Citrus Sinensis ID: 007465

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600---
MSQEQNLEEGTAGEHRDGTNSVSGNIQMQEIRSIRKLQKSSCNIAKGQPCVKKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPPTIRSKQLVETQIIAKEK
cccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccEEccccccHHHHHHHHHHHHHHHcccEEEEEEEEccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEccccccEEEEEEEEEEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEcccEEEEcccccccccccccHHHHHHHHccccccccccccccccccEEEEccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcc
ccccHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccEEcccccHHHHHHHHHHHHHHHHcHHHHHEHEcccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccEEHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHcccccEEEEEcccccEEEEEEEccEEEEEcccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccHcEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
msqeqnleegtagehrdgtnsvsgniQMQEIRSIRKLQksscniakgqpcvKKIFDTHGSYGNWVFLVWCVIVIFVDTWflyipmvngdkkcieFDNDLWIAASACRSVFDLFYIIDNVFrlhtgiskssrKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKacinhdgcgdgsfycddhledrkflngfcptnnqnstifdfgifsdafqsgvvetkdfkRRLYYCFRWgvqslssfgqglqtstnpwENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWdetrnfnienlvynlpedlgrdIKSELCLELLKKVEEFGKWRKALLDDLCEFVkpvvfmensyivpeggsiDKMVFVVQGNLltynsegitaappntdnydcnicgEELVAWAQDactrtdssssalpistITIQALTKVEAFILMADDLKNVLLIkhnraapfiqAARFITIVMGAikgtflpstrtaetstqeqvpptirsKQLVETQIIAKEK
msqeqnleegtagehrdgtnsvsgniQMQEIRSIRKLQKSSCNIAKGQPCVKKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDACTrtdssssalpisTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFlpstrtaetstqeqvpptirskqlvetqiiakek
MSQEQNLEEGTAGEHRDGTNSVSGNIQMQEIRSIRKLQKSSCNIAKGQPCVKKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIkselclellkkveeFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPPTIRSKQLVETQIIAKEK
****************************************SCNIAKGQPCVKKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGM*****ELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFL*********************************
***************************************************KKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDA************ISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIV**************AETSTQEQVPP*****************
*******************NSVSGNIQMQEIRSIRKLQKSSCNIAKGQPCVKKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQD**********ALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPST**************IRSKQLVETQIIAKEK
***************************************************KKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPPTIRSKQLVETQII****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSQEQNLEEGTAGEHRDGTNSVSGNIQMQEIRSIRKLQKSSCNIAKGQPCVKKIFDTHGSYGNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELALGFSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRKLSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPPTIRSKQLVETQIIAKEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query603 2.2.26 [Sep-21-2011]
O65717716 Cyclic nucleotide-gated i yes no 0.812 0.684 0.421 1e-105
Q9LNJ0711 Probable cyclic nucleotid no no 0.796 0.675 0.389 2e-93
Q9LD40696 Putative cyclic nucleotid no no 0.799 0.692 0.395 2e-91
Q9SKD7706 Probable cyclic nucleotid no no 0.789 0.674 0.392 1e-89
O82226747 Probable cyclic nucleotid no no 0.787 0.635 0.353 3e-84
Q9M0A4733 Putative cyclic nucleotid no no 0.859 0.706 0.339 3e-84
Q8RWS9717 Probable cyclic nucleotid no no 0.800 0.673 0.352 9e-84
Q9FXH6753 Putative cyclic nucleotid no no 0.794 0.636 0.335 2e-75
Q9S9N5738 Putative cyclic nucleotid no no 0.796 0.650 0.328 6e-74
Q9SKD6621 Cyclic nucleotide-gated i no no 0.797 0.774 0.340 1e-68
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/532 (42%), Positives = 320/532 (60%), Gaps = 42/532 (7%)

Query: 44  IAKGQPCVKKIFDTHGSY---GNWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLW 100
           ++KG     KI D  G +    N +F++ C+I + +D  F Y+P+++  KKC+  D  + 
Sbjct: 74  VSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKME 133

Query: 101 IAASACRSVFDLFYIIDNVFRLHTG-ISKSSR--KRSWLL--------------FLSDVL 143
           I AS  RS  D+FY++  +F+  TG I+ SSR   R  L+              F+ D+L
Sbjct: 134 ITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDIL 193

Query: 144 FILPIPQVLLILAMIQRMRGTEFSFAVKFFL-----FQHVLRTIQIYRVYMK----AQVP 194
            +LP+PQ ++IL +I  MRG+  S   K  L     FQ++ R I+IY +Y +    + + 
Sbjct: 194 AVLPLPQ-MVILIIIPHMRGSS-SLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGIL 251

Query: 195 SRHAELALGFS-FSYIQTSNVIGALWYFFAIKSESVCWKKAC-INHDGCGDGSFYCDDHL 252
           +  A     F+ F Y+  S+V GA WY F+I+ E+VCWK+AC  N+  C     YCD   
Sbjct: 252 TETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPET 311

Query: 253 ED-RKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQ 311
                FLN  CP    N+T+FDFGIF DA QSGVVE++DF ++ +YCF WG+Q+LSS GQ
Sbjct: 312 AGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQ 371

Query: 312 GLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQWLPFR 370
            L+TST  WE  FA+ I+  G+ L   L+G +QTY +S +  LE MR K ++ EQW+  R
Sbjct: 372 NLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHR 431

Query: 371 KLSQNLQQQI-KYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWR 429
            L +NL+++I +Y  + W ETR  + ENL+ NLP+DL RDIK  LCL LL +V  F K  
Sbjct: 432 LLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMD 491

Query: 430 KALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDC 489
           + LLD LC+ ++PV++ E SYIV EG  +D+M+F+++G LLT  + G      N++    
Sbjct: 492 EQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGA 551

Query: 490 -NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNV 540
            + CGEEL+ WA D       SSS LPIST T++AL +VEAF L ADDLK V
Sbjct: 552 GDFCGEELLTWALDP-----HSSSNLPISTRTVRALMEVEAFALKADDLKFV 598
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description
>sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 Back     alignment and function description
>sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKD6|CNG11_ARATH Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query603
255545024 838 Cyclic nucleotide-gated ion channel, put 0.844 0.607 0.415 1e-108
225462733 709 PREDICTED: cyclic nucleotide-gated ion c 0.862 0.733 0.415 1e-107
224135235 708 predicted protein [Populus trichocarpa] 0.865 0.737 0.409 1e-106
6969231 708 cyclic nucleotide-gated calmodulin-bindi 0.799 0.680 0.422 1e-105
297796139 716 hypothetical protein ARALYDRAFT_918383 [ 0.812 0.684 0.422 1e-104
15238657 716 cyclic nucleotide-gated ion channel 1 [A 0.812 0.684 0.421 1e-104
224118210 709 predicted protein [Populus trichocarpa] 0.837 0.712 0.403 1e-103
449456377 713 PREDICTED: cyclic nucleotide-gated ion c 0.875 0.740 0.401 1e-102
356516029 715 PREDICTED: cyclic nucleotide-gated ion c 0.867 0.731 0.392 1e-102
356509281 715 PREDICTED: cyclic nucleotide-gated ion c 0.867 0.731 0.392 1e-101
>gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/554 (41%), Positives = 332/554 (59%), Gaps = 45/554 (8%)

Query: 23  SGNIQMQEIRSIRKLQKSSCNIAKGQPCVKKIFDTHGSY---GNWVFLVWCVIVIFVDTW 79
           SG+ +++ IR   K       + KG     KI D  G +    N +F++ C+I + +D  
Sbjct: 52  SGSERIKRIRKSLKSYSFGSAVTKGLNSGNKILDPQGPFLQRWNKIFVLSCLIAVSLDPL 111

Query: 80  FLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTG-ISKSSR------- 131
           F Y+P++N  +KC+  D+ + I AS  R   D+FYII  +F+  TG I+ SSR       
Sbjct: 112 FFYVPVINDIEKCLGLDSRMEIVASVLRWFTDIFYIIHIIFQFRTGFIAPSSRVFGRGVL 171

Query: 132 -KRSWLL--------FLSDVLFILPIPQVLLILAMIQRMRGTE-------FSFAVKFFLF 175
            + +W +        FL D+L +LP+PQV+ IL +I +M+G+          F V   LF
Sbjct: 172 VEDTWEIAKRYLSSYFLIDILAVLPLPQVV-ILIIIPKMKGSRSLNTKNLLKFVV---LF 227

Query: 176 QHVLRTIQIYRVYMK----AQVPSRHAELALGFS-FSYIQTSNVIGALWYFFAIKSESVC 230
           Q++ R ++IY +Y +    + + +  A     F+ F Y+  S+V+GA WY  +I+ E+VC
Sbjct: 228 QYIPRFMRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLVSIERETVC 287

Query: 231 WKKACINHDGCGDGSFYCDDHLE-DRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETK 289
           WKKAC +H GC   S YC +    ++ FL+G CP    N+ IF+FGIF DA QSGVV T 
Sbjct: 288 WKKACDDHIGCVRDSLYCGNQAGVNKTFLDGACPVQIPNTEIFNFGIFLDALQSGVVATH 347

Query: 290 DFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKS 349
           DF ++ +YCF WG+++LSS GQ L+TST  WE  FA+ I+  G+ L   L+G +QTY +S
Sbjct: 348 DFPKKFFYCFWWGLRNLSSLGQNLETSTFVWEICFAVSISIFGLVLFSFLIGNMQTYLQS 407

Query: 350 GSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLG 407
            +  LE MR K ++ EQW+  R L +NL+++I+ H  + W ETR  + ENLV NLP DL 
Sbjct: 408 TTTRLEEMRVKRRDAEQWMSHRLLPENLRERIRRHEQYKWQETRGVDEENLVCNLPRDLR 467

Query: 408 RDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQG 467
           RDIK  LCL LL +V  F K  + LLD +C+ +KP ++ E SYIV EG  +D+M+F+++G
Sbjct: 468 RDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPALYTEESYIVREGDPVDEMLFIMRG 527

Query: 468 NLLTYNSEGITAAPPNTDNYDC-NICGEELVAWAQDACTRTDSSSSALPISTITIQALTK 526
            LLT  + G      N++     + CGEEL+ WA D      +SSS LPIST T+Q LT+
Sbjct: 528 KLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDP-----NSSSNLPISTRTVQTLTE 582

Query: 527 VEAFILMADDLKNV 540
           VEAF LMADDLK V
Sbjct: 583 VEAFALMADDLKFV 596

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query603
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.658 0.554 0.434 2e-96
TAIR|locus:2125206696 CNGC13 "cyclic nucleotide-gate 0.656 0.568 0.383 5.1e-83
TAIR|locus:2039084706 CNGC3 "cyclic nucleotide gated 0.653 0.558 0.401 2.8e-80
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.540 0.441 0.372 1.1e-77
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.538 0.431 0.368 6.9e-74
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.600 0.484 0.370 1.2e-73
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.600 0.493 0.368 4.1e-73
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.543 0.457 0.375 8.6e-73
TAIR|locus:2039099621 CNGC11 "cyclic nucleotide-gate 0.671 0.652 0.345 2.3e-68
TAIR|locus:2039114649 CNGC12 "cyclic nucleotide-gate 0.660 0.613 0.332 2e-63
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 815 (292.0 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 181/417 (43%), Positives = 255/417 (61%)

Query:   138 FLSDVLFILPIPQVLLILAMIQRMRGTEF---SFAVKFFLF-QHVLRTIQIYRVYMKAQ- 192
             F+ D+L +LP+PQ ++IL +I  MRG+        +KF +F Q++ R I+IY +Y +   
Sbjct:   188 FIIDILAVLPLPQ-MVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTR 246

Query:   193 ---VPSRHAELALGFS-FSYIQTSNVIGALWYFFAIKSESVCWKKACI-NHDGCGDGSFY 247
                + +  A     F+ F Y+  S+V GA WY F+I+ E+VCWK+AC  N+  C     Y
Sbjct:   247 TSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLY 306

Query:   248 CDDHLED-RKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSL 306
             CD        FLN  CP    N+T+FDFGIF DA QSGVVE++DF ++ +YCF WG+Q+L
Sbjct:   307 CDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNL 366

Query:   307 SSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQ 365
             SS GQ L+TST  WE  FA+ I+  G+ L   L+G +QTY +S +  LE MR K ++ EQ
Sbjct:   367 SSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQ 426

Query:   366 WLPFRKLSQNLQQQIK-YHLHSWDETRNFNIENLVYNLPEDLGRDIXXXXXXXXXXXXXX 424
             W+  R L +NL+++I+ Y  + W ETR  + ENL+ NLP+DL RDI              
Sbjct:   427 WMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPM 486

Query:   425 FGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNT 484
             F K  + LLD LC+ ++PV++ E SYIV EG  +D+M+F+++G LLT  + G      N+
Sbjct:   487 FEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS 546

Query:   485 DNYDC-NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNV 540
             +     + CGEEL+ WA D       SSS LPIST T++AL +VEAF L ADDLK V
Sbjct:   547 EYLGAGDFCGEELLTWALDP-----HSSSNLPISTRTVRALMEVEAFALKADDLKFV 598
GO:0005216 "ion channel activity" evidence=IEA
GO:0005261 "cation channel activity" evidence=ISS
GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006811 "ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005242 "inward rectifier potassium channel activity" evidence=IGI
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IGI
GO:0006813 "potassium ion transport" evidence=IGI
GO:0006816 "calcium ion transport" evidence=IGI
TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006500001
SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (709 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 603
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.52
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.48
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.4
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.34
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.33
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.31
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.21
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.2
cd00038115 CAP_ED effector domain of the CAP family of transc 99.16
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.11
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.09
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.09
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.08
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.08
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.07
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.06
PLN02868 413 acyl-CoA thioesterase family protein 99.05
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.01
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 98.98
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 98.95
COG2905 610 Predicted signal-transduction protein containing c 98.86
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.73
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.6
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.24
PRK10537393 voltage-gated potassium channel; Provisional 98.16
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.83
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.57
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.46
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.03
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 96.26
PRK11832207 putative DNA-binding transcriptional regulator; Pr 96.13
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.72
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 95.71
PF04831153 Popeye: Popeye protein conserved region; InterPro: 95.53
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 95.0
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 94.82
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 94.34
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 94.16
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 94.0
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 92.49
PLN032231634 Polycystin cation channel protein; Provisional 82.98
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 82.48
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-87  Score=737.23  Aligned_cols=459  Identities=33%  Similarity=0.545  Sum_probs=399.4

Q ss_pred             CccceeecCCCchh---hHHHHHHHHHHHhhccceEEEEEEcCCceeEEEcCcchhHHHHHHHHHHHHHHHHHHHHhCcc
Q 007465           49 PCVKKIFDTHGSYG---NWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTG  125 (603)
Q Consensus        49 ~~~~~ii~P~s~~~---~~~~~~~~~i~~~~~p~f~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~  125 (603)
                      +..++||||.|+|+   +|+++++|++++++||+|||+|.+.....|  +|......+.++|.++|++|++||+++||||
T Consensus        64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta  141 (727)
T KOG0498|consen   64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA  141 (727)
T ss_pred             cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence            44588999999999   678889999999999999999999767777  7888888999999999999999999999999


Q ss_pred             -ccCCCc--c-ccc--------chhHHHHHhhcChhHHHHHHHHhhcccccchh--hh-HHHHHHHHHHHHHHHHHHHHH
Q 007465          126 -ISKSSR--K-RSW--------LLFLSDVLFILPIPQVLLILAMIQRMRGTEFS--FA-VKFFLFQHVLRTIQIYRVYMK  190 (603)
Q Consensus       126 -~~~~~~--V-d~k--------~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~--~~-Lr~~~~~~l~RllRi~rl~~~  190 (603)
                       +++.+.  | |||        +||++|++|++|+|+++ +|..+.  ..+...  .. ..++.++|++||.|+.++++.
T Consensus       142 yv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~-~~~~~~--~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r  218 (727)
T KOG0498|consen  142 YVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIV-VLVVIG--STSLALESTILVGILLLQRLPRLRRVIPLFAR  218 (727)
T ss_pred             EECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhhe-eeeeec--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             777554  4 886        99999999999999998 664431  011111  12 445788999999999999999


Q ss_pred             hccccc-hhhhh-HH--H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCCCcccccccccccCCC
Q 007465          191 AQVPSR-HAELA-LG--F-SFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTN  265 (603)
Q Consensus       191 ~~~~~~-~~e~~-~~--~-l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~  265 (603)
                      +++..+ ..|++ ++  + +++||+++||.||+||++|.++...||+++                     +|+...+...
T Consensus       219 ~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~l~~~~  277 (727)
T KOG0498|consen  219 LEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGSLGRLL  277 (727)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------cccccccccc
Confidence            999888 78888 55  3 888899999999999999998888888754                     3443311000


Q ss_pred             CCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465          266 NQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQT  345 (603)
Q Consensus       266 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~  345 (603)
                      +.....|+||+|            +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|+++||++||||++
T Consensus       278 ~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~  345 (727)
T KOG0498|consen  278 SCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTA  345 (727)
T ss_pred             ccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHH
Confidence            011223668765            56679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcch
Q 007465          346 YTKSGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVE  423 (603)
Q Consensus       346 il~~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~  423 (603)
                      ++|+++. .++|+.||+++++||++|+||++||+||++| ||+|+.++|+||+++|++||++||++|++|+|.++++++|
T Consensus       346 ~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vp  425 (727)
T KOG0498|consen  346 LLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVP  425 (727)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCc
Confidence            9999999 9999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             hhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhc
Q 007465          424 EFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQD  502 (603)
Q Consensus       424 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~  502 (603)
                      +|+++|++++++|+.++++.+|+|||+|++|||+.++||||.+|.+++...+||  ++.+...| +||+|||..++|++.
T Consensus       426 LF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~  503 (727)
T KOG0498|consen  426 LFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLD  503 (727)
T ss_pred             hhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999997766  44466788 999999665557763


Q ss_pred             ccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh---------ccc----------chhhhHHHHHHHHH
Q 007465          503 ACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL---------IKH----------NRAAPFIQAARFIT  559 (603)
Q Consensus       503 ~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~---------~~~----------~~~~~~i~~~~~~~  559 (603)
                      .            ++++||+|+|.|+++.|+++||+.+++         .+|          .|+++++|.+++++
T Consensus       504 ~------------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~  567 (727)
T KOG0498|consen  504 L------------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRH  567 (727)
T ss_pred             C------------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHH
Confidence            2            247899999999999999999999998         221          88999999999877

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 2e-17
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 4e-04
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 425 FGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNT 484
           F    + LLD +CE +KP +F E SY+V EG  +++M+F+++G L +  ++G  +   N 
Sbjct: 14  FENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNR 73
Query: 485 DNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNV 540
               + + CG+EL+ WA D       S S LP ST T++ALT+VEAF L+AD+LK V
Sbjct: 74  SLLKEGDFCGDELLTWALDP-----KSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query603
3ukn_A212 Novel protein similar to vertebrate potassium VOL 2e-33
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 7e-33
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 1e-31
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 3e-22
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 7e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  125 bits (317), Expect = 2e-33
 Identities = 32/187 (17%), Positives = 72/187 (38%), Gaps = 19/187 (10%)

Query: 356 MRQKEKELEQWLPFRKLSQNLQQQIK-YHLHSWDETRNFNIENLVYNLPEDLGRDIKSEL 414
              + K+L+ ++   +L + L Q++      +W      ++  L+ + P++L  DI   L
Sbjct: 14  YHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHL 73

Query: 415 CLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS 474
             ELL+ +  F    +  L  L   +K        +++ +G ++  + FV  G++     
Sbjct: 74  NKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD 132

Query: 475 EGITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMA 534
             + A          ++ G + +   Q               +   ++ALT  +   +  
Sbjct: 133 NTVLAIL-----GKGDLIGSDSLTKEQV------------IKTNANVKALTYCDLQYISL 175

Query: 535 DDLKNVL 541
             L+ VL
Sbjct: 176 KGLREVL 182
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query603
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.98
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.97
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.97
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.83
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.75
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.75
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.72
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.66
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.65
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.64
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.62
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.61
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.61
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.61
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.6
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.6
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.59
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.59
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.59
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.59
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.59
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.59
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.58
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.56
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.56
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.54
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.54
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.53
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.53
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.53
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.52
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.52
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.52
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.51
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.49
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.49
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.46
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.46
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.44
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.44
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.43
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.43
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.4
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.4
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.38
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.37
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.34
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.33
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.32
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.32
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.28
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.28
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.28
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.22
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.2
2q67_A114 Potassium channel protein; inverted teepee, helix 99.19
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.17
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.15
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.14
3b02_A195 Transcriptional regulator, CRP family; structural 99.14
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.1
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.09
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.02
3rvy_A285 ION transport protein; tetrameric ION channel, vol 98.88
3um7_A309 Potassium channel subfamily K member 4; potassium 98.85
1xl4_A301 Inward rectifier potassium channel; integral membr 98.85
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.71
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.68
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.56
3um7_A309 Potassium channel subfamily K member 4; potassium 98.54
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.52
3sya_A340 G protein-activated inward rectifier potassium CH; 98.44
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.43
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.37
1lnq_A336 MTHK channels, potassium channel related protein; 98.31
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.43
1ors_C132 Potassium channel; voltage-dependent, voltage sens 96.39
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 95.76
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=99.98  E-value=5.7e-33  Score=293.25  Aligned_cols=187  Identities=19%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccCcc
Q 007465          292 KRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRK  371 (603)
Q Consensus       292 ~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~i~~~m~~~~  371 (603)
                      +..|..|+||+++||||+||||++|.|..|+++++++|++|.+++|+.+|.+++.+++..     ++             
T Consensus       159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~-----~~-------------  220 (355)
T 3beh_A          159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV-----RR-------------  220 (355)
T ss_dssp             HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-------------
T ss_pred             cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-------------
Confidence            445888999999999999999999999999999999999999999999999987654211     10             


Q ss_pred             CCHHHHHHHHHhHhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEE
Q 007465          372 LSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYI  451 (603)
Q Consensus       372 lp~~L~~rvr~y~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I  451 (603)
                               +++.                             .+.+.++++|+|++++++.+++++..++++.|+|||.|
T Consensus       221 ---------~~~~-----------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I  262 (355)
T 3beh_A          221 ---------GDFV-----------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVI  262 (355)
T ss_dssp             ---------HHHH-----------------------------HHHC----------------------------------
T ss_pred             ---------Hhhc-----------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEE
Confidence                     0110                             02356888999999999999999999999999999999


Q ss_pred             EeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEE
Q 007465          452 VPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAF  530 (603)
Q Consensus       452 ~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~  530 (603)
                      +++||.++++|||.+|.++++..+   +     ..+ +|++|||.+++   .+     .      +++++++|.++|+++
T Consensus       263 ~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~-----~------~~~~~~~A~~~~~l~  320 (355)
T 3beh_A          263 CRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SG-----E------PRSATVSAATTVSLL  320 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CC-----C------CcceEEEECccEEEE
Confidence            999999999999999999999754   2     467 99999999873   33     1      477899999999999


Q ss_pred             EeCHHhHHHHHhcccchhhhHHHHHH
Q 007465          531 ILMADDLKNVLLIKHNRAAPFIQAAR  556 (603)
Q Consensus       531 ~L~~~df~~ll~~~~~~~~~~i~~~~  556 (603)
                      .+++++|.++++..+.+.+.+.+.+.
T Consensus       321 ~i~~~~f~~ll~~~p~~~~~l~~~l~  346 (355)
T 3beh_A          321 SLHSADFQMLCSSSPEIAEIFRKTAL  346 (355)
T ss_dssp             --------------------------
T ss_pred             EEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999865555555554443
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 603
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 3e-09
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 2e-08
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 2e-04
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 417 ELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTY-NSE 475
             +++V  F    + LLD +CE +KP +F E SY+V EG  +++M+F+++G L +     
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 476 GITAAPPNTDNYDCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMAD 535
           G +     +   + + CG+EL+ WA D       S S LP ST T++ALT+VEAF L+AD
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPK-----SGSNLPSSTRTVKALTEVEAFALIAD 120

Query: 536 DLKNVL 541
           +LK V 
Sbjct: 121 ELKFVA 126
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query603
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.96
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.78
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.66
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.66
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.66
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.64
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.63
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.62
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.61
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.56
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.45
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.41
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.38
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.37
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.33
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.32
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.29
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.26
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.15
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.14
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.92
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 97.15
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 95.95
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 84.48
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 80.64
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.6e-29  Score=237.59  Aligned_cols=185  Identities=22%  Similarity=0.286  Sum_probs=165.7

Q ss_pred             cH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhc
Q 007465          351 SI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKW  428 (603)
Q Consensus       351 ~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~l  428 (603)
                      |+ +.+|+++|+.+++||+.+++|++|+.||++| +|.|+ +++.+++++++.||++|+.++..+++.++|+++|+|+++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~   79 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA   79 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence            45 8899999999999999999999999999999 99996 477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcC
Q 007465          429 RKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRT  507 (603)
Q Consensus       429 s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~  507 (603)
                      ++.++..|+..+++..|.||++|+++||.++.+|||.+|.|+++..++ +.     ..+ +|++|||.+++   .+    
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~~-----~~l~~G~~fGe~~~~---~~----  146 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KE-----MKLSDGSYFGEICLL---TR----  146 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-CE-----EEECTTCEECHHHHH---HC----
T ss_pred             hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-ce-----eeeccceeeeeeecc---CC----
Confidence            999999999999999999999999999999999999999999987433 33     567 99999999884   33    


Q ss_pred             CCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHH
Q 007465          508 DSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAAR  556 (603)
Q Consensus       508 ~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~  556 (603)
                       .      +++++++|.++|+++.|++++|.++++..+...+.+.+.+.
T Consensus       147 -~------~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~  188 (193)
T d1q3ea_         147 -G------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAI  188 (193)
T ss_dssp             -S------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred             -C------cccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence             1      47889999999999999999999999955556665655544
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure