Citrus Sinensis ID: 007484

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
MAFRFDYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccEEEEEEcccccccccEEEEEEEEEccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEccccccccccHHHHHHHccccccccEEEEEcccccccccEEEEccccccHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccEHHHcccccEEEEcccEEEEEEEccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHcccccHHccEEEEEEcHcccccHEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEEEEccccccccEEEEEcccEEEEccccccccccccHHHHHHHHHHHHHHHHHcccHcccccccccHccccHHcccccEEEEEHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccEEEEEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEcEEEcccccHHHHHHHHcccccHEEEEcHHHHHHHHHHHHcc
mafrfdyrDVTAFKVLLVLSFMYGLMSALVYSIVHLKfvkpldsdapldrfSEARAIQHVRVLADEigdrqegrpgLREAAVYIKTQLEGikeragpkfrieIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRisstdsqdtdpsvlmnghfdgplsspgagdcgsCVASMLELARLTidsgwipprpiiflFNGAEELFMLGahgfmkahkwrDSVGAVINVeasgtggldlvcqsgpsswpssvyaqsaiypmahsaaqdvfpvipgdtdyrifsqdygdipglDIIFLIGGyyyhtshdtvdrllpgsvqarGDNLFNVLKAFSnssklqnahdrasfeatgikntderAIFFDYLTWFMIYYSRsratvlhgipIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGyamswfahpFLAFMMFIPCsllglliprslwshfplsqdAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTrycsgssswccnwlvcgpsftnLWSLASQVICPAVFVASDCACLGALITVLSI
mafrfdyrdvtAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLAdeigdrqegrpglREAAVYIKTQlegikeragpkfrIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASfeatgikntderAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
MAFRFDYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGipivifitvpffLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
**FRFDYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIG*******GLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRI***************************GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAF***************EATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVL**
***********AFKVLLVLSFMYGLMSALVYSIVHL****************EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQN*************NTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
MAFRFDYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
*****DYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQ*****AS**ATG*KNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAFRFDYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLRTRYCSGSSSWCCNWLVCGPSFTNLWSLASQVICPAVFVASDCACLGALITVLSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query602 2.2.26 [Sep-21-2011]
Q18600 895 Uncharacterized zinc meta yes no 0.566 0.381 0.352 1e-51
Q0VGW4 876 Endoplasmic reticulum met N/A no 0.689 0.473 0.317 2e-51
Q7Z2K6 904 Endoplasmic reticulum met yes no 0.644 0.429 0.325 3e-50
Q6UPR8 898 Endoplasmic reticulum met yes no 0.644 0.432 0.330 4e-50
Q3UVK0 898 Endoplasmic reticulum met yes no 0.644 0.432 0.317 4e-48
Q09216 895 Uncharacterized protein B no no 0.559 0.376 0.338 2e-44
O94702 822 Uncharacterized zinc meta yes no 0.468 0.343 0.332 3e-34
Q6CDE6 989 Probable zinc metalloprot yes no 0.365 0.222 0.312 5e-22
O94479 843 Probable zinc metallopept no no 0.340 0.243 0.323 5e-20
Q6BMD6 1016 Probable zinc metalloprot yes no 0.516 0.306 0.280 1e-18
>sp|Q18600|YTV2_CAEEL Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4 Back     alignment and function desciption
 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 22/363 (6%)

Query: 32  SIVHLKFVKPLDSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLRE-AAVYIKTQLEG 90
           + +H    +P D +    +FSE RA++ ++ L+D  G +  G     E     I  +L  
Sbjct: 58  TFLHKCLPEPKDPNQEETQFSEKRAVKVLQELSD-YGWKPAGSYNCEELTRNRILKELND 116

Query: 91  IKERAG--PKFRIEIEENVVNGSFNM-IFLGHSISLGYRNHTNIVMRISSTDSQDTDPSV 147
           I+ +       R +I+   V+G F++       +++ YRN +N++ R+   + +D   SV
Sbjct: 117 IRSQNQNVENLRFDIDTQYVSGCFDIPAHDTEGMNICYRNVSNVMARLGKGEKKD-KISV 175

Query: 148 LMNGHFDG-PLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAH 206
           L+N H+D  P S+ G+ D  SC A MLEL RL   +  +    +IFLFNGAEE  +L AH
Sbjct: 176 LLNCHYDSWPTSNAGSDDLSSC-ALMLELIRLYSKNPHLLNHDVIFLFNGAEESSLLAAH 234

Query: 207 GFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSS-WPSSVYAQSAIYPMAHSAAQDVF 265
           GF+  H WR  + A IN+EASG+GG +L+ Q+GP++ W  + Y ++AI+P      Q+VF
Sbjct: 235 GFITQHSWRHEIRAFINLEASGSGGRELLFQAGPANQWLLNSYLEAAIHPHCSVIGQEVF 294

Query: 266 P--VIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNV 323
              V PGDTD+RIF +D+G +PGLD+ F+  GY++HT  DT +R+  GS+Q  G+N+++ 
Sbjct: 295 QSGVYPGDTDFRIF-RDHGRVPGLDLAFVQNGYWWHTEFDTAERITKGSLQRAGENVYST 353

Query: 324 LKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIF 383
           L     S  L+   + A          D + +FFD+L  F+I Y  S A +++ + I   
Sbjct: 354 LNHLLKSPYLEKPAEYA----------DRKTVFFDFLGLFVIIYPLSIAHLVNMLTICTV 403

Query: 384 ITV 386
           I +
Sbjct: 404 IAL 406

Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q0VGW4|ERMP1_XENLA Endoplasmic reticulum metallopeptidase 1 OS=Xenopus laevis GN=ermp1 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z2K6|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1 OS=Homo sapiens GN=ERMP1 PE=1 SV=2 Back     alignment and function description
>sp|Q6UPR8|ERMP1_RAT Endoplasmic reticulum metallopeptidase 1 OS=Rattus norvegicus GN=Ermp1 PE=1 SV=1 Back     alignment and function description
>sp|Q3UVK0|ERMP1_MOUSE Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=1 SV=2 Back     alignment and function description
>sp|Q09216|YP67_CAEEL Uncharacterized protein B0495.7 OS=Caenorhabditis elegans GN=B0495.7 PE=1 SV=2 Back     alignment and function description
>sp|O94702|YC52_SCHPO Uncharacterized zinc metalloprotease C1259.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1259.02c PE=3 SV=1 Back     alignment and function description
>sp|Q6CDE6|M28P1_YARLI Probable zinc metalloprotease YALI0C01133g OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0C01133g PE=3 SV=1 Back     alignment and function description
>sp|O94479|M28P1_SCHPO Probable zinc metallopeptidase C1919.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.12c PE=3 SV=1 Back     alignment and function description
>sp|Q6BMD6|M28P1_DEBHA Probable zinc metalloprotease DEHA2F06380g OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2F06380g PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
255547740 1086 protein with unknown function [Ricinus c 0.901 0.5 0.741 0.0
225425460 873 PREDICTED: endoplasmic reticulum metallo 0.905 0.624 0.702 0.0
356512367 868 PREDICTED: endoplasmic reticulum metallo 0.887 0.615 0.702 0.0
449452901 872 PREDICTED: endoplasmic reticulum metallo 0.905 0.625 0.697 0.0
449489240 872 PREDICTED: LOW QUALITY PROTEIN: endoplas 0.905 0.625 0.695 0.0
356528256 858 PREDICTED: endoplasmic reticulum metallo 0.862 0.604 0.689 0.0
297838477 873 peptidase [Arabidopsis lyrata subsp. lyr 0.903 0.623 0.642 0.0
147838176 829 hypothetical protein VITISV_011748 [Viti 0.828 0.601 0.690 0.0
334183713 922 Zn-dependent exopeptidase-like protein [ 0.898 0.586 0.634 0.0
145337255 872 Zn-dependent exopeptidase-like protein [ 0.898 0.620 0.635 0.0
>gi|255547740|ref|XP_002514927.1| protein with unknown function [Ricinus communis] gi|223545978|gb|EEF47481.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/545 (74%), Positives = 467/545 (85%), Gaps = 2/545 (0%)

Query: 1   MAFRFDYRDVTAFKVLLVLSFMYGLMSALVYSIVHLKFVKPLDSDAPLDRFSEARAIQHV 60
           MA R    D++ FK L+ L+ MYGLMS  VY I+H+KF+ PLD DAPLDRFSEARA++HV
Sbjct: 1   MALRLSSGDISGFKFLISLAIMYGLMSVAVYYIIHMKFITPLDIDAPLDRFSEARAVEHV 60

Query: 61  RVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHS 120
           RVLA +   RQEGRPGLREAA+YI+TQLE IK+RAG  FR+EIEE VVNGSFNMIFLGHS
Sbjct: 61  RVLAQD--GRQEGRPGLREAAIYIRTQLEMIKDRAGSDFRVEIEEEVVNGSFNMIFLGHS 118

Query: 121 ISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTI 180
           ISLGYRNHTNIVMRISS DS+DTDPSVL+NGHFD PL SPGAGDCGSCVASMLELAR+  
Sbjct: 119 ISLGYRNHTNIVMRISSVDSKDTDPSVLINGHFDSPLGSPGAGDCGSCVASMLELARVIT 178

Query: 181 DSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGP 240
           DSGW+PPRPIIFLFNGAEELFMLGAHGFMK +KWR+S+GA INVEASG+GG DLVCQSGP
Sbjct: 179 DSGWVPPRPIIFLFNGAEELFMLGAHGFMKTYKWRNSIGASINVEASGSGGPDLVCQSGP 238

Query: 241 SSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHT 300
            +WPS VYAQSAIYPMAHSAAQDVFPVIPGDTDYR+FSQDYG+IP LDIIFL+GGYYYHT
Sbjct: 239 GAWPSLVYAQSAIYPMAHSAAQDVFPVIPGDTDYRMFSQDYGNIPSLDIIFLLGGYYYHT 298

Query: 301 SHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYL 360
           S+DT+D+LLPGS+QARGDNL ++LKAF+NSSKL+ A +R S  AT     DERA+FFDYL
Sbjct: 299 SYDTLDKLLPGSMQARGDNLLSILKAFTNSSKLRTAQERESLRATSNDYKDERAVFFDYL 358

Query: 361 TWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKML 420
           +WFMI+YSR  + VLH IPI IF  +PFFLRLL+SGL S FAT+ DFVKG ++HA+G +L
Sbjct: 359 SWFMIFYSRRVSLVLHSIPIAIFFVMPFFLRLLDSGLQSSFATFYDFVKGFLLHASGILL 418

Query: 421 AIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLL 480
           AI  P+ FS++RL FS +AM+WFAHPFLAFMMFIPCSL+GLLIPR +W+ FPLSQD  +L
Sbjct: 419 AIALPVIFSIVRLFFSSHAMNWFAHPFLAFMMFIPCSLIGLLIPRIVWNSFPLSQDVSVL 478

Query: 481 KTSKEALSDEARFWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYG 540
           K  KEALS+EARFWGA+GFYA LT+AYL AGL+GGFLTF+V+  MLPAWI F + I  YG
Sbjct: 479 KKPKEALSNEARFWGAYGFYACLTLAYLAAGLSGGFLTFLVSAFMLPAWICFNLYIKSYG 538

Query: 541 RRSLR 545
            + LR
Sbjct: 539 HQPLR 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425460|ref|XP_002279240.1| PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera] gi|297738431|emb|CBI27632.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512367|ref|XP_003524891.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449452901|ref|XP_004144197.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489240|ref|XP_004158256.1| PREDICTED: LOW QUALITY PROTEIN: endoplasmic reticulum metallopeptidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356528256|ref|XP_003532720.1| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297838477|ref|XP_002887120.1| peptidase [Arabidopsis lyrata subsp. lyrata] gi|297332961|gb|EFH63379.1| peptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147838176|emb|CAN74144.1| hypothetical protein VITISV_011748 [Vitis vinifera] Back     alignment and taxonomy information
>gi|334183713|ref|NP_001185342.1| Zn-dependent exopeptidase-like protein [Arabidopsis thaliana] gi|332196522|gb|AEE34643.1| Zn-dependent exopeptidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145337255|ref|NP_176909.3| Zn-dependent exopeptidase-like protein [Arabidopsis thaliana] gi|332196521|gb|AEE34642.1| Zn-dependent exopeptidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
FB|FBgn0050049 878 CG30049 [Drosophila melanogast 0.715 0.490 0.331 3.6e-56
FB|FBgn0050047 879 CG30047 [Drosophila melanogast 0.717 0.491 0.313 1.6e-55
FB|FBgn0050043 878 CG30043 [Drosophila melanogast 0.789 0.541 0.303 9.1e-53
WB|WBGene00016631 895 C44B7.11 [Caenorhabditis elega 0.566 0.381 0.349 1.5e-52
UNIPROTKB|F1MI95 892 ERMP1 "Uncharacterized protein 0.639 0.431 0.342 7.5e-51
FB|FBgn0033720 896 CG13160 [Drosophila melanogast 0.717 0.482 0.302 2.1e-50
FB|FBgn0034439 862 CG10062 [Drosophila melanogast 0.739 0.516 0.294 2.2e-50
UNIPROTKB|E1C3Q6 885 ERMP1 "Uncharacterized protein 0.662 0.450 0.317 8.9e-50
UNIPROTKB|F1SMM0 905 ERMP1 "Uncharacterized protein 0.642 0.427 0.336 9.9e-50
UNIPROTKB|E7ER77 841 ERMP1 "Endoplasmic reticulum m 0.644 0.461 0.327 2.4e-49
FB|FBgn0050049 CG30049 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 566 (204.3 bits), Expect = 3.6e-56, Sum P(2) = 3.6e-56
 Identities = 155/467 (33%), Positives = 253/467 (54%)

Query:    20 SFMYGLMSALVYSIVHLKFVKPLD----SDAPLD--RFSEARAIQHVRVLADEIGDRQEG 73
             SF+  L  AL Y+IV   F +  D    +D PL   +F   RA Q +    D IG +  G
Sbjct:    38 SFLL-LWVALFYAIVLPLFYRLPDRVTMADEPLKPGQFVGERA-QKILYELDRIGPKVVG 95

Query:    74 RPGLREAAV-YIKTQLEGIK-ERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131
                     V ++  ++E I+ E  G  F +E++     GS+    +G   S+ Y+   N+
Sbjct:    96 STANEVTTVAFLLNEVEKIRSEMRGDLFHLEVDVQQPTGSY---VVGTMTSI-YQGIQNV 151

Query:   132 VMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELAR-LTIDSGWIPPRPI 190
             V+++S T S ++   +L+N HFD    SPGAGD G+ V  MLE+ R ++I        PI
Sbjct:   152 VVKLS-TASSNSSSYLLINSHFDTKPGSPGAGDDGTMVVVMLEVLRQMSISESEFM-HPI 209

Query:   191 IFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSS-WPSSVYA 249
             +FLFNGAEE  +  +HGF+  HKW  +  AVIN+E  G GG D++ QSGP++ W    Y 
Sbjct:   210 VFLFNGAEENPLQASHGFITQHKWAPNCKAVINLEVGGNGGRDILFQSGPNNPWLVKYYK 269

Query:   250 QSAIYPMAHSAAQDVFP--VIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDR 307
             Q + +P A + A+++F   ++P DTD+RIF +DYG+IPGLDI     GY YHT+ D+ D 
Sbjct:   270 QHSKHPFASTLAEEIFQFGILPSDTDFRIF-RDYGNIPGLDIAQFSNGYVYHTAFDSFD- 327

Query:   308 LLPG-SVQARGDNLFNVLKAFSNSSKLQNAHDRASFEATGIKNTDERAIFFDYLTWFMIY 366
             ++PG +VQ  G+N+ ++++A SN+S+L N ++ ++    G       A+FFD+L  F + 
Sbjct:   328 VVPGRAVQNTGENILSLVRALSNASELYNTNEHSA----G------HAVFFDFLGLFFVT 377

Query:   367 YSRSRATVLHGXXXXXXXXXXXXLRLLNSGLHSWFATYSD--FVKGMMIHATGKMLAIIF 424
             Y+ +   +L+                  S +    A      F   + +H  G +L I  
Sbjct:   378 YTENTGIILNYCFAVASVFLVGFSLWRMSCVSEVSAGRISILFASHLGLHLAGCLLCIGL 437

Query:   425 PIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHF 471
             P+  S+L  + S   M+++++ +L   ++I  +++GL++P +L+  F
Sbjct:   438 PLVMSILYDV-SDRTMTYYSNNWLVIGLYICPAIIGLVLPSTLYHSF 483
GO:0005575 "cellular_component" evidence=ND
GO:0006508 "proteolysis" evidence=IEA
GO:0008233 "peptidase activity" evidence=IEA
FB|FBgn0050047 CG30047 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0050043 CG30043 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00016631 C44B7.11 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1MI95 ERMP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0033720 CG13160 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0034439 CG10062 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3Q6 ERMP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMM0 ERMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E7ER77 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002838001
SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (873 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
cd03875307 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasm 1e-120
pfam04389173 pfam04389, Peptidase_M28, Peptidase family M28 1e-43
cd02690252 cd02690, M28, M28 Zn-peptidases include aminopepti 4e-24
cd08015275 cd08015, M28_like_4, M28 Zn-Peptidases 3e-14
COG2234435 COG2234, Iap, Predicted aminopeptidases [General f 2e-12
cd03877254 cd03877, M28_like_PA, M28 Zn-Peptidases containing 4e-10
cd05640279 cd05640, M28_like_1, M28 Zn-Peptidases 1e-09
cd08022286 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate- 2e-09
cd05663260 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptid 7e-09
cd03874279 cd03874, M28_PMSA_TfR_like, M28 Zn-peptidase Trans 1e-08
cd05661305 cd05661, M28_like_PA_2, M28 Zn-Peptidases containi 2e-08
cd03873237 cd03873, Zinc_peptidase_like, Zinc peptidases M18, 2e-08
cd05643288 cd05643, M28_like_7, M28 Zn-Peptidases 7e-08
COG0624409 COG0624, ArgE, Acetylornithine deacetylase/Succiny 4e-07
cd03879285 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibr 5e-07
cd05642348 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas 4e-06
cd08021277 cd08021, M28_like_5, M28 Zn-Peptidase IAP aminopep 7e-06
cd05662267 cd05662, M28_like_2, M28 Zn-Peptidases 4e-05
cd03883276 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl 6e-05
cd08659365 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo 7e-05
cd03896359 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar 1e-04
cd05660306 cd05660, M28_like_PA_1, M28 Zn-Peptidases containi 0.003
cd03876288 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomy 0.004
>gnl|CDD|193497 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1 Back     alignment and domain information 
 Score =  356 bits (917), Expect = e-120
 Identities = 133/322 (41%), Positives = 190/322 (59%), Gaps = 17/322 (5%)

Query: 48  LDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENV 107
            ++FSE RA  H+R LA  IG    G     +   Y+  +LE I  RA     +E++++ 
Sbjct: 1   PEQFSEERAWSHLRALAS-IGPHPYGSANEDKVRDYLLERLEEIGGRASNSLEVEVQDDY 59

Query: 108 VNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGS 167
            +GS +  FLG  ++  Y   TNIV+RIS  ++  ++ ++L+N H+D   +SPGA D GS
Sbjct: 60  GSGSSD--FLGGGMTSVYFEGTNIVVRISGKNN-GSEGALLLNAHYDSVPTSPGASDDGS 116

Query: 168 CVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227
            VA MLE+ R    SG  P R +IFLFNGAEE  +LGAHGF+  H W  +V A IN+EA+
Sbjct: 117 GVAVMLEVLRALAKSGEPPKRDVIFLFNGAEENGLLGAHGFITQHPWAKNVRAFINLEAA 176

Query: 228 GTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFP--VIPGDTDYRIFSQDYGDIP 285
           G GG  ++ Q+GP  W    Y ++A +P A   AQDVF   +IP DTD+R+F  +YG +P
Sbjct: 177 GAGGRAILFQTGPGPWLVEAYYKAAPHPFATVLAQDVFQSGLIPSDTDFRVFR-EYGGLP 235

Query: 286 GLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEAT 345
           GLDI F+  GY YHT +DT D + PGS+Q  G+NL  +L+  +NS +L+N  +       
Sbjct: 236 GLDIAFIENGYVYHTKYDTADHISPGSLQHMGENLLALLRYLANSDELENDSEYRG---- 291

Query: 346 GIKNTDERAIFFDYLTWFMIYY 367
                   A++FD L  F + Y
Sbjct: 292 ------GDAVYFDLLGLFFVVY 307

Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this cluster is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown. Length = 307
>gnl|CDD|218057 pfam04389, Peptidase_M28, Peptidase family M28 Back     alignment and domain information
>gnl|CDD|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases Back     alignment and domain information
>gnl|CDD|193563 cd08015, M28_like_4, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|225143 COG2234, Iap, Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert Back     alignment and domain information
>gnl|CDD|193519 cd05640, M28_like_1, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|193568 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-specific membrane antigen Back     alignment and domain information
>gnl|CDD|193539 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptidases containing a PA domain insert and associated with a PDZ domain Back     alignment and domain information
>gnl|CDD|193496 cd03874, M28_PMSA_TfR_like, M28 Zn-peptidase Transferrin Receptor-like family Back     alignment and domain information
>gnl|CDD|193537 cd05661, M28_like_PA_2, M28 Zn-Peptidases containing a PA domain insert Back     alignment and domain information
>gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 Back     alignment and domain information
>gnl|CDD|193521 cd05643, M28_like_7, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|193500 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase Back     alignment and domain information
>gnl|CDD|193520 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase (AAP)-like Back     alignment and domain information
>gnl|CDD|193567 cd08021, M28_like_5, M28 Zn-Peptidase IAP aminopeptidase may contain PA domain insert Back     alignment and domain information
>gnl|CDD|193538 cd05662, M28_like_2, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase Back     alignment and domain information
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like Back     alignment and domain information
>gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins Back     alignment and domain information
>gnl|CDD|193536 cd05660, M28_like_PA_1, M28 Zn-Peptidases containing a PA domain insert Back     alignment and domain information
>gnl|CDD|193498 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus Aminopeptidase and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 602
KOG2194 834 consensus Aminopeptidases of the M20 family [Postt 100.0
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 99.96
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 99.96
KOG2195702 consensus Transferrin receptor and related protein 99.95
KOG3946338 consensus Glutaminyl cyclase [Posttranslational mo 99.82
COG2234435 Iap Predicted aminopeptidases [General function pr 99.74
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 99.54
PRK09133472 hypothetical protein; Provisional 99.48
PRK12891414 allantoate amidohydrolase; Reviewed 99.47
PRK12890414 allantoate amidohydrolase; Reviewed 99.47
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 99.45
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 99.44
PRK08596421 acetylornithine deacetylase; Validated 99.43
PRK09290413 allantoate amidohydrolase; Reviewed 99.43
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 99.42
PRK06133410 glutamate carboxypeptidase; Reviewed 99.42
PRK07473376 carboxypeptidase; Provisional 99.41
PRK12892412 allantoate amidohydrolase; Reviewed 99.38
PRK12893412 allantoate amidohydrolase; Reviewed 99.37
PRK13013427 succinyl-diaminopimelate desuccinylase; Reviewed 99.35
PRK07338402 hypothetical protein; Provisional 99.35
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 99.34
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 99.34
PRK07906426 hypothetical protein; Provisional 99.34
PRK08262486 hypothetical protein; Provisional 99.31
PRK07907449 hypothetical protein; Provisional 99.31
PRK06446436 hypothetical protein; Provisional 99.3
PRK09104464 hypothetical protein; Validated 99.3
PF09940386 DUF2172: Domain of unknown function (DUF2172); Int 99.29
PF05450234 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri 99.28
PRK08201456 hypothetical protein; Provisional 99.27
TIGR01880400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 99.27
PRK13983400 diaminopimelate aminotransferase; Provisional 99.27
TIGR01893477 aa-his-dipept aminoacyl-histidine dipeptidase. 99.25
PRK04443348 acetyl-lysine deacetylase; Provisional 99.24
PRK07079469 hypothetical protein; Provisional 99.24
PRK06915422 acetylornithine deacetylase; Validated 99.23
PRK05469408 peptidase T; Provisional 99.22
PRK06837427 acetylornithine deacetylase; Provisional 99.2
TIGR01883361 PepT-like peptidase T-like protein. This model rep 99.2
PRK07318466 dipeptidase PepV; Reviewed 99.19
PRK13381404 peptidase T; Provisional 99.18
TIGR01882410 peptidase-T peptidase T. This model represents a t 99.17
PRK07522385 acetylornithine deacetylase; Provisional 99.17
PRK15026485 aminoacyl-histidine dipeptidase; Provisional 99.17
TIGR01892364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 99.17
PRK00466346 acetyl-lysine deacetylase; Validated 99.16
PRK08652347 acetylornithine deacetylase; Provisional 99.16
KOG2275420 consensus Aminoacylase ACY1 and related metalloexo 99.16
PRK13009375 succinyl-diaminopimelate desuccinylase; Reviewed 99.16
PRK07205444 hypothetical protein; Provisional 99.15
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 99.15
COG4882486 Predicted aminopeptidase, Iap family [General func 99.15
PRK06156520 hypothetical protein; Provisional 99.14
PRK05111383 acetylornithine deacetylase; Provisional 99.14
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 99.13
KOG2526555 consensus Predicted aminopeptidases - M20/M25/M40 99.13
PRK08554438 peptidase; Reviewed 99.11
COG0624409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 99.1
TIGR01886466 dipeptidase dipeptidase PepV. This model represent 99.09
TIGR01246370 dapE_proteo succinyl-diaminopimelate desuccinylase 99.07
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 99.06
PRK13004399 peptidase; Reviewed 99.06
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 99.02
TIGR01902336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 99.0
TIGR01900373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 98.99
TIGR01887447 dipeptidaselike dipeptidase, putative. This model 98.96
TIGR03106343 trio_M42_hydro hydrolase, peptidase M42 family. Th 98.96
TIGR01891363 amidohydrolases amidohydrolase. This model represe 98.88
TIGR03526395 selenium_YgeY putative selenium metabolism hydrola 98.86
TIGR03320395 ygeY M20/DapE family protein YgeY. Members of this 98.86
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 98.86
PRK09961344 exoaminopeptidase; Provisional 98.86
PRK08737364 acetylornithine deacetylase; Provisional 98.85
PRK09864356 putative peptidase; Provisional 98.77
PLN02693437 IAA-amino acid hydrolase 98.72
PLN02280478 IAA-amino acid hydrolase 98.68
COG4187553 RocB Arginine degradation protein (predicted deacy 98.66
COG4310435 Uncharacterized protein conserved in bacteria with 98.5
KOG2276473 consensus Metalloexopeptidases [Amino acid transpo 98.38
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 98.0
KOG2657596 consensus Transmembrane glycoprotein nicastrin [Si 97.9
COG1473392 AbgB Metal-dependent amidase/aminoacylase/carboxyp 96.8
COG2195414 PepD Di- and tripeptidases [Amino acid transport a 95.96
PF04114504 Gaa1: Gaa1-like, GPI transamidase component ; Inte 94.36
PRK02256462 putative aminopeptidase 1; Provisional 82.55
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-95  Score=815.57  Aligned_cols=526  Identities=27%  Similarity=0.478  Sum_probs=464.1

Q ss_pred             HHhhccCCCC--C-CCCCcCcccHHHHHHHHHHHHHhcCCCCCCChhHH-HHHHHHHHHHhcccccCCCc-eeEEEEeee
Q 007484           33 IVHLKFVKPL--D-SDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLR-EAAVYIKTQLEGIKERAGPK-FRIEIEENV  107 (602)
Q Consensus        33 ~~~~~~~~p~--~-~~~~~~~Fs~era~~~L~~La~~ig~R~~gS~~~e-~a~~yL~~~l~~ig~~~~~~-~~vevd~~~  107 (602)
                      +.+.+.|.|+  + +++.+++|+++||++++++++ ++|||++||++|| .+++|+++|+++++...+.+ +++|+|.|.
T Consensus        33 ~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls-~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~  111 (834)
T KOG2194|consen   33 YLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLS-AAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQS  111 (834)
T ss_pred             HHHhhccccCCCcchhcCchhhHHHHHHHHHHHHH-hcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceee
Confidence            3444444444  3 334478999999999999999 7999999999999 99999999999999876543 689999999


Q ss_pred             ecCccccccccccccccccccceEEEEEeCCCCCCCCCEEEEeeecCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCC
Q 007484          108 VNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPP  187 (602)
Q Consensus       108 ~~G~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~vll~aH~Dsv~~~pGA~D~~sGva~~LE~ar~L~~~~~~p~  187 (602)
                      .+|+|..    +.++++|++++||++|+++++. ..+.+++++||+||||++|||+||++|||+|||++|++.+.....+
T Consensus       112 ~sg~~~~----~~~~~~Y~~i~NIvVki~~k~~-~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~  186 (834)
T KOG2194|consen  112 ASGSFIL----EGMTLVYQNISNIVVKISPKNG-NDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLT  186 (834)
T ss_pred             ccceeee----hhhhheeeeeeeEEEecCCCCC-CccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCCccc
Confidence            9998844    6788999999999999999864 3445999999999999999999999999999999999999877789


Q ss_pred             CCEEEEEeCcccCCccchHHHHhhcCccCceeEEEEeccCCCCCCceEEecCCCCChhhhhhhhhccccccccccccc--
Q 007484          188 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVF--  265 (602)
Q Consensus       188 ~~I~flf~~aEE~gl~GS~~f~~~h~~~~~i~a~INLD~~G~gg~~~lfq~gp~~~~~~~y~~~~~~p~~~~~~~e~f--  265 (602)
                      |+|+|+||++||.+++|||+|++||||+++|+++||||++|+||++++||+||++|+++.|.++++||++++++||+|  
T Consensus       187 ~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~  266 (834)
T KOG2194|consen  187 HSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQS  266 (834)
T ss_pred             ccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999998899999999999999999999999  


Q ss_pred             CCCCCCCchHHHhhcCCCCcEEEEEeecCCCcCCCcccccCCCCHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhhhh
Q 007484          266 PVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEAT  345 (602)
Q Consensus       266 ~~ips~tD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a~~l~~~~~~~~~~~~  345 (602)
                      |.+||+|||++|+ +|+|+||+|+++..|++.|||++|.++++.++++||+|+|++++++.++|+ ++.+.+++      
T Consensus       267 g~IpSdTDfrif~-eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~~~~~~------  338 (834)
T KOG2194|consen  267 GIIPSDTDFRIFR-EYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELDNSTER------  338 (834)
T ss_pred             CcCccccchHHHH-HhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhcccccc------
Confidence            8999999999996 699999999999999999999999999999999999999999999999998 67654443      


Q ss_pred             cCCCCCCCeeEccchhHhhhHccHHHHHHHHhhHHHHhhccceEEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007484          346 GIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFP  425 (602)
Q Consensus       346 ~~~~~~~~~V~fd~lg~~~v~y~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (602)
                          .++ .||||++|++++.|+++++++||.++....      +++.-+....  + ++.|...+.++++++++++++|
T Consensus       339 ----~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~~i------~l~~~~~g~~--~-~~~f~~~~~~~i~s~~~~~~l~  404 (834)
T KOG2194|consen  339 ----SKG-TVYFDVVGKYFLAYSESTGVILNITICISI------WLMSLRSGSS--Q-LGKFILACLLQILSIVVAIGLP  404 (834)
T ss_pred             ----CCC-ceehhhhhhhhheeehhhhhhhhhhhhhhh------hhhhhcccch--h-hhhHHHHHHHHHHHHHHHHhhH
Confidence                345 999999999999999999999994333221      1221111111  2 7888999999999999999999


Q ss_pred             HHHHHHHHHhcCCeeeeechhhHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhhhhcccccc-hhHHHHHHHHHHHHHH
Q 007484          426 IAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALS-DEARFWGAFGFYAMLT  504 (602)
Q Consensus       426 ~~~a~~~~~~~~~~m~w~s~~~l~~~ly~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  504 (602)
                      +++|++++.+ +.+|+||++||+++++|.||+++|+.+++.+|.++.|        +.+.+.. ..+.+.|.  ++++|+
T Consensus       405 ~~~a~~l~~v-~l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~--------~~~~~~~~~~ql~~h~--~l~~l~  473 (834)
T KOG2194|consen  405 VLVALFLDWV-GLPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSK--------RHSLEYLQHDQLLLHS--LLSILL  473 (834)
T ss_pred             HHHHHHhhcc-cccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhcc--------ccccchhhHHHHHHHH--HHHHHH
Confidence            9999988876 7799999999999999999999999999999877654        2222222 23555555  889999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhHHHHHHHHHhhhhcCCCceeEEE----EeeccccchhhhHHhhccccccccc------c
Q 007484          505 MAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRVLR----TRYCSGSSSWCCNWLVCGPSFTNLW------S  574 (602)
Q Consensus       505 ~~~~~~g~~s~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~p~------~  574 (602)
                      +++|++||||+|+++++++|++++.+ +++.++++.++..|...    |++|+.   +.+|.++.++.+|+||      +
T Consensus       474 ~~~t~y~I~S~y~~~~~~~~~v~~~~-~~~~~~l~~~~~~~~~~~~i~~~~p~~---~~ay~~~~~~~~fipm~Gr~g~~  549 (834)
T KOG2194|consen  474 IIMTYYGIRSAYLPLLLLLFYVISYL-LNTLTILHLCGTLYLITLLICQVGPFL---FAAYSTYSLVRTFIPMMGRFGNA  549 (834)
T ss_pred             HHheecccchhHHHHHHHHHHHHHHH-HhhceeeccCCceeeeeeeeeehHhHH---HHHHHHHHHHHeeeccccccCCC
Confidence            99999999999999999999999998 56889999999988886    999999   9999999999999999      6


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhhhhhc
Q 007484          575 LASQVICPAVFVASDCACLGALITVLS  601 (602)
Q Consensus       575 ~~pd~~ia~~~~~~~~~~~g~~~p~~~  601 (602)
                      +|||.+||.++++++.++++|++|++.
T Consensus       550 ~nPd~~i~~~~~~~~~l~~~f~i~l~~  576 (834)
T KOG2194|consen  550 SNPDLSISFLNAFGANLIVGFLIPLVH  576 (834)
T ss_pred             CCchHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999999999985

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2234 Iap Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis Back     alignment and domain information
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only] Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only] Back     alignment and domain information
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] Back     alignment and domain information
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins Back     alignment and domain information
>PRK02256 putative aminopeptidase 1; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
3b3t_A291 Crystal Structure Of The D118n Mutant Of The Aminop 2e-05
3b35_A291 Crystal Structure Of The M180a Mutant Of The Aminop 3e-05
1cp6_A291 1-Butaneboronic Acid Binding To Aeromonas Proteolyt 3e-05
1igb_A291 Aeromonas Proteolytica Aminopeptidase Complexed Wit 3e-05
3b3v_A291 Crystal Structure Of The S228a Mutant Of The Aminop 3e-05
1rtq_A299 The 0.95 Angstrom Resolution Crystal Structure Of T 3e-05
2anp_A291 Functional Glutamate 151 To Histidine Mutant Of The 1e-04
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The Aminopeptidase From Vibrio Proteolyticus Length = 291 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 124 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 175
           GY N  ++VM I  T S+  D  +++ GH D  + S        PGA D  S +A++ E+
Sbjct: 72  GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDNASGIAAVTEV 128
Query: 176 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 213
            R+  ++ + P R I F+   AEE+ + G+      +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The Aminopeptidase From Vibrio Proteolyticus Length = 291 Back     alignment and structure
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica Aminopeptidase Length = 291 Back     alignment and structure
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate Length = 291 Back     alignment and structure
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The Aminopeptidase From Vibrio Proteolyticus Length = 291 Back     alignment and structure
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The Aminopeptidase From Aeromonas Proteolytica Length = 299 Back     alignment and structure
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The Aminopeptidase From Aeromonas Proteolytica Length = 291 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 7e-28
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 4e-26
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 1e-21
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 2e-18
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 1e-17
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 2e-17
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 2e-17
3kas_A640 Transferrin receptor protein 1; transferrin recept 2e-16
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 3e-14
3fed_A707 Glutamate carboxypeptidase III; metallopeptidase, 3e-11
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 1e-09
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 6e-09
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 8e-05
3mru_A490 Aminoacyl-histidine dipeptidase; metalloprotease, 3e-04
2qyv_A487 XAA-His dipeptidase; YP_718209.1, structural genom 4e-04
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 6e-04
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314 Back     alignment and structure
 Score =  113 bits (283), Expect = 7e-28
 Identities = 54/318 (16%), Positives = 95/318 (29%), Gaps = 59/318 (18%)

Query: 43  DSDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIE 102
                   F    A Q+++V AD  G R       +E   Y+  QLE        KF  +
Sbjct: 16  KEVIKAPEFDADSAYQYIQVQAD-FGPRVPNTQAHKECGEYLAGQLE--------KFGAK 66

Query: 103 IEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFD-------- 154
           +                +         NI+        +     +L   H+D        
Sbjct: 67  VYNQ--------YADLIAYDGTILKSRNIIGAY---KPESKKRILLC-AHWDSRPYADND 114

Query: 155 -----GPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFM------- 202
                      G  D  S V  +LE+AR        P   I  +F  +E+  +       
Sbjct: 115 PDPKNHHTPILGVNDGASGVGVLLEIARQI--QKEQPALGIDIVFFDSEDYGIPEFYDGK 172

Query: 203 -------LGAHGFMK-AHKWRDSVGAVINVEASGTGGLDLVCQSGP-SSWPSSVYAQSAI 253
                  LG+  + +  H    +    I ++  G        +     +  S +      
Sbjct: 173 YKQDTWCLGSQYWARTPHVQNYNARYGILLDMVGGKDATFYYEGYSARTARSEMKKIWKK 232

Query: 254 YPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGY-------YYHTSHDTVD 306
                     V        D  I+      IP +DII    G        ++HT +DT++
Sbjct: 233 AHELGYGKYFVKEDGGETVDDHIYVNKLARIPCVDIINYDAGNPQSSFGSFWHTVNDTME 292

Query: 307 RLLPGSVQARGDNLFNVL 324
            +   +++A G  + +V+
Sbjct: 293 NIDRNTLKAVGQTVMDVI 310
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309 Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329 Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330 Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640 Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Length = 444 Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707 Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198 Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Length = 490 Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Length = 487 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 100.0
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 100.0
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 100.0
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 100.0
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 100.0
3kas_A640 Transferrin receptor protein 1; transferrin recept 100.0
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 100.0
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 100.0
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 100.0
3fed_A707 Glutamate carboxypeptidase III; metallopeptidase, 100.0
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 99.98
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.96
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.95
3k9t_A435 Putative peptidase; structural genomics, joint cen 99.86
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 99.74
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 99.71
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 99.64
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 99.57
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 99.55
2gre_A349 Deblocking aminopeptidase; structural genomi prote 99.53
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 99.53
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 99.48
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 99.48
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 99.45
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 99.43
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 99.41
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 99.39
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 99.37
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 99.36
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 99.35
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 99.32
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 99.31
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 99.29
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 99.29
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 99.29
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 99.28
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 99.26
1fno_A417 Peptidase T; metallo peptidase, protease, hydrolas 99.21
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 99.21
3khx_A492 Putative dipeptidase sacol1801; DAPE, metallopepti 99.2
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 99.19
3mru_A490 Aminoacyl-histidine dipeptidase; metalloprotease, 99.17
3pfe_A472 Succinyl-diaminopimelate desuccinylase; metal bind 99.17
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 99.14
1vho_A346 Endoglucanase; structural genomics, unknown functi 99.14
1ylo_A348 Hypothetical protein SF2450; structural genomics, 99.12
1xmb_A418 IAA-amino acid hydrolase homolog 2; structural gen 99.1
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 99.07
2qyv_A487 XAA-His dipeptidase; YP_718209.1, structural genom 99.07
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 99.05
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 99.05
3ram_A394 HMRA protein; two-domain, catalytic (alpha-beta-al 98.94
2vpu_A354 TET3, 354AA long hypothetical operon protein FRV; 98.82
3io1_A445 Aminobenzoyl-glutamate utilization protein; peptid 98.77
3isx_A343 Endoglucanase; TM1050, structural genomics, joint 98.5
2wzn_A354 TET3, 354AA long hypothetical operon protein FRV; 98.3
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 95.79
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 94.41
3kas_A640 Transferrin receptor protein 1; transferrin recept 87.77
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 87.23
2ijz_A428 Probable M18-family aminopeptidase 2; putative ami 86.08
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=100.00  E-value=1.4e-40  Score=347.02  Aligned_cols=254  Identities=18%  Similarity=0.163  Sum_probs=193.3

Q ss_pred             cCcccHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcccccCCCceeEEEEeeeecCccccccccccccccccc
Q 007484           48 LDRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRN  127 (602)
Q Consensus        48 ~~~Fs~era~~~L~~La~~ig~R~~gS~~~e~a~~yL~~~l~~ig~~~~~~~~vevd~~~~~G~~~~~~~~~~~~~~y~~  127 (602)
                      .++||++||++++++|+ ++|||.+||++++++++||+++|+++|      ++++.+.....+.          ...+.+
T Consensus        19 ~p~f~~~~a~~~l~~l~-~fgpR~~gS~~~~~a~~~i~~~l~~~g------~~v~~q~~~~~~~----------~~~~~~   81 (309)
T 4fuu_A           19 VPQFDADSAYLYVKNQV-DFGPRVPNTKEHVACGNYLAGKLEAFG------AKVTNQYADLIAY----------DGTLLK   81 (309)
T ss_dssp             CCCCCHHHHHHHHHHHH-TTCCCCTTSHHHHHHHHHHHHHHHHTT------CEEEEEEEEEECT----------TSCEEE
T ss_pred             CCccCHHHHHHHHHHHh-CcCCcCCCCHHHHHHHHHHHHHHHHcC------CeeEEEeEEeccC----------CCCcce
Confidence            45899999999999999 799999999999999999999999998      5666654433210          112345


Q ss_pred             cceEEEEEeCCCCCCCCCEEEEeeecCCCCCC-------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 007484          128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-------------PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLF  194 (602)
Q Consensus       128 ~~NVi~~i~g~~~~~~~~~vll~aH~Dsv~~~-------------pGA~D~~sGva~~LE~ar~L~~~~~~p~~~I~flf  194 (602)
                      .+|||++++|+.    ++.|+++|||||++.+             +||+||++|||+|||++|.|.+.  +|+++|+|+|
T Consensus        82 ~~Nii~~~~g~~----~~~i~l~aH~Ds~~~~~~~~~~~~~~~~~~GA~D~aSG~a~lLE~ar~l~~~--~~~~~i~~~~  155 (309)
T 4fuu_A           82 ARNIIGSYKPES----KKRIALFAHWDTRPWADNDADEKNHHTPILGANDGASGVGALLEIARLVNQQ--QPELGIDIIF  155 (309)
T ss_dssp             EEEEEEEESTTC----SSEEEEEEECCCCSCCTTCSSGGGTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEEEEEE
T ss_pred             eEEEEEEECCCC----CceEEEEeecCCCCCCCCccccccccCCcCCcccCchhHHHHHHHHHHHhhc--CCCCceEEEe
Confidence            689999999863    4689999999998753             69999999999999999999874  7899999999


Q ss_pred             eCcccCCc--------------cchHHHHhhcC-ccCceeEEEEeccCCCCCCceEEecCCCCC---hhhhhhhhhcccc
Q 007484          195 NGAEELFM--------------LGAHGFMKAHK-WRDSVGAVINVEASGTGGLDLVCQSGPSSW---PSSVYAQSAIYPM  256 (602)
Q Consensus       195 ~~aEE~gl--------------~GS~~f~~~h~-~~~~i~a~INLD~~G~gg~~~lfq~gp~~~---~~~~y~~~~~~p~  256 (602)
                      |++||.|+              .||+.|+++++ +.++++++||+|++|.+++.+..+.....+   +.+...+......
T Consensus       156 ~~~EE~Gl~~~~~~~~~~~~~l~GS~~~~~~~~~~~~~i~~~inlDmvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
T 4fuu_A          156 LDAEDYGTPQFYEGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLDMVGGENSVFLKEGYSEEFAPDINKKVWKAAKKAG  235 (309)
T ss_dssp             ECSSSCCCCTTCCSCCCGGGSCHHHHHHHHSCSSTTCCCSEEEEECSCCBTTCCEEECHHHHHHCHHHHHHHHHHHHHTT
T ss_pred             ecccccCccccccchhhhhhhhcchhHHHhcccccCcceEEEEeeeccCCCCCceEeecCchhhhHHHHHHHHHHHHhcC
Confidence            99999995              89999998763 458999999999999988776655432211   1111111111110


Q ss_pred             cccccccccCCCCCCCchHHHhhcCCCCcEEEEEeecC----CCcCCCcccccCCCCHHHHHHHHHHHHHHHHH
Q 007484          257 AHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIG----GYYYHTSHDTVDRLLPGSVQARGDNLFNVLKA  326 (602)
Q Consensus       257 ~~~~~~e~f~~ips~tD~~~F~~~~~GIPgld~a~~~~----~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~  326 (602)
                      ......+. ......+||.+|.+ .+|||++++.....    .++|||+.||+|+||+++||++|+++++++.+
T Consensus       236 ~~~~~~~~-~~~~~~sDh~~F~~-~~GIP~l~~~~~~~~~~~~~~yHT~~Dt~d~id~~~L~~vg~~vl~~ly~  307 (309)
T 4fuu_A          236 YGKTFIDE-RGDTITDDHLFINR-LARIKTIDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYN  307 (309)
T ss_dssp             CTTTEEEE-ECCCCCCHHHHHHH-HTCCCEEEECBC----CCCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred             Cccccccc-CCCCCCCChHHHHh-cCCCCEEEEeccCCCCCCCCCCCCcccchhhCCHHHHHHHHHHHHHHHhh
Confidence            00000000 11223689999985 47999999876432    34899999999999999999999999999863
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} Back     alignment and structure
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 602
d2afwa1329 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf 4e-26
d1de4c3294 c.56.5.5 (C:122-189,C:383-608) Transferrin recepto 5e-26
d1rtqa_291 c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti 1e-22
d3bi1a3304 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep 3e-21
d1fnoa4295 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti 1e-14
d1tkja1277 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr 1e-14
d1cg2a1276 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, 9e-12
g1q7l.1280 c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain 4e-07
d1lfwa1272 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV { 4e-06
d1vhea2275 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein Y 5e-06
d2grea2233 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid 2e-05
d2fvga2255 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 { 6e-05
d1y0ya2255 c.56.5.4 (A:164-351,A:6-72) Frv operon protein Frv 4e-04
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 4e-26
 Identities = 45/299 (15%), Positives = 86/299 (28%), Gaps = 64/299 (21%)

Query: 63  LADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSIS 122
           L   + +R  G PG   A  +I  +++          R++ +  +   +F          
Sbjct: 38  LQPLLIERYPGSPGSYAARQHIMQRIQ----------RLQADWVLEIDTFL-----SQTP 82

Query: 123 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-------PGAGDCGSCVASMLEL 175
            GYR+ +NI+  ++          +++  H+D    S        GA D     A MLEL
Sbjct: 83  YGYRSFSNIISTLNP----TAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLEL 138

Query: 176 AR--------LTIDSGWIPPRPIIFLFNGAEEL--------FMLGAHGFMKAHKWR---- 215
           AR        L   S   P   +  +F   EE          + G+              
Sbjct: 139 ARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPP 198

Query: 216 --------DSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQ--SAIYPMAHSAAQDVF 265
                     +  ++ ++  G            S+            ++ +       + 
Sbjct: 199 GARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLE 258

Query: 266 --PVIPGDTDYRIFSQDYG-----DIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARG 317
                       I   D+       +P L +I       +HT  D  + L   ++    
Sbjct: 259 GRYFQNYSYGGVIQD-DHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLN 316
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295 Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277 Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 276 Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 272 Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Length = 275 Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233 Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Length = 255 Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 100.0
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 100.0
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 100.0
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 100.0
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 100.0
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 99.81
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 99.8
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 99.77
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 99.77
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 99.69
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 99.68
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 99.68
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 99.67
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 99.6
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 99.57
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 99.41
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 99.3
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 98.57
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 98.22
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 98.13
d1y7ea2322 Probable aminopeptidase ApeA {Borrelia burgdorferi 94.47
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 91.52
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=100.00  E-value=1.3e-38  Score=325.17  Aligned_cols=248  Identities=20%  Similarity=0.311  Sum_probs=199.0

Q ss_pred             CcccHHHHHHHHHHHHH----hcCCCCCCChhHHHHHHHHHHHHhcccccCCCceeEEEEeeeecCcccccccccccccc
Q 007484           49 DRFSEARAIQHVRVLAD----EIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG  124 (602)
Q Consensus        49 ~~Fs~era~~~L~~La~----~ig~R~~gS~~~e~a~~yL~~~l~~ig~~~~~~~~vevd~~~~~G~~~~~~~~~~~~~~  124 (602)
                      ++++.++++++|.+|+.    +.|+|..||++++++++||.++|+++|      +++++++....+              
T Consensus         2 p~i~~~~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G------~~~~~~~~~~~~--------------   61 (277)
T d1tkja1           2 PDIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAG------YTTTLQQFTSGG--------------   61 (277)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHT------CEEEEEEEEETT--------------
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCC------CeEEEEeeeccC--------------
Confidence            47899999999999963    578999999999999999999999999      677776654322              


Q ss_pred             ccccceEEEEEeCCCCCCCCCEEEEeeecCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccc
Q 007484          125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLG  204 (602)
Q Consensus       125 y~~~~NVi~~i~g~~~~~~~~~vll~aH~Dsv~~~pGA~D~~sGva~~LE~ar~L~~~~~~p~~~I~flf~~aEE~gl~G  204 (602)
                       .+..||+++++|++   +++.|++++||||++.+|||.||++|||++||++|.|++.+++|+|+|+|+|+++||.|+.|
T Consensus        62 -~~~~Nvi~~~~g~~---~~~~i~~~aH~D~~~~~~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~G  137 (277)
T d1tkja1          62 -ATGYNLIANWPGGD---PNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIG  137 (277)
T ss_dssp             -EEEEEEEEECSCSE---EEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHH
T ss_pred             -ccccCeEEEECCCC---CCCEEEEEccccccccccccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccccc
Confidence             24569999999864   45789999999999999999999999999999999999988899999999999999999999


Q ss_pred             hHHHHhhcCc--cCceeEEEEeccCCCCCCceEEecCCCCChhhhhhhh---hcccccccccccccCCCCCCCchHHHhh
Q 007484          205 AHGFMKAHKW--RDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQS---AIYPMAHSAAQDVFPVIPGDTDYRIFSQ  279 (602)
Q Consensus       205 S~~f~~~h~~--~~~i~a~INLD~~G~gg~~~lfq~gp~~~~~~~y~~~---~~~p~~~~~~~e~f~~ips~tD~~~F~~  279 (602)
                      |+.|+++|++  .+++.++||+|++|.+++....+.+. +...+.+.+.   ...+.      .......+.|||.+|.+
T Consensus       138 s~~~~~~~~~~~~~~i~~~inlD~vG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~SDh~~F~~  210 (277)
T d1tkja1         138 SKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYDDD-PVIEKTFKNYFAGLNVPT------EIETEGDGRSDHAPFKN  210 (277)
T ss_dssp             HHHHHHHSCHHHHTTEEEEEEECCCCCSSCCCEECCSS-HHHHHHHHHHHHHHTCCC------EECCSSTTCSTHHHHHH
T ss_pred             cHHHHHHhhccchhheeeeeccccccCCCCceEEecCC-hHHHHHHHHHHHhcCCCc------ccccCCCCCccchhHHH
Confidence            9999999875  37899999999999887765544332 1222222211   11111      11111234799999986


Q ss_pred             cCCCCcEEEEEeec-------------------CCCcCCCcccccCCCCHHHHHHHHHHHHHHHHHHhC
Q 007484          280 DYGDIPGLDIIFLI-------------------GGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN  329 (602)
Q Consensus       280 ~~~GIPgld~a~~~-------------------~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~  329 (602)
                        .|||.+.+....                   ...+|||+.||+|++|++.+++.++.+.+++..|||
T Consensus       211 --~GIP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~YHt~~Dt~d~l~~~~l~~~~~~v~~~v~~LAn  277 (277)
T d1tkja1         211 --VGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSS  277 (277)
T ss_dssp             --TTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCCCEEEeecCCccccchhhhhhccccccccCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHhC
Confidence              799998763211                   013699999999999999999999999999999886
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure