Citrus Sinensis ID: 007460

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600---

MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVERERDDNSDAAESPHHVKRHGCAAARRCSSRRKGSGYYRRCSASLPDVTAISGHAVDGEERRNGPLHVDGIPAGLPRLHTLPEGKSAGHASSTKRAGNLIRPTSPKSPVASAFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

ccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccEEcEEEcccEEccccccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccEEcccHHHHHHHccccccccccHHHHHHHHccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccHHHcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEHHHHHHHccccccEcccccEEEcccccccccccccccccccccHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccEEEEEEEccHHHHHHHHcccccccccccEEEEEEEcccc

MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVererddnsdaaesphhvkrhgcaaarrcssrrkgsgyyrrcsaslpdvtaisghavdgeerrngplhvdgipaglprlhtlpegksaghasstkragnlirptspkspvasafesvegsdeednmtdsskldttylltngnagpnlpdhmnVNAEAIAASSMIRshsvsgdlhgvqpdpiaadilrkepeqetfarlqitpkevpspdeMEAYVVLQECLEMRKRYLFREavapwekemisdpstpkpnpdpfyyapvgksdhhfemqdgvihvypnkdskeelypvadattffTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEflaqksaphrdfynvrkvdthvhhsacMNQKHLLRFIKSKlrkepdevvifrdgTYLTLKEVFESldltgydlnvdlldvhadkstfhrfdkfnlkynpcgqsrLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWikcnvcfpllsHLYMHVCAHVCAYLL

MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVERERDDNsdaaesphhvkrhgcaaarrcssrrkgsgyyrrcsaslpdvTAISGHAVDGEERRNGPLHVDGIPAGLPRLHTLPEGksaghasstkragnlirptspkspvASAFEsvegsdeednmtdssKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARlqitpkevpspdeMEAYVVLQECLEMRKRYLFREAVAPWEkemisdpstpkpnpDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSklrkepdevvifrdgtylTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

MDAYTLHlamaalvgasvvavsayymHRKTLTQLLEFAKSVERERDDNSDAAESPHHVKRHgcaaarrcssrrkgsgyyrrcSASLPDVTAISGHAVDGEERRNGPLHVDGIPAGLPRLHTLPEGKSAGHASSTKRAGNLIRPTSPKSPVASAFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

***YTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFA***************************************YYRRCS*****V******************************************************************************************************************************************************************EAYVVLQECLEMRKRYLFREAVAPWE****************FYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYL*

***YTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEF****************************************************************************************************************************************************************************************************TFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLF******************KPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKE******APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKS***************************************RRCSASLPDVTAISGHAVDGEERRNGPLHVDGIPAGLPRLHTLPE***********RAGNLIRPT*************************SKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

*DAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVE*****************************************ASLPDVTAISGHAVDGEERRNGPLHVDGIPAGLPRLHT***********************SPKSP******SVEGSDEEDNMTDSSKLDTTYLLTNGNAG****D********IAASS***SHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVA*WEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLLSHLYMHVCAHVCAYLL

iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		603	2.2.26 [Sep-21-2011]
O80452		839	AMP deaminase OS=Arabidop	yes	no	0.897	0.644	0.722	0.0
Q84NP7		815	Probable AMP deaminase OS	yes	no	0.719	0.532	0.759	0.0
Q54DD0		790	AMP deaminase OS=Dictyost	yes	no	0.530	0.405	0.514	2e-91
P50998		831	AMP deaminase OS=Schizosa	yes	no	0.504	0.365	0.5	3e-82
P15274		810	AMP deaminase OS=Saccharo	yes	no	0.447	0.333	0.541	1e-79
Q02356		824	AMP deaminase 2 OS=Rattus	yes	no	0.489	0.358	0.477	5e-78
Q9DBT5		798	AMP deaminase 2 OS=Mus mu	yes	no	0.489	0.369	0.474	1e-77
Q01433		879	AMP deaminase 2 OS=Homo s	yes	no	0.489	0.335	0.471	8e-77
Q01432		767	AMP deaminase 3 OS=Homo s	no	no	0.469	0.368	0.493	9e-73
O08739		766	AMP deaminase 3 OS=Mus mu	no	no	0.441	0.347	0.505	2e-71

>sp\|O80452\|AMPD_ARATH AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2	Back alignment and function desciption

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/559 (72%), Positives = 457/559 (81%), Gaps = 18/559 (3%)

Query: 1   MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVERERDDNSDAAESPHHVKR 60
           M+     LA+AAL GAS VAVS ++MH K L  +LE  K  ER+ + + D  ++P  V+R
Sbjct: 1   MEPNIYQLALAALFGASFVAVSGFFMHFKALNLVLERGK--ERKENPDGDEPQNPTLVRR 58

Query: 61  HGCAAARRCSSRRKGSGYYRRCSASLPDVTAISGHAVDGEE---RRNGPLHVDGIPAGLP 117
                  R   RRK +  Y R  ASLPD T  +     G     R NG ++VD IP GLP
Sbjct: 59  -------RSQVRRKVNDQYGRSPASLPDATPFTDGGGGGGGDTGRSNGHVYVDEIPPGLP 111

Query: 118 RLHTLPEGKSAGH-ASSTKRAGNLIRPTSPKSPVASA--FESVEGSDEEDNMTDSSKLDT 174
           RLHT  EG+++ H ASS ++ G+ +RP SPKSPVASA  FESVE SD++DN+T+S  LD 
Sbjct: 112 RLHTPSEGRASVHGASSIRKTGSFVRPISPKSPVASASAFESVEESDDDDNLTNSEGLDA 171

Query: 175 TYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET 234
           +YL  NG+    +P   N    ++AASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET
Sbjct: 172 SYLQANGDN--EMPADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET 229

Query: 235 FARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPF 294
           F RL + P EVP+ DE+EAY  LQECLE+RKRY+F+E VAPWEKE+ISDPSTPKPN +PF
Sbjct: 230 FVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPF 288

Query: 295 YYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLC 354
            + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFTDLHH+L+VIA GN+RTLC
Sbjct: 289 AHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLC 348

Query: 355 HHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIK 414
           H RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIK
Sbjct: 349 HRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIK 408

Query: 415 SKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN 474
           SKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN
Sbjct: 409 SKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN 468

Query: 475 PCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLA 534
           PCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMAEYRISIYGRK SEWDQLA
Sbjct: 469 PCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLA 528

Query: 535 SWIVNNELYSENVVWLIQV 553
           SWIVNN+LYSENVVWLIQ+
Sbjct: 529 SWIVNNDLYSENVVWLIQL 547

AMP deaminase plays a critical role in energy metabolism. Essential for the transition from zygote to embryo.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 6

>sp\|Q84NP7\|AMPD_ORYSJ Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1	Back alignment and function description

>sp\|Q54DD0\|AMPD_DICDI AMP deaminase OS=Dictyostelium discoideum GN=amdA PE=1 SV=1	Back alignment and function description

>sp\|P50998\|AMPD_SCHPO AMP deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada1 PE=1 SV=3	Back alignment and function description

>sp\|P15274\|AMPD_YEAST AMP deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AMD1 PE=1 SV=2	Back alignment and function description

>sp\|Q02356\|AMPD2_RAT AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2 SV=2	Back alignment and function description

>sp\|Q9DBT5\|AMPD2_MOUSE AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1	Back alignment and function description

>sp\|Q01433\|AMPD2_HUMAN AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2	Back alignment and function description

>sp\|Q01432\|AMPD3_HUMAN AMP deaminase 3 OS=Homo sapiens GN=AMPD3 PE=1 SV=1	Back alignment and function description

>sp\|O08739\|AMPD3_MOUSE AMP deaminase 3 OS=Mus musculus GN=Ampd3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		603
449461767		845	PREDICTED: AMP deaminase-like [Cucumis s	0.950	0.678	0.775	0.0
224091022		876	predicted protein [Populus trichocarpa]	0.958	0.659	0.753	0.0
296083176		860	unnamed protein product [Vitis vinifera]	0.915	0.641	0.797	0.0
356503248		838	PREDICTED: AMP deaminase-like [Glycine m	0.953	0.686	0.767	0.0
356496203		848	PREDICTED: AMP deaminase-like [Glycine m	0.956	0.680	0.757	0.0
255582650		821	AMP deaminase, putative [Ricinus communi	0.913	0.671	0.771	0.0
224140451		797	predicted protein [Populus trichocarpa]	0.887	0.671	0.757	0.0
357468881		621	AMP deaminase [Medicago truncatula] gi\|3	0.882	0.856	0.789	0.0
357468879		835	AMP deaminase [Medicago truncatula] gi\|3	0.882	0.637	0.789	0.0
359481163		828	PREDICTED: AMP deaminase [Vitis vinifera	0.873	0.636	0.768	0.0

>gi\|449461767\|ref\|XP_004148613.1\| PREDICTED: AMP deaminase-like [Cucumis sativus] gi\|449525295\|ref\|XP_004169653.1\| PREDICTED: AMP deaminase-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/616 (77%), Positives = 519/616 (84%), Gaps = 43/616 (6%)

Query: 1   MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVER--ERDDNSDAAESPHHV 58
           MDAY LH+A+AAL+GASVVAVSAYYMHRKTLTQLLEFAK+VER  ERDDN+  AESP H 
Sbjct: 1   MDAYPLHMAVAALIGASVVAVSAYYMHRKTLTQLLEFAKTVERDRERDDNNFDAESPRHS 60

Query: 59  KRHGCAAARRCSSRRKGSGYYRRCSASLPDVTAISGHAVDGEERRNGPLHVDGIPAGLPR 118
           K+      R    RRKG+GY RR SASLPDVTAISG A DG+++RNG + +D IPAGLPR
Sbjct: 61  KKQ-----RGNYVRRKGTGYNRRASASLPDVTAISGGA-DGDDKRNGQVLLDVIPAGLPR 114

Query: 119 LHTLPEGKSAGHASSTKRAGNLIRPTSPKSPVAS--AFESVEGSDEED-NMTDSSKLDTT 175
           LHTLPEGK+     STKR+   +RPTSPKSP+AS  AFESVEGSD+ED NMT+ +KL + 
Sbjct: 115 LHTLPEGKN-----STKRS---MRPTSPKSPIASTSAFESVEGSDDEDDNMTEDTKLGSG 166

Query: 176 YLLTNGNAGP-------NLPDHMNVNAE--AIAASSMIRSHSVSGDLHGVQPDPIAADIL 226
           YLL NGNAGP       NLPDH+N N E  A+AASSMIRSHS+SGDLHGVQPDPIAADIL
Sbjct: 167 YLLANGNAGPECKGIFENLPDHINANGEQIALAASSMIRSHSISGDLHGVQPDPIAADIL 226

Query: 227 RKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPST 286
           RKEPEQETF RL ITP EVP PDE+E+Y+VLQECLEMRKRY+F EAVAPWEKE+ISDPST
Sbjct: 227 RKEPEQETFVRLNITPSEVPLPDEVESYLVLQECLEMRKRYVFSEAVAPWEKEIISDPST 286

Query: 287 PKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIA 346
           PKPNPDPF Y   GKSDH+FEMQDGVIHVY +KDSKEEL+PVADATTFFTDLHHILRV A
Sbjct: 287 PKPNPDPFQYTSEGKSDHYFEMQDGVIHVYADKDSKEELFPVADATTFFTDLHHILRVTA 346

Query: 347 LGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQ 406
            GN+RTLCH RL LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQ
Sbjct: 347 AGNIRTLCHRRLNLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQ 406

Query: 407 KHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRF 466
           KHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDL+GYDLNVDLLDVHADKSTFHRF
Sbjct: 407 KHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLSGYDLNVDLLDVHADKSTFHRF 466

Query: 467 DKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRK 526
           DKFNLKYNPCGQSRLREIFLKQDNLIQGRFL ELTKQVFSDL ASKYQMAEYRISIYGRK
Sbjct: 467 DKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGELTKQVFSDLAASKYQMAEYRISIYGRK 526

Query: 527 QSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCY-EMLVMQNFSFWIKCNVCFP 585
           QSEWDQLASWI+NN+LYSENVVWLIQ      L   +  Y EM ++ +F   I  N+  P
Sbjct: 527 QSEWDQLASWIINNDLYSENVVWLIQ------LPRLYNVYKEMGIVTSFQN-ILDNIFLP 579

Query: 586 LL-------SHLYMHV 594
           L        SH  +HV
Sbjct: 580 LFEATVDPDSHPQLHV 595

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224091022\|ref\|XP_002309149.1\| predicted protein [Populus trichocarpa] gi\|222855125\|gb\|EEE92672.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296083176\|emb\|CBI22812.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356503248\|ref\|XP_003520423.1\| PREDICTED: AMP deaminase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356496203\|ref\|XP_003516959.1\| PREDICTED: AMP deaminase-like [Glycine max]	Back alignment and taxonomy information

>gi\|255582650\|ref\|XP_002532104.1\| AMP deaminase, putative [Ricinus communis] gi\|223528207\|gb\|EEF30266.1\| AMP deaminase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224140451\|ref\|XP_002323596.1\| predicted protein [Populus trichocarpa] gi\|222868226\|gb\|EEF05357.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357468881\|ref\|XP_003604725.1\| AMP deaminase [Medicago truncatula] gi\|355505780\|gb\|AES86922.1\| AMP deaminase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357468879\|ref\|XP_003604724.1\| AMP deaminase [Medicago truncatula] gi\|355505779\|gb\|AES86921.1\| AMP deaminase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|359481163\|ref\|XP_002263306.2\| PREDICTED: AMP deaminase [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		603
TAIR\|locus:2042902		839	FAC1 "EMBRYONIC FACTOR1" [Arab	0.854	0.613	0.722	1.5e-200
DICTYBASE\|DDB_G0292266		790	amdA "AMP deaminase" [Dictyost	0.532	0.406	0.520	6.9e-86
CGD\|CAL0002924		778	orf19.891 [Candida albicans (t	0.422	0.327	0.560	8.3e-83
POMBASE\|SPBC106.04		831	ada1 "adenosine deaminase Ada1	0.504	0.365	0.512	2.7e-77
SGD\|S000004498		810	AMD1 "AMP deaminase" [Saccharo	0.447	0.333	0.541	1.7e-75
ZFIN\|ZDB-GENE-070713-5		793	ampd2 "adenosine monophosphate	0.409	0.311	0.548	3.1e-74
ZFIN\|ZDB-GENE-030131-5929		779	ampd3b "adenosine monophosphat	0.457	0.354	0.510	5.9e-74
ZFIN\|ZDB-GENE-091204-4		796	si:ch211-103a14.2 "si:ch211-10	0.462	0.350	0.494	8.4e-74
FB\|FBgn0052626		774	CG32626 [Drosophila melanogast	0.417	0.325	0.517	2.8e-73
RGD\|2110		824	Ampd2 "adenosine monophosphate	0.407	0.298	0.548	4.6e-73

TAIR\|locus:2042902 FAC1 "EMBRYONIC FACTOR1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1941 (688.3 bits), Expect = 1.5e-200, P = 1.5e-200
 Identities = 385/533 (72%), Positives = 434/533 (81%)

Query:    27 HRKTLTQLLEFAKSVERERDDNSDAAESPHHVKRHXXXXXXXXXXXXXXXXXXXXXSASL 86
             H K L  +LE  K  ER+ + + D  ++P  V+R                       ASL
Sbjct:    27 HFKALNLVLERGK--ERKENPDGDEPQNPTLVRRRSQVRRKVNDQYGRS-------PASL 77

Query:    87 PDVTAIS--GHAVDGEE-RRNGPLHVDGIPAGLPRLHTLPEGKSAGH-ASSTKRAGNLIR 142
             PD T  +  G    G+  R NG ++VD IP GLPRLHT  EG+++ H ASS ++ G+ +R
Sbjct:    78 PDATPFTDGGGGGGGDTGRSNGHVYVDEIPPGLPRLHTPSEGRASVHGASSIRKTGSFVR 137

Query:   143 PTSPKSPVASA--FESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAA 200
             P SPKSPVASA  FESVE SD++DN+T+S  LD +YL  NG+    +P   N    ++AA
Sbjct:   138 PISPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDN--EMPADANEEQISMAA 195

Query:   201 SSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQEC 260
             SSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY  LQEC
Sbjct:   196 SSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQEC 254

Query:   261 LEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKD 320
             LE+RKRY+F+E VAPWEKE+ISDPSTPKPN +PF + P GKSDH FEMQDGV+HV+ NKD
Sbjct:   255 LELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKD 314

Query:   321 SKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQ 380
             +KE+L+PVADAT FFTDLHH+L+VIA GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQ
Sbjct:   315 AKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQ 374

Query:   381 KSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFE 440
             KSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFE
Sbjct:   375 KSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFE 434

Query:   441 SLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEL 500
             SLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+
Sbjct:   435 SLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEI 494

Query:   501 TKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQV 553
             TKQVFSDLEASKYQMAEYRISIYGRK SEWDQLASWIVNN+LYSENVVWLIQ+
Sbjct:   495 TKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQL 547

GO:0003876 "AMP deaminase activity" evidence=IEA;IGI;ISS

GO:0006188 "IMP biosynthetic process" evidence=IEA

GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" evidence=IEA;ISS

GO:0019239 "deaminase activity" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

DICTYBASE\|DDB_G0292266 amdA "AMP deaminase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

CGD\|CAL0002924 orf19.891 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

POMBASE\|SPBC106.04 ada1 "adenosine deaminase Ada1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

SGD\|S000004498 AMD1 "AMP deaminase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070713-5 ampd2 "adenosine monophosphate deaminase 2 (isoform L)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5929 ampd3b "adenosine monophosphate deaminase 3b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-091204-4 si:ch211-103a14.2 "si:ch211-103a14.2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0052626 CG32626 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

RGD\|2110 Ampd2 "adenosine monophosphate deaminase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80452	AMPD_ARATH	3, ., 5, ., 4, ., 6	0.7227	0.8971	0.6448	yes	no
Q84NP7	AMPD_ORYSJ	3, ., 5, ., 4, ., 6	0.7590	0.7197	0.5325	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4	0.921
3rd Layer	3.5.4.6	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00060887	AMP deaminase (EC-3.5.4.6) (876 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)	•	•	0.925
	grail3.0022041801	SubName- Full=Putative uncharacterized protein; (342 aa)	•	•	0.909
	estExt_Genewise1_v1.C_LG_VIII1052	SubName- Full=Putative uncharacterized protein; (341 aa)	•	•	0.909
	estExt_fgenesh4_pg.C_LG_V1144	SubName- Full=Putative uncharacterized protein; (188 aa)	•	•	0.908
	estExt_fgenesh4_pg.C_1270057	adenine phosphoribosyltransferase (EC-2.4.2.7) (183 aa)	•	•	0.905
	estExt_fgenesh4_pg.C_LG_VI1808	adenine phosphoribosyltransferase (EC-2.4.2.7) (192 aa)	•		0.902
	grail3.0007027201	adenine phosphoribosyltransferase (EC-2.4.2.7) (192 aa)	•		0.901
	gw1.XVIII.3392.1	nucleotide kinase (EC-2.7.4.3) (500 aa)	•		0.899
	gw1.X.2474.1	adenylate kinase family protein (EC-2.7.4.3) (240 aa)	•		0.899
	gw1.X.1884.1	adenylosuccinate lyase (EC-4.3.2.2) (472 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		603
PLN02768		835	PLN02768, PLN02768, AMP deaminase	0.0
PLN03055		602	PLN03055, PLN03055, AMP deaminase; Provisional	0.0
cd01319		496	cd01319, AMPD, AMP deaminase (AMPD) catalyzes the	1e-140
TIGR01429		611	TIGR01429, AMP_deaminase, AMP deaminase	1e-126
PTZ00310		1453	PTZ00310, PTZ00310, AMP deaminase; Provisional	1e-51
PTZ00310		1453	PTZ00310, PTZ00310, AMP deaminase; Provisional	8e-19
pfam00962		328	pfam00962, A_deaminase, Adenosine/AMP deaminase	1e-18
COG1816		345	COG1816, Add, Adenosine deaminase [Nucleotide tran	5e-13
cd00443		305	cd00443, ADA_AMPD, Adenosine/AMP deaminase	2e-05

>gnl\|CDD\|215411 PLN02768, PLN02768, AMP deaminase	Back alignment and domain information

 Score = 1026 bits (2655), Expect = 0.0
 Identities = 455/559 (81%), Positives = 485/559 (86%), Gaps = 22/559 (3%)

Query: 1   MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVERERDDNSDAAESPHHVKR 60
           M+ Y LHLA+AALVGAS VAVSAYYMHRKTL QLLEFAK+++R R+ +     +      
Sbjct: 1   MEPYALHLALAALVGASFVAVSAYYMHRKTLDQLLEFAKTLDRNREGDEPQNPTS----- 55

Query: 61  HGCAAARRCSSRRKGSGYYRRCSASLPDVTAISGHAVDGEERRNGP-LHVDGIPAGLPRL 119
                      RRKG+ YYRR SASLPD TA SG   DG+E R+G  ++VDGIP GLPRL
Sbjct: 56  ---------QVRRKGNDYYRRGSASLPDATAFSGGGDDGDEPRDGHHVYVDGIPPGLPRL 106

Query: 120 HTLPEGKS-AGHASSTKRAGNLIRPTSPKSPV--ASAFESVEGSDEEDNMTDSSKLDTTY 176
           HT PEGK+    A STKR G+ IRPTSPKSPV  ASAFESVEGSD+EDN+TD+ KLDTTY
Sbjct: 107 HTGPEGKASVHGAGSTKRVGSFIRPTSPKSPVASASAFESVEGSDDEDNLTDNEKLDTTY 166

Query: 177 LLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET 234
           L TNGN     PDH + N E   I ASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET
Sbjct: 167 LHTNGNVEL--PDHADANGEQIPIPASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET 224

Query: 235 FARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPF 294
           F RL ITP EVPSPDE+EAY VLQECLE+RKRY+FRE VAPWEKE+ISDPSTPKPNP+PF
Sbjct: 225 FVRLNITPLEVPSPDEVEAYKVLQECLELRKRYVFREEVAPWEKEIISDPSTPKPNPNPF 284

Query: 295 YYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLC 354
            Y P GKSDH+FEMQDGV+HVY NKDSKEEL+PVADATTFFTDLHHILRVIA GN+RTLC
Sbjct: 285 SYTPEGKSDHYFEMQDGVVHVYANKDSKEELFPVADATTFFTDLHHILRVIAAGNIRTLC 344

Query: 355 HHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIK 414
           HHRL LLEQKFNLHLMLNAD+EFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIK
Sbjct: 345 HHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIK 404

Query: 415 SKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN 474
           SKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN
Sbjct: 405 SKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN 464

Query: 475 PCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLA 534
           PCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLA
Sbjct: 465 PCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLA 524

Query: 535 SWIVNNELYSENVVWLIQV 553
           SWIVNNELYSENVVWLIQ+
Sbjct: 525 SWIVNNELYSENVVWLIQL 543

Length = 835

>gnl\|CDD\|178613 PLN03055, PLN03055, AMP deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|238644 cd01319, AMPD, AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring	Back alignment and domain information

>gnl\|CDD\|233409 TIGR01429, AMP_deaminase, AMP deaminase	Back alignment and domain information

>gnl\|CDD\|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|216216 pfam00962, A_deaminase, Adenosine/AMP deaminase	Back alignment and domain information

>gnl\|CDD\|224729 COG1816, Add, Adenosine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		603
PLN02768		835	AMP deaminase	100.0
PLN03055		602	AMP deaminase; Provisional	100.0
KOG1096		768	consensus Adenosine monophosphate deaminase [Nucle	100.0
TIGR01429		611	AMP_deaminase AMP deaminase. This model describes	100.0
PTZ00310		1453	AMP deaminase; Provisional	100.0
cd01319		496	AMPD AMP deaminase (AMPD) catalyzes the hydrolytic	100.0
PTZ00310		1453	AMP deaminase; Provisional	100.0
COG1816		345	Add Adenosine deaminase [Nucleotide transport and	98.58
cd00443		305	ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin	98.19
PF00962		331	A_deaminase: Adenosine/AMP deaminase immunodeficie	96.73
cd01321		345	ADGF Adenosine deaminase-related growth factors (A	85.65

>PLN02768 AMP deaminase	Back alignment and domain information

Probab=100.00  E-value=7.7e-184  Score=1514.41  Aligned_cols=574  Identities=80%  Similarity=1.205  Sum_probs=540.6

Q ss_pred             CchhhHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCCCcCCCCccccccccchhccccccCCCCCccc
Q 007460            1 MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVERERDDNSDAAESPHHVKRHGCAAARRCSSRRKGSGYYR   80 (603)
Q Consensus         1 m~~~~l~lAmAALvGAS~~A~sa~y~H~rtv~qvl~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   80 (603)
                      |.+|+||||||||||||+|||||||||||||||||++|+|+||++...+.++.+              ++.+++|+++||
T Consensus         1 ~~~~~l~la~aalvgas~~a~~a~~~h~~~~~q~~~~~~~~~r~~~~~~~~~~~--------------~~~~~~~~~~~~   66 (835)
T PLN02768          1 MEPYALHLALAALVGASFVAVSAYYMHRKTLDQLLEFAKTLDRNREGDEPQNPT--------------SQVRRKGNDYYR   66 (835)
T ss_pred             CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccCCc--------------cccccCCccccc
Confidence            679999999999999999999999999999999999999999987555443322              345568999999


Q ss_pred             cccCCCCCceecccCCcCCcccC-CCCccccCCCCCCCCcccCCCC-CccccCCCccccccccCcCCCCC--cccccccc
Q 007460           81 RCSASLPDVTAISGHAVDGEERR-NGPLHVDGIPAGLPRLHTLPEG-KSAGHASSTKRAGNLIRPTSPKS--PVASAFES  156 (603)
Q Consensus        81 ~~s~slP~~~~~~~~~~~~~~~~-~~~~~~~~IP~GLP~L~t~~~g-~~~~~~~~~~~~~~~~r~~~p~s--~~~~~~~~  156 (603)
                      |||+||||++++++++.++...+ +.++++++||+|||||||+|+| |+.+++||++|+|+++|||||||  |+||||||
T Consensus        67 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ip~glp~l~t~~~~~~~~~~~~s~~r~~~~~r~~~p~s~~~~~~a~~~  146 (835)
T PLN02768         67 RGSASLPDATAFSGGGDDGDEPRDGHHVYVDGIPPGLPRLHTGPEGKASVHGAGSTKRVGSFIRPTSPKSPVASASAFES  146 (835)
T ss_pred             cccccCCCcccccCCCCCCCccccCcccccCCCCCCCCCCccCCCCCCcccCccccccccccccCCCCCCCCcccchhhh
Confidence            99999999999994443333333 4678999999999999999996 67899999999999999999999  55699999


Q ss_pred             ccCCccccccccCCCCcccccccCCCCCCCCCcccccchhH--hhhccccccccccCCCCCCCCCccchhhhhcCcccCC
Q 007460          157 VEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET  234 (603)
Q Consensus       157 ~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rs~s~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (603)
                      +||||||++++.+++.|++|+++||+.+.  ++++..||++  +++..||||+++.||||++||||.+++||+|+||+++
T Consensus       147 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (835)
T PLN02768        147 VEGSDDEDNLTDNEKLDTTYLHTNGNVEL--PDHADANGEQIPIPASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET  224 (835)
T ss_pred             ccCCccccccCCcccccchhhccCCCCCC--ccccccCcccccccchhceeccccCCccccCCCCchHHHHhhcCchhhh
Confidence            99999999999999999999999999885  7888899988  7889999999999999999999999999999999999


Q ss_pred             cceeeeCCCCCCChhHHHHHHHHHHHHHhhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeCcEEE
Q 007460          235 FARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIH  314 (603)
Q Consensus       235 f~Rv~I~~~~~p~~d~~~a~~~l~~aL~LR~kY~~~~~~~~~~~~~~~~~~~p~p~~~p~~~~~~~~~~~~f~~~dGV~~  314 (603)
                      ||||.|+|.|+|.+|++++++.|.+||.||+||||.....+|+.....++.+|+|.++||.+.++++++++|+|+||||+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ky~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~  304 (835)
T PLN02768        225 FVRLNITPLEVPSPDEVEAYKVLQECLELRKRYVFREEVAPWEKEIISDPSTPKPNPNPFSYTPEGKSDHYFEMQDGVVH  304 (835)
T ss_pred             hhccccccCCCccHHHHHHHHHHHHHHHHHHHHccCCCCCCccccccCCCCCCCCCCCCcccCCCCCCCeEEEecCCEEE
Confidence            99999999999999999999999999999999999888899988877788889999999999989999999999999999


Q ss_pred             EecCCCCCcccCCCCChHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceee
Q 007460          315 VYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKV  394 (603)
Q Consensus       315 v~~~~~~~~~~~pip~~~eF~~D~~~l~~~i~~gp~ksfc~rRL~~Le~KF~Lh~lLN~~~E~~e~K~vphRDFYNvrKV  394 (603)
                      ||++.+..+..+|+|||++|+.|++.|+++|++||++|||++||+|||+||+||++||+++|..++|++|||||||||||
T Consensus       305 v~~~~~~~~~~~p~~~~~~F~~D~~~l~~~i~dg~~ksfc~~RL~~Le~Kf~Lh~lLN~~~E~~~~K~~phrDFYnvrKV  384 (835)
T PLN02768        305 VYANKDSKEELFPVADATTFFTDLHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKV  384 (835)
T ss_pred             EeeCCCCCcccCCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhccCCCCCceeeeEe
Confidence            99888777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccCCCccccccccccCCC
Q 007460          395 DTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN  474 (603)
Q Consensus       395 DthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn~KyN  474 (603)
                      ||||||||||||||||+|||+|++++||+||+.++|+.+||+|||+++++++|+||||+|||||+++||||||+||+|||
T Consensus       385 Dthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDkFn~kyn  464 (835)
T PLN02768        385 DTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN  464 (835)
T ss_pred             eccchhhccCCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHhhcccCCCCchhHHHHHHHHHHHHhhhcccceeEEEEEEecCChhHHHHHHHHHHHCCCCCCCceEEEEec
Q 007460          475 PCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVW  554 (603)
Q Consensus       475 P~G~s~LReiFLktDN~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSIYGrs~~EW~kLA~Wv~~~~L~S~nnRWlIQIP  554 (603)
                      |+|+++||+|||||||+|+|||||||||+||+++|++|||+|||||||||++++||++||+|+++|||+|.||||+||||
T Consensus       465 P~G~s~LReiFLktDN~i~GrYfAELiK~V~~dlE~sKyQ~aE~RlsIYGr~~~EW~kLA~W~v~~~l~S~nvRWlIQIP  544 (835)
T PLN02768        465 PCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLP  544 (835)
T ss_pred             ccchHHHHHHHcCcCCCCChhhHHHHHHHHHHHHHhccceeeEEEEEecCCCHHHHHHHHHHHHHcCCCCCCceEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhccccccccccccccHHHHhhhccccccc-------cCchhhHHH
Q 007460          555 ISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCA  596 (603)
Q Consensus       555 Rly~~~~~~~~~~~g~~~nF~~~l~~NIF~PLf-------~~~~~~~~~  596 (603)
                      |+|.+     +++.|.|+||||||+ |||+|||       +||.||.|-
T Consensus       545 RlY~i-----~k~~g~v~nFqd~L~-NIF~PLFeATl~P~~hp~L~~FL  587 (835)
T PLN02768        545 RLYNV-----YKEMGIVTSFQNILD-NIFIPLFEVTVDPDSHPQLHVFL  587 (835)
T ss_pred             cchhh-----hhcCCccCCHHHHHH-HHHHHHHHHhcCCccCHHHHHHH
Confidence            99976     558899999999995 9999999       778888763

>PLN03055 AMP deaminase; Provisional	Back alignment and domain information

>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR01429 AMP_deaminase AMP deaminase	Back alignment and domain information

>PTZ00310 AMP deaminase; Provisional	Back alignment and domain information

>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring	Back alignment and domain information

>PTZ00310 AMP deaminase; Provisional	Back alignment and domain information

>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>cd00443 ADA_AMPD Adenosine/AMP deaminase	Back alignment and domain information

>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3	Back alignment and domain information

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		603
2a3l_A		701	X-Ray Structure Of Adenosine 5'-Monophosphate Deami		0.0

>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase From Arabidopsis Thaliana In Complex With Coformycin 5'-Phosphate Length = 701

Back alignment and structure

Iteration: 1

Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/411 (83%), Positives = 373/411 (90%), Gaps = 5/411 (1%) Query: 145 SPKSPVASA--FESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASS 202 SPKSPVASA FESVE SD++DN+T+S LD +YL NG+ +P N ++AASS Sbjct: 2 SPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDN--EMPADANEEQISMAASS 59 Query: 203 MIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLE 262 MIRSHSVSGDLHGVQPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY LQECLE Sbjct: 60 MIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLE 118 Query: 263 MRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSK 322 +RKRY+F+E VAPWEKE+ISDPSTPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+K Sbjct: 119 LRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAK 178 Query: 323 EELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKS 382 E+L+PVADAT FFTDLHH+L+VIA GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKS Sbjct: 179 EDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKS 238 Query: 383 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESL 442 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESL Sbjct: 239 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESL 298 Query: 443 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTK 502 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TK Sbjct: 299 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITK 358 Query: 503 QVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQV 553 QVFSDLEASKYQMAEYRISIYGRK SEWDQLASWIVNN+LYSENVVWLIQ+ Sbjct: 359 QVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQL 409

PyMOL of 2a3l

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		603
2a3l_A		701	AMP deaminase, AMPD; atampd, AT2G38280, adenosine	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 Length = 701	Back alignment and structure

 Score =  528 bits (1361), Expect = 0.0
 Identities = 347/445 (77%), Positives = 383/445 (86%), Gaps = 13/445 (2%)

Query: 145 SPKSPV--ASAFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASS 202
           SPKSPV  ASAFESVE SD++DN+T+S  LD +YL  NG+    +P   N    ++AASS
Sbjct: 2   SPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDN--EMPADANEEQISMAASS 59

Query: 203 MIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLE 262
           MIRSHSVSGDLHGVQPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY  LQECLE
Sbjct: 60  MIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLE 118

Query: 263 MRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSK 322
           +RKRY+F+E VAPWEKE+ISDPSTPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+K
Sbjct: 119 LRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAK 178

Query: 323 EELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKS 382
           E+L+PVADAT FFTDLHH+L+VIA GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKS
Sbjct: 179 EDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKS 238

Query: 383 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESL 442
           APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESL
Sbjct: 239 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESL 298

Query: 443 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTK 502
           DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TK
Sbjct: 299 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITK 358

Query: 503 QVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQV-WISMFLKS 561
           QVFSDLEASKYQMAEYRISIYGRK SEWDQLASWIVNN+LYSENVVWLIQ+  +    K 
Sbjct: 359 QVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKD 418

Query: 562 HHRCYEMLVMQNFSFWIKCNVCFPL 586
                    + +F   +  N+  PL
Sbjct: 419 MGI------VTSFQNILD-NIFIPL 436

PyMOL of 2a3l

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		603
2a3l_A		701	AMP deaminase, AMPD; atampd, AT2G38280, adenosine	100.0
2pgf_A		371	Adenosine deaminase; metallo-dependent hydrolase,	94.4

>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1	Back alignment and structure

Probab=100.00  E-value=1.8e-108  Score=915.47  Aligned_cols=443  Identities=79%  Similarity=1.212  Sum_probs=345.9

Q ss_pred             CCCCCcccc--ccccccCCccccccccCCCCcccccccCCCCCCCCCcccccchhH--hhhccccccccccCCCCCCCCC
Q 007460          144 TSPKSPVAS--AFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPD  219 (603)
Q Consensus       144 ~~p~s~~~~--~~~~~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rs~s~~~~~~~~~~~  219 (603)
                      |||||||++  ||+|+|+||||+++....+.|+.|+++||..+.    .+++|+++  .....|+||+|+++++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~   76 (701)
T 2a3l_A            1 MSPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDNEM----PADANEEQISMAASSMIRSHSVSGDLHGVQPD   76 (701)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             CCCCCCCccccccccccccccccccccccCCccccccccccccc----chhhccchhhHHHHhhhhccccccccccCCCC
Confidence            799999995  999999999999998888999999999999873    46777766  6667899999999999999999


Q ss_pred             ccchhhhhcCcccCCcceeeeCCCCCCChhHHHHHHHHHHHHHhhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCC
Q 007460          220 PIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPV  299 (603)
Q Consensus       220 ~~~~~~~~~~~~~~~f~Rv~I~~~~~p~~d~~~a~~~l~~aL~LR~kY~~~~~~~~~~~~~~~~~~~p~p~~~p~~~~~~  299 (603)
                      |++++|++++|++++||||.|++ ++|..|+++|++.|.+||.||+|||+.....+|+..+..++.+|.+.++||.+.++
T Consensus        77 ~~~~~il~~~~~~~~f~rv~i~~-~~~~~e~~~~~~~i~~al~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (701)
T 2a3l_A           77 PIAADILRKEPEQETFVRLNVPL-EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQ  155 (701)
T ss_dssp             TTTCCCCCCCCCSCCCCCCCCCC-CCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCCCCC
T ss_pred             ccccccccCCcccccceeEEcCC-CCCCHHHHHHHHHHHHHHhhHHHhcccccCCchhccccccCCCCCCCCCcccCCCC
Confidence            99999999999999999999955 56778999999999999999999999888888987777777788899999999888


Q ss_pred             CCCCceEEeeCcEEEEecCCCCCcccCCCCChHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhccchhhhh
Q 007460          300 GKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLA  379 (603)
Q Consensus       300 ~~~~~~f~~~dGV~~v~~~~~~~~~~~pip~~~eF~~D~~~l~~~i~~gp~ksfc~rRL~~Le~KF~Lh~lLN~~~E~~e  379 (603)
                      +++++.|+|+||||+||.+++..+..+|+|||++|+.|++.|+++|++||+||||++||+|||+||+||++||+.+|..+
T Consensus       156 ~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~Rl~~l~~kf~l~~~ln~~~E~~~  235 (701)
T 2a3l_A          156 GKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLA  235 (701)
T ss_dssp             CCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccceEEeeccEEEEecCCCcccccCCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence            88999999999999999877777889999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCcccceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccC
Q 007460          380 QKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHAD  459 (603)
Q Consensus       380 ~K~vphRDFYNvrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad  459 (603)
                      +|++|||||||++|||+|+|+||||+|++||+|||+|++.+|+++|+.++|+.+||+|+|+.++++.|+||||+|+||++
T Consensus       236 ~k~~~~~dFy~~~KVDlHvHLsg~m~~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~~ydltvd~L~~~ad  315 (701)
T 2a3l_A          236 QKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHAD  315 (701)
T ss_dssp             GGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCCSC
T ss_pred             hccCCCCccccCCccceeecccCCCCHHHHHHHHHhhccCCCCceEecCCCCcccHHHHHHHcCCccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccCCCCCchhHHHHhhcccCCCCchhHHHHHHHHHHHHhhhcccceeEEEEEEecCChhHHHHHHHHHHH
Q 007460          460 KSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVN  539 (603)
Q Consensus       460 ~~tFhRFD~Fn~KyNP~G~s~LReiFLktDN~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSIYGrs~~EW~kLA~Wv~~  539 (603)
                      +++|||||+||+||||+|+++||+|||||||+|.|+|||+|+++|++++++++||++|+|+++||++..+|+++++|+++
T Consensus       316 ~~~F~rFd~Fn~kynp~g~~~LreiFlktdn~i~~e~l~ri~~evled~a~dgV~Y~ElR~sp~~~~~~~~~~l~~~v~~  395 (701)
T 2a3l_A          316 KSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVN  395 (701)
T ss_dssp             SSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHHHHT
T ss_pred             cchhhhhcccccccChhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCeEEEEEeccccCCCCcHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEeccchhhccccccccccccccHHHHhhhccccccc-------cCchhhHHHH
Q 007460          540 NELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCAH  597 (603)
Q Consensus       540 ~~L~S~nnRWlIQIPRly~~~~~~~~~~~g~~~nF~~~l~~NIF~PLf-------~~~~~~~~~~  597 (603)
                      +++.+.++||+|||||.|..     ....+.+.+|+++|+ |||.|||       +||.++.+-+
T Consensus       396 ~~~~~~~vr~ii~i~R~~~~-----~~a~~~v~~F~~~l~-nIF~PL~e~t~~p~~~~~l~~~~~  454 (701)
T 2a3l_A          396 NDLYSENVVWLIQLPRLYNI-----YKDMGIVTSFQNILD-NIFIPLFEATVDPDSHPQLHVFLK  454 (701)
T ss_dssp             TTCCCSSEEEEEEEECCHHH-----HTTSSSCSSTHHHHH-HHSSHHHHHHHCGGGSTTTHHHHT
T ss_pred             cCccCcceEEEEEeecccCH-----HHhcChHHHHHHHHH-hhhhHHHHhhcCcccCHHHHhcCC
Confidence            99999999999999999965     336788999999995 9999999       5778877654

PyMOL of 2a3l

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		603
d2a3la1		628	c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalyti	1e-162

>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 628	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: AMP deaminase (AMPD), catalytic domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  475 bits (1223), Expect = e-162
 Identities = 296/337 (87%), Positives = 318/337 (94%), Gaps = 1/337 (0%)

Query: 217 QPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPW 276
           QPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY  LQECLE+RKRY+F+E VAPW
Sbjct: 1   QPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPW 59

Query: 277 EKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFT 336
           EKE+ISDPSTPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+KE+L+PVADAT FFT
Sbjct: 60  EKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFT 119

Query: 337 DLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT 396
           DLHH+L+VIA GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT
Sbjct: 120 DLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT 179

Query: 397 HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDV 456
           HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESLDLTGYDLNVDLLDV
Sbjct: 180 HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDV 239

Query: 457 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMA 516
           HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDLEASKYQMA
Sbjct: 240 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMA 299

Query: 517 EYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQV 553
           EYRISIYGRK SEWDQLASWIVNN+LYSENVVWLIQ+
Sbjct: 300 EYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQL 336

PyMOL of d2a3la1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		603
d2a3la1		628	AMP deaminase (AMPD), catalytic domain {Thale cres	100.0
d1a4ma_		349	Adenosine deaminase (ADA) {Mouse (Mus musculus) [T	96.6
d2amxa1		357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	89.12

>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: AMP deaminase (AMPD), catalytic domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-103  Score=864.08  Aligned_cols=377  Identities=81%  Similarity=1.259  Sum_probs=350.6

Q ss_pred             CCCccchhhhhcCcccCCcceeeeCCCCCCChhHHHHHHHHHHHHHhhhccCCCCCCCcccccccCCCCCCCCCCCCCcc
Q 007460          217 QPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYY  296 (603)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~f~Rv~I~~~~~p~~d~~~a~~~l~~aL~LR~kY~~~~~~~~~~~~~~~~~~~p~p~~~p~~~  296 (603)
                      ||+|+++++++++|+..+|+||.|+ .++|+.|+++|+++|.+||.||+|||+.++..+|..+...++.+|.+..+||..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~R~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (628)
T d2a3la1           1 QPDPIAADILRKEPEQETFVRLNVP-LEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAH   79 (628)
T ss_dssp             CCCTTTCCCCCCCCCSCCCCCCCCC-CCCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCC
T ss_pred             CCCCchhhhhccCcchhceEEEEeC-CCCCCHHHHHHHHHHHHHHHhHHHhCCCCCCCcccccccCCCCCCCCCCCcccc
Confidence            6899999999999999999999995 468889999999999999999999999999899998888888889999999999


Q ss_pred             CCCCCCCceEEeeCcEEEEecCCCCCcccCCCCChHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhccchh
Q 007460          297 APVGKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKE  376 (603)
Q Consensus       297 ~~~~~~~~~f~~~dGV~~v~~~~~~~~~~~pip~~~eF~~D~~~l~~~i~~gp~ksfc~rRL~~Le~KF~Lh~lLN~~~E  376 (603)
                      .++++++++|+|+||||+||.+++..+..+|+|||++|+.|++.|+++|++|+++|||++||+|||+||+||++||+++|
T Consensus        80 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~RL~~Le~kf~l~~~lN~~~E  159 (628)
T d2a3la1          80 YPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKE  159 (628)
T ss_dssp             CCCCCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEcCcEEEEeeCCCCcccccCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            88899999999999999999888778889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCcccceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCccccccccc
Q 007460          377 FLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDV  456 (603)
Q Consensus       377 ~~e~K~vphRDFYNvrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldv  456 (603)
                      ..++|++||||||||||||||||+|||||||+||+|||+|++++||++|+.++|+.+||+|+|++++++++++|||+|+|
T Consensus       160 ~~~~k~~~~rDfyn~~KVDlHvHlsg~m~~k~LLefIk~k~~~~pd~vv~~~~gk~~TL~evfe~~~l~~~dltvd~L~~  239 (628)
T d2a3la1         160 FLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDV  239 (628)
T ss_dssp             HHHGGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCC
T ss_pred             hHhhhcCCCCccccccceeeeeccccCcCHHHHHHHHHHHHhhCCCceEEccCCccccHHHHHHhcCCCcccCChhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccccccccCCCCCchhHHHHhhcccCCCCchhHHHHHHHHHHHHhhhcccceeEEEEEEecCChhHHHHHHHH
Q 007460          457 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASW  536 (603)
Q Consensus       457 had~~tFhRFD~Fn~KyNP~G~s~LReiFLktDN~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSIYGrs~~EW~kLA~W  536 (603)
                      |+++++|||||+||.||||+|+++||++||||||+|+|+|||||||+|+++++++|||++|+|+||||++++||++||.|
T Consensus       240 ~~~~~~f~rfD~Fn~kynp~g~~~Lr~~FLktdn~i~G~ylael~kevl~dle~~~vqy~ElR~S~yg~~~~ew~~lA~w  319 (628)
T d2a3la1         240 HADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASW  319 (628)
T ss_dssp             CSCSSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHH
T ss_pred             ccCchhhhhhhhhcccccchhhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCeEEEEEecccCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCCceEEEEeccchhhccccccccccccccHHHHhhhccccccc-------cCchhhHHH-HHhh
Q 007460          537 IVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCA-HVCA  600 (603)
Q Consensus       537 v~~~~L~S~nnRWlIQIPRly~~~~~~~~~~~g~~~nF~~~l~~NIF~PLf-------~~~~~~~~~-~~~~  600 (603)
                      +++||++|.++||+|||||+|.+     +++.|.+.||+++|+ |||.|||       +||.||.|- +|++
T Consensus       320 ~v~~~l~s~~~rw~Iqv~rly~~-----~r~~g~~~sf~~~L~-nIF~PLfeatl~p~~~p~L~~fL~~VvG  385 (628)
T d2a3la1         320 IVNNDLYSENVVWLIQLPRLYNI-----YKDMGIVTSFQNILD-NIFIPLFEATVDPDSHPQLHVFLKQVVG  385 (628)
T ss_dssp             HHTTTCCCSSEEEEEEEECCHHH-----HTTSSSCSSTHHHHH-HHSSHHHHHHHCGGGSTTTHHHHTTEEE
T ss_pred             HHHcCccccCcceEEEEeeeecH-----HHhCCccccHHHHHH-HHHHHHHHHhhChhhCHHHHHHhCceEE
Confidence            99999999999999999999966     457899999999995 9999999       788888774 3443

PyMOL of d2a3la1

>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}	Back information, alignment and structure