Citrus Sinensis ID: 007488

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-
MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGYGY
cccccHHHccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccccccEEEEEccccccccccccccccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccHHHHHHHHHHccccccccccHHHcccccccccHHcEccccccHHHHHHHHHcccHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccccc
MASTFTAMSSIssmiapngrmtdkklaSSSNKLSslasissssfgrrQSVALRRartpkiyaakdlhfnkdGYAMKKLQNGVNKLADLvgvtlgpkgrnvvleskygapkivndgVTVAKeveledpvenIGAKLVRQAAAKtndlagdgtTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRkgvvtleegksaENMLYVVEGmqfdrgyispyfvtdseKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAalkapgfgerksqylddiAILTGGTVIRDEVGLALDKVGKEVLGNASkvvltkdtttivgdgstqDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETldndeekvGADIVKRALcyplkliaknagvngSVVSEKVlssdnhkygynaatgnyedlmaagiidptkVVRCCLEHASSVAKTFLMSDCVVVeikepepampagygy
mastftamssissmiapngrMTDKKLASSSNKLSslasissssfgrrqsvalrrartpkiyaakdlhfnkDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVleskygapkivndgvTVAKEVELEDPVENIGAKLVRQAAAKtndlagdgtTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAAlkapgfgerksqYLDDIAILTGGTVIRDEVGLALDKVGkevlgnaskvvltkdtttivgdgstqdavSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGaqtetelkekklRVEDALNATKAaveegivvgggCTLLRLSSKVDAIKEtldndeekvgaDIVKRALCYPLKLiaknagvngsVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKepepampagygy
MASTFTAMSSISSMIAPNGRMTDkklasssnklsslasissssFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAveegivvgggCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGYGY
********************************************************TPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKT**********************VAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA********LNERIAKLSGGVAVIQVGAQTETEL***KLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI*************
************************************************************YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK**EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI*************
********SSISSMIAPNGRM******************************LRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSE************LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGYGY
****************************************************RRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE***********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRxxxxxxxxxxxxxxxxxxxxxERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTxxxxxxxxxxxxxxxxxxxxxVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGYGY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query601 2.2.26 [Sep-21-2011]
P21241588 RuBisCO large subunit-bin N/A no 0.971 0.993 0.872 0.0
P21240600 Chaperonin 60 subunit bet yes no 0.983 0.985 0.862 0.0
C0Z361597 Chaperonin 60 subunit bet no no 0.981 0.988 0.860 0.0
Q9LJE4596 Chaperonin 60 subunit bet no no 0.980 0.988 0.856 0.0
P08927595 RuBisCO large subunit-bin N/A no 0.966 0.976 0.846 0.0
Q43831499 RuBisCO large subunit-bin N/A no 0.820 0.987 0.873 0.0
Q9C667611 Chaperonin 60 subunit bet no no 0.885 0.870 0.682 0.0
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.878 0.979 0.598 1e-178
Q119S1561 60 kDa chaperonin 1 OS=Tr yes no 0.873 0.935 0.6 1e-177
Q3M6L5560 60 kDa chaperonin 2 OS=An yes no 0.883 0.948 0.596 1e-176
>sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function desciption
 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/595 (87%), Positives = 552/595 (92%), Gaps = 11/595 (1%)

Query: 1   MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSV--ALRRARTP 58
           MASTFTA SSI SM+APN   TDKKL    NKLSS      SSFGRRQ+V   LRR+   
Sbjct: 1   MASTFTATSSIGSMVAPNAHKTDKKLM---NKLSS------SSFGRRQNVFPKLRRSSPA 51

Query: 59  KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
            + AAK+LHFNKDG  ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52  VVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111

Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
           A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171

Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
           TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTL
Sbjct: 172 TRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTL 231

Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
           EEGKSAEN LYVVEGMQFDRGY+SPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291

Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
           EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTG 351

Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
            TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAE 411

Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
           QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471

Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNH 538
           TLLRL+SKVDAIK  LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN 
Sbjct: 472 TLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNV 531

Query: 539 KYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 593
           K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP
Sbjct: 532 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.
Brassica napus (taxid: 3708)
>sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 Back     alignment and function description
>sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 Back     alignment and function description
>sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 Back     alignment and function description
>sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|Q3M6L5|CH602_ANAVT 60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query601
255564820605 rubisco subunit binding-protein beta sub 0.993 0.986 0.908 0.0
224073124607 predicted protein [Populus trichocarpa] 1.0 0.990 0.894 0.0
449452644608 PREDICTED: ruBisCO large subunit-binding 0.998 0.986 0.891 0.0
449493562608 PREDICTED: LOW QUALITY PROTEIN: ruBisCO 0.998 0.986 0.891 0.0
224052861607 predicted protein [Populus trichocarpa] 1.0 0.990 0.883 0.0
225435794608 PREDICTED: ruBisCO large subunit-binding 1.0 0.988 0.898 0.0
297853250600 CPN60B [Arabidopsis lyrata subsp. lyrata 0.983 0.985 0.867 0.0
1762130599 chaperonin-60 beta subunit [Solanum tube 0.985 0.988 0.863 0.0
134104588 RecName: Full=RuBisCO large subunit-bind 0.971 0.993 0.872 0.0
225442531609 PREDICTED: ruBisCO large subunit-binding 0.998 0.985 0.849 0.0
>gi|255564820|ref|XP_002523404.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223537354|gb|EEF38983.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1094 bits (2830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/609 (90%), Positives = 581/609 (95%), Gaps = 12/609 (1%)

Query: 1   MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
           MASTFTAMSS+ S++APN    DKK AS+SN+LSS ASIS S+FGRRQ+V LRR+R+PKI
Sbjct: 1   MASTFTAMSSVGSLVAPN---VDKKFASTSNRLSSFASISGSAFGRRQNVVLRRSRSPKI 57

Query: 61  YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
            A AKDLHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 58  CAMAKDLHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 117

Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
           KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 118 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 177

Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
           RGIEKTSKALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMS+VGRKGVVTLE
Sbjct: 178 RGIEKTSKALVTELKSMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSRVGRKGVVTLE 237

Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
           EGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 238 EGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 297

Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
           DAIRG YPIL+IAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 298 DAIRGGYPILVIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 357

Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
           TV+R+EVGL+LDKVGKE+LGNASKVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQ
Sbjct: 358 TVVREEVGLSLDKVGKEILGNASKVVLTKDTTTIVGDGSTQEAVTKRVAQIRNLIEAAEQ 417

Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
           DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 418 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 477

Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK 539
           LLRL+SKVDAIK++LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN +
Sbjct: 478 LLRLASKVDAIKDSLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPR 537

Query: 540 YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-- 597
           +GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE A+PA  
Sbjct: 538 FGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-AVPAGN 596

Query: 598 -----GYGY 601
                GYGY
Sbjct: 597 PMDNSGYGY 605

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224073124|ref|XP_002303983.1| predicted protein [Populus trichocarpa] gi|222841415|gb|EEE78962.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452644|ref|XP_004144069.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493562|ref|XP_004159350.1| PREDICTED: LOW QUALITY PROTEIN: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224052861|ref|XP_002297617.1| predicted protein [Populus trichocarpa] gi|118486341|gb|ABK95011.1| unknown [Populus trichocarpa] gi|222844875|gb|EEE82422.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435794|ref|XP_002285746.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297746501|emb|CBI16557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297853250|ref|XP_002894506.1| CPN60B [Arabidopsis lyrata subsp. lyrata] gi|297340348|gb|EFH70765.1| CPN60B [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|1762130|gb|AAB39827.1| chaperonin-60 beta subunit [Solanum tuberosum] Back     alignment and taxonomy information
>gi|134104|sp|P21241.1|RUBB_BRANA RecName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; AltName: Full=60 kDa chaperonin subunit beta; AltName: Full=CPN-60 beta; Flags: Precursor gi|167117|gb|AAA32980.1| 60-kDa beta-polypeptide of plastid chaperonin-60 precursor [Brassica napus] Back     alignment and taxonomy information
>gi|225442531|ref|XP_002284134.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297743227|emb|CBI36094.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query601
TAIR|locus:2193839600 CPN60B "chaperonin 60 beta" [A 0.985 0.986 0.834 8.5e-255
TAIR|locus:2092825596 Cpn60beta2 "chaperonin-60beta2 0.975 0.983 0.832 4.2e-253
TAIR|locus:2028751611 Cpn60beta4 "chaperonin-60beta4 0.885 0.870 0.665 2.5e-191
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.885 0.963 0.524 9.3e-146
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.883 0.981 0.540 3.2e-145
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.885 0.977 0.536 2e-143
UNIPROTKB|Q9KNR7544 groL1 "60 kDa chaperonin 1" [V 0.888 0.981 0.529 2.1e-141
TIGR_CMR|VC_2664544 VC_2664 "chaperonin, 60 Kd sub 0.888 0.981 0.529 2.1e-141
TIGR_CMR|SPO_0887546 SPO_0887 "chaperonin, 60 kDa" 0.885 0.974 0.530 8e-140
TIGR_CMR|CHY_0807540 CHY_0807 "chaperonin GroL" [Ca 0.881 0.981 0.526 2.1e-139
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2453 (868.6 bits), Expect = 8.5e-255, P = 8.5e-255
 Identities = 508/609 (83%), Positives = 539/609 (88%)

Query:     1 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK- 59
             MASTFTA SSI SM+APNG  +D                    FGRRQSV  R  R+   
Sbjct:     1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSA 51

Query:    60 -IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
              + AAK+LHFNKDG  +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct:    52 IVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111

Query:   119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
             A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct:   112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171

Query:   179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
             TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct:   172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231

Query:   239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
             EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct:   232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291

Query:   299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
             EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct:   292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351

Query:   359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
              TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct:   352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411

Query:   419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXC 478
             QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          C
Sbjct:   412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471

Query:   479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNH 538
             TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN 
Sbjct:   472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNV 531

Query:   539 KYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM--- 595
             K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP     
Sbjct:   532 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGN 591

Query:   596 P---AGYGY 601
             P   +GYGY
Sbjct:   592 PMDNSGYGY 600
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;TAS
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0008219 "cell death" evidence=IMP
GO:0009627 "systemic acquired resistance" evidence=IMP
GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA;NAS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0010319 "stromule" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.59840.87850.9795yesno
Q05972CH601_SYNY3No assigned EC number0.55670.88350.9815N/Ano
Q8YVS8CH602_NOSS1No assigned EC number0.59060.88350.9482yesno
Q72AL6CH60_DESVHNo assigned EC number0.54400.87350.9597yesno
A8ERY3CH60_ARCB4No assigned EC number0.54000.87850.9705yesno
B0CFQ6CH601_ACAM1No assigned EC number0.59840.87180.9390yesno
Q7WVY0CH602_ANASLNo assigned EC number0.57000.88350.9533N/Ano
Q0I885CH601_SYNS3No assigned EC number0.54390.87680.9529yesno
P22034CH602_SYNY3No assigned EC number0.57630.86350.9402N/Ano
A0L4C9CH60_MAGSMNo assigned EC number0.54370.88680.9673yesno
B6J4T4CH60_COXB1No assigned EC number0.53900.88180.9601yesno
A7I0W5CH60_CAMHCNo assigned EC number0.55510.87850.9723yesno
Q9LJE4CPNB2_ARATHNo assigned EC number0.85690.98000.9882nono
Q119S1CH601_TRIEINo assigned EC number0.60.87350.9358yesno
Q93GW2CH60_WOLRENo assigned EC number0.54560.87850.9652N/Ano
Q7MBB4CH602_GLOVINo assigned EC number0.59040.86850.9439yesno
Q3SQS3CH601_NITWNNo assigned EC number0.53500.89010.9870yesno
Q3AZK3CH601_SYNS9No assigned EC number0.54100.88350.9761yesno
Q30YH6CH60_DESDGNo assigned EC number0.54350.88510.9708yesno
B6J2I0CH60_COXB2No assigned EC number0.53900.88180.9601yesno
P19421CH60_COXBUNo assigned EC number0.53900.88180.9601yesno
A1VCQ0CH60_DESVVNo assigned EC number0.54400.87350.9597yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.59620.88350.9482yesno
Q5N3T6CH602_SYNP6No assigned EC number0.57460.88510.9585yesno
Q2JXD4CH601_SYNJANo assigned EC number0.59210.88180.9778yesno
P0A338CH602_THEVLNo assigned EC number0.58870.88350.9779N/Ano
P0A337CH602_THEEBNo assigned EC number0.58870.88350.9779yesno
Q2RY28CH601_RHORTNo assigned EC number0.52950.89350.9889yesno
O50323CH601_THEVLNo assigned EC number0.53800.88850.9798N/Ano
A9NA82CH60_COXBRNo assigned EC number0.53900.88180.9601yesno
Q7V643CH601_PROMMNo assigned EC number0.53830.87680.9310yesno
P21241RUBB_BRANANo assigned EC number0.87220.97170.9931N/Ano
P21240CPNB1_ARATHNo assigned EC number0.86220.98330.985yesno
Q11DQ8CH602_MESSBNo assigned EC number0.53130.89010.9870yesno
B9L698CH60_NAUPANo assigned EC number0.55470.88010.9706yesno
A9KC15CH60_COXBNNo assigned EC number0.53900.88180.9601yesno
Q43831RUBB_SECCENo assigned EC number0.87370.82020.9879N/Ano
P08927RUBB_PEANo assigned EC number0.84640.96670.9764N/Ano
C0Z361CPNB3_ARATHNo assigned EC number0.86010.98160.9882nono
Q7MAE3CH60_WOLSUNo assigned EC number0.54290.88010.9688yesno
A8F401CH60_THELTNo assigned EC number0.54520.88510.9870yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_III2625
hypothetical protein (607 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2088.1
hypothetical protein (955 aa)
      • 0.563
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.526
estExt_fgenesh4_pm.C_LG_I0780
hypothetical protein (97 aa)
•     • 0.524
estExt_Genewise1_v1.C_LG_VIII0130
hypothetical protein (97 aa)
•     • 0.519
estExt_fgenesh4_pg.C_LG_X1007
hypothetical protein (97 aa)
•     • 0.495
estExt_Genewise1_v1.C_LG_XVIII0619
hypothetical protein (258 aa)
• ••  • 0.490
estExt_fgenesh4_pm.C_LG_IX0449
SubName- Full=Putative uncharacterized protein; (97 aa)
•     • 0.480
estExt_Genewise1_v1.C_280199
SubName- Full=Putative uncharacterized protein; (256 aa)
• ••  • 0.480
rps3
RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa)
  •     0.433
grail3.3134000101
Predicted protein (100 aa)
      • 0.429

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
CHL00093529 CHL00093, groEL, chaperonin GroEL 0.0
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 0.0
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-173
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-163
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-127
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-113
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 6e-31
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-16
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 8e-15
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 2e-14
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 6e-13
cd03343517 cd03343, cpn60, cpn60 chaperonin family 3e-12
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 3e-11
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-10
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 2e-10
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 8e-10
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-09
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-09
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-09
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 3e-09
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 8e-07
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-06
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-05
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-05
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-05
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-05
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 7e-05
cd03343517 cd03343, cpn60, cpn60 chaperonin family 2e-04
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 7e-04
PRK11820288 PRK11820, PRK11820, hypothetical protein; Provisio 0.004
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
 Score = 1051 bits (2718), Expect = 0.0
 Identities = 538/607 (88%), Positives = 569/607 (93%), Gaps = 13/607 (2%)

Query: 1   MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
           MASTFTA SS+ S+ APNG         S N+LSS ASISSSSFGRRQSV LRR+R+PK+
Sbjct: 1   MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKV 53

Query: 61  YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
            AAK+LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 54  KAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 113

Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
           EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPV ITR
Sbjct: 114 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173

Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
           GIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 174 GIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233

Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
           GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKKITNARDLI +LED
Sbjct: 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILED 293

Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
           AIRG YP+LIIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 294 AIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGT 353

Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
           VIR+EVGL+LDKVGKEVLG A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQI+ LIE AEQD
Sbjct: 354 VIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQD 413

Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
           YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 414 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473

Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540
           LRL+SKVDAIK+TL+NDE+KVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+
Sbjct: 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKF 533

Query: 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA---MP- 596
           GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFL SDCVVVEIKEPEP     P 
Sbjct: 534 GYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNPM 593

Query: 597 --AGYGY 601
             +GYGY
Sbjct: 594 DNSGYGY 600

Length = 600
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|236993 PRK11820, PRK11820, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 601
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.95
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.93
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.07
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 96.77
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.2e-119  Score=1009.75  Aligned_cols=586  Identities=91%  Similarity=1.247  Sum_probs=556.6

Q ss_pred             CcccccccccccccccCCCcccchhcccccccccccccccccccccccccccccccccccccccccccCCcHHHHHHHHH
Q 007488            1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQN   80 (601)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~f~~~~~~~~~~~~   80 (601)
                      |||++.+.++.++..++...       ++.+.++|...++..+|+++++.+.+++..++..++|+|+||.+.++|+.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ar~~l~~   73 (600)
T PLN03167          1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKVKAAKELHFNKDGSAIKKLQA   73 (600)
T ss_pred             CcchhhhhhhhcCccccccc-------ccccccccccccccccccccccccccccCCchhhhcceeecCCcHHHHHHHHH
Confidence            88998888888888877544       45577888888899999776666666666677767999999933379999999


Q ss_pred             HHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCcccHHHHHHHH
Q 007488           81 GVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG  160 (601)
Q Consensus        81 ~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTTt~vvLa~~  160 (601)
                      ||+.|+++|++||||+||||||++++|+|+|||||+||+|+|+++||++|+||+||+++|++||+++||||||++||+++
T Consensus        74 g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~  153 (600)
T PLN03167         74 GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG  153 (600)
T ss_pred             HHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHhhcCChhHHHHHHHHHHHhhccCCceEEec
Q 007488          161 LIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE  240 (601)
Q Consensus       161 Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~~~~ls~li~eAi~~vg~~g~I~i~~  240 (601)
                      ||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+|.++|++|+++++.|++|+++|+.+++++|.|.+++
T Consensus       154 LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~  233 (600)
T PLN03167        154 LIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE  233 (600)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEecc
Confidence            99999999999999999999999999999999999999997668999999999999999999999999999999999999


Q ss_pred             CCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHHHHhcCCCEEEEcccccHHHH
Q 007488          241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEAL  320 (601)
Q Consensus       241 G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~~~~~~~~lvI~a~~I~~~aL  320 (601)
                      |++++|++++++|++|+++|.+|||++++++|+++++||+|+++|++|++++++.++++.+.+.|+||||++++|++++|
T Consensus       234 g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL  313 (600)
T PLN03167        234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEAL  313 (600)
T ss_pred             CCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHH
Confidence            99999998999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEecCeEEEEcCCCCh
Q 007488          321 ATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQ  400 (601)
Q Consensus       321 ~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~~~~~~  400 (601)
                      ++|+.|+++|.++|++||+|+||+.++++|+|||++|||++++++.|++++++++++||+|++|++.+++++++++.+++
T Consensus       314 ~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~  393 (600)
T PLN03167        314 ATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQ  393 (600)
T ss_pred             HHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccH
Confidence            99999999999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcCccccccHHH
Q 007488          401 DAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL  480 (601)
Q Consensus       401 ~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvvpGGGa~e  480 (601)
                      +.+++|+.+|+.+++.+.++|++++|++|+++|++++++|+|||+|+.+++|+||+++||++++|+|+++|+|||||++|
T Consensus       394 ~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~e  473 (600)
T PLN03167        394 EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL  473 (600)
T ss_pred             HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCeeeEecCCCcccchhhcccccc
Q 007488          481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDP  560 (601)
Q Consensus       481 ~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~Gid~~~g~i~d~~e~gI~Dp  560 (601)
                      ++|+.+|++++..+++.+|+.+++++++||+.||++||+|||+|+.+++++|+.++++++|||+.+|++.||++.|||||
T Consensus       474 l~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp  553 (600)
T PLN03167        474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDP  553 (600)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeec
Confidence            99999999998878899998889999999999999999999999999999998666788999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHchhHHHhCCCCCCC
Q 007488          561 TKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP  593 (601)
Q Consensus       561 ~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~  593 (601)
                      +.||+++|++|+++|++||++|++|+.+|++++
T Consensus       554 ~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~  586 (600)
T PLN03167        554 TKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEP  586 (600)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence            999999999999999999999999998876544

>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-151
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-148
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-148
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-148
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-148
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-147
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-147
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-147
1ss8_A524 Groel Length = 524 1e-147
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-147
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-146
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-146
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-146
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-146
1oel_A547 Conformational Variability In The Refined Structure 1e-146
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-146
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-144
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-131
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 5e-59
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-57
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 6e-57
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 7e-57
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 2e-56
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 3e-44
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 1e-43
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 4e-43
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 2e-41
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-12
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-11
1a6d_A545 Thermosome From T. Acidophilum Length = 545 3e-10
1a6d_B543 Thermosome From T. Acidophilum Length = 543 4e-10
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-10
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-10
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 7e-10
3izh_A513 Mm-Cpn D386a With Atp Length = 513 8e-10
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 8e-10
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 9e-10
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 9e-10
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 9e-10
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-09
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 4e-09
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-08
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-08
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-07
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-07
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-07
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-07
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-07
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-06
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-06
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-06
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-05
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-05
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 3e-04
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-04
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  533 bits (1373), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/540 (52%), Positives = 387/540 (71%), Gaps = 6/540 (1%)
Query: 63  AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
           AK L F  D  A + L+ GVN +A+ V VTLGP+GRNVVLE K+G+P I  DGVTVAKEV
Sbjct: 2   AKILVF--DEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEV 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
           ELED +ENIGA+L+++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 60  ELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
           EK  +A V ++K ++  VED + + +VA +SA N+ EVG +IA+AM KVG++G++T+EE 
Sbjct: 120 EKAVEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
           KS E  L  VEG QFD+GYISPYFVT+ E M    E+  +L+V+KK++N R+L+ +LE  
Sbjct: 179 KSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
            +   P+LIIAED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTV
Sbjct: 239 AQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
           I +E+G  L+     +LG A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y
Sbjct: 299 ISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLL 481
            REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AA           TLL
Sbjct: 359 AREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKY 540
           R  S V+ + + L+ D E  GA IV+RAL  P + IA+NAG  GSV+ +++L+ + N +Y
Sbjct: 419 RAISAVEELIKKLEGD-EATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRY 477
Query: 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGYG 600
           G+NAATG + D++ AGI+DP KV R  L++A+S+    L ++ VV E  E + + PA  G
Sbjct: 478 GFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPASAG 537
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 2e-96
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 2e-95
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-69
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 2e-23
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 2e-21
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 2e-21
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 7e-21
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 2e-20
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 3e-20
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 5e-20
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 6e-20
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 7e-20
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 9e-20
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-19
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 4e-19
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 8e-19
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 9e-19
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 7e-18
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 9e-18
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-17
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-17
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 5e-17
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-16
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 2e-16
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  777 bits (2010), Expect = 0.0
 Identities = 288/540 (53%), Positives = 382/540 (70%), Gaps = 6/540 (1%)

Query: 62  AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
           AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E
Sbjct: 1   AAKDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 58

Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
           +ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RG
Sbjct: 59  IELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG 118

Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
           I+K     V ELK +S    DS  +A V  +SA ++  VG +IAEAM KVG++GV+T+E+
Sbjct: 119 IDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVED 178

Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
           G   ++ L VVEGMQFDRGY+SPYF+   E  AVE E+  +LL DKKI+N R+++ VLE 
Sbjct: 179 GTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA 238

Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
             +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGT
Sbjct: 239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGT 298

Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
           VI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  D
Sbjct: 299 VISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSD 358

Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
           Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG+V GGG  L
Sbjct: 359 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVAL 418

Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540
           +R++SK+  ++    N ++ VG  +  RA+  PL+ I  N G   SVV+  V   D + Y
Sbjct: 419 IRVASKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGN-Y 475

Query: 541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGYG 600
           GYNAAT  Y +++  GI+DPTKV R  L++A+SVA   + ++C+V ++ + + A     G
Sbjct: 476 GYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAG 535
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query601
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.85
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.74
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=8.9e-123  Score=1028.79  Aligned_cols=526  Identities=54%  Similarity=0.834  Sum_probs=512.2

Q ss_pred             cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHh
Q 007488           62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA  141 (601)
Q Consensus        62 ~~k~i~f~~~~~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~  141 (601)
                      ++|+|.||  .++|+.+++||+.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+||+||+||+++|+
T Consensus         1 ~~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~   78 (547)
T 1kp8_A            1 AAKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVAS   78 (547)
T ss_dssp             CCEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred             CCcccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHH
Confidence            37999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCcccHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcH-HHHHHHHhhcCChhHHH
Q 007488          142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG  220 (601)
Q Consensus       142 ~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls  220 (601)
                      +||+++||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|+++++|+++. +|.++|++|++++++|+
T Consensus        79 ~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~  158 (547)
T 1kp8_A           79 KANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVG  158 (547)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHH
T ss_pred             hhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999877 99999999999999999


Q ss_pred             HHHHHHHHhhccCCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHH
Q 007488          221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED  300 (601)
Q Consensus       221 ~li~eAi~~vg~~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~  300 (601)
                      +|+++|+.+++++|+|++++|++++|++++++||+|+++|.||||++++++|+++++||+|+++|++|+++++|++++++
T Consensus       159 ~liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~  238 (547)
T 1kp8_A          159 KLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA  238 (547)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHH
T ss_pred             HHHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCEEEEcccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCcee
Q 007488          301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN  380 (601)
Q Consensus       301 ~~~~~~~lvI~a~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~  380 (601)
                      +.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++++|+|||++|||+++++++|++++++++++||+
T Consensus       239 i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~  318 (547)
T 1kp8_A          239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ  318 (547)
T ss_dssp             HHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEE
T ss_pred             HHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEecCeEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHH
Q 007488          381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA  460 (601)
Q Consensus       381 ~~~v~i~~~~~~~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DA  460 (601)
                      |++|+++++++++|++|++++.+++|++||+.+++.++++|++|+|+||+++|++++|||+|||+|+.+++|+||+++||
T Consensus       319 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DA  398 (547)
T 1kp8_A          319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDA  398 (547)
T ss_dssp             EEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred             eeEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCee
Q 007488          461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY  540 (601)
Q Consensus       461 l~a~k~a~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~~~~~~  540 (601)
                      +|++|+++++|+|||||++|++++.+|++++. .++.+ ++++++|++||+.||++||+|||+|+.+++.+|+.. +.++
T Consensus       399 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~~-q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~-~~~~  475 (547)
T 1kp8_A          399 LHATRAAVEEGVVAGGGVALIRVASKLADLRG-QNADQ-NVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG-DGNY  475 (547)
T ss_dssp             HHHHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SSHHH-HHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS-CTTE
T ss_pred             HHHHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cCchH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-CCCE
Confidence            99999999999999999999999999999876 55555 589999999999999999999999999999999875 5789


Q ss_pred             eEecCCCcccchhhcccccchHHHHHHHHHHHHHHHHHHchhHHHhCCCCCC
Q 007488          541 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE  592 (601)
Q Consensus       541 Gid~~~g~i~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~  592 (601)
                      |||+.+|+|.||++.|||||+.||+++|++|+++|++||++|++|..+|+++
T Consensus       476 G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~  527 (547)
T 1kp8_A          476 GYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKND  527 (547)
T ss_dssp             EEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--
T ss_pred             eEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccC
Confidence            9999999999999999999999999999999999999999999999988865
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 601
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 1e-81
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 2e-81
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 2e-78
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 2e-64
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 4e-52
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 7e-28
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 5e-45
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-32
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-44
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 8e-26
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-35
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-16
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-26
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-21
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 4e-25
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-15
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 4e-22
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 1e-04
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 9e-21
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 6e-19
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 2e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 7e-06
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 1e-14
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 2e-12
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-12
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 3e-12
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  252 bits (646), Expect = 1e-81
 Identities = 109/190 (57%), Positives = 138/190 (72%)

Query: 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYP 307
               EGMQFDRGY+SPYF+   E  AVE E+  +LL DKKI+N R+++ VLE   +   P
Sbjct: 4   PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKP 63

Query: 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367
           +LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G
Sbjct: 64  LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 123

Query: 368 LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427
           + L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL 
Sbjct: 124 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 183

Query: 428 ERIAKLSGGV 437
           ER+AKL+GGV
Sbjct: 184 ERVAKLAGGV 193
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query601
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.98
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.96
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.77
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.72
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.71
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.71
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.5
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.32
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.25
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.19
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.21
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.16
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.06
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.14
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.4
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 95.87
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=6e-50  Score=400.63  Aligned_cols=238  Identities=27%  Similarity=0.471  Sum_probs=222.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEeechHHHhccccccCcccchHHHHHHHHHhhcccccCCccc
Q 007488           73 YAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT  152 (601)
Q Consensus        73 ~~~~~~~~~v~~la~~v~sTlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~l~hP~~~~gakLl~~~a~~qd~~~GDGTT  152 (601)
                      ++++.|++++..|+++|++||||+||+|||+++.|+++|||||+||++++.++||.    ++++++++++|++++|||||
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGtt   77 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTT   77 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCCc
Confidence            68899999999999999999999999999999999999999999999999999997    99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHhhcCChhHHHHHHHHHHHhhcc
Q 007488          153 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGR  232 (601)
Q Consensus       153 t~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~~~~ls~li~eAi~~vg~  232 (601)
                      |+++|+++||+++.+++..|+||..|++||+.+.+.+++.|++++.++.                               
T Consensus        78 t~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~-------------------------------  126 (243)
T d1a6db1          78 TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIA-------------------------------  126 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECE-------------------------------
T ss_pred             chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------------
Confidence            9999999999999999999999999999999999999887655432211                               


Q ss_pred             CCceEEecCCcccceeeeeeeeEEeecccCCccccCcccCeeEeeceeEeeecccCCCHHHHHHHHHHHHhcCCCEEEEc
Q 007488          233 KGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA  312 (601)
Q Consensus       233 ~g~I~i~~G~~~~ds~~lv~G~~~~~~~~~p~f~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~~~~~~~~lvI~a  312 (601)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccHHHHHHHHHhhhcccceEEEeecCCcCCcchhHHHHHHHHhCCeEeeccCCccccCCCCCCceeeeEEEEecCeEE
Q 007488          313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTT  392 (601)
Q Consensus       313 ~~I~~~aL~~L~~nk~~g~~~i~aVk~~~~g~~~~~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~  392 (601)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEEccCChhHHHHHHHHHHHHHHHHHHHHhcCc
Q 007488          393 IVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGI  472 (601)
Q Consensus       393 ~i~~~~~~~~i~~r~~~l~~~l~~~~~~~~~~~l~er~a~l~~~~~tI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gv  472 (601)
                                                                                                     +
T Consensus       127 -------------------------------------------------------------------------------~  127 (243)
T d1a6db1         127 -------------------------------------------------------------------------------Y  127 (243)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           1


Q ss_pred             cccccHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCeeeEecCCCcc
Q 007488          473 VVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNY  549 (601)
Q Consensus       473 vpGGGa~e~~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~La~NaG~d~~~vi~kL~~~---~~~~~Gid~~~g~i  549 (601)
                      +||||++|++++..|..+++++++.+| +++++|++||+.||++|++|||+|+.+++.+|+..   ++.++|||..+|++
T Consensus       128 ~~ggGa~e~~~a~~l~~~a~~~~g~~q-~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i  206 (243)
T d1a6db1         128 AAGGGATAAEIAFRLRSYAQKIGGRQQ-LAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEI  206 (243)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHTCSSHH-HHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEE
T ss_pred             ccCCCchhHHHHHHHhhhhhccCCHHH-HHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEE
Confidence            127999999999999999999999887 79999999999999999999999999999999864   46789999999999


Q ss_pred             cchhhcccccchHHHHHHHHHHHHHHHHHHchhHHH
Q 007488          550 EDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVV  585 (601)
Q Consensus       550 ~d~~e~gI~Dp~~vk~~~L~~A~e~a~~lL~iD~iI  585 (601)
                      .||.+.|||||+.||+++|+.|+|+|++|||+|+||
T Consensus       207 ~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~ii  242 (243)
T d1a6db1         207 EDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI  242 (243)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             eehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999987
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure