Citrus Sinensis ID: 007463

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600---
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT
cHHHHHHHHHHHHHHHHEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEccccccccccccccccccHHHHccccccEEEcccccHHHcccccccccccccHHccccHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccEEcccHHHHHHHHHHHHccccccccccEEEEEEEEEccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHccEEEEEEcccccEEEEEc
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEcccccccccccEEEcccccHHHHcccccEEEEccccccEEEEcccccccccHHHHHHHHHHHHcccccccHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEccHHHHHHHHHHHHHHHEEEcccccEEEEEEEEEccccccccccccccccccccccEEEEEEEEEccccccHHHccccccccccccccccccccHHHHHHHHHHHHccccEEEEccccEEEEc
MLRALAVGLVVSSLLISVSvvdgdnnfprcncdddasswsIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLThllngwtygphSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNtlglqncavwmpneIKTEMNLThqlngrnysdmcssipitdqdvvrikgsdgvnilgpdselaaassgesvesgpvaairmpmlrvsnfkggtpELVSACYAILVLVLpneqfrtwsNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMsngmrrpmhSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDvmdnspkdsgrfplEIRSFRLHAMIKEAACLARCLSIYRgfgfsievdrslpdhvmgdeRRVFQVILHMVGSLlncnsrrgTVLFRVVSengsqdrndkkwatwrqssvdgdvHIRFEILLNevgsqpevstsVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKkawdlgrevgiimkqkeagvhVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSElaaassgesveSGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVmdnspkdsgrfPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVsengsqdrndkkwatwrqssvdgdVHIRFEILlnevgsqpevstsvaqLGIRRIVNegiedrmsfSVCKKLVQVrisikfpayvftcfrvt
MLRAlavglvvssllisvsvvDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCAtsitlitliplllKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELaaassgesvesgpvaAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT
***ALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNIL*********************AIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVL**********************************************HSILGLLSIMQDVNLNSDQRMIVETM*****VLSTLI*************FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVS*********KKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFR**
**RALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAW*****************HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE*************WRQSSVDGDVHIRFEILLNEVG*************************MSFSVCKKLVQVRISIKFPAYVFTCFRVT
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSEL***********GPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQH*********************ASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE**********WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT
MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENG*******KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN*GIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query603 2.2.26 [Sep-21-2011]
Q0WPQ2 773 Ethylene receptor 2 OS=Ar yes no 0.955 0.745 0.626 0.0
Q9ZTP3 766 Protein EIN4 OS=Arabidops no no 0.935 0.736 0.579 0.0
P93825645 Ethylene response sensor no no 0.855 0.8 0.566 1e-161
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.915 0.732 0.420 1e-120
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.892 0.727 0.418 1e-117
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.857 0.698 0.438 1e-117
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.893 0.728 0.419 1e-117
P49333 738 Ethylene receptor 1 OS=Ar no no 0.782 0.639 0.461 1e-116
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.910 0.740 0.415 1e-116
O49230 735 Ethylene receptor 1 OS=Br N/A no 0.782 0.642 0.461 1e-116
>sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2 Back     alignment and function desciption
 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/600 (62%), Positives = 460/600 (76%), Gaps = 24/600 (4%)

Query: 1   MLRALAVGLVVSSLLISVSVVDGDNN--FPRCNCDDDASS-WSIESILETQKVSDFLIAV 57
           M++ +A  L++ S+++ VS V   N   +PRCNC+D+ +S WS E+ILETQ+VSDFLIAV
Sbjct: 1   MVKEIASWLLILSMVVFVSPVLAINGGGYPRCNCEDEGNSFWSTENILETQRVSDFLIAV 60

Query: 58  AYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFK 117
           AYFSIP+ELLYF+SCSNVPFKWVL +FIAFIVLCG+THLL+GWTY  H F+LM++ TVFK
Sbjct: 61  AYFSIPIELLYFVSCSNVPFKWVLFEFIAFIVLCGMTHLLHGWTYSAHPFRLMMAFTVFK 120

Query: 118 ILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQ 177
           +LTALVSCAT+ITLITLIPLLLKVKVREFMLKKKA +LGREVG+I+ +KE G HVRMLTQ
Sbjct: 121 MLTALVSCATAITLITLIPLLLKVKVREFMLKKKAHELGREVGLILIKKETGFHVRMLTQ 180

Query: 178 EIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPI 237
           EIRKSLDRHTILYTTLVELS TLGLQNCAVWMPN+  TEM+LTH+L GR     C S+ +
Sbjct: 181 EIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNDGGTEMDLTHELRGRGGYGGC-SVSM 239

Query: 238 TDQDVVRIKGSDGVNILGPDSELAAAS--SGESVESGPVAAIRMPMLRVSNFKGGTPELV 295
            D DVVRI+ SD VN+L  DS +A AS   G+  E G VAAIRMPMLRVS+F G   EL 
Sbjct: 240 EDLDVVRIRESDEVNVLSVDSSIARASGGGGDVSEIGAVAAIRMPMLRVSDFNG---EL- 295

Query: 296 SACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRA 355
              YAILV VLP    R W+ QE+EIVKVVADQV VAL HAAVLEESQ MREKL EQNRA
Sbjct: 296 --SYAILVCVLPGGTPRDWTYQEIEIVKVVADQVTVALDHAAVLEESQLMREKLAEQNRA 353

Query: 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSS 415
           LQ A++DAL ASQARNAFQK MS GMRRPMHSILGLLS++QD  L+ +Q+MIV+TM+K+ 
Sbjct: 354 LQMAKRDALRASQARNAFQKTMSEGMRRPMHSILGLLSMIQDEKLSDEQKMIVDTMVKTG 413

Query: 416 NVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSL 475
           NV+S L+ D MD      GRF  E++ F LH  I EAAC+ARCL +  G  F ++ ++SL
Sbjct: 414 NVMSNLVGDSMDVP---DGRFGTEMKPFSLHRTIHEAACMARCLCLCNGIRFLVDAEKSL 470

Query: 476 PDHVMGDERRVFQVILHMVGSLLNCNSRR--GTVLFRVVSENGSQDRNDKKWATWRQ--S 531
           PD+V+GDERRVFQVILH+VGSL+    R+   +++F+V+ E GS DR+D +WA WR   S
Sbjct: 471 PDNVVGDERRVFQVILHIVGSLVKPRKRQEGSSLMFKVLKERGSLDRSDHRWAAWRSPAS 530

Query: 532 SVDGDVHIRFEILLNEVGSQPEVSTSVA----QLG-IRRIVNEGIEDRMSFSVCKKLVQV 586
           S DGDV+IRFE+ +    S  +   SV+    ++G +R     G+   +SF VCKK+VQ+
Sbjct: 531 SADGDVYIRFEMNVENDDSSSQSFASVSSRDQEVGDVRFSGGYGLGQDLSFGVCKKVVQL 590
Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9ZTP3|EIN4_ARATH Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1 Back     alignment and function description
>sp|P93825|ERS2_ARATH Ethylene response sensor 2 OS=Arabidopsis thaliana GN=ERS2 PE=1 SV=2 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|O49230|ETR1_BRAOL Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query603
283520944 764 ethylene response 2 [Citrus sinensis] gi 0.971 0.767 0.994 0.0
255576860 764 ethylene receptor, putative [Ricinus com 0.933 0.736 0.785 0.0
224111018 768 ethylene receptor 2 [Populus trichocarpa 0.970 0.761 0.754 0.0
54260394 767 ethylene receptor [Pyrus pyrifolia] 0.966 0.760 0.764 0.0
15131533 765 ethylene receptor [Fragaria x ananassa] 0.968 0.763 0.756 0.0
302035371 767 putative ethylene receptor [Pyrus commun 0.966 0.760 0.764 0.0
224099905 762 ethylene receptor 5 [Populus trichocarpa 0.970 0.767 0.751 0.0
114229335 767 ethylene receptor 2 [Malus x domestica] 0.932 0.732 0.776 0.0
159031783 767 ethylene receptor [Cucumis melo var. can 0.968 0.761 0.732 0.0
111183356 763 ethylene receptor [Ziziphus jujuba] 0.965 0.762 0.738 0.0
>gi|283520944|gb|ADB25214.1| ethylene response 2 [Citrus sinensis] gi|283520952|gb|ADB25218.1| ethylene response 2 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/586 (99%), Positives = 585/586 (99%)

Query: 1   MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF 60
           MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF
Sbjct: 1   MLRALAVGLVVSSLLISVSVVDGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF 60

Query: 61  SIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILT 120
           SIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILT
Sbjct: 61  SIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILT 120

Query: 121 ALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIR 180
           ALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIR
Sbjct: 121 ALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIR 180

Query: 181 KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ 240
           KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ
Sbjct: 181 KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ 240

Query: 241 DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYA 300
           DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYA
Sbjct: 241 DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYA 300

Query: 301 ILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQ 360
           ILVLVLPNEQFRTWSNQELEIVKVVADQV VALSHAAVLEESQHMREKLEEQNRALQQAQ
Sbjct: 301 ILVLVLPNEQFRTWSNQELEIVKVVADQVAVALSHAAVLEESQHMREKLEEQNRALQQAQ 360

Query: 361 KDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST 420
           KDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST
Sbjct: 361 KDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST 420

Query: 421 LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVM 480
           LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVM
Sbjct: 421 LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVM 480

Query: 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIR 540
           GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRND+KWATWRQSSVDGDVHIR
Sbjct: 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDQKWATWRQSSVDGDVHIR 540

Query: 541 FEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQV 586
           FEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQ+
Sbjct: 541 FEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQL 586

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576860|ref|XP_002529316.1| ethylene receptor, putative [Ricinus communis] gi|223531240|gb|EEF33085.1| ethylene receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224111018|ref|XP_002315717.1| ethylene receptor 2 [Populus trichocarpa] gi|222864757|gb|EEF01888.1| ethylene receptor 2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|54260394|dbj|BAD61003.1| ethylene receptor [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|15131533|emb|CAC48386.1| ethylene receptor [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|302035371|gb|ADK92392.1| putative ethylene receptor [Pyrus communis] Back     alignment and taxonomy information
>gi|224099905|ref|XP_002311669.1| ethylene receptor 5 [Populus trichocarpa] gi|222851489|gb|EEE89036.1| ethylene receptor 5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|114229335|gb|ABI58286.1| ethylene receptor 2 [Malus x domestica] Back     alignment and taxonomy information
>gi|159031783|dbj|BAF91863.1| ethylene receptor [Cucumis melo var. cantalupensis] gi|159031785|dbj|BAF91864.1| ethylene receptor [Cucumis melo var. cantalupensis] Back     alignment and taxonomy information
>gi|111183356|gb|ABH07935.1| ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query603
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.912 0.711 0.610 1.4e-172
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.932 0.733 0.544 8.9e-157
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.913 0.854 0.520 5.5e-141
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.915 0.732 0.404 2e-104
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.784 0.640 0.439 1.1e-101
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.913 0.867 0.378 3.4e-93
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.769 0.756 0.421 1.3e-91
UNIPROTKB|Q9KLN4 1020 VC_A0709 "Sensor protein TorS" 0.313 0.185 0.292 9.1e-14
TIGR_CMR|VC_A0709 1020 VC_A0709 "sensor protein TorS" 0.313 0.185 0.292 9.1e-14
UNIPROTKB|Q9KPC0 927 VC_2453 "Sensor histidine kina 0.310 0.201 0.293 1.3e-13
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
 Identities = 349/572 (61%), Positives = 423/572 (73%)

Query:    27 FPRCNCDDDASS-WSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFI 85
             +PRCNC+D+ +S WS E+ILETQ+VSDFLIAVAYFSIP+ELLYF+SCSNVPFKWVL +FI
Sbjct:    29 YPRCNCEDEGNSFWSTENILETQRVSDFLIAVAYFSIPIELLYFVSCSNVPFKWVLFEFI 88

Query:    86 AFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCAXXXXXXXXXXXXXKVKVRE 145
             AFIVLCG+THLL+GWTY  H F+LM++ TVFK+LTALVSCA             KVKVRE
Sbjct:    89 AFIVLCGMTHLLHGWTYSAHPFRLMMAFTVFKMLTALVSCATAITLITLIPLLLKVKVRE 148

Query:   146 FMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNC 205
             FMLKKKA +LGREVG+I+ +KE G HVRMLTQEIRKSLDRHTILYTTLVELS TLGLQNC
Sbjct:   149 FMLKKKAHELGREVGLILIKKETGFHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNC 208

Query:   206 AVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELXXXXX 265
             AVWMPN+  TEM+LTH+L GR     CS + + D DVVRI+ SD VN+L  DS +     
Sbjct:   209 AVWMPNDGGTEMDLTHELRGRGGYGGCS-VSMEDLDVVRIRESDEVNVLSVDSSIARASG 267

Query:   266 XXXXXXX--XXXAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVK 323
                         AIRMPMLRVS+F G   EL    YAILV VLP    R W+ QE+EIVK
Sbjct:   268 GGGDVSEIGAVAAIRMPMLRVSDFNG---EL---SYAILVCVLPGGTPRDWTYQEIEIVK 321

Query:   324 VVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRR 383
             VVADQV VAL HAAVLEESQ MREKL EQNRALQ A++DAL ASQARNAFQK MS GMRR
Sbjct:   322 VVADQVTVALDHAAVLEESQLMREKLAEQNRALQMAKRDALRASQARNAFQKTMSEGMRR 381

Query:   384 PMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443
             PMHSILGLLS++QD  L+ +Q+MIV+TM+K+ NV+S L+ D MD  P   GRF  E++ F
Sbjct:   382 PMHSILGLLSMIQDEKLSDEQKMIVDTMVKTGNVMSNLVGDSMD-VP--DGRFGTEMKPF 438

Query:   444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSR 503
              LH  I EAAC+ARCL +  G  F ++ ++SLPD+V+GDERRVFQVILH+VGSL+    R
Sbjct:   439 SLHRTIHEAACMARCLCLCNGIRFLVDAEKSLPDNVVGDERRVFQVILHIVGSLVKPRKR 498

Query:   504 R--GTVLFRVVSENGSQDRNDKKWATWRQ--SSVDGDVHIRFEILLNEVGSQPEVSTSVA 559
             +   +++F+V+ E GS DR+D +WA WR   SS DGDV+IRFE+ +    S  +   SV+
Sbjct:   499 QEGSSLMFKVLKERGSLDRSDHRWAAWRSPASSADGDVYIRFEMNVENDDSSSQSFASVS 558

Query:   560 ----QLG-IRRIVNEGIEDRMSFSVCKKLVQV 586
                 ++G +R     G+   +SF VCKK+VQ+
Sbjct:   559 SRDQEVGDVRFSGGYGLGQDLSFGVCKKVVQL 590
GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA
GO:0000156 "phosphorelay response regulator activity" evidence=IEA
GO:0000160 "phosphorelay signal transduction system" evidence=IEA
GO:0004673 "protein histidine kinase activity" evidence=IEA;ISS
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0009873 "ethylene mediated signaling pathway" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0004674 "protein serine/threonine kinase activity" evidence=TAS
GO:0051740 "ethylene binding" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLN4 VC_A0709 "Sensor protein TorS" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0709 VC_A0709 "sensor protein TorS" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WPQ2ETR2_ARATH2, ., 7, ., 1, 1, ., -0.62660.95520.7451yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.766
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ETR2
ethylene receptor 2 (768 aa)
(Populus trichocarpa)
Predicted Functional Partners:
ACS6
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (440 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 3e-18
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 4e-12
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 2e-10
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 1e-08
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 2e-08
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 5e-08
pfam01590143 pfam01590, GAF, GAF domain 1e-07
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 4e-07
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 7e-06
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 2e-05
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 4e-05
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 1e-04
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information 
 Score = 88.7 bits (220), Expect = 3e-18
 Identities = 63/271 (23%), Positives = 126/271 (46%), Gaps = 33/271 (12%)

Query: 341 ESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL 400
           E     E+L  + +   +A+ +A  A++A++AF   MS+ +R P++ ILG L ++ D  L
Sbjct: 435 ELAETNERLNAEVKNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL 494

Query: 401 NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLS 460
            S Q+  ++ + +S   L  +++D++D S  ++G   +  R F L+A++ +   L    +
Sbjct: 495 TSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRA 554

Query: 461 IYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDR 520
             +G    + +   LP+   GD  R+ QV++++VG+ +     RG+V+ RV         
Sbjct: 555 QLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTD-RGSVVLRV--------- 604

Query: 521 NDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQL-----GIRRIVNEGIEDRM 575
                      S++ D  + FE+     G   E   ++        G RR    G    +
Sbjct: 605 -----------SLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGRRRSGGTG----L 649

Query: 576 SFSVCKKLVQV---RISIKFPAYVFTCFRVT 603
             ++ ++LV+     + ++    V +CF  T
Sbjct: 650 GLAISQRLVEAMDGELGVESELGVGSCFWFT 680

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 603
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
PRK13837 828 two-component VirA-like sensor kinase; Provisional 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK10618 894 phosphotransfer intermediate protein in two-compon 100.0
COG4251750 Bacteriophytochrome (light-regulated signal transd 100.0
PRK10841 924 hybrid sensory kinase in two-component regulatory 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
PRK10364457 sensor protein ZraS; Provisional 99.98
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.98
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.98
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.97
COG4191603 Signal transduction histidine kinase regulating C4 99.97
PRK10815485 sensor protein PhoQ; Provisional 99.97
PRK10604433 sensor protein RstB; Provisional 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.97
PRK10337449 sensor protein QseC; Provisional 99.97
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.97
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.97
PRK09835482 sensor kinase CusS; Provisional 99.97
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.97
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.96
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.96
PRK09467435 envZ osmolarity sensor protein; Provisional 99.96
PRK11100475 sensory histidine kinase CreC; Provisional 99.95
PRK09470461 cpxA two-component sensor protein; Provisional 99.95
COG5000712 NtrY Signal transduction histidine kinase involved 99.95
PRK11360607 sensory histidine kinase AtoS; Provisional 99.95
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.94
PRK13557 540 histidine kinase; Provisional 99.94
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.93
PRK13560807 hypothetical protein; Provisional 99.93
PRK11644495 sensory histidine kinase UhpB; Provisional 99.92
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.92
COG4192673 Signal transduction histidine kinase regulating ph 99.92
PRK11086542 sensory histidine kinase DcuS; Provisional 99.89
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.88
COG3290537 CitA Signal transduction histidine kinase regulati 99.87
PRK13559361 hypothetical protein; Provisional 99.84
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.81
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.74
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.68
PRK10547 670 chemotaxis protein CheA; Provisional 99.63
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.44
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.42
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.38
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.33
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.33
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.31
COG3920221 Signal transduction histidine kinase [Signal trans 99.3
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 99.27
COG3275557 LytS Putative regulator of cell autolysis [Signal 99.26
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.23
COG4585365 Signal transduction histidine kinase [Signal trans 99.22
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.2
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.2
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.17
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.14
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.07
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 98.99
COG2972456 Predicted signal transduction protein with a C-ter 98.99
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.96
PRK03660146 anti-sigma F factor; Provisional 98.96
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.9
PRK04069161 serine-protein kinase RsbW; Provisional 98.85
COG4564459 Signal transduction histidine kinase [Signal trans 98.84
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.79
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.77
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.73
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.71
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.65
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.65
COG3605 756 PtsP Signal transduction protein containing GAF an 98.63
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 98.38
PF14501100 HATPase_c_5: GHKL domain 98.35
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.29
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.28
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.26
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 97.97
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 97.8
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 97.78
PRK13558665 bacterio-opsin activator; Provisional 97.76
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 97.19
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 96.86
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 96.75
COG1956163 GAF domain-containing protein [Signal transduction 96.55
PF13493105 DUF4118: Domain of unknown function (DUF4118); PDB 96.32
COG5385214 Uncharacterized protein conserved in bacteria [Fun 96.24
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 96.23
PF10090182 DUF2328: Uncharacterized protein conserved in bact 95.99
PRK10963223 hypothetical protein; Provisional 95.46
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 95.37
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 95.09
PRK05644 638 gyrB DNA gyrase subunit B; Validated 94.85
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 94.33
PRK14083 601 HSP90 family protein; Provisional 94.11
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 93.75
PRK05218 613 heat shock protein 90; Provisional 92.6
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 92.15
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 92.05
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 91.6
COG3159218 Uncharacterized protein conserved in bacteria [Fun 91.58
COG5381184 Uncharacterized protein conserved in bacteria [Fun 91.13
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 90.41
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 87.6
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 87.25
COG4251750 Bacteriophytochrome (light-regulated signal transd 85.49
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 84.88
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 84.72
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 83.7
PTZ00130 814 heat shock protein 90; Provisional 80.49
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-68  Score=566.85  Aligned_cols=461  Identities=14%  Similarity=0.152  Sum_probs=400.2

Q ss_pred             hhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHhHHhh-----------cCcchHHHHHHHHHHHH
Q 007463           51 SDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQLMLSLTVFKI  118 (603)
Q Consensus        51 sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  118 (603)
                      .|++++++++++.+.+++++... +.+|..|+|++||++++...|.++++++           |.+|.|+|. +.++.++
T Consensus       397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~  475 (890)
T COG2205         397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL  475 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence            68999999999999999988766 8999999999999999999999988866           377777665 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHh
Q 007463          119 LTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSN  198 (603)
Q Consensus       119 lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~  198 (603)
                      +|+.||+++|++++.|                 +.++++|....++|+++++.|+++++.++.+.+.++++.++..++.+
T Consensus       476 vTf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~  538 (890)
T COG2205         476 VTFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS  538 (890)
T ss_pred             HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999                 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEE
Q 007463          199 TLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIR  278 (603)
Q Consensus       199 ~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  278 (603)
                      +++. ++++++|++++..                  .+...|+-   +...+..+.+|......+++.+++++....+.+
T Consensus       539 ~~~~-~v~i~l~~~~~~~------------------~~~~~~~~---l~~~d~aaa~W~~~~~~~AG~gTdTlpg~~~~~  596 (890)
T COG2205         539 LLNQ-RVVILLPDDNGKL------------------QPLGNPDG---LSADDRAAAQWAFENGKPAGAGTDTLPGAKYLY  596 (890)
T ss_pred             HhCC-ceEEEEecCCccc------------------ccccCCcc---ccHHHHHHhhchhhCCCccccCCCCCCCCceeE
Confidence            9999 6899999877422                  11111110   111122233455556678888889999999999


Q ss_pred             ecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463          279 MPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ  358 (603)
Q Consensus       279 ~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~  358 (603)
                      +|+...+..             .|++.+.+.......+++..++.++++|+|.|+++..+.++              .++
T Consensus       597 lPl~~~~~~-------------~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~--------------~~~  649 (890)
T COG2205         597 LPLKSGGKV-------------LGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEE--------------AEQ  649 (890)
T ss_pred             eecccCCce-------------EEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence            998744444             55667666656668999999999999999999999998887              344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhc--cCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCC
Q 007463          359 AQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD--VNLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSGR  435 (603)
Q Consensus       359 a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~--~~~~~~-~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~  435 (603)
                      ++.++ +.++.|+.|++++||||||||++|.|.++.|..  ..++++ +.+.+..|.+++++|.++|+|||||+|+++|.
T Consensus       650 a~l~~-e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~  728 (890)
T COG2205         650 ARLAA-ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGG  728 (890)
T ss_pred             HHHHH-HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence            44433 338899999999999999999999999999985  445665 67899999999999999999999999999999


Q ss_pred             ccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeec
Q 007463          436 FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSEN  515 (603)
Q Consensus       436 ~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~  515 (603)
                      ++++++|..+.+++.+++..++.....+  .+.++++.++| .+.+|..+++||+.||++||+||+|++++|.|.+....
T Consensus       729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~  805 (890)
T COG2205         729 VNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER  805 (890)
T ss_pred             cccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec
Confidence            9999999999999999999998877655  58888899999 89999999999999999999999999999999999886


Q ss_pred             CCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec--
Q 007463          516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF--  592 (603)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~--  592 (603)
                      ++                     ++|+|.|+|||||+++.++||++|+|..+ +...|+||||+|||.||++|||+|+  
T Consensus       806 ~~---------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~  864 (890)
T COG2205         806 EN---------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAE  864 (890)
T ss_pred             ce---------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEE
Confidence            54                     99999999999999999999999999443 4578999999999999999999999  


Q ss_pred             -cCCcceEEEEC
Q 007463          593 -PAYVFTCFRVT  603 (603)
Q Consensus       593 -~~g~Gt~f~it  603 (603)
                       .+++|++|+|+
T Consensus       865 ~~~~gGa~f~~~  876 (890)
T COG2205         865 NNPGGGAIFVFT  876 (890)
T ss_pred             EcCCCceEEEEE
Confidence             77889999984

>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 3e-22
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 4e-13
3p01_A184 Two-component response regulator; PSI-2, midwest c 8e-09
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 2e-07
2qyb_A181 Membrane protein, putative; GAF domain, domain of 2e-06
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 3e-05
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score = 95.7 bits (239), Expect = 3e-22
 Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 340 EESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV- 398
             S  +         AL         A + +  F   +S  +R P+ +I+G   +++   
Sbjct: 10  HSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERAD 69

Query: 399 NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARC 458
            ++   R  V  +  ++  L+  I DV+D +  D+G   LEI   R+  ++  A   A  
Sbjct: 70  GISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALK 129

Query: 459 LSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVG 495
            +   G   ++E +  +   + GD +R+ Q + H+V 
Sbjct: 130 DAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVE 165
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query603
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 100.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 100.0
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 100.0
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.98
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.98
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.98
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 99.98
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 99.97
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.97
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.97
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 99.92
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.92
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.9
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.9
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.9
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.88
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.87
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.87
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.85
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.77
3zxo_A129 Redox sensor histidine kinase response regulator; 99.74
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.67
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.56
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.54
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.54
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.54
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.52
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.52
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.48
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.47
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.46
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.45
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.43
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.41
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.39
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.34
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.3
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.28
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.2
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.18
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.17
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.16
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.15
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.11
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 99.1
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.08
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 99.07
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.06
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 99.04
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 99.02
4e04_A327 Bacteriophytochrome (light-regulated signal trans 99.01
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 98.99
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 98.98
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 98.97
1vhm_A195 Protein YEBR; structural genomics, unknown functio 98.96
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 98.96
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 98.93
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.73
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 98.72
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.7
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 98.66
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.54
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.53
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.52
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.48
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.4
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.38
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.27
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.26
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.15
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 98.14
2ksf_A107 Sensor protein KDPD; methods development, histidin 97.94
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.9
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 97.75
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 97.01
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 96.98
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 96.81
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 96.63
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 96.39
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 96.24
3e98_A252 GAF domain of unknown function; structural genomic 96.0
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 95.64
4duh_A220 DNA gyrase subunit B; structure-based drug design, 95.63
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 95.58
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 95.32
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 95.24
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 95.18
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 95.06
1qy5_A 269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 95.04
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 94.22
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 93.96
3peh_A 281 Endoplasmin homolog; structural genomics, structur 93.93
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 93.81
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 93.77
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 93.75
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 93.04
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 92.49
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 92.03
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 92.0
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 85.59
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-37  Score=308.50  Aligned_cols=220  Identities=15%  Similarity=0.174  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccce
Q 007463          363 ALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV--N-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLE  439 (603)
Q Consensus       363 ~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~--~-~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~  439 (603)
                      +++.++.+.+|++.+||||||||++|.++++++.+.  . ..++.+++++.|.+.++++..++++++++++++.+...++
T Consensus        13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~   92 (258)
T 2c2a_A           13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN   92 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence            344467788999999999999999999999998742  2 2344678999999999999999999999999999988889


Q ss_pred             eeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCC---cEEEEEEEeecC
Q 007463          440 IRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENG  516 (603)
Q Consensus       440 ~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~---g~i~i~v~~~~~  516 (603)
                      .+++++.+++++++..++..+..+++.+.++.+.+.|..+.+|+.++.||+.||+.||+||++++   +.|.|.+...++
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~  172 (258)
T 2c2a_A           93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG  172 (258)
T ss_dssp             CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred             cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence            99999999999999999999999999999887644454789999999999999999999998654   568887766543


Q ss_pred             CCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC---CCCCCCchHHHHHHHHHHhCCeec-
Q 007463          517 SQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---EGIEDRMSFSVCKKLVQVRISIKF-  592 (603)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---~~~G~GLGL~i~k~iv~~~gG~I~-  592 (603)
                                           .+.|+|.|+|+|||++..+++|++|++....   +.+|+||||+|||++++.|||+|+ 
T Consensus       173 ---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v  231 (258)
T 2c2a_A          173 ---------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV  231 (258)
T ss_dssp             ---------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred             ---------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence                                 3889999999999999999999999985432   346999999999999999999999 


Q ss_pred             --cCCcceEEEEC
Q 007463          593 --PAYVFTCFRVT  603 (603)
Q Consensus       593 --~~g~Gt~f~it  603 (603)
                        .+|+||+|+|+
T Consensus       232 ~s~~~~Gt~f~i~  244 (258)
T 2c2a_A          232 ESEVGKGSRFFVW  244 (258)
T ss_dssp             EEETTTEEEEEEE
T ss_pred             EecCCCCcEEEEE
Confidence              67899999984
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli} Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 603
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 0.001
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 438 LEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVG 495
           +      L  +++ A    +  +         E +   P     D  R+ QV+L+++ 
Sbjct: 2   INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLN 59

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query603
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.97
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.96
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.96
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.95
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.93
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.92
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.92
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.78
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.49
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.46
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.4
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.36
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.34
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.33
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.18
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 99.12
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 99.11
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 99.03
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 99.0
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 99.0
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.88
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.85
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.35
d1h7sa2 203 DNA mismatch repair protein PMS2 {Human (Homo sapi 96.98
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 96.62
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 95.02
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 93.85
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 93.48
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 93.45
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 93.41
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 92.36
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 92.32
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=5.2e-31  Score=241.48  Aligned_cols=145  Identities=13%  Similarity=0.118  Sum_probs=125.1

Q ss_pred             ceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc---EEEEEEEee
Q 007463          438 LEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSE  514 (603)
Q Consensus       438 l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~  514 (603)
                      ++++++|+.+++++++..++..+..+++.+.++.+.+.|..+.+|+.+|.||+.||++||+||+++++   .|.+.+...
T Consensus         2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~   81 (161)
T d2c2aa2           2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK   81 (161)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred             CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEec
Confidence            57789999999999999999999999999999887766657999999999999999999999988776   477776655


Q ss_pred             cCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHHHHHHhCCee
Q 007463          515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQVRISIK  591 (603)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I  591 (603)
                      ++                     ++.|+|+|+|+|||++.++++|++|++...   .+.+|+||||+|||+||++|||+|
T Consensus        82 ~~---------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i  140 (161)
T d2c2aa2          82 DG---------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRI  140 (161)
T ss_dssp             TT---------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEE
T ss_pred             CC---------------------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHHHHHHCCCEE
Confidence            33                     389999999999999999999999998543   345699999999999999999999


Q ss_pred             c---cCCcceEEEEC
Q 007463          592 F---PAYVFTCFRVT  603 (603)
Q Consensus       592 ~---~~g~Gt~f~it  603 (603)
                      +   .+|+||+|+|+
T Consensus       141 ~v~s~~~~Gt~f~i~  155 (161)
T d2c2aa2         141 WVESEVGKGSRFFVW  155 (161)
T ss_dssp             EEEEETTTEEEEEEE
T ss_pred             EEEecCCCeeEEEEE
Confidence            9   78899999984
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure