMNITVPVAVQKVPLPAPTPEVLdangliggsmpprkkrkpWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTtagttssatmnnPVPSTANAEASSVANqsklspvgspgsavksrvplkkmpaksnfgadSSIRAAAVAAGARIVTPSDAASLLKVAQAKKAIHIMPSGVSSIKSPSAGSASAHLEASPTTRYVRPSLPAVPSSSSPAVTSSASHPGLVKAALPKVQHNTSCEQTNAVVSVPATELQLKPEVKAGEEIKVsgcsvsgnepskEIQLDLPKLDAEFKNQAAVaenpdsssnMEIVENGQVQSNGNQPEGNGNQNGNDDKMVDSPVANGENQAAVKqknsglpqssnneeaelptlvidkcssknlev
MVENTNKKQKKGSISEGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPldddsdleyeleAFPevsseasteaaaCVKVLIASGLPSDSSLPNSSMVEAPLTINIPNGQSLRASTENSQPSSLMQGMNITVPVAVQKVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNItasctnttagttssatmnnPVPSTANAEASSVANQSKLSPVGSPGSAVKSRVPLKKMPAKSNFgadssiraaavaagarivTPSDAASLLKVAQAKKAIHIMpsgvssikspsagsasaHLEASPTTRYvrpslpavpsssspavtssashpGLVKAALPKVQHNTSCEQTNAVVSVPATELQLKPEVKAGEEIKVSGCSVSGNEPSKEIQLDLPKLDAEFKNQAAVAENPDSSSNMEIVENGQVQSngnqpegngnqngnDDKMVDSPVANGENQAAVKQKNSGLPQSSNNEEAELPTLVIDKCSSKNLEV
*********************LLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKL*******************************AACVKVLIA**********************************************ITVPVAVQ**********************************EDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVIL*******************************************************************************************************AVAAGARIVTP**AASLLKVAQA**AI*********************************************************************************************************************************************************************************************************************
***************EGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPLDDDSDLEY*****************************************************************************************************************EDLELISAVQKCGEGNWANILRGDFK******QLSQRWNIL****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
****************GDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPLDDDSDLEYELEA***********AAACVKVLIASGLPSDSSLPNSSMVEAPLTINIPNGQS***********SLMQGMNITVPVAVQKVPLPAPTPEVLDANGLIGGSM**********AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVP******************************PLKKMPAKSNFGADSSIRAAAVAAGARIVTPSDAASLLKVAQAKKAIHIMPSGV*******************TTRYVRPS******************PGLVKAALPKVQHNTSCEQTNAVVSVPATELQLKPEVKAGEEIKVSGCSVSGNEPSKEIQLDLPKLDAEFKNQAAVAENPDSSSNMEIVENGQVQSNGNQPEGNGNQNGNDDKMVDSPVANGENQ****************EEAELPTLVIDKCSSKNLEV
********QKKGSISEGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPLDDDSDLEYELEAFPEV****************************************************************************************************PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKH***************************************************************************************************************************************************************************************************************NAVVSVPATELQLKPEVKAGEEIKVS*C*******SKEIQLDLPKLDAEFKNQAAVAENPDSSSNMEIVENGQVQSN***********************************************ELPTLVIDKCSS*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVENTNKKQKKGSISEGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKLEDNAQPLDDDSDLEYELEAFPEVSSEASTEAAACVKVLIASGLPSDSSLPNSSMVEAPLTINIPNGQSLRASTENSQPSSLMQGMNITVPVAVQKVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASSVANQSKLSPVGSPGSAVKSRVPLKKMPAKSNFGADSSIRAAAVAAGARIVTPSDAASLLKVAQAKKAIHIMPSGVSSIKSPSAGSASAHLEASPTTRYVRPSLPAVPSSSSPAVTSSASHPGLVKAALPKVQHNTSCEQTNAVVSVPATELQLKPEVKAGEEIKVSGCSVSGNEPSKEIQLDLPKLDAEFKNQAAVAENPDSSSNMEIVENGQVQSNGNQPEGNGNQNGNDDKMVDSPVANGENQAAVKQKNSGLPQSSNNEEAELPTLVIDKCSSKNLEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query603 2.2.26 [Sep-21-2011]
P70371421 Telomeric repeat-binding yes no 0.086 0.123 0.444 5e-05
O55036438 Telomeric repeat-binding no no 0.084 0.116 0.452 0.0001
P54274439 Telomeric repeat-binding yes no 0.084 0.116 0.452 0.0001
O13493324 Myb-like DNA-binding prot N/A no 0.116 0.216 0.358 0.0005
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1 SV=1 Back     alignment and function desciption
 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 201 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRK 253
           R+KR+ W  EED  L   V+K GEGNWA IL   +K+ +RT+  L  RW  +++
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKIL-SHYKFNNRTSVMLKDRWRTMKR 416
Binds the telomeric double-stranded TTAGGG repeat and negatively regulates telomere length. Involved in the regulation of the mitotic spindle. Component of the shelterin complex (telosome) that is involved in the regulation of telomere length and protection. Shelterin associates with arrays of double-stranded TTAGGG repeats added by telomerase and protects chromosome ends; without its protective activity, telomeres are no longer hidden from the DNA damage surveillance and chromosome ends are inappropriately processed by DNA repair pathways.
Mus musculus (taxid: 10090)
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus GN=TERF1 PE=2 SV=1 Back     alignment and function description
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1 SV=3 Back     alignment and function description
>sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rca-1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query603
302142071641 unnamed protein product [Vitis vinifera] 0.965 0.907 0.545 1e-155
359492495606 PREDICTED: uncharacterized protein LOC10 0.938 0.933 0.544 1e-153
255545976608 DNA binding protein, putative [Ricinus c 0.875 0.868 0.561 1e-149
224067082677 predicted protein [Populus trichocarpa] 0.953 0.849 0.490 1e-140
147772117598 hypothetical protein VITISV_010188 [Viti 0.903 0.911 0.481 1e-121
449470068659 PREDICTED: uncharacterized protein LOC10 0.786 0.719 0.502 1e-115
449511444659 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.786 0.719 0.502 1e-115
356518433606 PREDICTED: uncharacterized protein LOC10 0.925 0.920 0.399 4e-96
449437282385 PREDICTED: uncharacterized protein LOC10 0.601 0.942 0.510 5e-88
449529210371 PREDICTED: uncharacterized protein LOC10 0.587 0.954 0.514 4e-86
>gi|302142071|emb|CBI19274.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 347/636 (54%), Positives = 420/636 (66%), Gaps = 54/636 (8%)

Query: 7   KKQKKGSISEGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQ 66
           K +KKG+ISE DVS+LLQRYT   VLALLQEVAQ PDVK+DWNALV KTSTGISNAREYQ
Sbjct: 6   KMRKKGTISEEDVSALLQRYTPTAVLALLQEVAQLPDVKIDWNALVNKTSTGISNAREYQ 65

Query: 67  MLWRHLAYRNTLFDKLEDNAQPLDDDSDLEYELEAFPEVSSEASTEAAACVKVLIASGLP 126
           MLWRHLAY + L +KLED AQPLDDDSDLEY+LEAFP +S+EAS EA ACVKVLIAS LP
Sbjct: 66  MLWRHLAYGHALLEKLEDGAQPLDDDSDLEYDLEAFPSISTEASAEATACVKVLIASSLP 125

Query: 127 SDSSLPNSSMVEAPLTINIPNGQSLRASTENSQPSSLMQGMNITVPVAVQKVPLPAPTPE 186
           SDSSLPNSSMVEAPLTINIP GQS RA +E S+ S  MQG NIT+PV+VQK        E
Sbjct: 126 SDSSLPNSSMVEAPLTINIPCGQSSRAPSEYSRLSGSMQGTNITIPVSVQK-------SE 178

Query: 187 VLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQ 246
             DANG   GS+P RKKRKPW+++ED ELI+AVQKCGEGNWANIL+GDFK DR+ASQLSQ
Sbjct: 179 GFDANGSTSGSLPARKKRKPWSSDEDKELIAAVQKCGEGNWANILKGDFKGDRSASQLSQ 238

Query: 247 RWNILRKKHGNV-ILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSS 305
           RW I+RKKH N+ + G+NS+GSQLSEAQLAARHAMSLALDMPVKN+T S  ++ AGT  +
Sbjct: 239 RWTIIRKKHKNLNVGGANSNGSQLSEAQLAARHAMSLALDMPVKNLTTS--SSIAGTNPN 296

Query: 306 ATMNN---------PVPSTAN-AEASSVANQ---SKLSPVGSPGSAVKSRVPLKKMPAKS 352
           AT +N          +P++ N ++A  ++ Q   S LS +GS GSA KSR   KK  AKS
Sbjct: 297 ATSSNSAFPATPAEALPASTNISQAQQLSQQGPVSTLSQMGSLGSAPKSRATSKKTSAKS 356

Query: 353 NFGADSSIRAAAVAAGARIVTPSDAASLLKVAQAKKAIHIMPSGVSSIKSPSAGSA---- 408
            F + S ++A AVAAGARI TPS AASLLK AQ++ A+HIMP G + IKS  AG A    
Sbjct: 357 TFSSQSMLKATAVAAGARIATPSAAASLLKDAQSRNAVHIMPGGSTLIKSSVAGGANPLP 416

Query: 409 SAHLEASPTTRYVRPSLPAVPSSSSPAVTSSASHPGLVKAALPKVQH---------NTSC 459
           + HL A P   Y     P    S+  AV  S S  G  K A P  Q          N S 
Sbjct: 417 ANHLGAHPNVHYKCAGPPTTSLSTYSAVAPSVSRTGSAKPAAPGGQLAPSPSATSVNISS 476

Query: 460 EQTNAVVSVPATELQLKPEVKAGEEIKVSGCSVSGNEPSKEIQLDLPKLDAEFKNQAAVA 519
           EQTNA  +  A E   K E K  EE KV    +SGN P  ++  D   + +   ++  V 
Sbjct: 477 EQTNAATTSLAVEYPAKQETKTSEETKV---PISGNVPKAKVLEDQACVSSNTASE-QVQ 532

Query: 520 ENPDSSSNMEIV-ENG-----------QVQSNGNQPEGNGNQNGNDDKMVDSPVANGENQ 567
           E+  + SN E+V EN            + ++  N  E   +QN ND+K++D  VA     
Sbjct: 533 EDQATLSNTEVVLENKKAMVSDTKCLLKTETAENDGEVAESQNVNDNKIMDFRVAGECEN 592

Query: 568 AAVKQKNSGLPQSSNNEEAELPTLVIDKCSSKNLEV 603
            +V  +NSG  Q++N ++ +LP    D C  K+ EV
Sbjct: 593 QSVANENSG-NQNANEKQTDLPNTATD-CGEKSDEV 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492495|ref|XP_002283801.2| PREDICTED: uncharacterized protein LOC100245507 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545976|ref|XP_002514048.1| DNA binding protein, putative [Ricinus communis] gi|223547134|gb|EEF48631.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224067082|ref|XP_002302346.1| predicted protein [Populus trichocarpa] gi|222844072|gb|EEE81619.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147772117|emb|CAN60243.1| hypothetical protein VITISV_010188 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470068|ref|XP_004152740.1| PREDICTED: uncharacterized protein LOC101206820 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511444|ref|XP_004163958.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223883 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518433|ref|XP_003527883.1| PREDICTED: uncharacterized protein LOC100799956 [Glycine max] Back     alignment and taxonomy information
>gi|449437282|ref|XP_004136421.1| PREDICTED: uncharacterized protein LOC101205013 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449529210|ref|XP_004171594.1| PREDICTED: uncharacterized protein LOC101223915 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query603
TAIR|locus:2015307 834 AT1G58220 [Arabidopsis thalian 0.628 0.454 0.387 3.5e-59
ZFIN|ZDB-GENE-090612-2386 terf1 "telomeric repeat bindin 0.207 0.323 0.323 1.5e-07
UNIPROTKB|F1NCJ0345 TERF1 "Uncharacterized protein 0.096 0.168 0.466 5.4e-06
UNIPROTKB|F1NEJ5354 TERF1 "Uncharacterized protein 0.096 0.163 0.466 5.7e-06
UNIPROTKB|F1NCI9366 TERF1 "Uncharacterized protein 0.096 0.158 0.466 6.1e-06
RGD|1311574421 Terf1 "telomeric repeat bindin 0.086 0.123 0.444 0.00076
TAIR|locus:2015307 AT1G58220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 153/395 (38%), Positives = 211/395 (53%)

Query:     1 MVENTNKKQKKGSISEGDVSSLLQRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGIS 60
             MV+N+N K++K  ISE D+++LLQRY   T+L LLQE+A + + K++WN LVKKTSTGI+
Sbjct:     1 MVDNSNNKKRKEFISEADIATLLQRYDTVTILKLLQEMAYYAEAKMNWNELVKKTSTGIT 60

Query:    61 NAREYQMLWRHLAYRNTLFDKLEDNAQPXXXXXXXXXXXXAFPXXXXXXXXXXXXCVKVL 120
             +AREYQ+LWRHLAYR++L   + +NA+             A P             VKV+
Sbjct:    61 SAREYQLLWRHLAYRDSLVP-VGNNARVLDDDSDMECELEASPGVSVDVVTEAVAHVKVM 119

Query:   121 IASGLPSDSSLPNSSMVEAPLTINIPNGQSL-RASTENSQPSSLMQGMNITVPVAVQKVP 179
              AS +PS+S +P  S VEAPLTINIP   SL R   E S      +GMNIT PV + K  
Sbjct:   120 AASYVPSESDIPEDSTVEAPLTINIP--YSLHRGPQEPSDSYWSSRGMNITFPVFLPKAA 177

Query:   180 LPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDR 239
                   E  + NGL   S+ PRK+RK W+AEED ELI+AV++ GEG+WA I + +F+ +R
Sbjct:   178 ------EGHNGNGL-ASSLAPRKRRKKWSAEEDEELIAAVKRHGEGSWALISKEEFEGER 230

Query:   240 TASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALD--MPVKNIXXXXXX 297
             TASQLSQRW  +R++  +    S  +G Q +EAQ+AA  A+SLA+   +P K +      
Sbjct:   231 TASQLSQRWGAIRRRT-DTSNTSTQTGLQRTEAQMAANRALSLAVGNRLPSKKLAVGMTP 289

Query:   298 XXXXXXXXXXXXXPVPS--TANAEASSVANQSKLSPVGSPGSAVKSRVPLKKMPAKSNFX 355
                             S  T   +         LS   +     KSRVP+KK    S   
Sbjct:   290 MLSSGTIKGAQANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSR 349

Query:   356 XXXXXXXXXXXXXXXXXTPSDAASLLKVAQAKKAI 390
                                + A ++ K+   K A+
Sbjct:   350 ADLMVTANSVAAAACMSGLATAVTVPKIEPGKNAV 384
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
ZFIN|ZDB-GENE-090612-2 terf1 "telomeric repeat binding factor (NIMA-interacting) 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCJ0 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEJ5 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCI9 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1311574 Terf1 "telomeric repeat binding factor (NIMA-interacting) 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015098001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (623 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 9e-14
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-11
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 8e-10
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 9e-09
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 4e-05
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information 
 Score = 65.3 bits (160), Expect = 9e-14
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 205 KPWTAEEDLELISAVQKCGEGNWANIL-RGDFKWDRTASQLSQRWNILRK 253
           + WT EED  L+  V+K G GNWA IL    F  +RT+  L  +W  L+K
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 603
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.96
PLN03212249 Transcription repressor MYB5; Provisional 99.95
PLN03091459 hypothetical protein; Provisional 99.94
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.54
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.44
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.39
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.33
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.27
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.17
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.0
KOG0051607 consensus RNA polymerase I termination factor, Myb 98.89
PLN03091459 hypothetical protein; Provisional 98.88
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.86
PLN03212249 Transcription repressor MYB5; Provisional 98.8
KOG0048238 consensus Transcription factor, Myb superfamily [T 98.5
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.49
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.39
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.25
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.15
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.05
COG5147512 REB1 Myb superfamily proteins, including transcrip 97.83
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 97.34
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.07
KOG0051607 consensus RNA polymerase I termination factor, Myb 96.76
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.18
KOG1279506 consensus Chromatin remodeling factor subunit and 96.08
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 95.62
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 95.49
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.32
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 95.15
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 94.9
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 92.57
KOG4282345 consensus Transcription factor GT-2 and related pr 91.73
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 89.73
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 89.53
PRK13923170 putative spore coat protein regulator protein YlbO 88.42
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 86.75
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 84.38
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 83.88
PLN03162526 golden-2 like transcription factor; Provisional 83.54
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 83.43
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 82.76
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=99.96  E-value=1.8e-30  Score=258.27  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=100.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc-ccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHH
Q 007452          202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAM  280 (603)
Q Consensus       202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p-gRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav  280 (603)
                      +.||+||+|||++|+++|++||.++|..|++.  ++ +|++++||.||.|      ||+|+ |+++.||+|||++|++++
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~--~gl~R~GKSCRlRW~N------yLrP~-ikrg~fT~eEe~~Ii~lH   77 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKL--AGLRRCGKSCRLRWTN------YLRPD-LKRGNFSDEEEDLIIKLH   77 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhh--cCCCccchHHHHHhhc------ccCCC-ccCCCCCHHHHHHHHHHH
Confidence            45799999999999999999999999999997  66 9999999999999      99999 999999999999999999


Q ss_pred             HhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCCcC
Q 007452          281 SLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS  321 (603)
Q Consensus       281 ~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkeas  321 (603)
                      .+   +|++  |+.||++|||||||. |||+|+++++|...
T Consensus        78 ~~---~GNr--Ws~IA~~LPGRTDNe-IKN~Wnt~lkkkl~  112 (238)
T KOG0048|consen   78 AL---LGNR--WSLIAGRLPGRTDNE-VKNHWNTHLKKKLL  112 (238)
T ss_pred             HH---HCcH--HHHHHhhCCCcCHHH-HHHHHHHHHHHHHH
Confidence            99   9999  999999999999999 99999999988754

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PLN03162 golden-2 like transcription factor; Provisional Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
1ba5_A53 Dna-Binding Domain Of Human Telomeric Protein, Htrf 1e-05
1w0t_A53 Htrf1 Dna-Binding Domain In Complex With Telomeric 3e-05
1iv6_A70 Solution Structure Of The Dna Complex Of Human Trf1 4e-05
1ity_A69 Solution Structure Of The Dna Binding Domain Of Hum 4e-05
3sjm_A64 Crystal Structure Analysis Of Trf2-Dbd-Dna Complex 5e-04
1w0u_A55 Htrf2 Dna-Binding Domain In Complex With Telomeric 6e-04
1xg1_A67 Solution Structure Of Myb-Domain Of Human Trf2 Leng 7e-04
1vf9_A64 Solution Structure Of Human Trf2 Length = 64 8e-04
1vfc_A63 Solution Structure Of The Dna Complex Of Human Trf2 8e-04
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1, Nmr, 18 Structures Length = 53 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRK 253
           +KR+ W  EED  L S V+K GEGNW+ IL   +K+ +RT+  L  RW  ++K
Sbjct: 1   RKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 52
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna. Length = 53 Back     alignment and structure
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1 Length = 70 Back     alignment and structure
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human Trf1 Length = 69 Back     alignment and structure
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex Length = 64 Back     alignment and structure
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna. Length = 55 Back     alignment and structure
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2 Length = 67 Back     alignment and structure
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2 Length = 64 Back     alignment and structure
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2 Length = 63 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 1e-19
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 4e-19
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 7e-19
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 1e-18
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 1e-14
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 2e-13
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 6e-13
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-11
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 7e-11
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-10
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 6e-09
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-07
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 3e-10
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 3e-10
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 4e-10
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 1e-07
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 2e-07
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 3e-07
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 2e-06
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 5e-05
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 6e-06
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 9e-04
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 7e-06
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 1e-05
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 2e-05
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-05
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 2e-04
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 3e-04
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 4e-04
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
 Score = 82.1 bits (203), Expect = 1e-19
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253
           S     K++ WT EE   + + VQK GEGNWA I +     +RTA  +  RW  +++
Sbjct: 4   STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 62 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query603
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.95
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.95
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.95
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.95
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.95
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.93
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.9
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.79
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.71
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.68
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.63
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.61
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.61
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.61
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.6
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.58
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.58
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.56
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.55
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.53
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.49
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.45
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.42
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.39
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.39
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.38
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.34
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.28
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.26
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.26
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.23
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.21
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.18
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.18
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.17
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.17
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.78
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.15
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.75
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.13
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.12
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.06
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.0
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 98.93
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.93
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.92
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.9
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.88
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 98.84
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.84
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.75
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.65
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.62
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.57
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.47
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.45
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.45
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.43
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.38
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.36
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.2
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.16
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.09
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.09
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.82
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.68
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 97.66
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.58
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.57
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.57
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.56
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.48
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 97.42
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.26
2crg_A70 Metastasis associated protein MTA3; transcription 97.12
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.96
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.95
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.95
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.9
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.46
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 96.29
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 96.24
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.05
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 96.0
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 95.74
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.53
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 95.38
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 93.74
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 93.35
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 93.32
2crg_A70 Metastasis associated protein MTA3; transcription 92.47
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 92.27
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 91.18
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 88.97
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=99.95  E-value=2.1e-29  Score=219.34  Aligned_cols=103  Identities=26%  Similarity=0.317  Sum_probs=97.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 007452          202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS  281 (603)
Q Consensus       202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~  281 (603)
                      .++++||+|||++|+++|++||.++|..||..  +++|+++||++||.+      +|+|. +++++||.|||++|++++.
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~~~   72 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRIIYQAHK   72 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH------TTCCC-CCCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh--hcCCCHHHHHHHHHh------ccCCc-ccccCCCHHHHHHHHHHHH
Confidence            47899999999999999999998899999987  899999999999999      99999 9999999999999999999


Q ss_pred             hhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452          282 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE  319 (603)
Q Consensus       282 ~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke  319 (603)
                      .   ||++  |+.||.+|||||+++ |||||+.++++.
T Consensus        73 ~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~~~~~  104 (105)
T 1gv2_A           73 R---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK  104 (105)
T ss_dssp             H---HSSC--HHHHHTTCTTCCHHH-HHHHHHHHTC--
T ss_pred             H---hCCC--HHHHHHHcCCCCHHH-HHHHHHHHHhcc
Confidence            9   9999  999999999999999 999999988864
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 603
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 6e-16
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 8e-13
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 7e-11
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 2e-10
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-09
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 3e-09
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 3e-09
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 4e-08
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 8e-08
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 1e-06
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 1e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 3e-05
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-04
d1irza_64 a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th 0.001
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 0.002
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 6e-16
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253
           KR+ W  EED  L S V+K GEGNW+ IL      +RT+  L  RW  ++K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query603
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.65
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.65
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.61
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.58
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.57
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.52
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.43
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.37
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.31
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.28
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.19
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.17
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.16
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.05
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.98
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.95
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.79
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.75
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.7
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.62
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.59
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.55
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.46
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.45
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.4
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.24
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.23
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.12
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.66
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.66
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.54
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 96.17
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 95.64
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 95.53
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.0
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 91.94
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 87.46
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 86.72
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4e-17  Score=125.96  Aligned_cols=51  Identities=35%  Similarity=0.580  Sum_probs=49.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCC
Q 007452          203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG  261 (603)
Q Consensus       203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~  261 (603)
                      +|++||+|||++|+++|++||.++|..||+.  |++||+.||++||.+      +|+|+
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qc~~Rw~~------~L~P~   52 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE   52 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH------TTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH--HCCCCHHHHHHHHHh------hCCCC
Confidence            6899999999999999999999999999987  899999999999999      99995
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure