Citrus Sinensis ID: 007482

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
ccccccccccccEEEcccccHHHHHHHHccccEEEEEEcccccccEEEEcccEEEcccccccHHHHHHHcccccEEEEccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccEEcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHcccccccEEHHHHHHcccccHHHHHHHHHEEEccccccccccccccEEEccccccHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHEEEccccccEEEcccccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccEEEccccEEEEccccccHHHHHHHcccEEEEEEEEcccccEEEEEEcccEEEccccccHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHcccEEEcccccccEccccEEEcccccHHHHHHHccccccccEEEEEccccHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEcccccEEcccccHHHHHHHHHHHcccEccccHHHHHHHHHHHHHHHHHcccEEcccccccccccccHHHHHHHccccccccEEEEccccccccHHHccccHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccHHEEEcc
matgqlfsKTTQALFYNYKQLPIQRMLDFDFLCVagiinpgaegfqklffgqeeiaipvhSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSnnkvvigpatvggiqagafkigdtagtidniihcklyrpgsvgfvsksggmsnELYNTIARVTDGIYegiaiggdvfpgstlsdhilrfnnipQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLfksevqfghagaksggemESAQAKNQALRdagavvptsYEAFESAIKETFEKLVeegkippvkevtppqipedlntaiksgkvrapthiistisddrgeepcyagvpmssiveqgygvgdvISLLWFKRSLPRYCTQFIEICIMLCadhgpcvsgahntiVTARAGKDLVSSLVSGLltigprfggaiDDAARYFKDAYDRGLSAYEFVESMKkkgirvpgighrikrgdnRDKRVELLQKFARthfpsvkymEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLagsgmfskqEIDEIVEIGYLNGLFVLARSIglightfdqkrlkqplyrhpwedvlytk
matgqlfsktTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAlkqgkvnkpVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEgkippvkevtppqipEDLNtaiksgkvrapthiistisddrgeePCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVEsmkkkgirvpgighrikrgdnrdkRVELLQKfarthfpsvkyMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTfdqkrlkqplyrhpwedvlytk
MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFssfrsaaassmaaLKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
******FSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFG**************************V*TSYEAFESAIKETF************************************THIISTIS***GEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY**
*ATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQ**************AQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFG************************AVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
***GQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
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MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query602 2.2.26 [Sep-21-2011]
Q93VT8608 ATP-citrate synthase beta yes no 1.0 0.990 0.922 0.0
Q9FGX1608 ATP-citrate synthase beta yes no 1.0 0.990 0.925 0.0
Q9C522608 ATP-citrate synthase beta yes no 1.0 0.990 0.917 0.0
Q54YA0622 Probable ATP-citrate synt yes no 0.990 0.958 0.641 0.0
Q9P7W3615 Probable ATP-citrate synt yes no 0.990 0.969 0.548 0.0
P166381100 ATP-citrate synthase OS=R yes no 0.993 0.543 0.530 0.0
Q91V921091 ATP-citrate synthase OS=M yes no 0.993 0.548 0.530 0.0
P533961101 ATP-citrate synthase OS=H yes no 0.988 0.540 0.528 0.0
Q2TCH31101 ATP-citrate synthase OS=O N/A no 0.993 0.543 0.525 0.0
Q32PF21091 ATP-citrate synthase OS=B yes no 0.993 0.548 0.523 0.0
>sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/608 (92%), Positives = 586/608 (96%), Gaps = 6/608 (0%)

Query: 1   MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPGAEGFQKLFFGQEE 54
           MATGQ+FSKTTQALFYNYKQLPIQRMLDFDFLC      VAGIINPG++GFQKLFFGQEE
Sbjct: 1   MATGQIFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSDGFQKLFFGQEE 60

Query: 55  IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 114
           IAIPVH T+EAAC AHP ADVFINF+SFRSAAASSM+ALKQPTIRVVAIIAEGVPE+DTK
Sbjct: 61  IAIPVHPTIEAACNAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDTK 120

Query: 115 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 174
           QLI+YAR+NNKV+IGPATVGGIQAGAFKIGDTAGTIDNII CKLYRPGSVGFVSKSGGMS
Sbjct: 121 QLISYARANNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMS 180

Query: 175 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 234
           NE+YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG+DEYSL
Sbjct: 181 NEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGKDEYSL 240

Query: 235 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 294
           VEALKQGKV KPVVAWVSGTCARLFKSEVQFGHAGAKSGGE+ESAQAKNQAL+DAGAVVP
Sbjct: 241 VEALKQGKVQKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALKDAGAVVP 300

Query: 295 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 354
           TSYEA E+AIKETFEKLVE+GKI PV E+TPP IPEDL TAIKSGKVRAPTHIISTISDD
Sbjct: 301 TSYEALETAIKETFEKLVEDGKISPVTEITPPPIPEDLKTAIKSGKVRAPTHIISTISDD 360

Query: 355 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 414
           RGEEPCYAGVPMS+I+EQGYGVGDVISLLWFKRSLPRYCTQFIE+CIMLCADHGPCVSGA
Sbjct: 361 RGEEPCYAGVPMSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCVSGA 420

Query: 415 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 474
           HN+IVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDR L+ YEFVE MKKKG
Sbjct: 421 HNSIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVEGMKKKG 480

Query: 475 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 534
           IRVPGIGHRIK  DNRDKRV+LLQK+A THFPSVKYMEYAVQVETYTLSKANNLVLNVDG
Sbjct: 481 IRVPGIGHRIKSRDNRDKRVQLLQKYAHTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540

Query: 535 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 594
           AIGSLFLDLL+GSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct: 541 AIGSLFLDLLSGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query: 595 WEDVLYTK 602
           WEDVLYTK
Sbjct: 601 WEDVLYTK 608
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|Q9FGX1|ACLB2_ARATH ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana GN=ACLB-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C522|ACLB1_ARATH ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana GN=ACLB-1 PE=2 SV=1 Back     alignment and function description
>sp|Q54YA0|ACLY_DICDI Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly PE=1 SV=1 Back     alignment and function description
>sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.07 PE=1 SV=1 Back     alignment and function description
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description
>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
225431960608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.990 0.947 0.0
224101561608 predicted protein [Populus trichocarpa] 1.0 0.990 0.947 0.0
356529147608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.990 0.940 0.0
449462152608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.990 0.940 0.0
148872938608 ATP citrate lyase alpha subunit [Glycyrr 1.0 0.990 0.939 0.0
356556001608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.990 0.935 0.0
449524892609 PREDICTED: LOW QUALITY PROTEIN: ATP-citr 1.0 0.988 0.939 0.0
115436118608 Os01g0300200 [Oryza sativa Japonica Grou 1.0 0.990 0.922 0.0
449452925608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.990 0.922 0.0
224285717608 unknown [Picea sitchensis] 1.0 0.990 0.904 0.0
>gi|225431960|ref|XP_002278181.1| PREDICTED: ATP-citrate synthase beta chain protein 2 [Vitis vinifera] gi|296083242|emb|CBI22878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1164 bits (3011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/608 (94%), Positives = 592/608 (97%), Gaps = 6/608 (0%)

Query: 1   MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPGAEGFQKLFFGQEE 54
           MATGQLFS+TTQALFYNYKQLPIQRMLDFDFLC      VAGIINPG+EGFQKLFFGQEE
Sbjct: 1   MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEE 60

Query: 55  IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 114
           IAIPVHS++EAA AAHP ADVFINF+SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK
Sbjct: 61  IAIPVHSSIEAASAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 120

Query: 115 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 174
           QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII  KLYRPGSVGFVSKSGGMS
Sbjct: 121 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQSKLYRPGSVGFVSKSGGMS 180

Query: 175 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 234
           NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDH+LRFNNIPQVKM+VVLGELGGRDEYSL
Sbjct: 181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMVVVLGELGGRDEYSL 240

Query: 235 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 294
           VEALKQGK+NKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAL +AGAVVP
Sbjct: 241 VEALKQGKINKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALSEAGAVVP 300

Query: 295 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 354
           TSYEAFE+AIKETFEKL EEGKI PVKEV PPQIPEDLNTAIKSGKVRAPTHIISTISDD
Sbjct: 301 TSYEAFETAIKETFEKLHEEGKITPVKEVAPPQIPEDLNTAIKSGKVRAPTHIISTISDD 360

Query: 355 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 414
           RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT FIEICIMLCADHGPCVSGA
Sbjct: 361 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTHFIEICIMLCADHGPCVSGA 420

Query: 415 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 474
           HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGL+AYEFVE MKKKG
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTAYEFVEDMKKKG 480

Query: 475 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 534
           IRVPGIGHRIKRGDNRDKRVELLQ+FARTHFPSVKYMEYAV+VETYTLSK+NNLVLNVDG
Sbjct: 481 IRVPGIGHRIKRGDNRDKRVELLQRFARTHFPSVKYMEYAVEVETYTLSKSNNLVLNVDG 540

Query: 535 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 594
           AIGSLFLDLLAGSGMF+KQEIDEIV+IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct: 541 AIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query: 595 WEDVLYTK 602
           WEDVLYTK
Sbjct: 601 WEDVLYTK 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101561|ref|XP_002312331.1| predicted protein [Populus trichocarpa] gi|222852151|gb|EEE89698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529147|ref|XP_003533158.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449462152|ref|XP_004148805.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|148872938|gb|ABR15094.1| ATP citrate lyase alpha subunit [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|356556001|ref|XP_003546316.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449524892|ref|XP_004169455.1| PREDICTED: LOW QUALITY PROTEIN: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|115436118|ref|NP_001042817.1| Os01g0300200 [Oryza sativa Japonica Group] gi|75249275|sp|Q93VT8.1|ACLB1_ORYSJ RecName: Full=ATP-citrate synthase beta chain protein 1; Short=ATP-citrate synthase B-1; AltName: Full=ATP-citrate lyase B-1; AltName: Full=Citrate cleavage enzyme B-1 gi|14495217|dbj|BAB60936.1| putative ATP citrate lyase a-subunit [Oryza sativa Japonica Group] gi|15623805|dbj|BAB67865.1| putative ATP citrate lyase a-subunit [Oryza sativa Japonica Group] gi|113532348|dbj|BAF04731.1| Os01g0300200 [Oryza sativa Japonica Group] gi|125525538|gb|EAY73652.1| hypothetical protein OsI_01541 [Oryza sativa Indica Group] gi|125570053|gb|EAZ11568.1| hypothetical protein OsJ_01435 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449452925|ref|XP_004144209.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] gi|449530217|ref|XP_004172092.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224285717|gb|ACN40574.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
TAIR|locus:2158009608 ACLB-2 "ATP citrate lyase subu 1.0 0.990 0.906 4.9e-298
TAIR|locus:2084284608 ACLB-1 "ATP-citrate lyase B-1" 1.0 0.990 0.898 4e-296
DICTYBASE|DDB_G0278345622 acly "ATP citrate synthase" [D 0.990 0.958 0.630 1.1e-206
POMBASE|SPBC1703.07615 SPBC1703.07 "ATP citrate synth 0.990 0.969 0.537 2e-175
ASPGD|ASPL0000051301655 aclB [Emericella nidulans (tax 0.988 0.908 0.516 4.4e-171
MGI|MGI:1032511091 Acly "ATP citrate lyase" [Mus 0.988 0.545 0.523 7.2e-171
RGD|20181100 Acly "ATP citrate lyase" [Ratt 0.988 0.540 0.523 9.1e-171
UNIPROTKB|F1LQS41100 Acly "ATP-citrate synthase" [R 0.988 0.540 0.523 9.1e-171
UNIPROTKB|G3V8881101 Acly "ATP citrate lyase, isofo 0.988 0.540 0.523 9.1e-171
UNIPROTKB|G3V9G41091 Acly "ATP citrate lyase, isofo 0.988 0.545 0.523 9.1e-171
TAIR|locus:2158009 ACLB-2 "ATP citrate lyase subunit B 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2861 (1012.2 bits), Expect = 4.9e-298, P = 4.9e-298
 Identities = 551/608 (90%), Positives = 575/608 (94%)

Query:     1 MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPGAEGFQKLFFGQEE 54
             MATGQLFS+TTQALFYNYKQLP+QRMLDFDFLC      VAGIINPG+EGFQKLFFGQEE
Sbjct:     1 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEE 60

Query:    55 IAIPVHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTK 114
             IAIPVH+ +EAACAAHP ADVFINF             LKQPTI+VVAIIAEGVPE+DTK
Sbjct:    61 IAIPVHAAIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIKVVAIIAEGVPESDTK 120

Query:   115 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 174
             QLIAYAR+NNKVVIGPATVGGIQAGAFKIGDTAGTIDNII CKLYRPGSVGFVSKSGGMS
Sbjct:   121 QLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMS 180

Query:   175 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 234
             NE+YNT+ARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ+KMMVVLGELGGRDEYSL
Sbjct:   181 NEMYNTVARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQIKMMVVLGELGGRDEYSL 240

Query:   235 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 294
             VEALK+GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAL DAGA+VP
Sbjct:   241 VEALKEGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALIDAGAIVP 300

Query:   295 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 354
             TS+EA ESAIKETFEKLVEEGK+ P+KEV PPQIPEDLN+AIKSGKVRAPTHIISTISDD
Sbjct:   301 TSFEALESAIKETFEKLVEEGKVSPIKEVIPPQIPEDLNSAIKSGKVRAPTHIISTISDD 360

Query:   355 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 414
             RGEEPCYAGVPMSSI+EQGYGVGDVISLLWFKRSLPRYCT+FIEICIMLCADHGPCVSGA
Sbjct:   361 RGEEPCYAGVPMSSIIEQGYGVGDVISLLWFKRSLPRYCTKFIEICIMLCADHGPCVSGA 420

Query:   415 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 474
             HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDA DR L+ YEFVE MKKKG
Sbjct:   421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDACDRNLTPYEFVEGMKKKG 480

Query:   475 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 534
             IRVPGIGHRIK  DNRDKRVELLQKFAR++FPSVKYMEYAV VETYTLSKANNLVLNVDG
Sbjct:   481 IRVPGIGHRIKSRDNRDKRVELLQKFARSNFPSVKYMEYAVTVETYTLSKANNLVLNVDG 540

Query:   535 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 594
             AIGSLFLDLLAGSGMF+KQEIDEIV+IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct:   541 AIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query:   595 WEDVLYTK 602
             WEDVLYTK
Sbjct:   601 WEDVLYTK 608
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=IEA;IDA
GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006085 "acetyl-CoA biosynthetic process" evidence=RCA;TAS
GO:0009346 "citrate lyase complex" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2084284 ACLB-1 "ATP-citrate lyase B-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278345 acly "ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC1703.07 SPBC1703.07 "ATP citrate synthase subunit 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051301 aclB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2018 Acly "ATP citrate lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQS4 Acly "ATP-citrate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V888 Acly "ATP citrate lyase, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C522ACLB1_ARATH2, ., 3, ., 3, ., 80.91771.00.9901yesno
Q8X097ACL1_NEUCR2, ., 3, ., 3, ., 80.52150.98830.8880N/Ano
Q93VT8ACLB1_ORYSJ2, ., 3, ., 3, ., 80.92261.00.9901yesno
Q9FGX1ACLB2_ARATH2, ., 3, ., 3, ., 80.92591.00.9901yesno
Q9P7W3ACL1_SCHPO2, ., 3, ., 3, ., 80.54890.99000.9691yesno
Q54YA0ACLY_DICDI2, ., 3, ., 3, ., 80.64170.99000.9581yesno
O93988ACL1_SORMK2, ., 3, ., 3, ., 80.52490.98830.8827N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.30.921
3rd Layer2.3.3.80.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033143001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (608 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002749001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (423 aa)
•••• •• 0.929
GSVIVG00022538001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (423 aa)
•••• •• 0.925
GSVIVG00027787001
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (347 aa)
     •  0.908
GSVIVG00020972001
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (298 aa)
     •  0.906
MDH
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (352 aa)
     •  0.905
GSVIVG00015269001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1612 aa)
     •• 0.904
GSVIVG00028595001
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
     •• 0.902
GSVIVG00028594001
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
     •• 0.902
GSVIVG00019169001
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
     •• 0.901
GSVIVG00031806001
SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (428 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
PLN02522608 PLN02522, PLN02522, ATP citrate (pro-S)-lyase 0.0
cd06100227 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C- 2e-86
COG0074293 COG0074, SucD, Succinyl-CoA synthetase, alpha subu 4e-62
COG0372390 COG0372, GltA, Citrate synthase [Energy production 2e-36
PTZ00187317 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha 2e-31
PRK05678291 PRK05678, PRK05678, succinyl-CoA synthetase subuni 3e-31
TIGR01019286 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a 2e-28
PLN00125300 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi 8e-26
PRK06224263 PRK06224, PRK06224, citrate synthase; Provisional 3e-20
pfam00549128 pfam00549, Ligase_CoA, CoA-ligase 6e-20
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 5e-19
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 2e-17
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 5e-13
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 1e-12
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 1e-10
PLN02456455 PLN02456, PLN02456, citrate synthase 5e-08
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 2e-05
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 2e-04
COG1042598 COG1042, COG1042, Acyl-CoA synthetase (NDP forming 2e-04
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 0.002
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score = 1275 bits (3300), Expect = 0.0
 Identities = 560/608 (92%), Positives = 589/608 (96%), Gaps = 6/608 (0%)

Query: 1   MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPGAEGFQKLFFGQEE 54
           MATGQLFS+TTQALFYNYKQLP+QRMLDFDFLC      VAGIINPG+EGFQKLFFGQEE
Sbjct: 1   MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEE 60

Query: 55  IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 114
           IAIPVH ++EAAC AHP ADVFINF+SFRSAAASSM ALKQPTIRVVAIIAEGVPE+DTK
Sbjct: 61  IAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTK 120

Query: 115 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 174
           QLIAYAR+NNKVVIGPATVGGIQAGAFKIGDTAGT+DNII CKLYRPGSVGFVSKSGGMS
Sbjct: 121 QLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSKSGGMS 180

Query: 175 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 234
           NE+YN IARVTDGIYEGIAIGGDVFPGSTLSDH+LRFNNIPQ+KM+VVLGELGGRDEYSL
Sbjct: 181 NEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL 240

Query: 235 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 294
           VEALKQGKV+KPVVAWVSGTCARLFKSEVQFGHAGAKSGG+MESAQAKN+AL+DAGA+VP
Sbjct: 241 VEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVP 300

Query: 295 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 354
           TS+EA E+AIKETFEKLVEEGKI PVKEVTPPQIPEDLN+AIKSGKVRAPTHI+STISDD
Sbjct: 301 TSFEALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDD 360

Query: 355 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 414
           RGEEPCYAGVPMSSI+E+ YGVGDVISLLWFKRSLPRYCT+FIE+CIMLCADHGPCVSGA
Sbjct: 361 RGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVSGA 420

Query: 415 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 474
           HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGL+ YEFVE MKKKG
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG 480

Query: 475 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 534
           IRVPGIGHRIK  DNRDKRVELLQK+ARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG
Sbjct: 481 IRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540

Query: 535 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 594
           AIGSLFLDLLAGSGMF+KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct: 541 AIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query: 595 WEDVLYTK 602
           WEDVLYTK
Sbjct: 601 WEDVLYTK 608

Length = 608
>gnl|CDD|99854 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>gnl|CDD|235748 PRK06224, PRK06224, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 602
PLN02522608 ATP citrate (pro-S)-lyase 100.0
KOG1254600 consensus ATP-citrate lyase [Energy production and 100.0
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 100.0
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 100.0
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 100.0
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 100.0
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 100.0
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
PRK06224263 citrate synthase; Provisional 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
PRK14035371 citrate synthase; Provisional 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
PRK14036377 citrate synthase; Provisional 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
PRK14034372 citrate synthase; Provisional 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
PRK14037377 citrate synthase; Provisional 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
PLN02456455 citrate synthase 100.0
PRK14033375 citrate synthase; Provisional 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
PRK14032447 citrate synthase; Provisional 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
KOG1255329 consensus Succinyl-CoA synthetase, alpha subunit [ 100.0
PRK06091555 membrane protein FdrA; Validated 100.0
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 100.0
KOG2617458 consensus Citrate synthase [Energy production and 100.0
PF13380116 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 99.76
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 98.91
COG1832140 Predicted CoA-binding protein [General function pr 98.83
PF0262996 CoA_binding: CoA binding domain; InterPro: IPR0037 98.72
PF01113124 DapB_N: Dihydrodipicolinate reductase, N-terminus; 98.09
TIGR00036266 dapB dihydrodipicolinate reductase. 97.94
COG0289266 DapB Dihydrodipicolinate reductase [Amino acid tra 97.75
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 97.68
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 97.52
PRK00048257 dihydrodipicolinate reductase; Provisional 97.5
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 97.48
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 97.27
PLN02775286 Probable dihydrodipicolinate reductase 97.27
PRK14046392 malate--CoA ligase subunit beta; Provisional 97.26
PRK13303265 L-aspartate dehydrogenase; Provisional 97.01
TIGR02130275 dapB_plant dihydrodipicolinate reductase. This nar 96.96
PRK12349 369 citrate synthase 3; Provisional 96.95
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 96.75
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 96.73
PRK13304265 L-aspartate dehydrogenase; Reviewed 96.63
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 96.59
PRK13302271 putative L-aspartate dehydrogenase; Provisional 96.59
PF03446163 NAD_binding_2: NAD binding domain of 6-phosphogluc 96.43
PRK14037 377 citrate synthase; Provisional 96.43
PRK14036 377 citrate synthase; Provisional 96.42
cd06112 373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 96.41
TIGR01800 368 cit_synth_II 2-methylcitrate synthase/citrate synt 96.26
COG0673342 MviM Predicted dehydrogenases and related proteins 96.11
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 96.08
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 96.04
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 96.02
PRK11579346 putative oxidoreductase; Provisional 95.97
TIGR01761343 thiaz-red thiazolinyl imide reductase. This reduct 95.93
PRK12351 378 methylcitrate synthase; Provisional 95.91
cd06115 410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 95.75
cd06113 406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 95.74
cd06117 366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 95.73
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 95.69
PRK14033 375 citrate synthase; Provisional 95.68
cd06116 384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 95.58
COG2084286 MmsB 3-hydroxyisobutyrate dehydrogenase and relate 95.5
PRK14035 371 citrate synthase; Provisional 95.44
PRK10206344 putative oxidoreductase; Provisional 95.38
PRK14034 372 citrate synthase; Provisional 95.37
cd06107 382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 95.3
TIGR01798 412 cit_synth_I citrate synthase I (hexameric type). T 95.25
TIGR03855229 NAD_NadX aspartate dehydrogenase. Members of this 95.22
COG2344211 AT-rich DNA-binding protein [General function pred 95.21
PRK14032 447 citrate synthase; Provisional 95.13
PRK12490299 6-phosphogluconate dehydrogenase-like protein; Rev 95.09
cd06105 427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 95.09
PRK09569 437 type I citrate synthase; Reviewed 94.89
PRK09599301 6-phosphogluconate dehydrogenase-like protein; Rev 94.89
PLN02350493 phosphogluconate dehydrogenase (decarboxylating) 94.74
PLN02456 455 citrate synthase 94.74
PRK05479330 ketol-acid reductoisomerase; Provisional 94.63
PLN02235423 ATP citrate (pro-S)-lyase 94.46
PTZ00142470 6-phosphogluconate dehydrogenase; Provisional 94.41
PRK05614 419 gltA type II citrate synthase; Reviewed 94.37
PRK15059292 tartronate semialdehyde reductase; Provisional 94.34
PRK05472213 redox-sensing transcriptional repressor Rex; Provi 94.27
cd06114 400 EcCS_like Escherichia coli (Ec) citrate synthase ( 94.26
cd06103 426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 94.21
COG0059338 IlvC Ketol-acid reductoisomerase [Amino acid trans 94.1
PRK06091555 membrane protein FdrA; Validated 94.06
TIGR00872298 gnd_rel 6-phosphogluconate dehydrogenase (decarbox 93.91
cd06106 428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 93.76
TIGR01692288 HIBADH 3-hydroxyisobutyrate dehydrogenase. This en 93.67
PF07991165 IlvN: Acetohydroxy acid isomeroreductase, catalyti 93.57
TIGR01921324 DAP-DH diaminopimelate dehydrogenase. This model r 93.53
PRK13403335 ketol-acid reductoisomerase; Provisional 93.3
TIGR00873467 gnd 6-phosphogluconate dehydrogenase, decarboxylat 92.99
TIGR01505291 tartro_sem_red 2-hydroxy-3-oxopropionate reductase 92.96
COG1712255 Predicted dinucleotide-utilizing enzyme [General f 92.79
PRK13301267 putative L-aspartate dehydrogenase; Provisional 92.76
TIGR01793 427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 92.63
PRK11559296 garR tartronate semialdehyde reductase; Provisiona 92.63
TIGR00465314 ilvC ketol-acid reductoisomerase. This is the seco 92.11
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 91.84
PRK15461296 NADH-dependent gamma-hydroxybutyrate dehydrogenase 91.81
PRK14618328 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 91.7
PF02593217 dTMP_synthase: Thymidylate synthase; InterPro: IPR 91.59
PRK09287459 6-phosphogluconate dehydrogenase; Validated 91.1
PLN028191042 lysine-ketoglutarate reductase/saccharopine dehydr 90.87
PRK06349426 homoserine dehydrogenase; Provisional 90.62
PRK07634245 pyrroline-5-carboxylate reductase; Reviewed 90.28
TIGR03570201 NeuD_NnaD sugar O-acyltransferase, sialic acid O-a 88.55
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 87.67
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 87.66
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 87.11
PRK07680273 late competence protein ComER; Validated 86.97
PLN02858 1378 fructose-bisphosphate aldolase 86.93
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 86.89
PLN03139386 formate dehydrogenase; Provisional 86.74
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 86.67
KOG0409327 consensus Predicted dehydrogenase [General functio 86.49
cd07022214 S49_Sppa_36K_type Signal peptide peptidase A (SppA 86.05
PRK00094325 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr 85.87
PRK15469312 ghrA bifunctional glyoxylate/hydroxypyruvate reduc 85.48
COG0240329 GpsA Glycerol-3-phosphate dehydrogenase [Energy pr 85.05
PRK06545359 prephenate dehydrogenase; Validated 84.95
PRK12439341 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 84.82
PF1008797 DUF2325: Uncharacterized protein conserved in bact 84.6
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 84.53
PRK12350353 citrate synthase 2; Provisional 84.46
PRK07574385 formate dehydrogenase; Provisional 84.0
PLN02256304 arogenate dehydrogenase 83.92
PRK13243333 glyoxylate reductase; Reviewed 83.31
PRK08410311 2-hydroxyacid dehydrogenase; Provisional 83.23
PLN02858 1378 fructose-bisphosphate aldolase 83.05
TIGR00706207 SppA_dom signal peptide peptidase SppA, 36K type. 82.03
cd07023208 S49_Sppa_N_C Signal peptide peptidase A (SppA), a 81.89
PLN02712667 arogenate dehydrogenase 81.7
KOG2741351 consensus Dimeric dihydrodiol dehydrogenase [Carbo 81.44
PRK07679279 pyrroline-5-carboxylate reductase; Reviewed 81.01
COG1748389 LYS9 Saccharopine dehydrogenase and related protei 80.94
PTZ00345365 glycerol-3-phosphate dehydrogenase; Provisional 80.92
PRK06270341 homoserine dehydrogenase; Provisional 80.71
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 80.48
TIGR03026411 NDP-sugDHase nucleotide sugar dehydrogenase. All o 80.46
COG0111324 SerA Phosphoglycerate dehydrogenase and related de 80.32
COG0616317 SppA Periplasmic serine proteases (ClpP class) [Po 80.18
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 80.1
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-142  Score=1181.75  Aligned_cols=602  Identities=93%  Similarity=1.429  Sum_probs=574.5

Q ss_pred             CccCCCCCCCcEEEEeeCCcHHHHHHHhcCCeE------EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCcc
Q 007482            1 MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMAD   74 (602)
Q Consensus         1 ~~~~~l~~p~s~avv~g~~~~~~~~~~~~g~~~------V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vD   74 (602)
                      |.+..||+++|+++|+|...+.+|.|++|+|.+      |++++||+.++++|+|||+++.|+|+|.|++|+..++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~   80 (608)
T PLN02522          1 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD   80 (608)
T ss_pred             CcceeeecCCceeEEEcCcHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence            788999999999999999999999999999987      99999997778999999999999999999999998887899


Q ss_pred             EEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccc
Q 007482           75 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII  154 (602)
Q Consensus        75 lavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~  154 (602)
                      ..||+||++++.++++|+|.++|||.+||||+||+|.+|++|+++||++|+||+||||+|++||..+++|.+.+++++.+
T Consensus        81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~~  160 (608)
T PLN02522         81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNII  160 (608)
T ss_pred             EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCCeeEccCccccccccccccccc
Confidence            99999999999999999999899999999999999999999999999999999999999999999888864333344444


Q ss_pred             cccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHH
Q 007482          155 HCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL  234 (602)
Q Consensus       155 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f  234 (602)
                      ++..++||+||+|||||++++++++++.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+|||++++++|
T Consensus       161 ~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f  240 (608)
T PLN02522        161 QCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL  240 (608)
T ss_pred             CcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHH
Confidence            44556899999999999999999999999999999999999999778999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhHhhc
Q 007482          235 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEE  314 (602)
Q Consensus       235 ~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~  314 (602)
                      ++++++++++||||++|+|||+.++++++++|||||++|++.+|+++|+++|||+|+++++|++||+++++.++.+|+.+
T Consensus       241 ~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~  320 (608)
T PLN02522        241 VEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEE  320 (608)
T ss_pred             HHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhC
Confidence            99999988999999999999996444899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCcchHHHhhcCcccCcHHHHHHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHH
Q 007482          315 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT  394 (602)
Q Consensus       315 g~~~~~~~~~~~~~~~D~~~a~~~~Li~~~~~i~t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~  394 (602)
                      |+|++..+.++|.+|+||+||.++|++++|++|.|+||+.+++++.|||+|++|||++.++|++++++||+|++|++.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~  400 (608)
T PLN02522        321 GKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCT  400 (608)
T ss_pred             CceeecCCCCCCCCCcchHHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999964599999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCccchheeeeecCCCChHHHHHHhhccCCCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcC
Q 007482          395 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG  474 (602)
Q Consensus       395 ~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~~~~~av~agl~a~Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~  474 (602)
                      ++||++||++||||+|+||+|++|+++||++|+++||+|||+++||+||||++.|++||+++.+.+.+++++|+++++++
T Consensus       401 ~~ld~~Lvl~ADHG~~aSt~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~  480 (608)
T PLN02522        401 KFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG  480 (608)
T ss_pred             HHHHHHHHHhccCCCCccHHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCC
Confidence            99999999999999999997799999999999999999999999999999999999999999876558999999999999


Q ss_pred             CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHH
Q 007482          475 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQE  554 (602)
Q Consensus       475 ~~ipGfGH~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e  554 (602)
                      ++|||||||+|+.+++|||+++|++++++++..++++++++++|+++.+++++|+|||||++|+++++||+|.+|||++|
T Consensus       481 ~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e  560 (608)
T PLN02522        481 IRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQE  560 (608)
T ss_pred             CccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCcccc
Confidence            99999999999877889999999999999988999999999999987677799999999999999999999999999999


Q ss_pred             HHHHHhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCCCCccccC
Q 007482          555 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK  602 (602)
Q Consensus       555 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~~~i~y~~  602 (602)
                      ++|||.++.++++|+++|++||+||++||+++.||+|||+||+|+|+|
T Consensus       561 ~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~~  608 (608)
T PLN02522        561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK  608 (608)
T ss_pred             ccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccCchhhccccC
Confidence            999999999999999999999999999999999999999999999986

>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>KOG2617 consensus Citrate synthase [Energy production and conversion] Back     alignment and domain information
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>COG1832 Predicted CoA-binding protein [General function prediction only] Back     alignment and domain information
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases Back     alignment and domain information
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] Back     alignment and domain information
>TIGR00036 dapB dihydrodipicolinate reductase Back     alignment and domain information
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PRK00048 dihydrodipicolinate reductase; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>PLN02775 Probable dihydrodipicolinate reductase Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>PRK13303 L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02130 dapB_plant dihydrodipicolinate reductase Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK13304 L-aspartate dehydrogenase; Reviewed Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK13302 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK11579 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR01761 thiaz-red thiazolinyl imide reductase Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>PRK10206 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>TIGR03855 NAD_NadX aspartate dehydrogenase Back     alignment and domain information
>COG2344 AT-rich DNA-binding protein [General function prediction only] Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>PLN02350 phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>PRK05479 ketol-acid reductoisomerase; Provisional Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>PRK15059 tartronate semialdehyde reductase; Provisional Back     alignment and domain information
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase Back     alignment and domain information
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates Back     alignment and domain information
>TIGR01921 DAP-DH diaminopimelate dehydrogenase Back     alignment and domain information
>PRK13403 ketol-acid reductoisomerase; Provisional Back     alignment and domain information
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating Back     alignment and domain information
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase Back     alignment and domain information
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] Back     alignment and domain information
>PRK13301 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>PRK11559 garR tartronate semialdehyde reductase; Provisional Back     alignment and domain information
>TIGR00465 ilvC ketol-acid reductoisomerase Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional Back     alignment and domain information
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function Back     alignment and domain information
>PRK09287 6-phosphogluconate dehydrogenase; Validated Back     alignment and domain information
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PRK07680 late competence protein ComER; Validated Back     alignment and domain information
>PLN02858 fructose-bisphosphate aldolase Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>PLN03139 formate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>KOG0409 consensus Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional Back     alignment and domain information
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK06545 prephenate dehydrogenase; Validated Back     alignment and domain information
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>PRK07574 formate dehydrogenase; Provisional Back     alignment and domain information
>PLN02256 arogenate dehydrogenase Back     alignment and domain information
>PRK13243 glyoxylate reductase; Reviewed Back     alignment and domain information
>PRK08410 2-hydroxyacid dehydrogenase; Provisional Back     alignment and domain information
>PLN02858 fructose-bisphosphate aldolase Back     alignment and domain information
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type Back     alignment and domain information
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PLN02712 arogenate dehydrogenase Back     alignment and domain information
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK06270 homoserine dehydrogenase; Provisional Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase Back     alignment and domain information
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
3mwe_B335 Truncated Human Atp-Citrate Lyase With Tartrate Bou 1e-91
3pff_A829 Truncated Human Atp-Citrate Lyase With Adp And Tart 1e-89
3mwd_B334 Truncated Human Atp-Citrate Lyase With Citrate Boun 3e-87
2yv2_A297 Crystal Structure Of Succinyl-Coa Synthetase Alpha 6e-27
2nu8_A288 C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le 8e-18
2nu7_A288 C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le 2e-17
2nua_A288 C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le 3e-17
1jkj_A288 E. Coli Scs Length = 288 4e-17
1cqi_A286 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 4e-17
3ufx_A296 Thermus Aquaticus Succinyl-coa Synthetase In Comple 8e-16
1oi7_A288 The Crystal Structure Of Succinyl-Coa Synthetase Al 2e-15
2nu9_A288 C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or 1e-14
2scu_A288 A Detailed Description Of The Structure Of Succinyl 4e-14
2nu6_A288 C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le 5e-14
1euc_A311 Crystal Structure Of Dephosphorylated Pig Heart, Gt 1e-12
2fpg_A305 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 2e-12
2yv1_A294 Crystal Structure Of Succinyl-Coa Synthetase Alpha 2e-11
1eud_A311 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 1e-10
2fp4_A305 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 1e-10
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 2e-07
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 5e-06
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 2e-05
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 4e-04
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 335 Back     alignment and structure 
Iteration: 1

 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 217/330 (65%), Gaps = 7/330 (2%)
Query: 6   LFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINP-GAEGFQKLFFGQEEIAIP 58
           LFS+ T+A+ +  +   +Q MLDFD++C      VA ++ P   +  QK ++G +EI IP
Sbjct: 6   LFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIP 65
Query: 59  VHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTKQLIA 118
           V   +  A   HP  DV INF             +    IR +AIIAEG+PEA T++LI 
Sbjct: 66  VFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIK 125
Query: 119 YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY 178
            A      +IGPATVGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL 
Sbjct: 126 KADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELN 185
Query: 179 NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL 238
           N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +EY +   +
Sbjct: 186 NIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGI 245
Query: 239 KQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYE 298
           K+G++ KP+V W  GTCA +F SEVQFGHAGA +    E+A AKNQAL++AG  VP S++
Sbjct: 246 KEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFD 305
Query: 299 AFESAIKETFEKLVEEGKIPPVKEVTPPQI 328
                I+  +E LV  G I P +EV PP +
Sbjct: 306 ELGEIIQSVYEDLVANGVIVPAQEVPPPTV 335
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 334 Back     alignment and structure
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297 Back     alignment and structure
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|1JKJ|A Chain A, E. Coli Scs Length = 288 Back     alignment and structure
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286 Back     alignment and structure
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296 Back     alignment and structure
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288 Back     alignment and structure
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288 Back     alignment and structure
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288 Back     alignment and structure
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311 Back     alignment and structure
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305 Back     alignment and structure
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294 Back     alignment and structure
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311 Back     alignment and structure
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-138
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 1e-133
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 2e-37
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 2e-34
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 4e-34
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 1e-33
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 5e-32
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 1e-23
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 5e-13
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 6e-09
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 3e-06
2p2w_A367 Citrate synthase; transferase, structural genomics 4e-06
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 6e-06
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 5e-05
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 9e-05
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 9e-05
1vgm_A378 378AA long hypothetical citrate synthase; open for 1e-04
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 3e-04
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 7e-04
1iom_A377 Citrate synthase; open form, riken structural geno 7e-04
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334 Back     alignment and structure
 Score =  403 bits (1037), Expect = e-138
 Identities = 169/329 (51%), Positives = 224/329 (68%), Gaps = 7/329 (2%)

Query: 5   QLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPG-AEGFQKLFFGQEEIAI 57
            LFS+ T+A+ +  +   +Q MLDFD++C      VA ++ P   +  QK ++G +EI I
Sbjct: 5   TLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILI 64

Query: 58  PVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLI 117
           PV   +  A   HP  DV INF+S RSA  S+M  +    IR +AIIAEG+PEA T++LI
Sbjct: 65  PVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLI 124

Query: 118 AYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNEL 177
             A      +IGPATVGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL
Sbjct: 125 KKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNEL 184

Query: 178 YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEA 237
            N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +EY +   
Sbjct: 185 NNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRG 244

Query: 238 LKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSY 297
           +K+G++ KP+V W  GTCA +F SEVQFGHAGA +    E+A AKNQAL++AG  VP S+
Sbjct: 245 IKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSF 304

Query: 298 EAFESAIKETFEKLVEEGKIPPVKEVTPP 326
           +     I+  +E LV  G I P +EV PP
Sbjct: 305 DELGEIIQSVYEDLVANGVIVPAQEVPPP 333
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297 Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288 Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294 Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288 Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 100.0
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 100.0
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 100.0
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 100.0
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 100.0
1y81_A138 Conserved hypothetical protein; hyperthermophIle, 99.82
1iuk_A140 Hypothetical protein TT1466; structural genomics, 99.81
3ff4_A122 Uncharacterized protein; structural genomics, PSI- 99.79
2duw_A145 Putative COA-binding protein; ligand binding prote 99.79
2d59_A144 Hypothetical protein PH1109; COA binding, structur 99.78
3ijp_A288 DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, 98.17
4f3y_A272 DHPR, dihydrodipicolinate reductase; structural ge 97.93
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 97.72
1dih_A273 Dihydrodipicolinate reductase; oxidoreductase; HET 97.69
2csu_A457 457AA long hypothetical protein; structural genomi 97.66
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 97.47
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 97.37
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 97.11
3qy9_A243 DHPR, dihydrodipicolinate reductase; rossmann fold 97.07
4ew6_A330 D-galactose-1-dehydrogenase protein; nysgrc, PSI-b 97.06
3q2i_A354 Dehydrogenase; rossmann fold, UDP-sugar binding, N 97.04
2dc1_A236 L-aspartate dehydrogenase; NAD, oxidoreductase; HE 96.98
1p9l_A245 Dihydrodipicolinate reductase; oxidoreductase, lys 96.97
3db2_A354 Putative NADPH-dependent oxidoreductase; two domai 96.95
3evn_A329 Oxidoreductase, GFO/IDH/MOCA family; structural ge 96.89
3c1a_A315 Putative oxidoreductase; ZP_00056571.1, oxidoreduc 96.88
3o9z_A312 Lipopolysaccaride biosynthesis protein WBPB; oxido 96.83
1lc0_A294 Biliverdin reductase A; oxidoreductase, tetrapyrro 96.76
3kux_A352 Putative oxidoreductase; oxidoreductase family, cs 96.75
2p2s_A336 Putative oxidoreductase; YP_050235.1, structural g 96.74
3oa2_A318 WBPB; oxidoreductase, sugar biosynthesis, dehydrog 96.71
3e18_A359 Oxidoreductase; dehydrogenase, NAD-binding, struct 96.67
3i23_A349 Oxidoreductase, GFO/IDH/MOCA family; structural ge 96.65
3rc1_A350 Sugar 3-ketoreductase; sugar biosynthesis, TDP bin 96.64
3fhl_A362 Putative oxidoreductase; NAD-binding domain, PSI-2 96.62
3u3x_A361 Oxidoreductase; structural genomics, PSI-biology, 96.62
4hkt_A331 Inositol 2-dehydrogenase; structural genomics, nys 96.61
3moi_A387 Probable dehydrogenase; structural genomics, PSI2, 96.6
3euw_A344 MYO-inositol dehydrogenase; protein structure init 96.6
3e9m_A330 Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, 96.59
4gmf_A372 Yersiniabactin biosynthetic protein YBTU; rossmann 96.56
3m2t_A359 Probable dehydrogenase; PSI, SGXNY, structural gen 96.47
1zh8_A340 Oxidoreductase; TM0312, structural genomics, JO ce 96.47
2g0t_A350 Conserved hypothetical protein; structural genomic 96.45
3ec7_A357 Putative dehydrogenase; alpha-beta, structural gen 96.45
3e82_A364 Putative oxidoreductase; NAD, GFO/IDH/MOCA family, 96.43
4fb5_A393 Probable oxidoreductase protein; PSI-biology, nysg 96.4
1f06_A320 MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH 96.39
1tlt_A319 Putative oxidoreductase (virulence factor MVIM HO; 96.37
3ezy_A344 Dehydrogenase; structural genomics, unknown functi 96.3
3uuw_A308 Putative oxidoreductase with NAD(P)-binding rossm 96.28
3btv_A438 Galactose/lactose metabolism regulatory protein GA 96.26
3f4l_A345 Putative oxidoreductase YHHX; structural genomics, 96.25
3mz0_A344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 96.2
3gdo_A358 Uncharacterized oxidoreductase YVAA; structural ge 96.18
2glx_A332 1,5-anhydro-D-fructose reductase; NADP(H) dependen 96.15
3cea_A346 MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore 96.12
1ydw_A362 AX110P-like protein; structural genomics, protein 96.12
3keo_A212 Redox-sensing transcriptional repressor REX; DNA b 96.11
3dty_A398 Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram 96.1
3ohs_X334 Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d 96.03
4gqa_A412 NAD binding oxidoreductase; structural genomics, P 96.0
2ho3_A325 Oxidoreductase, GFO/IDH/MOCA family; streptococcus 95.99
1h6d_A433 Precursor form of glucose-fructose oxidoreductase; 95.92
3v5n_A417 Oxidoreductase; structural genomics, PSI-biology, 95.85
4had_A350 Probable oxidoreductase protein; structural genomi 95.81
2nvw_A479 Galactose/lactose metabolism regulatory protein GA 95.75
3l6d_A306 Putative oxidoreductase; structural genomics, prot 95.7
1j5p_A253 Aspartate dehydrogenase; TM1643, structural genomi 95.67
4dll_A320 2-hydroxy-3-oxopropionate reductase; structural ge 95.59
3bio_A304 Oxidoreductase, GFO/IDH/MOCA family; structural ge 95.56
4e21_A358 6-phosphogluconate dehydrogenase (decarboxylating; 95.54
4gbj_A297 6-phosphogluconate dehydrogenase NAD-binding; stru 95.43
3qha_A296 Putative oxidoreductase; seattle structural genomi 95.41
1yb4_A295 Tartronic semialdehyde reductase; structural genom 95.4
3obb_A300 Probable 3-hydroxyisobutyrate dehydrogenase; struc 95.24
3pef_A287 6-phosphogluconate dehydrogenase, NAD-binding; gam 95.18
3ip3_A337 Oxidoreductase, putative; structural genomics, PSI 95.18
3pdu_A287 3-hydroxyisobutyrate dehydrogenase family protein; 95.16
3doj_A310 AT3G25530, dehydrogenase-like protein; gamma-hydro 95.07
2ixa_A444 Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver 95.01
2zyd_A480 6-phosphogluconate dehydrogenase, decarboxylating; 94.96
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 94.75
2vt3_A215 REX, redox-sensing transcriptional repressor REX; 94.64
2h12_A 436 Citrate synthase; acidophIle, acetic acid resistan 94.56
2h78_A302 Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 94.56
3nkl_A141 UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo 94.46
2p4q_A497 6-phosphogluconate dehydrogenase, decarboxylating; 94.26
3abi_A365 Putative uncharacterized protein PH1688; L-lysine 94.14
3qsg_A312 NAD-binding phosphogluconate dehydrogenase-like P; 94.03
2gf2_A296 Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct 94.0
2iz1_A474 6-phosphogluconate dehydrogenase, decarboxylating; 93.86
1vgp_A 373 373AA long hypothetical citrate synthase; open for 93.84
2dt5_A211 AT-rich DNA-binding protein; REX, NADH, NAD, rossm 93.79
2p2w_A367 Citrate synthase; transferase, structural genomics 93.74
1iom_A 377 Citrate synthase; open form, riken structural geno 93.73
2uyy_A316 N-PAC protein; long-chain dehydrogenase, cytokine; 93.65
1xea_A323 Oxidoreductase, GFO/IDH/MOCA family; structural ge 93.62
1vpd_A299 Tartronate semialdehyde reductase; structural geno 93.58
3cky_A301 2-hydroxymethyl glutarate dehydrogenase; rossmann 93.55
2pgd_A482 6-phosphogluconate dehydrogenase; oxidoreductase ( 93.23
1vm6_A228 DHPR, dihydrodipicolinate reductase; TM1520, struc 93.15
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 93.12
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 93.02
1pgj_A478 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o 92.91
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 92.87
2obn_A349 Hypothetical protein; structural genomics, joint c 92.83
4gwg_A484 6-phosphogluconate dehydrogenase, decarboxylating; 92.79
3g0o_A303 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine 92.76
3upl_A446 Oxidoreductase; rossmann fold, NADPH binding; 1.50 92.48
3tri_A280 Pyrroline-5-carboxylate reductase; amino acid bios 92.37
3fr7_A525 Putative ketol-acid reductoisomerase (OS05G057370 92.07
1a59_A 378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 92.06
3ba1_A333 HPPR, hydroxyphenylpyruvate reductase; two domain 91.96
3oqb_A383 Oxidoreductase; structural genomics, protein struc 91.93
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 91.89
2cvz_A289 Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; 91.81
3l96_A 426 Citrate synthase; quaternary, hexamer, GRAM-negati 91.6
3mtj_A444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 91.4
4ezb_A317 Uncharacterized conserved protein; structural geno 91.37
3o8j_A 404 2-methylcitrate synthase; short chain fatty acids, 90.51
1z82_A335 Glycerol-3-phosphate dehydrogenase; TM0378, struct 90.05
2ahr_A259 Putative pyrroline carboxylate reductase; pyrrolin 89.71
1aj8_A 371 Citrate synthase; hyperthermostable, lyase; HET: C 89.57
2rcy_A262 Pyrroline carboxylate reductase; malaria, structur 89.46
1vgm_A 378 378AA long hypothetical citrate synthase; open for 89.44
4dgs_A340 Dehydrogenase; structural genomics, PSI-biology, N 89.13
1o7x_A 377 Citrate synthase; lyase, tricarboxylic acid cycle; 88.85
1mx3_A347 CTBP1, C-terminal binding protein 1; nuclear prote 88.71
4h3v_A390 Oxidoreductase domain protein; structural genomics 88.52
3b1f_A290 Putative prephenate dehydrogenase; enzyme, 4-hydro 88.19
3ulk_A491 Ketol-acid reductoisomerase; branched-chain amino 87.87
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 87.73
1csh_A 435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 87.73
1qp8_A303 Formate dehydrogenase; oxidoreductase; HET: NDP; 2 87.49
2ifc_A 385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 87.28
2ibp_A 409 Citrate synthase; disulfide bond, homodimer, therm 87.25
3gvx_A290 Glycerate dehydrogenase related protein; NYSGXRC, 87.06
2izz_A322 Pyrroline-5-carboxylate reductase 1; amino-acid bi 86.85
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 86.19
3d1l_A266 Putative NADP oxidoreductase BF3122; structural ge 85.94
2pv7_A298 T-protein [includes: chorismate mutase (EC 5.4.99 85.47
3ggo_A314 Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b 85.24
3k96_A356 Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA 84.99
1i36_A264 Conserved hypothetical protein MTH1747; NADP bindi 84.85
1yqg_A263 Pyrroline-5-carboxylate reductase; structural geno 84.69
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 84.51
3gt0_A247 Pyrroline-5-carboxylate reductase; structural geno 84.47
3msu_A 427 Citrate synthase; helix bundle, APHA-beta fold, cs 84.44
1sc6_A404 PGDH, D-3-phosphoglycerate dehydrogenase; alloster 84.18
3m2p_A311 UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J 84.13
1dxy_A333 D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc 83.94
3hg7_A324 D-isomer specific 2-hydroxyacid dehydrogenase FAM 83.65
3pid_A432 UDP-glucose 6-dehydrogenase; rossmann fold, oxidor 83.16
4ea9_A220 Perosamine N-acetyltransferase; beta helix, acetyl 82.81
1xdw_A331 NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas 82.14
3evt_A324 Phosphoglycerate dehydrogenase; structural genomic 81.95
2yq5_A343 D-isomer specific 2-hydroxyacid dehydrogenase; oxi 81.87
2g76_A335 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor 81.41
1gdh_A320 D-glycerate dehydrogenase; oxidoreductase(CHOH (D) 80.82
2w2k_A348 D-mandelate dehydrogenase; 2-hydroxyacid dehydroge 80.49
3k5p_A416 D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, 80.26
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
Probab=100.00  E-value=2.5e-72  Score=588.53  Aligned_cols=322  Identities=52%  Similarity=0.877  Sum_probs=282.7

Q ss_pred             cCCCCCCCcEEEEeeCCcHHHHHHHhcC-------CeEEEEEeCCCCCC-ccccccCceeecccccCCHHHHhhcCCCcc
Q 007482            3 TGQLFSKTTQALFYNYKQLPIQRMLDFD-------FLCVAGIINPGAEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMAD   74 (602)
Q Consensus         3 ~~~l~~p~s~avv~g~~~~~~~~~~~~g-------~~~V~gv~~p~~~~-~~~~~~g~~v~G~~~y~sv~~i~~~~p~vD   74 (602)
                      +..||+|++++||+|++|+++++|+++|       +++|++|+ |++++ .++.+||.+..|+|||+|++|++++.|++|
T Consensus         3 ~~~l~~~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~-P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~D   81 (334)
T 3mwd_B            3 STTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVY-PFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVD   81 (334)
T ss_dssp             CSCCCCTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEEC-TTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTCC
T ss_pred             cccccCCCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEc-CCCCCccceEeccCccCCceeeCCHHHHhhcCCCCc
Confidence            3589999999999999999999999997       67899996 97653 456678888899999999999987655689


Q ss_pred             EEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccc
Q 007482           75 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII  154 (602)
Q Consensus        75 lavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~  154 (602)
                      ++||+||++.+.++++|+|.++|+|.+||||+||+|.++++|+++||++|+||+||||+|++||+.+++|+++++|.+.+
T Consensus        82 laVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliGPNc~Gii~p~~~~ig~~~~~~~a~~  161 (334)
T 3mwd_B           82 VLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNIL  161 (334)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHHHH
T ss_pred             EEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEccCCccccCcchhhcccccccccccc
Confidence            99999999987899999999999999999999999999999999999999999999999999998767765556777677


Q ss_pred             cccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHH
Q 007482          155 HCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL  234 (602)
Q Consensus       155 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f  234 (602)
                      |...++||+||+|||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|+||+|++...+++|
T Consensus       162 ~~~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~  241 (334)
T 3mwd_B          162 ASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKI  241 (334)
T ss_dssp             HTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHH
T ss_pred             cccCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHHH
Confidence            77778999999999999999999999999999999999999994459999999999999999999999977666666999


Q ss_pred             HHHHHhcCCCCCEEEEEeCcCcc--CccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhHh
Q 007482          235 VEALKQGKVNKPVVAWVSGTCAR--LFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLV  312 (602)
Q Consensus       235 ~~~~r~~~~~KPVv~~k~Gr~~~--g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~  312 (602)
                      ++++|+.+++||||+||+||++.  |  +++++|||||++|++.+|+++|+++|||+|++|++|++||+++++.++++|+
T Consensus       242 ~~~~r~~~~~KPVV~~kaGrs~~~~g--~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~l~  319 (334)
T 3mwd_B          242 CRGIKEGRLTKPIVCWCIGTCATMFS--SEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLV  319 (334)
T ss_dssp             HHHHHTTSCCSCEEEEEECTTCC------------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCEEEEEcCCCccccc--ccccccchhhhccCCCccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHHHHH
Confidence            99999988999999999999998  7  8999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCC
Q 007482          313 EEGKIPPVKEVTPPQ  327 (602)
Q Consensus       313 ~~g~~~~~~~~~~~~  327 (602)
                      .+|+|.+..|.++|.
T Consensus       320 ~~~~~~~~~~~~~~~  334 (334)
T 3mwd_B          320 ANGVIVPAQEVPPPT  334 (334)
T ss_dssp             HTTSCCCCCCCCCCC
T ss_pred             HCCcEeeCCCCCCCC
Confidence            999999999998764
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Back     alignment and structure
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Back     alignment and structure
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Back     alignment and structure
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* Back     alignment and structure
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Back     alignment and structure
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Back     alignment and structure
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Back     alignment and structure
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Back     alignment and structure
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Back     alignment and structure
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Back     alignment and structure
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Back     alignment and structure
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Back     alignment and structure
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Back     alignment and structure
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Back     alignment and structure
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Back     alignment and structure
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Back     alignment and structure
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Back     alignment and structure
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Back     alignment and structure
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Back     alignment and structure
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Back     alignment and structure
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Back     alignment and structure
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* Back     alignment and structure
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Back     alignment and structure
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Back     alignment and structure
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Back     alignment and structure
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Back     alignment and structure
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Back     alignment and structure
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Back     alignment and structure
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Back     alignment and structure
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Back     alignment and structure
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Back     alignment and structure
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Back     alignment and structure
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Back     alignment and structure
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Back     alignment and structure
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} Back     alignment and structure
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Back     alignment and structure
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Back     alignment and structure
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Back     alignment and structure
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Back     alignment and structure
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Back     alignment and structure
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Back     alignment and structure
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Back     alignment and structure
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} Back     alignment and structure
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Back     alignment and structure
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Back     alignment and structure
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* Back     alignment and structure
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Back     alignment and structure
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Back     alignment and structure
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Back     alignment and structure
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Back     alignment and structure
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Back     alignment and structure
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Back     alignment and structure
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Back     alignment and structure
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} Back     alignment and structure
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Back     alignment and structure
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Back     alignment and structure
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Back     alignment and structure
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Back     alignment and structure
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} Back     alignment and structure
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A Back     alignment and structure
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Back     alignment and structure
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* Back     alignment and structure
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Back     alignment and structure
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Back     alignment and structure
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Back     alignment and structure
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Back     alignment and structure
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} Back     alignment and structure
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Back     alignment and structure
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Back     alignment and structure
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Back     alignment and structure
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Back     alignment and structure
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Back     alignment and structure
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Back     alignment and structure
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Back     alignment and structure
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Back     alignment and structure
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Back     alignment and structure
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Back     alignment and structure
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Back     alignment and structure
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Back     alignment and structure
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Back     alignment and structure
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Back     alignment and structure
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Back     alignment and structure
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Back     alignment and structure
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Back     alignment and structure
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* Back     alignment and structure
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Back     alignment and structure
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Back     alignment and structure
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 602
d1euca2176 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alph 6e-23
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 8e-23
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 1e-21
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 2e-21
d2nu7a2166 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alph 2e-19
d2csua2161 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chai 6e-19
d1oi7a2167 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alph 1e-18
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 5e-18
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 6e-18
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 1e-16
d2nu7a1119 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c 3e-11
d1euca1130 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c 2e-10
d1oi7a1121 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c 1e-09
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 176 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 94.1 bits (233), Expect = 6e-23
 Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 8/178 (4%)

Query: 134 GGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIA 193
           G I  G  KIG   G I        ++ G +G VS+SG ++ E  +   +V  G    + 
Sbjct: 4   GVINPGECKIGIMPGHI--------HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVG 55

Query: 194 IGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSG 253
           IGGD F G+  +D +  F N P  + ++++GE+GG  E +  E LKQ          VS 
Sbjct: 56  IGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSF 115

Query: 254 TCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 311
                     + GHAGA   G    A+ K  AL+ AG VV  S     + I + FEK 
Sbjct: 116 IAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKR 173
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 161 Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 167 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130 Back     information, alignment and structure
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 100.0
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 100.0
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 100.0
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 100.0
d2csua1129 Acetate-CoA ligase alpha chain, AcdA, N-terminal d 99.9
d1euca1130 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 99.85
d1oi7a1121 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 99.84
d2nu7a1119 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 99.84
d1y81a1116 Hypothetical protein PF0725 {Pyrococcus furiosus [ 99.78
d2d59a1139 Hypothetical protein PH1109 {Pyrococcus horikoshii 99.74
d1iuka_136 Hypothetical protein TT1466 {Thermus thermophilus 99.67
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 98.09
d1diha1162 Dihydrodipicolinate reductase {Escherichia coli [T 97.94
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 97.76
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 97.56
d1yl7a1135 Dihydrodipicolinate reductase {Mycobacterium tuber 96.84
d1f06a1170 Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb 96.82
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 96.72
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 96.39
d2dt5a2126 Transcriptional repressor Rex, C-terminal domain { 96.34
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 96.22
d1vm6a3128 Dihydrodipicolinate reductase {Thermotoga maritima 96.08
d1vpda2161 Hydroxyisobutyrate dehydrogenase {Salmonella typhi 95.88
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 95.88
d1j5pa4132 Hypothetical protein TM1643 {Thermotoga maritima [ 95.61
d1lc0a1172 Biliverdin reductase {Rat (Rattus norvegicus) [Tax 94.77
d3cuma2162 Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru 94.51
d2nvwa1237 Galactose/lactose metabolism regulatory protein GA 93.71
d1i36a2152 Conserved hypothetical protein MTH1747 {Archaeon M 93.26
d1xeaa1167 Putative oxidoreductase VCA1048 {Vibrio cholerae [ 93.15
d2g0ta1338 Hypothetical protein TM0796 {Thermotoga maritima [ 92.76
d2pgda2176 6-phosphogluconate dehydrogenase {Sheep (Ovis orie 92.25
d2cvza2156 Hydroxyisobutyrate dehydrogenase {Thermus thermoph 92.1
d1np3a2182 Class I ketol-acid reductoisomerase (KARI) {Pseudo 91.69
d2b0ja2242 5,10-methenyltetrahydromethanopterin hydrogenase, 90.79
d1o7xa_ 367 Citrate synthase {Archaeon Sulfolobus solfataricus 90.7
d1ioma_ 374 Citrate synthase {Thermus thermophilus [TaxId: 274 90.4
d2ahra2152 Pyrroline-5-carboxylate reductase ProC {Streptococ 89.59
d1aj8a_ 371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 89.13
d1a59a_ 377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 88.95
d1k3pa_ 426 Citrate synthase {Escherichia coli [TaxId: 562]} 88.62
d2pv7a2152 Prephenate dehydrogenase TyrA {Haemophilus influen 86.85
d1hdoa_205 Biliverdin IX beta reductase {Human (Homo sapiens) 83.85
d1bg6a2184 N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A 83.81
d1qmga2226 Class II ketol-acid reductoisomerase (KARI) {Spina 83.5
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 82.38
d1pgja2178 6-phosphogluconate dehydrogenase {Trypanosoma bruc 82.08
d2f1ka2165 Prephenate dehydrogenase TyrA {Synechocystis sp. p 82.01
d1yqga2152 Pyrroline-5-carboxylate reductase ProC {Neisseria 81.01
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=8.2e-48  Score=414.44  Aligned_cols=229  Identities=21%  Similarity=0.261  Sum_probs=203.4

Q ss_pred             CcccCcHHHHHHHhh---hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCC-CCCccc
Q 007482          339 GKVRAPTHIISTISD---DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGA  414 (602)
Q Consensus       339 ~Li~~~~~i~t~I~~---~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg-~~~st~  414 (602)
                      +|++..+.++..+.+   ..++++..++.+++       +.+||++|+ .+  ++|...++||++||+||||| .|+|| 
T Consensus       175 ~LiAk~P~i~A~~yr~~~~~g~~~~~pd~~ls-------~a~nfl~ml-~~--~~p~~~~~l~~~lil~aDHeg~n~St-  243 (435)
T d1csha_         175 DLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLD-------WSHNFTNML-GY--TDPQFTELMRLYLTIHSDHEGGNVSA-  243 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSC-------HHHHHHHHH-TC--CCHHHHHHHHHHHHHTSCCCSCSHHH-
T ss_pred             HHHHhhhHHHHHHHHHHhcCCCCCCCCCCCcC-------HHHHHHHHh-cC--ccHHHHHHHHHHHHHHhhccCCcchH-
Confidence            478888888888765   36788888899999       999999998 33  46678999999999999996 89899 


Q ss_pred             hheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc------cccCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007482          415 HNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGHRIKRG  487 (602)
Q Consensus       415 ~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGfGH~v~~~  487 (602)
                      |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+      ..++++++|++.+++|++|||||||+||.
T Consensus       244 ~a~rvvaSt~sd~~sav~agi~al~GplHGGA~~~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vyk~  323 (435)
T d1csha_         244 HTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRK  323 (435)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSCCS
T ss_pred             HHHHHHhccccchHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCcccccCcccccC
Confidence            999999999999999999999998 99999999999999999842      22567899999999999999999999996


Q ss_pred             CCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHh------ccCCCccchhHHHHHHHHHHhhc-cCCCChHHHHHHHh
Q 007482          488 DNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVE  560 (602)
Q Consensus       488 ~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p  560 (602)
                        .|||+++|+++++++...+++++++.++++++.+      +.|+++||||||+|++|+.||+| .+|||+        
T Consensus       324 --~DPRa~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~k~l~pNVD~~sg~~~~~lG~p~~~~~t~--------  393 (435)
T d1csha_         324 --TDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTV--------  393 (435)
T ss_dssp             --CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHH--------
T ss_pred             --CCcchHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHcCCCchhhHHH--------
Confidence              5999999999999999999999999988887632      56899999999999999999997 589988        


Q ss_pred             hcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCC
Q 007482          561 IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP  594 (602)
Q Consensus       561 ~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~  594 (602)
                            +|++||++||+|||+||+....|+.|+.
T Consensus       394 ------lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~  421 (435)
T d1csha_         394 ------LFGVSRALGVLAQLIWSRALGFPLERPK  421 (435)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             ------HHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence                  9999999999999999986666676663
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Back     information, alignment and structure
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Back     information, alignment and structure
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Back     information, alignment and structure