Citrus Sinensis ID: 007501

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-
MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
cccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccEEEEcccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHccccHHccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHccEEEcccccccccHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHcccccccccccHHHHccccccHHHHccccccc
cccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEEEEccccccccccEEEEEcccccEEEEEEEccccHHHHHHEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcEEcccHHHHHHHHHHcHHHHHcccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEccHHHHHHHccccHHHHccccccHHHHHHHHHcccccccHHHHHHHHHcEEEcccccccccHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHccccHccEEEEHHHHHHccccHHHHHHccccc
MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKynqqygicnkdglaicpgfstthvipfvegepvyrgscrtniggyhITDYLKQLLslkhpqhmtKLTWEKVEDLKmehcyiapdyfseaqLFQKGTKEaehktrcwqlpwvpppteeppseEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFlsdtgyvsRQEIESTLVKLTQSLRKAKGERKVEQAELEKtdasmnekyplihipdnMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEerrlenpeLYVEQMRAKYKELSEKIDQRKrlktngnhtngnntsggvgrgerLNAAQRERMRLLTTAafdrgkgedtfgakdeDWQLYKLMsrdnddddeemDENEAELARISARLqevdptfvpkqesgptqsaaeiprvrpltkedFQIVLgverfrcpeilfrpnwvgidqvgldemtgvsirrlptkdeDLEQRLTSSilmtggcclfpGMSERLEAGIrmirpcgapikvvraldpvldawrGASVyatklqfpqqtfsrmdyYEKGENWLRRYQLQYTL
MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTrcwqlpwvpppteeppseEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTqslrkakgerkveqaelektdasmnekyplIHIPDNMLSLEQLKEKRRQIFLktttegrqrakqkrveeeleqekknqeeeerrlenpelyVEQMRAKYKELSEKIDQrkrlktngnhtngnntsggvgrgERLNAAQRERMRLLTtaafdrgkgedtfgakdedwqLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPtfvpkqesgptqsaaeiprvrpltkedFQIVLGVErfrcpeilfrpnwvgidqvgldemtgvsirrlptkdedLEQRLTssilmtggCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVyatklqfpqqtfsrMDYYEKGENWLRRYQLQYTL
MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVpppteeppseeeiarkaaikerQGQRLREMAEAKRSSRINELENQIHGlefllqqleqveeNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVeeeleqekknqeeeerrlenPELYVEQMRAKYKELSEKIDQRKRLKtngnhtngnntsggvgrgERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRdnddddeemdeneaeLARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
**PFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWV*******************************************NQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV********************************LIHI************************************************************************************************************************************WQLY*******************************************************LTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPT****LEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ***
*FPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEA*************TRCWQLPWVPPPTEEP*************************************QIHGLEFLL*****************TGYVSRQEIESTLVK*****************************YPLIHIPDNMLSL**L**KRRQIFL*************************************LYVEQMR*********************************************************KGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFV********************TKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ*********TRCWQLPWVP************ARKAAIK****************SRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQS***************EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTT*****************************ENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRD*************ELARISARLQEVDPTFV***********AEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT*****EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKA********************KYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTN********************************A*FDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGP******IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFPFHFMFLECMLLSKINMSFLYAITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRxxxxxxxxxxxxxxxxxxxxxxxxDIAAFLSDTGYVSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELYxxxxxxxxxxxxxxxxxxxxxKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDxxxxxxxxxxxxxxxxxxxxxLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query601 2.2.26 [Sep-21-2011]
Q940Z2724 Actin-related protein 5 O yes no 0.955 0.792 0.722 0.0
A2ZP58575 Actin-related protein 5 O yes no 0.880 0.92 0.617 1e-179
A2WKK5575 Actin-related protein 5 O N/A no 0.880 0.92 0.617 1e-179
Q9Y7X8721 Actin-like protein arp5 O yes no 0.905 0.754 0.279 2e-54
P53946755 Actin-related protein 5 O yes no 0.930 0.740 0.271 1e-49
Q54E71684 Actin-related protein 5 O yes no 0.856 0.752 0.288 6e-47
Q9VEC3648 Actin-related protein 5 O yes no 0.810 0.751 0.264 1e-44
Q17GZ9655 Actin-related protein 5 O N/A no 0.442 0.406 0.304 5e-30
Q293V2651 Actin-related protein 5 O yes no 0.346 0.319 0.326 5e-23
P30164376 Actin-1 OS=Pisum sativum N/A no 0.207 0.332 0.351 8e-18
>sp|Q940Z2|ARP5_ARATH Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2 Back     alignment and function desciption
 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/576 (72%), Positives = 504/576 (87%), Gaps = 2/576 (0%)

Query: 26  TAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT 85
            AFGVDAAFSYKYNQ +GIC KDG+ +CPGF+TTH IPFV+GEP+Y+GS RTNIGGYH+T
Sbjct: 148 VAFGVDAAFSYKYNQLHGICKKDGIVLCPGFTTTHSIPFVDGEPIYKGSSRTNIGGYHVT 207

Query: 86  DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQL 145
           DYLKQLLSLK+P H ++ TWEK EDLK+EHCYIAPDY SE +LFQ+G KEAE KT  WQL
Sbjct: 208 DYLKQLLSLKYPFHSSRFTWEKAEDLKLEHCYIAPDYASEIRLFQEGRKEAEEKTSYWQL 267

Query: 146 PWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLE 205
           PW+PPPTE PPSEEEIARKAAI+E+QGQRLREMAEAKR S+IN++ENQ+  L FLL+Q++
Sbjct: 268 PWIPPPTEVPPSEEEIARKAAIREKQGQRLREMAEAKRVSKINDMENQLISLRFLLKQVD 327

Query: 206 QVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMN-EKYP 264
           QVEE+DI  FLSDTGY SRQE+EST+ K+TQSLRKA+GE K E AE E+   S+N EKYP
Sbjct: 328 QVEEDDIPTFLSDTGYASRQELESTITKVTQSLRKARGEPKNEPAEYEENPDSLNNEKYP 387

Query: 265 LIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPE 324
           L+++PD++L+ EQLK+K+RQ+FLKTT EGR RA+QKR EEELE+EK+NQ EEERR ENPE
Sbjct: 388 LMNVPDDILTPEQLKDKKRQMFLKTTAEGRLRARQKRNEEELEKEKRNQLEEERRRENPE 447

Query: 325 LYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAA 384
            Y+E+++A+YKE+ E+++Q+KRLKTNG+ +NGNN SGG+GRGERL+AAQRERMRLLTTAA
Sbjct: 448 SYLEELQAQYKEVLERVEQKKRLKTNGS-SNGNNKSGGIGRGERLSAAQRERMRLLTTAA 506

Query: 385 FDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQE 444
           FDRGKGEDTFG++DEDWQLYKLMS+DNDDDDE+ D +EAELAR+S+RLQE+DPTFV K E
Sbjct: 507 FDRGKGEDTFGSRDEDWQLYKLMSKDNDDDDEQPDSDEAELARLSSRLQEIDPTFVQKVE 566

Query: 445 SGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRL 504
              +Q++ E+PRVRPLT+ED++IV+G+ERFRCPEILF PN +GIDQVGLDEM G SIRRL
Sbjct: 567 GELSQTSGEVPRVRPLTEEDYKIVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRL 626

Query: 505 PTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRG 564
           P  +++LE+RLTSSILMTGGC L PGM+ERLE GIRMIRPCG+PI VVRA+DPVLDAWRG
Sbjct: 627 PHDEKELEERLTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRG 686

Query: 565 ASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 600
           AS +A  L F    F++MDY EKGE+WLR YQ++Y 
Sbjct: 687 ASAFAANLNFLGNAFTKMDYDEKGEDWLRNYQIRYN 722
Probable subunit of a chromatin-remodeling complex. Involved in DNA repair. Required for multicellular development of all organs.
Arabidopsis thaliana (taxid: 3702)
>sp|A2ZP58|ARP5_ORYSJ Actin-related protein 5 OS=Oryza sativa subsp. japonica GN=ARP5 PE=3 SV=2 Back     alignment and function description
>sp|A2WKK5|ARP5_ORYSI Actin-related protein 5 OS=Oryza sativa subsp. indica GN=ARP5 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y7X8|ARP5_SCHPO Actin-like protein arp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arp5 PE=1 SV=1 Back     alignment and function description
>sp|P53946|ARP5_YEAST Actin-related protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARP5 PE=1 SV=1 Back     alignment and function description
>sp|Q54E71|ARP5_DICDI Actin-related protein 5 OS=Dictyostelium discoideum GN=arpE PE=3 SV=1 Back     alignment and function description
>sp|Q9VEC3|ARP5_DROME Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1 Back     alignment and function description
>sp|Q17GZ9|ARP5_AEDAE Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1 Back     alignment and function description
>sp|Q293V2|ARP5_DROPS Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2 Back     alignment and function description
>sp|P30164|ACT1_PEA Actin-1 OS=Pisum sativum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query601
255581531639 conserved hypothetical protein [Ricinus 0.956 0.899 0.783 0.0
225449462 725 PREDICTED: actin-related protein 5 [Viti 0.958 0.794 0.775 0.0
449459898 720 PREDICTED: actin-related protein 5-like 0.950 0.793 0.776 0.0
147775114607 hypothetical protein VITISV_042044 [Viti 0.958 0.948 0.771 0.0
356539858 724 PREDICTED: actin-related protein 5-like 0.955 0.792 0.766 0.0
356539860 730 PREDICTED: actin-related protein 5-like 0.955 0.786 0.766 0.0
356569368 723 PREDICTED: actin-related protein 5-like 0.955 0.793 0.781 0.0
356501069 722 PREDICTED: actin-related protein 5-like 0.955 0.795 0.770 0.0
356501071 728 PREDICTED: actin-related protein 5-like 0.955 0.788 0.770 0.0
15450490590 At3g12380/MQC3.20 [Arabidopsis thaliana] 0.955 0.972 0.722 0.0
>gi|255581531|ref|XP_002531571.1| conserved hypothetical protein [Ricinus communis] gi|223528801|gb|EEF30807.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/587 (78%), Positives = 524/587 (89%), Gaps = 12/587 (2%)

Query: 26  TAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT 85
            AFGVDAAFSYKYNQQ GIC+KDGLAICPGF+TTHVIPF++GEPVY+G CRTNIGG+H+T
Sbjct: 52  VAFGVDAAFSYKYNQQRGICDKDGLAICPGFTTTHVIPFIDGEPVYKGCCRTNIGGFHVT 111

Query: 86  DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQL 145
           DYLKQLLSLK+P HM + TWEKVEDLKMEHCYIAPDY SEA+LFQKGTKEAE KT+CWQL
Sbjct: 112 DYLKQLLSLKYPHHMARFTWEKVEDLKMEHCYIAPDYASEARLFQKGTKEAEDKTKCWQL 171

Query: 146 PWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLE 205
           PWVPPP EEPPSEEE+ARKAA KERQGQRLREMA  K+S+RIN+LENQ+  L+FLLQQLE
Sbjct: 172 PWVPPPVEEPPSEEELARKAAAKERQGQRLREMAVLKKSTRINDLENQLRDLKFLLQQLE 231

Query: 206 QVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELE-KTDASMNEKYP 264
           QVEE++I +FL DTGYVS+QEIES +V+ TQSLRKAKGE K EQAELE K+D+S NE+YP
Sbjct: 232 QVEEDEIPSFLRDTGYVSKQEIESLIVQKTQSLRKAKGEPKAEQAELEEKSDSSTNERYP 291

Query: 265 LIHIPDNMLSLEQ-----------LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQ 313
           L+ IPD+ L+ EQ           LKEK++Q+FL+TT  GRQ+AKQKR EEELE+E+KNQ
Sbjct: 292 LLEIPDDELTSEQACSSFHDVSSQLKEKKKQLFLRTTALGRQQAKQKRREEELERERKNQ 351

Query: 314 EEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 373
            +EE+RLENPELY+E+ RAKYKELSEK++QRKRLKTNGNH+NGNN SGGVGRGERLNAAQ
Sbjct: 352 LDEEKRLENPELYLEETRAKYKELSEKVEQRKRLKTNGNHSNGNNVSGGVGRGERLNAAQ 411

Query: 374 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQ 433
           RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMS+DNDDD E  DE+E ELARIS+RLQ
Sbjct: 412 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDGEGPDEDEVELARISSRLQ 471

Query: 434 EVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGL 493
           E+DPTF+PK + GP+Q A E+P+ RPLTKEDFQ++LGVERFRCPEILF PN VGIDQ GL
Sbjct: 472 EIDPTFIPKPDVGPSQPANEMPKPRPLTKEDFQVLLGVERFRCPEILFHPNLVGIDQAGL 531

Query: 494 DEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVR 553
           DEM GVSIRRLP+K+EDLE+RLT+SI +TGG CL+PGMSERLE+GIRMIRP G+PIKVVR
Sbjct: 532 DEMAGVSIRRLPSKEEDLEKRLTNSIFITGGSCLYPGMSERLESGIRMIRPNGSPIKVVR 591

Query: 554 ALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 600
           ALDPVLDAWRGA+ YA  LQFPQQTFSRMDYYEKGE+WLRRYQ  YT
Sbjct: 592 ALDPVLDAWRGAATYAAALQFPQQTFSRMDYYEKGEDWLRRYQFCYT 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449462|ref|XP_002283252.1| PREDICTED: actin-related protein 5 [Vitis vinifera] gi|296086213|emb|CBI31654.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459898|ref|XP_004147683.1| PREDICTED: actin-related protein 5-like [Cucumis sativus] gi|449503255|ref|XP_004161911.1| PREDICTED: actin-related protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147775114|emb|CAN74904.1| hypothetical protein VITISV_042044 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539858|ref|XP_003538410.1| PREDICTED: actin-related protein 5-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356539860|ref|XP_003538411.1| PREDICTED: actin-related protein 5-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356569368|ref|XP_003552874.1| PREDICTED: actin-related protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356501069|ref|XP_003519351.1| PREDICTED: actin-related protein 5-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356501071|ref|XP_003519352.1| PREDICTED: actin-related protein 5-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|15450490|gb|AAK96538.1| At3g12380/MQC3.20 [Arabidopsis thaliana] gi|24111383|gb|AAN46815.1| At3g12380/MQC3.20 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query601
ASPGD|ASPL0000051593770 AN2487 [Emericella nidulans (t 0.918 0.716 0.271 3.6e-57
POMBASE|SPBC365.10721 arp5 "actin-like protein Arp5" 0.923 0.769 0.249 1.1e-48
SGD|S000005004755 ARP5 "Nuclear actin-related pr 0.707 0.562 0.248 1.6e-45
FB|FBgn0038576648 Arp5 "Actin-related protein 5" 0.347 0.322 0.309 3.8e-42
UNIPROTKB|Q293V2651 Arp5 "Actin-related protein 5" 0.349 0.322 0.329 9.9e-41
DICTYBASE|DDB_G0291728684 arpE "actin related protein 5" 0.509 0.447 0.270 4.7e-40
CGD|CAL0000047776 orf19.504 [Candida albicans (t 0.613 0.475 0.244 3.4e-39
UNIPROTKB|G3N1W1611 ACTR5 "Uncharacterized protein 0.397 0.391 0.264 1.1e-34
UNIPROTKB|F1SDX1608 ACTR5 "Uncharacterized protein 0.407 0.402 0.254 3.9e-34
UNIPROTKB|Q9H9F9607 ACTR5 "Actin-related protein 5 0.264 0.261 0.315 4.2e-34
ASPGD|ASPL0000051593 AN2487 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 158/581 (27%), Positives = 256/581 (44%)

Query:    27 AFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITD 86
             A+G+D+ FSY+YN+       DGL +    ++THVIP +  + +     R N GG H ++
Sbjct:   203 AYGIDSLFSYRYNR-----GTDGLIVDSSHTSTHVIPVLNSKALLSNCSRLNFGGMHASE 257

Query:    87 YLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 146
             YL +L+ LK+P    K+T  ++EDL   HCY++ DY  E   +   T   E +    Q P
Sbjct:   258 YLLKLMRLKYPTFPGKMTEHQMEDLMHNHCYVSKDYDRELSGYLDWTG-LEDRDHVIQYP 316

Query:   147 WVXXXXXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXX 206
             +                        G+RL+E A   R  ++ + E ++            
Sbjct:   317 FTEHIVPEKTEEELARIAERKKES-GRRLQEQAAKMRLEKLMKKEQELEYYKDLQRGLQS 375

Query:   207 XXXNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLI 266
                 +    L          +E  +  L +S+++++ +   +    E+ +AS    +PL+
Sbjct:   376 ETKKEKTRILDAEDLKDEAHLERLIRDLERSIKRSRNK---DLGNEEQEEASEEMSFPLL 432

Query:   267 HIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXXXXXXXXXXXXPELY 326
              +PD  L    LKEKR Q  +K+  + RQRAK+++                     PE +
Sbjct:   433 DVPDEELDEAGLKEKRHQRLMKSNVDARQRAKEEKEREQARKDEELRLDREKRENDPEGW 492

Query:   327 VEQMRAKYKELSEKIDQRKRLKXXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTTAAFD 386
             V + RA+ + L ++I +R R+K                    L A   ++ R        
Sbjct:   493 VAERRAQRQNLLQRIKERDRMKADLGNRKSLASQMRMKTLANLAADGPKKRR-------- 544

Query:   387 RGKGEDTFGAKDEDWQLYKLMSRXXXXXXXXXXXXXXXLARISARLQEVDPTFVPKQ--- 443
             RG  +D FGA DEDW +Y+ ++                L  +   L E DP F       
Sbjct:   545 RGGDDDDFGANDEDWGVYRTVATGEQSDDDEEEDLSGMLDSVERELLEYDPEFTENHTLA 604

Query:   444 -ESGPTQSAAEI------PRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEM 496
              +S  T+S   +      P      +E  QI L VER R PE++F+P+  GIDQ G+ E+
Sbjct:   605 AQSDWTKSLIHVFLRGPWPFDPESQREAHQIHLNVERIRVPEVVFKPSIAGIDQAGIVEI 664

Query:   497 TGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALD 556
                 + +  +  E+ + RL   + +TGG  LF    ER     R   P  A + V RA D
Sbjct:   665 AADIVNQRFSNPEE-QARLLRDVFLTGGNTLFQNFDERFRNDFRACLPLEAQLTVRRASD 723

Query:   557 PVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 597
             P+LDAW+GA+ +A+     + + SR +Y EKG  +L+ + L
Sbjct:   724 PILDAWKGAAQWASGSGLAKSSISREEYLEKGSEYLKEHDL 764
GO:0003674 "molecular_function" evidence=ND
GO:0005829 "cytosol" evidence=IEA
GO:0031011 "Ino80 complex" evidence=IEA
GO:0006338 "chromatin remodeling" evidence=IEA
POMBASE|SPBC365.10 arp5 "actin-like protein Arp5" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000005004 ARP5 "Nuclear actin-related protein involved in chromatin remodeling" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0038576 Arp5 "Actin-related protein 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q293V2 Arp5 "Actin-related protein 5" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291728 arpE "actin related protein 5" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0000047 orf19.504 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|G3N1W1 ACTR5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDX1 ACTR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9F9 ACTR5 "Actin-related protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q940Z2ARP5_ARATHNo assigned EC number0.72220.95500.7928yesno
A2WKK5ARP5_ORYSINo assigned EC number0.61780.88010.92N/Ano
A2ZP58ARP5_ORYSJNo assigned EC number0.61780.88010.92yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018458001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (725 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00024530001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (454 aa)
   ••   0.450
GSVIVG00020181001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (602 aa)
      • 0.436

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
pfam00022367 pfam00022, Actin, Actin 2e-23
smart00268373 smart00268, ACTIN, Actin 4e-23
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 5e-19
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 9e-19
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 1e-16
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 5e-16
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 2e-14
pfam00022367 pfam00022, Actin, Actin 6e-12
smart00268373 smart00268, ACTIN, Actin 2e-11
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 3e-08
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 3e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 4e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 6e-05
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 7e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
COG1293564 COG1293, COG1293, Predicted RNA-binding protein ho 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  102 bits (256), Expect = 2e-23
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 439 FVPKQESGPTQSAAEIPRVRPLTKEDFQ-IVLGVERFRCPEILFRPNWVGIDQVGLDEMT 497
           +V     G T +++  P        D   I+LG ERFR PEILF P+ +G +  G+ E+ 
Sbjct: 211 YVSDDPFGDTAASSSPP-TVSYELPDGYVIILGNERFRVPEILFNPSLIGSESAGIPELI 269

Query: 498 GVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRA-LD 556
             SI        DL   L ++I++TGG  LFPG +ERLE  +  + P G  +K++    +
Sbjct: 270 YDSINACDV---DLRPSLLANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPNE 326

Query: 557 PVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY 595
               AW G S+ A+   F Q   S+ +Y E G + + R 
Sbjct: 327 RKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERK 365

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 601
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 99.85
PRK13930335 rod shape-determining protein MreB; Provisional 99.73
PRK13929335 rod-share determining protein MreBH; Provisional 99.69
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.67
PRK13927334 rod shape-determining protein MreB; Provisional 99.63
PRK13928336 rod shape-determining protein Mbl; Provisional 99.41
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 98.84
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 96.93
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 96.34
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 94.9
PRK15080267 ethanolamine utilization protein EutJ; Provisional 94.9
PRK09472420 ftsA cell division protein FtsA; Reviewed 94.62
PRK13917344 plasmid segregation protein ParM; Provisional 93.5
PRK15080267 ethanolamine utilization protein EutJ; Provisional 93.03
COG1077342 MreB Actin-like ATPase involved in cell morphogene 92.9
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 92.53
COG1077342 MreB Actin-like ATPase involved in cell morphogene 92.04
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 92.01
PRK01433595 hscA chaperone protein HscA; Provisional 89.63
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 89.52
PTZ00400663 DnaK-type molecular chaperone; Provisional 88.92
CHL00094 621 dnaK heat shock protein 70 88.5
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 87.65
PRK09472420 ftsA cell division protein FtsA; Reviewed 87.44
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 87.41
CHL00094621 dnaK heat shock protein 70 86.68
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 86.45
TIGR01991599 HscA Fe-S protein assembly chaperone HscA. The Hea 86.44
PRK05183616 hscA chaperone protein HscA; Provisional 86.0
PRK00290627 dnaK molecular chaperone DnaK; Provisional 85.9
TIGR02350595 prok_dnaK chaperone protein DnaK. Members of this 85.07
PLN03184673 chloroplast Hsp70; Provisional 84.35
PRK13410668 molecular chaperone DnaK; Provisional 84.17
PRK13411 653 molecular chaperone DnaK; Provisional 83.86
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 83.52
PTZ00400 663 DnaK-type molecular chaperone; Provisional 83.19
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 83.05
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 82.75
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 82.64
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 82.09
PF00012602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 81.68
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 80.65
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 80.64
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 80.16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-103  Score=832.71  Aligned_cols=514  Identities=39%  Similarity=0.629  Sum_probs=451.7

Q ss_pred             CCceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCCCCCCcccceeecCCCceeEEeeeCCccccc
Q 007501            2 FPFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYR   72 (601)
Q Consensus         2 ~dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~~~~~ttGLVVD~G~~~T~VvPV~eG~~l~~   72 (601)
                      ++|||||||+.|   ++|+.|+|+|      ++|.||+++++|+|.+-.+.+ ..+||||++||++|||+||++|..+..
T Consensus       115 idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~-~~~~liis~g~~~T~vipvldG~~il~  193 (645)
T KOG0681|consen  115 IDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSS-NKSGLIISMGHSATHVIPVLDGRLILK  193 (645)
T ss_pred             CCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCccc-CcceEEEecCCCcceeEEEecCchhhh
Confidence            699999999999   8999999999      499999999999997543222 348999999999999999999999999


Q ss_pred             CceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCCCC
Q 007501           73 GSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT  152 (601)
Q Consensus        73 a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~~~  152 (601)
                      .++||||||+++++||.+||+.|||.|++.++...++.|++.|||||.||..|+.+|.. +++++.++.++||||++++.
T Consensus       194 ~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-~d~~d~~~~~~qlP~~evl~  272 (645)
T KOG0681|consen  194 DVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-MDYYDENRNYFQLPYTEVLA  272 (645)
T ss_pred             cceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-hhhhhccceEEecccccccc
Confidence            99999999999999999999999999999999999999999999999999999999998 89999999999999997643


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHH
Q 007501          153 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV  232 (601)
Q Consensus       153 ~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~  232 (601)
                      +     +||.++||+|++  +|||++|+-+|.+|+.++|++-                           .|+++|+++ .
T Consensus       273 ~-----~e~~l~Ae~kqe--kRlq~~a~lkrv~k~~~re~~r---------------------------edeqql~~~-~  317 (645)
T KOG0681|consen  273 E-----VELALTAEKKQE--KRLQEQAALKRVEKINARENRR---------------------------EDEQQLESY-N  317 (645)
T ss_pred             h-----hhhhccHHHHHH--HHHHHHHHHhhHHHHHHHHhhh---------------------------hhHHHHHHH-H
Confidence            2     259999999999  9999999999999999987722                           355666666 2


Q ss_pred             HHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHh
Q 007501          233 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKN  312 (601)
Q Consensus       233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~~~  312 (601)
                             |++.....        ....+.+|||++|| +.|+++|+|+|++|++||++++||+|+|.+|++||+      
T Consensus       318 -------kaq~e~e~--------~~D~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~------  375 (645)
T KOG0681|consen  318 -------KAQGEQES--------NLDLEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDARLRARVEKELERL------  375 (645)
T ss_pred             -------Hhhhchhc--------CccHhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHh------
Confidence                   33321110        11133689999999 999999999999999999999999999999955544      


Q ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhc---c--
Q 007501          313 QEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFD---R--  387 (601)
Q Consensus       313 ~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~---~--  387 (601)
                      .+++++|.+|+.+||+++|.++++|++++++++++++++              ++|+|+++|.|||.++.||.+   +  
T Consensus       376 ~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~--------------~~r~s~~Sq~rmr~~~~La~~~~~rrk  441 (645)
T KOG0681|consen  376 NKLEEEREENLISWLEELREKLEKLLERISQKKRLKQEL--------------KDRKSHASQLRMRALARLAYEQVVRRK  441 (645)
T ss_pred             hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhhhhhhhHhhhHHHHhhhHHHHHHHh
Confidence            556677889999999999999999999999999999999              899999999999999999966   2  


Q ss_pred             --CCCCCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCe
Q 007501          388 --GKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDF  465 (601)
Q Consensus       388 --~~~~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~~  465 (601)
                        +...|.|||+|+||+||.++.       +..+.+.+.|..++.+|+++||+|++....... +  .-...+.+...++
T Consensus       442 ~~~~t~D~fg~~Dedw~vYe~le-------e~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d-~--~~~~~p~~~~e~~  511 (645)
T KOG0681|consen  442 RKEATPDNFGARDEDWDVYEDLE-------EENKSILEDLKSLNHELLEFDPHFTQYVEGTTD-P--RNGVLPGFTAEDY  511 (645)
T ss_pred             cccCCccccccchhhHHHHHHhh-------hhhhhHHHHHHHHHHHHHhhCcccccccccccC-c--ccCcchhHHHhhh
Confidence              345888999999999996663       333445678999999999999999987522110 0  0011122346679


Q ss_pred             EEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhCCC
Q 007501          466 QIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC  545 (601)
Q Consensus       466 ~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~p~  545 (601)
                      ++++|+||++||||+|+|+++|.|++||.|++..++.++   |.+.+..|.+||+||||+|++||+.+||.+||..+.|.
T Consensus       512 qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~---p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~  588 (645)
T KOG0681|consen  512 QLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRY---PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPV  588 (645)
T ss_pred             hhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhC---chhhhHhhhhheEeecccccCcCHHHHHHHHhheeccc
Confidence            999999999999999999999999999999999999876   99999999999999999999999999999999999999


Q ss_pred             CCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhhcccCC
Q 007501          546 GAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL  601 (601)
Q Consensus       546 ~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~~~~~~  601 (601)
                      +.+|+|+.+.||.++||.|||.||...+|...||||+||+|+|++++++|+.||+.
T Consensus       589 gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~  644 (645)
T KOG0681|consen  589 GSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIY  644 (645)
T ss_pred             CCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999863

>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 5e-17
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 5e-17
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 5e-17
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 5e-17
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 5e-17
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 6e-17
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 6e-17
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 6e-17
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 7e-17
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 7e-17
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 7e-17
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 7e-17
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 7e-17
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 7e-17
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 7e-17
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 7e-17
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 7e-17
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 8e-17
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 8e-17
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 8e-17
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 8e-17
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 8e-17
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 8e-17
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 8e-17
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 8e-17
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 9e-17
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 9e-17
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-16
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 1e-16
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 1e-16
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 1e-16
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 2e-16
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 3e-16
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 3e-16
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 4e-16
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 5e-16
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 6e-16
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-15
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 2e-15
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 2e-07
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-06
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-06
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 8e-06
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 467 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 526
           I +G ERFR PE LF P+ +G++  G+D+ T  SI +    D D+ + L  +I+M+GG  
Sbjct: 248 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKC---DVDVRKELYGNIVMSGGTT 304
Query: 527 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 586
           +FPG++ER++  I  + P    +K++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDE 364
Query: 587 KG 588
            G
Sbjct: 365 SG 366
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query601
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 3e-23
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 2e-12
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 4e-22
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 8e-13
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 1e-21
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 3e-14
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 5e-21
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 4e-12
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 5e-19
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 1e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  100 bits (252), Expect = 3e-23
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 467 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 526
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304

Query: 527 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 586
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364

Query: 587 KGENWLRR 594
            G + + R
Sbjct: 365 AGPSIVHR 372
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query601
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.64
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.02
2v7y_A509 Chaperone protein DNAK; HSP70, heat shock protein, 98.85
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 98.6
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 98.09
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 97.31
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 96.66
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 96.4
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 96.26
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 95.21
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 95.05
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 94.99
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 94.53
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 94.32
2kho_A605 Heat shock protein 70; molecular chaperone, HSP70, 94.06
3js6_A355 Uncharacterized PARM protein; partition, segregati 93.92
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 93.89
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 93.86
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 93.29
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 93.12
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 92.7
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 92.37
3d2f_A675 Heat shock protein homolog SSE1; nucleotide exchan 92.14
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 89.26
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 89.12
4fo0_A 593 Actin-related protein 8; chromatin remodeling, nuc 85.41
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 85.11
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 85.09
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 83.88
4b9q_A605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 81.46
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.8e-60  Score=517.30  Aligned_cols=275  Identities=25%  Similarity=0.384  Sum_probs=227.7

Q ss_pred             CceEEEecCcc---cchHHHHHHH------hhhhhhhhhhhhhccccCC---CCCCcccceeecCCCceeEEeeeCCccc
Q 007501            3 PFHFMFLECML---LSKINMSFLY------AITAFGVDAAFSYKYNQQY---GICNKDGLAICPGFSTTHVIPFVEGEPV   70 (601)
Q Consensus         3 dhpVLlTE~~~---~~Rekm~Eil------~al~~~~~sllSlya~g~~---~~~~ttGLVVD~G~~~T~VvPV~eG~~l   70 (601)
                      +|||||||||+   .+|++|+|+|      +++|++++++||+|++|.+   ....+||||||+|+++|||+||++|+++
T Consensus       123 ~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l  202 (427)
T 3dwl_A          123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVI  202 (427)
T ss_dssp             GCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEEC
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEe
Confidence            69999999999   9999999999      3999999999999999821   0014799999999999999999999999


Q ss_pred             ccCceeecccchHhHHHHHHHHhccCCCCCCcccHHHHHHHHhhccccccChHHHHHHHhcCcccccccceeeEcCCCCC
Q 007501           71 YRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPP  150 (601)
Q Consensus        71 ~~a~~rl~iGG~~lt~yL~kLL~~k~~~~~~~~~~~~v~~IKe~~CyVa~Dy~~el~~~~~~~~~~~~~~~~~QlP~~~~  150 (601)
                      .++++|+++||+++|+||.++|..+|+.   ..+.+++++||+++|||+.||.+|++.+...                  
T Consensus       203 ~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~------------------  261 (427)
T 3dwl_A          203 GSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAERIKEECCYVCPDIVKEFSRFDRE------------------  261 (427)
T ss_dssp             GGGCEEESCCHHHHHHHHHHTTC-----------CHHHHHHHHHHCCCCSCHHHHHHHTTC-------------------
T ss_pred             hhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHHHHHhcCcccCCHHHHHHHhhcC------------------
Confidence            9999999999999999999999999876   4677899999999999999998887543210                  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHH
Q 007501          151 PTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIEST  230 (601)
Q Consensus       151 ~~~~~~t~eel~~~~err~~~~~rl~e~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~  230 (601)
                            +                                                                         
T Consensus       262 ------~-------------------------------------------------------------------------  262 (427)
T 3dwl_A          262 ------P-------------------------------------------------------------------------  262 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------c-------------------------------------------------------------------------
Confidence                  0                                                                         


Q ss_pred             HHHHHHHHHHhhhcchhhhhhhhhhhcccCCCCCCcCCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHH
Q 007501          231 LVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEK  310 (601)
Q Consensus       231 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~d~~L~~~~~keKr~q~llk~~~~~r~~~k~~k~~e~~~~~~  310 (601)
                                                 .....|                            +                  
T Consensus       263 ---------------------------~~~~~~----------------------------~------------------  269 (427)
T 3dwl_A          263 ---------------------------DRYLKY----------------------------A------------------  269 (427)
T ss_dssp             ------------------------------CCB----------------------------C------------------
T ss_pred             ---------------------------ccccee----------------------------E------------------
Confidence                                       000001                            0                  


Q ss_pred             HhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCC
Q 007501          311 KNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKG  390 (601)
Q Consensus       311 ~~~~~e~~r~~~~~~w~~~~r~~~~~i~~~~~~R~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~~~~l~~~~~~~  390 (601)
                                                              +.                                      
T Consensus       270 ----------------------------------------l~--------------------------------------  271 (427)
T 3dwl_A          270 ----------------------------------------SE--------------------------------------  271 (427)
T ss_dssp             ----------------------------------------C---------------------------------------
T ss_pred             ----------------------------------------ee--------------------------------------
Confidence                                                    10                                      


Q ss_pred             CCCCCCCchhhHHHHhhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCC-eEEEe
Q 007501          391 EDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKED-FQIVL  469 (601)
Q Consensus       391 ~d~fg~~d~dw~~y~~i~~~~d~~~~~~e~~~~~L~~le~~L~~~dp~F~~~~~~~~~~~~~~~~~~y~lpdg~-~~I~L  469 (601)
                                                                                           .|+|. +.|+|
T Consensus       272 ---------------------------------------------------------------------~~~g~~~~i~i  282 (427)
T 3dwl_A          272 ---------------------------------------------------------------------SITGHSTTIDV  282 (427)
T ss_dssp             -----------------------------------------------------------------------------CBC
T ss_pred             ---------------------------------------------------------------------CCCCCeeEEEE
Confidence                                                                                 02221 57889


Q ss_pred             CcccccccccccCCCCCCCC-CCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHHHHHHhhC-----
Q 007501          470 GVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR-----  543 (601)
Q Consensus       470 g~ERf~~pEiLF~Psl~g~~-~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~~EL~~l~-----  543 (601)
                      +.|||+|||+||+|+++|.+ ..||+++|.+||+   +||+|+|+.||+|||||||+|+||||.+||++||+.++     
T Consensus       283 g~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~---~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~  359 (427)
T 3dwl_A          283 GFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQ---SSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH  359 (427)
T ss_dssp             CTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHH---TSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC--
T ss_pred             ChHhhhChhhccCchhcCCccCCCccHHHHHHHH---hCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhcc
Confidence            99999999999999999999 5999999999997   57999999999999999999999999999999999997     


Q ss_pred             ---------CCCCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHHHhh-cccC
Q 007501          544 ---------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQ-LQYT  600 (601)
Q Consensus       544 ---------p~~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~rk~-~~~~  600 (601)
                               |..++|+|+++++|.|++|+||||||++++|+++||||+||+|+|++|||+|+ |+.+
T Consensus       360 ~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~~~~~  426 (427)
T 3dwl_A          360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQIFGNS  426 (427)
T ss_dssp             -----------CCCCCEECCTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC----
T ss_pred             ccccccccCCCceeEEEecCCccccceecCceeeccccchhheeEEHHHHhhhChHhheecccccCC
Confidence                     56778999999999999999999999999999999999999999999999998 5654
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 601
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 5e-27
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-16
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 2e-17
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 4e-16
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 5e-17
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 7e-14
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (267), Expect = 5e-27
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 394 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELAR-ISARLQEVDPTFVPKQESGPTQSAA 452
              +D    L K+++         +   E E+ R I  +L  V   F  +  +  + S+ 
Sbjct: 34  LAGRDLTDYLMKILTERGYS---FVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL 90

Query: 453 EIPRVRPLTKEDFQ-IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDL 511
           E     P    D Q I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+
Sbjct: 91  EKSYELP----DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMK---CDIDI 143

Query: 512 EQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 571
            + L ++ +M+GG  ++PG+++R++  I  + P    IK++   +     W G S+ A+ 
Sbjct: 144 RKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203

Query: 572 LQFPQQTFSRMDYYEKGEN 590
             F Q   ++ +Y E G +
Sbjct: 204 STFQQMWITKQEYDEAGPS 222
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query601
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 97.2
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 97.09
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 95.16
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 91.87
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 90.25
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 90.23
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 89.9
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 89.66
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 84.19
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-52  Score=412.80  Aligned_cols=133  Identities=31%  Similarity=0.609  Sum_probs=128.1

Q ss_pred             cccCCCCCeEEEeCcccccccccccCCCCCCCCCCCcchhHHHHhhcCCCCChhhHHhhhcCcEEecCCCCCCChHHHHH
Q 007501          457 VRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLE  536 (601)
Q Consensus       457 ~y~lpdg~~~I~Lg~ERf~~pEiLF~Psl~g~~~~GL~e~I~~sI~~~~~~~~d~r~~L~~NIvLtGG~S~~pGf~eRL~  536 (601)
                      .|.+||| +.|.++.|||.+||+||+|..+|.+..||+++|.+||.   +||.|+|+.|++||+||||+|+||||.+||+
T Consensus        93 ~~~lpdg-~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~---~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~  168 (225)
T d2fxua2          93 SYELPDG-QVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM---KCDIDIRKDLYANNVMSGGTTMYPGIADRMQ  168 (225)
T ss_dssp             EEECTTS-CEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHH---TSCHHHHHHHHTCEEEESGGGCSTTHHHHHH
T ss_pred             eEECCCC-CEEEEchHhccccHhhcCccccCCccCChhHHHHHHhh---cCCcchhhhhhcCEEEeCCcccCCchhHHHH
Confidence            4567888 99999999999999999999999999999999999997   5799999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCeeEeeCCCCcccceehhhhhhccCCCCCccccHHHHhhhchHHHH
Q 007501          537 AGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLR  593 (601)
Q Consensus       537 ~EL~~l~p~~~~i~V~~~~d~~~~aW~GgSilasl~~f~~~wITk~EYeE~G~~iv~  593 (601)
                      +||..+.|...+++|+.+++|.+++|+|||+||++++|+++||||+||+|+|++|||
T Consensus       169 ~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         169 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             HHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             hHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            999999999999999999999999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure