Citrus Sinensis ID: 007510
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 601 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.978 | 0.539 | 0.693 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.723 | 0.549 | 0.262 | 7e-36 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.663 | 0.436 | 0.279 | 1e-35 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.708 | 0.464 | 0.273 | 2e-35 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.752 | 0.750 | 0.258 | 7e-35 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.695 | 0.659 | 0.248 | 1e-34 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.660 | 0.630 | 0.259 | 1e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.710 | 0.571 | 0.261 | 2e-34 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.695 | 0.747 | 0.248 | 2e-34 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.753 | 0.722 | 0.237 | 4e-34 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/588 (69%), Positives = 492/588 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 118/449 (26%), Positives = 211/449 (46%), Gaps = 14/449 (3%)
Query: 28 QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
+ SYN L++ + R E ++LL M +R G D V + FF S KA
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+N +++ ++ + A +VL + + G+ DC Y +++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
SG+ +M + G+EP+V TY L+D K G+ +A + M + +KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
+ L+ GA+ +L M + + PDH L+ A A G+VD+A V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ + + Y I ++G E A ++ M +G+ P + ++LI
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
K E A E++ E ++GI + I ++S++ + ++ +L+E M I +KP V T
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
N LI C ++ + M++LS M S+GL PNT+TYS L+ + +E L+L + +
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTL 464
GV P+++ + I+ G+ +RR A+ L
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL 603
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
C S + SE A +++ ++E G+K + YT LI + K + E+ +M+ G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
V TY ALI+G K G + A +M S+ + P+ +N LI +S V +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451
Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+M V PD +T +L+ +G D A + +++ + YT I+ +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
+ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569
Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
+++L+ G C++ K ++A L E M I L+PTVST LI L M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
S G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
TL+ K G++D FE+ +M I PNV +Y +IDG AKAG+ +A +G MR
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496
Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 411 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324
Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
++ K P V Y+I I + G E A ++ M +KG+ PD LI G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
+ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443
Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
+ +AL + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
P++V + + +G C + R E A + E ++ N RP E +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + Y
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 455 SRRYEKA 461
R +KA
Sbjct: 586 LRDGDKA 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
A + EM +DP +T +L+ ++D A+++++ M+ K+ P+V Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
I + E V+ +M+++G++ + V + LI AG + A EI +E +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
G+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 207/443 (46%), Gaps = 16/443 (3%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCIIGMC---SRRYEKARTL 464
V + +I SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 153
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D + AF +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + + Y
Sbjct: 274 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +P+ + +I
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 455 SRRYEKA 461
R +KA
Sbjct: 511 LRDGDKA 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 218/472 (46%), Gaps = 19/472 (4%)
Query: 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
F++L+ C + + A + L++E G + ++T ++ +++ + + +M
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMY 217
Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+ G ++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277
Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
A +++EM ++ PD T ++ N G RA EV + + + + Y I
Sbjct: 278 GARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNI 332
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
I CS GD E A + D+M K+G++P + LI K+EAA +++E + +G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392
Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I + ++Y+ L+ + +KA L++ M + ++PT T +LI LC ++ +
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
E+ + G+ P+ + + L+ +++ LL + + P+ V + C++ G+
Sbjct: 453 ELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512
Query: 454 CSR-RYEKARTL----------NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPT 501
C ++E+AR L +H+ S+N+ K T A MV E + G PT
Sbjct: 513 CGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 572 LLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 601 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.986 | 0.525 | 0.767 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.527 | 0.761 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.978 | 0.379 | 0.761 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.900 | 0.813 | 0.781 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.507 | 0.736 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.531 | 0.702 | 0.0 | |
| 145353124 | 1089 | pentatricopeptide repeat-containing prot | 0.978 | 0.539 | 0.693 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.978 | 0.539 | 0.693 | 0.0 | |
| 110741791 | 1089 | hypothetical protein [Arabidopsis thalia | 0.978 | 0.539 | 0.693 | 0.0 | |
| 356544435 | 1071 | PREDICTED: pentatricopeptide repeat-cont | 0.918 | 0.515 | 0.731 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/593 (76%), Positives = 522/593 (88%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
+WTS AL VYRE I AG PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD K SNL
Sbjct: 895 EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954
Query: 541 CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+V L
Sbjct: 955 CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYL 1007
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/588 (76%), Positives = 517/588 (87%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+V L
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYL 993
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/588 (76%), Positives = 517/588 (87%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+V L
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYL 1428
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/541 (78%), Positives = 484/541 (89%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
FNSGR QIENKWTS+ALMVYR + AG PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480
Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
+A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540
Query: 591 V 591
V
Sbjct: 541 V 541
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/554 (73%), Positives = 487/554 (87%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ++NKWTSLALMVYRE I AG PT E++S++LGCLQLPY+
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGVS + + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947
Query: 580 DARKLEIHTAKVSL 593
DA++L TA+V L
Sbjct: 948 DAKELNASTAEVYL 961
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/589 (70%), Positives = 507/589 (86%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877
Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
AL VYRE I AG +P+++V+S+VLGCLQ+P++ ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937
Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
DGFGEYDPRAFSL EEAAS G+ P VS K P+VVDA++L+IHTA+V L
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYL 986
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/588 (69%), Positives = 492/588 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/588 (69%), Positives = 492/588 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/588 (69%), Positives = 492/588 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/552 (73%), Positives = 482/552 (87%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 387 RLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 446
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 447 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 506
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALI GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGAVDRAFDV
Sbjct: 507 PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 567 LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSC 626
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWE+A +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA GI +GI
Sbjct: 627 SQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGI 686
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 687 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 746
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E M+LS AK+DGV PNL+M +CIIGMC RRYE
Sbjct: 747 MKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYE 806
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRP ++NKWTSLALMVYRE I AG PT E++ ++LGCLQLPY+
Sbjct: 807 KACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTS 866
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGV A+ + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VSFK P+V+
Sbjct: 867 VKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVI 926
Query: 580 DARKLEIHTAKV 591
DA++L TA+V
Sbjct: 927 DAKELHASTAEV 938
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 601 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.978 | 0.539 | 0.693 | 2.8e-224 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.785 | 0.784 | 0.261 | 8.8e-37 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.667 | 0.438 | 0.294 | 5.1e-35 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.677 | 0.772 | 0.278 | 6.4e-35 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.608 | 0.726 | 0.280 | 1e-34 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.693 | 0.657 | 0.252 | 5.9e-34 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.677 | 0.646 | 0.253 | 9.9e-34 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.710 | 0.571 | 0.264 | 4.7e-33 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.758 | 0.727 | 0.244 | 6.6e-33 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.675 | 0.637 | 0.251 | 9.4e-33 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2165 (767.2 bits), Expect = 2.8e-224, P = 2.8e-224
Identities = 408/588 (69%), Positives = 492/588 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 8.8e-37, P = 8.8e-37
Identities = 130/498 (26%), Positives = 238/498 (47%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAF 81
++ L ++R R G E + LLE M RKG + D + + FF + KA++
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVR-VM 147
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P + +N L++ + A +VL ++ D Y +I + G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
K+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 268 TIIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTK 323
Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
++ K P V Y+I I + G E A ++ M +KG+ PD LI G+
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
++ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYN 442
Query: 379 ALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
+ +AL GD++ + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 443 TMFSALWSSGDKI-RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV----YR 491
P++V + ++ G C + R E A + E ++ N RP E +T L + YR
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVLIEGIGFAGYR 559
Query: 492 -EAI-VAGTIPTVEVVSK 507
EA+ +A + ++ +S+
Sbjct: 560 AEAMELANDLVRIDAISE 577
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 124/421 (29%), Positives = 212/421 (50%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFN 96
+ + +M KG + Y +C +++ I EA F K+ + PT+ T+
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYT 327
Query: 97 MLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
+L+ S+C S + SE A +++ ++E G+K + YT LI + K + E+ +M+
Sbjct: 328 VLIKSLCGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
G+ PNV TY ALI+G K G + A +M S+ + P+ +N LI +S V +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VY 272
A VL +M E V PD +T +L+ +G D A Y+++ N +G P+ Y
Sbjct: 446 AMGVLNKM-LE-RKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVPDQWTY 500
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
T I+ ++ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQL 390
+ +++++L+ G C++ K ++A L E M I L+PTVST LI L DGD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD-F 618
Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
M S G P+ TY+ + R+ + ++++ +E+GV P+L + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 451 I 451
I
Sbjct: 679 I 679
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 6.4e-35, P = 6.4e-35
Identities = 121/435 (27%), Positives = 208/435 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV--SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
+F +M N GI P+V Y +L++G +G+ A M + +KPD + FNALI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G A ++ EM + P+ T +L+ G VD AR+++ ++ K
Sbjct: 257 FVKEGKFLDAEELYNEMIRM--SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET---K 311
Query: 267 GT-PEV--YTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
G P+V YT IN C C + D A ++ +M++KG+ + + + LI G GK
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDD---AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLK---PTVST 376
A E+ ++G+ I +Y+ L+ C N K +KAL ++E M+ ++ P + T
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV-KKALMIFEDMQKREMDGVAPNIWT 427
Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
N L+ LC +L K + V DM+ + ITY+I++ + V+ + L
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 437 EDGVIPNLVMFKCII 451
GV PN+V + +I
Sbjct: 488 SKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 1.0e-34, P = 1.0e-34
Identities = 107/381 (28%), Positives = 185/381 (48%)
Query: 71 CK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
C+ SQ ++ +F + KL P++ TF L++ C + + + ++V G K +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPN 185
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
+Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
M + + PD FNALI AC + G V A + EM +DPD +T L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCM 303
Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
++D A E++ + KG P+V Y+I IN ++ E ++ +M+++GV+ +
Sbjct: 304 YSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
V + LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL +
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI-EKALVIL 419
Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
M+ + + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 423 DDVEVGLMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 5.9e-34, P = 5.9e-34
Identities = 108/428 (25%), Positives = 206/428 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + +M +DPD T +L+ ++D+A+++++ M+ K T+
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G
Sbjct: 407 IKGFC-KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 466 VPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 454 CSRRYEKA 461
R +KA
Sbjct: 585 HLRDGDKA 592
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 9.9e-34, P = 9.9e-34
Identities = 106/418 (25%), Positives = 201/418 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + EM +DP +T +L+ ++D A+++++ M+ K+ T+
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C E V+ +M+++G++ + V + LI AG + A EI +E + G
Sbjct: 403 IKGFCKYKRVEE-GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN + +I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 4.7e-33, P = 4.7e-33
Identities = 117/443 (26%), Positives = 209/443 (47%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCII-GMC--SRRYEKARTL 464
V + +I G+ SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 6.6e-33, P = 6.6e-33
Identities = 117/479 (24%), Positives = 224/479 (46%)
Query: 91 TLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
T ST F++L+ C + + A + L++E G + ++T ++ +++ +
Sbjct: 152 TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWV 211
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+ +M I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+
Sbjct: 212 FYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFS 271
Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
G ++ A +++EM ++ PD T ++ N G RA EV + + + +
Sbjct: 272 LRGRIEGARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPD 326
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
Y I I CS GD E A + D+M K+G++P + LI K+EAA +++
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
E + +GI + ++Y+ L+ G C + + +KA L++ M + ++PT T +LI LC
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHG-DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRK 445
Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
++ + E+ + G+ P+ + + L+ +++ LL + + P+ V +
Sbjct: 446 NKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTY 505
Query: 448 KCII-GMCSR-RYEKARTLN----------EHVLSFNSGRPQIENKW-TSLALMVYREAI 494
C++ G+C ++E+AR L +H+ S+N+ K T A MV E +
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
G PT+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
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| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 9.4e-33, P = 9.4e-33
Identities = 105/417 (25%), Positives = 196/417 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
N L +GR+SE ++L++ M G D + N +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKP-DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D F
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+F+EM GI N+ TY LI G AG+ M + + P+ V F+ LI +
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV 344
Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
+ G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 345 KEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
+ I IN + + ++ M+ +GV+ D V + LI GK+ A E+
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I +C+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00036018001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (757 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 601 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 1113 bits (2881), Expect = 0.0
Identities = 444/570 (77%), Positives = 512/570 (89%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
KL+ NPTLSTFNMLMSVCASS+D +GA +VLRLVQEAGLKADCKLYTTLI+TCAKSGKV
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
DAMFEVFHEMVNAG+E NVHT+GALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKWTS ALMVYRE I AGT+PT+E
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
V+S+VLGCLQLP++A +R RL+ENLG+SAD+ K+SNL +L+DGFGEYDPRAFSLLEEAAS
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908
Query: 564 FGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
G+VP VSFK+ P+V+DA +L + A+V L
Sbjct: 909 LGVVPSVSFKKSPIVIDAEELPVFAAEVYL 938
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 9e-16
Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 39/388 (10%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
F +L +P L T ++S C D ++ V + G D + +LI
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
G +VF M + ++ A+I G K G KA Y +M NV PD +
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 201 NALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
++++AC G +D + LAE + V + AL++ + +D+A EV+
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALEVFH 448
Query: 259 MIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
I + + I T + + +N F ++ + P+ V L A +
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRC------FEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------- 370
G + EI GI G NA L+LY +
Sbjct: 503 GALMCGKEIHAHVLRTGI--------GFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549
Query: 371 -KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
+ V + N L+T + +E+ + M G+ P+ +T+ LL AC R V GL
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 430 MLLSQAKED-GVIPNLVMFKCIIGMCSR 456
+E + PNL + C++ + R
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
AK+G D ++H M+ AG+ P+V+T+ ++ C +A+ + + + D
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 198 VVFNALIT---ACGQSGAVDRAFDVLAEM--------------NAEVHP----------- 229
V NALIT CG + FD + N E
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--- 285
VDPD +TI +++ AC G RE++ + K V I G W
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 286 ----------------------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ A Y M + V PDE+ +++++
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
G ++ ++ + A+ +G+ ++ ++L+ S K KALE++ ++ + V +
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
++I L ++ + + M L L PN++T L AC R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 9e-14
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
Y TLI K GKV+ ++F+EM GI+PNV+TY LIDG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
++++G+ D ++ +I ++ ++ + ++ G ++ AL+D +K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
G++ A + M KN+ + +NALI G G +A ++ M AE V P+H
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNH 426
Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIK 266
+T A++ AC +G ++ E+++ M + IK
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 25/393 (6%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
+ ++ K G + +F EM E N+ ++G +I G AG +AF + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
+ F ++ A G+ RA L + V D AL+ + G
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
++ AR V+ G PE T+A N + G E A +Y +M GV D+
Sbjct: 274 DIEDARCVF--------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
S +I +E A + G + I++ ++L+ S + A +++
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
M + + + NALI + + K +E+ M + G+ PN +T+ +L AC
Sbjct: 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 425 VEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
E G + S ++ + P + + C+I + R
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 4e-11
Identities = 69/353 (19%), Positives = 152/353 (43%), Gaps = 14/353 (3%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
A G A ++ ++ G+ + ALID +K G + A + M K
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT--- 290
Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
V +N+++ G + A + EM V D T +++ + ++ A++
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
+ + + T ++ S+ G E A +V+D M +K +I +ALI G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGN 403
Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
G+ A E+ + +G++ +++ +++ AC + ++ E+++ M ++ ++KP
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+I L L E + ++ P ++ LL AC ++E+G
Sbjct: 464 HYACMIELLGREGLLD---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 7e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
P+V TY LIDG K G+V +A + M+ + +KP+ ++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
+ D + L+T GK E+F+ MV +G+ P+ T+ +L+ C+++G V +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
+ M K ++ P+ + ++ G++G + A++ + +M P+ PD GAL+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLN 665
Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
AC V+ + I + + + Y + N + G W+ V M + G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 303 D 303
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)
Query: 21 YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKS 73
+A DVS N LI+ G E + ME K + M Y
Sbjct: 319 FAVDVS----VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL----P 370
Query: 74 QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
KA+ E + + +P T ++S CA D + ++ L + GL + +
Sbjct: 371 DKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
LI +K +D EVFH + E +V ++ ++I G + +A + M
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQV 250
+KP+ V A ++AC + GA+ E++A V + D AL+ G++
Sbjct: 485 LKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
+ A + H+ ++ + I + G A +++ M + GV PDEV +L
Sbjct: 541 NYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
+ +G V E + + I+ + Y+ ++ A +A M I
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654
Query: 370 LKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 416
P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 655 PDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
+ ++N+L++ + A ++ + E+G+ D + +L+ C++SG V E FH
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
M I PN+ Y ++D +AG++ + AY + + PD V+ AL+ AC
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMPITPDPAVWGALLNACRIH 670
Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMI 260
V+ L E+ A+ H + D ++G + C A+AG+ D V K +
Sbjct: 671 RHVE-----LGELAAQ-HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
Y TLI K+G+V+ E+F EM GIEP+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
Y L+ AK+G D V EM +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
TY LIDG KAG+V +A + M+ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
+ TY AL+ AKAG A M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAF 182
G++P+V TY LIDG +AG+V +A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
K +KPD V +N LI ++G VD A ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
Y +LI+ K+GK++ E+F EM G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 9e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 601 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.21 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.03 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.46 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.44 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.84 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.76 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.46 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.32 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.28 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.07 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.67 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.43 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.13 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.13 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.85 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.79 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.56 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.45 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.11 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.09 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.54 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.34 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.21 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.53 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.29 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.28 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.02 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.95 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.75 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.38 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.28 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.14 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.65 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.56 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.24 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.15 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 89.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.78 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.77 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.75 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.46 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.36 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.02 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.68 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.59 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.92 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.9 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.54 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.34 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.22 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.14 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.07 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 85.06 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.73 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.38 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.4 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 82.93 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.65 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 82.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.5 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.95 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.28 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-86 Score=715.99 Aligned_cols=573 Identities=77% Similarity=1.240 Sum_probs=555.2
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 007510 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (601)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (601)
.+.+.++..|+.+++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|.++|+.|+.||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35888999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875558899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (601)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (601)
.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (601)
++||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHcCCCCcH
Q 007510 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 502 (601)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (601)
|++++|.++|++|.+.|+.||..+|++|+++|.+++++|+.+.+....|+.+.+.+...|+.+|+.+|++|++.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999998888999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHhhHHHhhCCCccccccccccccccccCCchhHHHHHHHHHHhCCCCCccccCCCCeeeccc
Q 007510 503 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDAR 582 (601)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~~ 582 (601)
.|+..+++|.....+...+..|.+.+++.|...+|..+.++|+++|...++|+.+|++|.+.|++|+..+.....++|++
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~ 927 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAE 927 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEcc
Confidence 99999999998888888888999999999998888888899999987667999999999999999999988889999999
Q ss_pred CCcchhhHHhhhc
Q 007510 583 KLEIHTAKVSLSF 595 (601)
Q Consensus 583 ~~~~~~~~~~~~~ 595 (601)
+++..||++++++
T Consensus 928 ~~~~~aa~~~l~~ 940 (1060)
T PLN03218 928 ELPVFAAEVYLLT 940 (1060)
T ss_pred cCcchhHHHHHHH
Confidence 9999999999954
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=583.26 Aligned_cols=511 Identities=19% Similarity=0.295 Sum_probs=442.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhh
Q 007510 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKS 73 (601)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~ 73 (601)
.......+++.|++++|..+|++|.+.|..|....+ ...++..+.+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 334455566899999999999999987754332221 1234445567
Q ss_pred hHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 007510 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY----------------------- 130 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----------------------- 130 (601)
.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 134 ~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 788999999999999999999999999999999999999999999998888887776
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 131 ------------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 131 ------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
+.||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 455666677777777777777776 5677888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 278 (601)
||+.++.+|++.|+.+.|.+++..|... |+.||..+|++++.+|++.|++++|.++|+.|.. ||..+|+++|.+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~ 363 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISG 363 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHH
Confidence 8888888888888888888888888775 7888999999999999999999999999998864 566889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (601)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (601)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++|+++|+++|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.++|++|. .+|..+|+++|.+|++.|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.+++..+.+.
T Consensus 444 ~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 444 LEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 99999997 58899999999999999999999999999986 59999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhHHHH------------HHHHHHHHHHcCCCCcHHHHH
Q 007510 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVS 506 (601)
Q Consensus 439 g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~m~~~g~~p~~~~~~ 506 (601)
|+.+|..++|+||++|++ +|++.++...|+.+ ..+..+|+.+ |+.+|++|.+.|+.||.+|+.
T Consensus 519 g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred CCCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999655 67777777777776 6677888874 999999999999999999999
Q ss_pred HHH-hccCCCC---chhHHhhHHHhhCCCccccccccccccccccCCch--hHHHHHHHHH
Q 007510 507 KVL-GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEA 561 (601)
Q Consensus 507 ~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~~ 561 (601)
.++ +|++.+. +..+++.|.+.+|+.|+..+|+ ++++.+++.+ ++|.+++++|
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC
Confidence 876 7777664 3456778887899999999987 5777776543 6788888876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=560.90 Aligned_cols=507 Identities=20% Similarity=0.292 Sum_probs=392.1
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007510 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (601)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (601)
+++.+||.++ +.|++++|+++|++|...|+.|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4566777776 789999999999999988875543322 23455
Q ss_pred HHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007510 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (601)
..+.+.|++++|.++|+.|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 228 (601)
++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||.++|+.+|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999998888888888888888888888886 467788888888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------
Q 007510 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (601)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 298 (601)
++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+|++||.+|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 6677777777777777777777777777777777776666666666666666666666666665555332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (601)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (601)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777777777777777777778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-H
Q 007510 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (601)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (601)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 8888876 489999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 007510 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (601)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 517 (601)
.|+.|+..+|++++++|+| +|.+.+ |.+++++| +++||..+|..+++.+..+++
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999776 343333 33344444 466777777776655555555
Q ss_pred hhHHhhHH-HhhCCCcc-ccccccccccccccCCchhHHHHHHHHHHhCCCCCccc
Q 007510 518 ADIRERLV-ENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (601)
Q Consensus 518 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~ 571 (601)
.+..+... +...+.|+ ++.|..+..++...|++ ++|.++.++|++.|+.++.+
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~-~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW-DEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh-HHHHHHHHHHHHcCCCCCCC
Confidence 54443332 22345554 33333333334444554 35667777777777766543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=525.29 Aligned_cols=464 Identities=23% Similarity=0.399 Sum_probs=417.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCCHHHHHHHHHHHHhcC
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSK 106 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 106 (601)
.++.+.+.|.+++|..+|+.|.. ++...+..++..|.+.|++++|.++|+.|. .||..+|+++|.+|++.|
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 34455688999999999999875 355566678888889999999999998874 689999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (601)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 007510 187 IMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (601)
Q Consensus 187 ~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (601)
+|.. .|+.||.++|+.+|.+|++.|++++|.++|+.|... ++.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9976 688999999999999999999999999999999985 789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (601)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---
Q 007510 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--- 421 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 421 (601)
||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccch
Q 007510 422 -K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIE 479 (601)
Q Consensus 422 -~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 479 (601)
. +..+.|..+|++|.+.|+.||..+|+.++.++.+ ....+..+.+.+. ..+..+ +.
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~-~~ 882 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQ-KQ 882 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCc-ch
Confidence 1 2246799999999999999999999999965533 3444444443221 011111 11
Q ss_pred hh----------HHHHHHHHHHHHHHcCCCCcHH
Q 007510 480 NK----------WTSLALMVYREAIVAGTIPTVE 503 (601)
Q Consensus 480 ~~----------~~~~a~~~~~~m~~~g~~p~~~ 503 (601)
.. +...|+.+|++|...|+.|+..
T Consensus 883 ~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 11 2235888888898888888864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=512.50 Aligned_cols=458 Identities=21% Similarity=0.305 Sum_probs=406.2
Q ss_pred HhhhHHHHHHHHHHhhCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 71 CKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (601)
+.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 344455566666665442 478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999997 6899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (601)
. ++.||..++++|+.+|++.|++++|.++|+.|.. +|..+||+||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 253 ~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 253 T--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred h--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 5 7899999999999999999999999999999964 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 589999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHHHHh
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTL 464 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~ 464 (601)
++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +|.+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~ 478 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLL 478 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCH
Confidence 9999999999999999999999999999999999999999999999999986 5999999999999999776 4444
Q ss_pred hhhhhhccCCCccchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHhh-HHHhhCCCcc-ccccccccc
Q 007510 465 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER-LVENLGVSAD-ALKRSNLCS 542 (601)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 542 (601)
.++ .+++++ .++.|+..+|..++..+...++.+.... ..+..++.|+ ...|..++.
T Consensus 479 ~eA-------------------~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 479 DEA-------------------YAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536 (697)
T ss_pred HHH-------------------HHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHH
Confidence 433 334443 4788999999998754444444443333 3344677775 566665444
Q ss_pred cccccCCchhHHHHHHHHHHhCCCCCc
Q 007510 543 LIDGFGEYDPRAFSLLEEAASFGIVPC 569 (601)
Q Consensus 543 ~i~~~g~~~~~a~~~~~~~~~~g~~p~ 569 (601)
++...|++ ++|.+++++|.+.|+...
T Consensus 537 ~y~~~G~~-~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 537 LYNSSGRQ-AEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHhCCCH-HHHHHHHHHHHHcCCccC
Confidence 44444653 689999999999998644
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-58 Score=492.30 Aligned_cols=451 Identities=18% Similarity=0.272 Sum_probs=396.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
+.++++.|.+++..|.+.|..| +......++..+.+.|++++|.++|++|+.||.++||+++.+|++.|++++|+++|+
T Consensus 135 ~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 135 ALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred hCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 5566677777777777766544 455566677888888999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (601)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (601)
+|.+.|+.||..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|. ++|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 468
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007510 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (601)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 276 (601)
.++||.+|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+.|+.|+..+|++||
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 999999999999999999999999999875 789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (601)
.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 999999999999999999864 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 357 KALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 357 ~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
+|.++|+.|.+ .|+.|+..+|+.|+.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999975 689999999999999999999999999999876 47899999999999999999999999999988
Q ss_pred HHCCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhhccC--------------------C---CccchhhHHHHHHHH
Q 007510 436 KEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNS--------------------G---RPQIENKWTSLALMV 489 (601)
Q Consensus 436 ~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~--------------------~---~~~~~~~~~~~a~~~ 489 (601)
.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-.- + .|.....+ .....+
T Consensus 521 ~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~-~~l~~l 597 (697)
T PLN03081 521 YG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY-QKLDEL 597 (697)
T ss_pred hC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHH-HHHHHH
Confidence 75 5554 5689999999887 77787777654432210 0 11111122 235667
Q ss_pred HHHHHHcCCCCcHHH
Q 007510 490 YREAIVAGTIPTVEV 504 (601)
Q Consensus 490 ~~~m~~~g~~p~~~~ 504 (601)
..+|.+.|..||...
T Consensus 598 ~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 598 MKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHcCCCCCcch
Confidence 788999999998654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-28 Score=271.34 Aligned_cols=547 Identities=15% Similarity=0.068 Sum_probs=377.6
Q ss_pred CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHH
Q 007510 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (601)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (601)
|.+..........+.+.|++++|++.++++...+ |.+......+...+...|++++|.++|+++. +.+...|..+
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 403 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3333333333344456666677776666666554 3444444555555666667777777776543 3345566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (601)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (601)
...+...|++++|...++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCH
Confidence 666777777777777777766554 2233445556667777777777777777776543 45677888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (601)
++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888887653 445566777778888888888888888888754 23456677788888888888888988888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
++.+.+ +.+...+..++..|.+.|++++|..+++.+..... .+...|..+...+...|++++|...++.+.+.. +.+
T Consensus 558 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 558 KAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 887765 55677788888889999999999999988877643 367788888899999999999999999888765 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
...+..+..+|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 712 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDL 712 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHH
Confidence 7778888889999999999999999888754 4557888899999999999999999999988764 4567778888888
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhHH------------H
Q 007510 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT------------S 484 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~ 484 (601)
+...|++++|.+.++++.+.+ |+..++..+..++.+ ++++|....+.....++ .+...+. .
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP---NDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999988754 444566666666654 56666665554433332 2222222 2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH--hccCCCCchhHHhhHHHhhCCCccccc-cccccccccccCCchhHHHHHHHHH
Q 007510 485 LALMVYREAIVAGTIPTVEVVSKVL--GCLQLPYNADIRERLVENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEA 561 (601)
Q Consensus 485 ~a~~~~~~m~~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~g~~~~~a~~~~~~~ 561 (601)
.|...|+++++.. |+.......+ .....+. .+....+.+...+.|+... ...++.+....|+ .++|...++++
T Consensus 788 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a 863 (899)
T TIGR02917 788 KAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 4888888887654 5544332222 2333444 4455566666666676432 2222333333455 46899999999
Q ss_pred HhCCCCCccccCC--CCeeecccCCcchhhHHh
Q 007510 562 ASFGIVPCVSFKE--IPVVVDARKLEIHTAKVS 592 (601)
Q Consensus 562 ~~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~ 592 (601)
++. .|+.+..- -+.++-..|...+|.+.+
T Consensus 864 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 864 VNI--APEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Hhh--CCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 984 45443321 122344456666665554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-27 Score=262.91 Aligned_cols=520 Identities=13% Similarity=0.059 Sum_probs=411.9
Q ss_pred CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHH
Q 007510 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (601)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (601)
|.+..........+.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|.+.|+.+. +.+...+..+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 437 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence 3333333334455668999999999999999876 5666667777777788899999999998754 3345566778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (601)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (601)
+..+.+.|++++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 888999999999999999998754 6678899999999999999999999999998764 45677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (601)
++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++... .+.+...+..+...|.+.|++++|..+++
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998764 557788889999999999999999999998764 24456677889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
.+.+.. +.+..+|..+...|...|++++|...|+++.+.... +...+..+...+.+.|++++|...++++.+.. +.+
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 998765 677889999999999999999999999999886543 66788889999999999999999999998875 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
..++..+...+...|++++|.++++.+.+.. +++...+..+...+.+.|++++|.+.|+++... .|+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHH
Confidence 8899999999999999999999999998775 567788888999999999999999999999884 5666888889999
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhHHH-----------H
Q 007510 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS-----------L 485 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------~ 485 (601)
+.+.|++++|.+.++++.+.. ..+...+..+...|.+ ++++|....+.+....+ .+...+.. .
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCcHH
Confidence 999999999999999998753 3356677777777764 67777777665544433 23333322 3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHh--ccCCCCchhHHhhHHHhhCCCc-cccccccccccccccCCchhHHHHHHHHHH
Q 007510 486 ALMVYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (601)
Q Consensus 486 a~~~~~~m~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~ 562 (601)
|+..+++.++. .|+...+...+| +...+.-.+....+.+.....| ++..+..++......|+ .++|..++++|+
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 67777776653 455544433333 3445555555555666666666 45555554444455566 467989998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-18 Score=193.29 Aligned_cols=286 Identities=16% Similarity=0.137 Sum_probs=185.4
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (601)
.|++..........+.+.|+.++|.+.+++..+.. |.+.... ...++.+...|++++|++.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 46666666666666678888888888888888877 4443322 12233456668888888888
Q ss_pred hhCCC---CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 007510 85 KLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (601)
Q Consensus 85 ~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 158 (601)
++... ++.. ............|+.++|...++.+.+.. +.+...+..+...+...|+.++|++.++++.+...
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87542 2221 11111122234588888888888888764 44667777888888888888888888887754310
Q ss_pred ----------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 007510 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (601)
. |+.... ..+...+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0113345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH------------HHHHHHHHhcCChhHHHH
Q 007510 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (601)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~ 255 (601)
..... +.+...+..+...+.+.|++++|+..|++....... .+....+ ......+.+.|++++|..
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 87763 346777778888888888888888888887754211 1111111 122345667888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 888888775 556677778888888888888888888888775432 33344433333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=189.92 Aligned_cols=301 Identities=13% Similarity=0.098 Sum_probs=157.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (601)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777777653 33455666677777777777777777777665421111 2345666666677777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 007510 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~ 254 (601)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777766542 3445566666666666677777766666665431 11111 112233444444555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
..|+++.+.. +.+...+..+...+.+.|++++|.++|+++...+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--------------------------------- 246 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE--------------------------------- 246 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---------------------------------
Confidence 5555554433 223344444445555555555555555554443221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
....+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..
T Consensus 247 --~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 247 --YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 11233444445555555555555555554443 233333444555555555555555555554442 355555554
Q ss_pred HHHHHhh---cCCHHHHHHHHHHHHHCCCCCCH
Q 007510 415 LLVACER---KDDVEVGLMLLSQAKEDGVIPNL 444 (601)
Q Consensus 415 ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~~ 444 (601)
++..+.. .|+.+++..+++++.+.++.|++
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4444332 33455555555555544443333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=187.79 Aligned_cols=276 Identities=18% Similarity=0.157 Sum_probs=198.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC--CHHHHHHHHHHHHhcCC
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQ 249 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~ 249 (601)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.... ...+ ....+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCC
Confidence 445555666666666665542 2233455555556666666666666666555421 1111 12345666667777777
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~ 325 (601)
+++|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776653 445667777777777778888888887777765543322 234566677788899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007510 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (601)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (601)
.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999888764 34566788888999999999999999999987532222467889999999999999999999999884
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (601)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (601)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 677777888999999999999999999998874 689989988887654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-18 Score=194.33 Aligned_cols=388 Identities=11% Similarity=0.040 Sum_probs=285.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CC---HHHHHH-----------
Q 007510 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT---LSTFNM----------- 97 (601)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~----------- 97 (601)
.+...|++++|+..|++..+.. |.+...+..+...+...|++++|+..|++... |+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457889999999999888876 66777777788888888889999988876531 21 112222
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 98 -li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345677889999999998888764 4566777788888889999999999999888764 345666777777764 45
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007510 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (601)
+.++|+..++.+...... .....+..+...+...|++++|.+.|++..... +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 778888888765432100 011234456667788899999999999887641 234556677888889999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~ 319 (601)
++++|...++++.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999888764 4566666666667778899999998888765433222221 12344566778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
.++|..+++. .+.+...+..+...|.+.|++++|+..|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988872 24566677888889999999999999999988764 44678888899999999999999999998
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 400 MKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 400 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
..+. .|+ ..++..+..++...|++++|.++++++.+.
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7763 444 455667778888899999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=173.38 Aligned_cols=392 Identities=13% Similarity=0.085 Sum_probs=234.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHh---hCCCCCHHHHHHHHHHHHhc
Q 007510 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASS 105 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~ 105 (601)
......+.+.|++.+|.+.-..+-.++ |.+......+...+.+..+.+.....-. +..+.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334456668899999888766655554 2232222222222222222332221111 11223445666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGA 184 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~ 184 (601)
|++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777777653 334566777777777777777777777766654 344332 33344444456777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
|.+..+.. +-=.+.|+.|.-.+-..|+...|++.|++.... .|+ ...|-.|...|...+.+++|...+.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 76666542 122445666666666677777777777666542 333 235566666666666677777666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007510 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (601)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (601)
. +....++..|...|...|..+-|+..+++.++..+. =...|+.+..++-..|++.+|...+.+..... +-.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 3 334556666666666777777777777766654322 23456666666666677777777776666553 33355666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh
Q 007510 344 SLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER 421 (601)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 421 (601)
.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..+++.++ +.|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 6667777777777777777666653 333 34566666667777777777777776665 5666 3456666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 007510 422 KDDVEVGLMLLSQAKE 437 (601)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (601)
.|+++.|.+.+.+.+.
T Consensus 435 ~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 7777777777666665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-18 Score=178.14 Aligned_cols=328 Identities=12% Similarity=0.047 Sum_probs=156.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (601)
++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3344455555555555555555443 2223333333344444555555555555555442 2234445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007510 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
+++|...|+++.... +.+...+..+...+...|+.++|...+..+.... +.+...+..+ ..+.+.|++++|...+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 555555555555431 2233444455555555555555555555443321 1111122112 2244555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 007510 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQ 333 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~ 333 (601)
+.+.+....++...+..+...+.+.|++++|+..+++....... +...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 55544332222233333344455555555555555555544322 34444455555555555553 45555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-H
Q 007510 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-Y 412 (601)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 412 (601)
. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|+..|+++.+. .|+... +
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 3 2344455555555555555555555555555432 223344444555555555555555555555542 333322 2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 413 SILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..+..++...|+.++|...|++..+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233445555555555555555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-19 Score=170.97 Aligned_cols=387 Identities=15% Similarity=0.162 Sum_probs=320.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (601)
+..+++...+--....+.. |........+..++...|++.+|+++++.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555444433444443 5666777788899999999999999998764 4567789999999999999999999
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 114 VLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 114 ~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.|....+. .|+.. ..+.+...+-..|++++|..-|.+.++. .|. ..+|+.|...+...|+...|++-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99998875 45544 3445556666789999999999888876 344 568999999999999999999999999876
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 007510 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (601)
Q Consensus 192 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (601)
.|+ ...|-.|...|...+.+++|...+.+... ..|+ ..++..+...|-..|.++.|+..+++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~----lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN----LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh----cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 444 56788899999999999999999988875 3555 5677788888999999999999999999875 4457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
..|+.|..++...|++.+|...+.+.+..... -....+.|...|...|.+++|..+|....... +--....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998887543 45678889999999999999999999988764 33356788999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (601)
-+.|++++|..-|++..+. .|+ ..+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|-.+|++.+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999998874 676 47899999999999999999999999987 6676 4678999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 007510 428 GLMLLSQAKEDGVIPNL 444 (601)
Q Consensus 428 a~~~~~~~~~~g~~p~~ 444 (601)
|++-+++.++ ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999998 55553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=176.39 Aligned_cols=321 Identities=9% Similarity=0.010 Sum_probs=179.2
Q ss_pred HhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007510 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (601)
+.+.|++++|+.++..+. +.+...+..++......|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 334456666666655432 2333444444455555666666666666666553 334555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCC
Q 007510 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (601)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 227 (601)
..+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+....
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666666542 3345556666666666666666666666555442 1122222222 23555666666666666654321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC
Q 007510 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPD 303 (601)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~ 303 (601)
..++......+...+.+.|++++|...++...+.+ +.+...+..+...+...|++++ |...|++..+..+. +
T Consensus 208 --~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 --ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred --CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-C
Confidence 01222233334455566666666666666666554 4455566666666666666654 56666666654332 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALIT 382 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 382 (601)
...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+. .|+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 4556666666666666666666666666553 334445555666666666666666666666553 2332 22333445
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 007510 383 ALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~ 402 (601)
++...|+.++|...|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56666666666666666554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-17 Score=178.81 Aligned_cols=404 Identities=10% Similarity=0.011 Sum_probs=304.6
Q ss_pred hHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHH
Q 007510 28 QLHSYNRL-IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (601)
Q Consensus 28 ~~~~~~~l-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (601)
.+.-|..+ ...|+.++|++++.+..... |.....+..+...+...|++++|.++|++. .+.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444444 48999999999999998744 556666777888888999999999999984 4566778888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (601)
..|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999874 45666 8889999999999999999999999874 4466777788888999999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHhhhCCCCCCCCHH-HH----HHHHHHH
Q 007510 184 AYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKAC 244 (601)
Q Consensus 184 ~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~~~~~-~~----~~ll~~~ 244 (601)
.++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHH
Confidence 9987664 2221 11222222222 22234 77888888887531 1223221 11 1113345
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVE 321 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~ 321 (601)
...|++++|+..|+.+.+.+.+........+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 6779999999999999887632112233335778999999999999999987654321 1345666677889999999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 322 AAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 322 ~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
+|...++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999999887631 122 2345667788999999999999999998764 55678899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 388 DQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
|++++|++.+++..+ +.|+ ...+......+...|++++|..+++++++. .|+..
T Consensus 407 g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 999999999999988 4576 556667777899999999999999999983 45543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-17 Score=171.42 Aligned_cols=388 Identities=12% Similarity=0.048 Sum_probs=267.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (601)
+.+.+.|++++|+..|++.++.. |. ..++..+...+...|++++|++.+.... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44558899999999999988765 43 4566667777888899999999988653 456678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----------------------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----------------------- 166 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----------------------- 166 (601)
+|+.-|......+...+.. ...++..+... .+........+.. +++...+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9998887665443111211 11111111110 1111111111110 00000000
Q ss_pred -------HHHHHH------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC
Q 007510 167 -------ALIDGC------AKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (601)
Q Consensus 167 -------~li~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 231 (601)
.++..+ ...+++++|.+.|++....+ ..| +...|+.+...+...|++++|+..++..... .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~ 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----D 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Confidence 001110 12367888888888888654 223 3456777777888889999999999888753 3
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 232 PD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (601)
Q Consensus 232 ~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (601)
|+ ...|..+...+...|++++|...|+...+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 44 5567777888888899999999998888765 566788888888899999999999999988877543 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHH
Q 007510 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITAL 384 (601)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~ 384 (601)
...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++.....+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 888888899999999998887754 456778888888899999999999999888764311111 1122222334
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 385 CDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
...|++++|.+++++..+. .|+ ...+..+...+...|++++|...|++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4468899999999887764 444 456788888889999999999999888763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-16 Score=165.10 Aligned_cols=333 Identities=12% Similarity=0.010 Sum_probs=194.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
+......+.+.|++++|+..|+..++. .|+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334555667777777777777777654 4566677777777777777777777777777653 3355677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-----------------------------HHHHH----------------------
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRV-----------------------------VFNAL---------------------- 203 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~-----------------------------~~~~l---------------------- 203 (601)
.|++++|+..|......+-..+.. .+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777777766554433221000000 00000
Q ss_pred --------HHH------HhccCCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 007510 204 --------ITA------CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (601)
Q Consensus 204 --------i~~------~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (601)
+.. ....+++++|.+.|+...... ...| ....+..+...+...|++++|...|++..+.. +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 000 001235666666666665431 1122 23445555666666677777777776666553 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (601)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (601)
...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 556666666666677777777777666655432 45566666666666777777777777666654 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHh
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-IT-------YSILLVACE 420 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~a~~ 420 (601)
+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|+..|++..+. .|+. .+ +...+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHH
Confidence 667777777777777665532 234556666666666777777777777666552 2221 11 111111223
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007510 421 RKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 421 ~~g~~~~a~~~~~~~~~ 437 (601)
..|++++|.+++++..+
T Consensus 520 ~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 520 WKQDFIEAENLCEKALI 536 (615)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 35667777777766655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-15 Score=141.79 Aligned_cols=408 Identities=16% Similarity=0.189 Sum_probs=291.6
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----------------------------
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---------------------------- 72 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~---------------------------- 72 (601)
.|..+. +-...-.+|.+|.+.++.-+++.|.+.|. +-+..+...++++..
T Consensus 112 ~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 112 DPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred Cchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 344444 44455567799999999999999999986 334444444443321
Q ss_pred -hhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 73 -SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (601)
Q Consensus 73 -~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (601)
+.|++ |. ++-+..+....++..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-. ...++..
T Consensus 190 WK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 190 WKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred cccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 11222 22 4455556778899999999999999999999999998887899999999999875433 2378999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhhhC
Q 007510 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKA----FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE 226 (601)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 226 (601)
+|....+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999999999999999999999999987754 5677889999999999999999999998887644 44444444321
Q ss_pred --CCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 227 --VHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 227 --~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+..+. .|...|...+..|.+..+.+.|.++........ +.|+ ..-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 346677888899999999999999887765432 2222 2235677888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHH
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NW--------Q-----KAL 359 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~ 359 (601)
.|.-.-.-|+..+...++++..-.|.++-..+++..++..|...+.....-++..+++.+ .. . -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 999888888999999999999999999999999998888775544444444444444433 11 0 011
Q ss_pred HHHH-------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHH
Q 007510 360 ELYE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 360 ~~~~-------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a 428 (601)
.+++ ++.+ ........+...-.+.+.|+.++|.++|....+++- .|......-++++..+..+...|
T Consensus 503 d~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111 1222 233445566677777788888888888887755442 23333444566666777777777
Q ss_pred HHHHHHHHHCC
Q 007510 429 LMLLSQAKEDG 439 (601)
Q Consensus 429 ~~~~~~~~~~g 439 (601)
..+++.|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 77777776544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-15 Score=158.44 Aligned_cols=444 Identities=13% Similarity=0.095 Sum_probs=311.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHH-HHHH
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNM 97 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 97 (601)
-+|......-...-...++|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+..+++...|+.. .+..
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 345444444444444559999999999999999887 4442 233 5555666679999999999987765433 3333
Q ss_pred H--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 98 L--MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 98 l--i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
+ ...+...|++++|+++|+.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 3 457888899999999999999875 446777888889999999999999999999876 56666665554455456
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH------HHHHHHH---H-
Q 007510 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC---A- 245 (601)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~ll~~~---~- 245 (601)
++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ..+++.- .
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 66767999999999884 44677778888999999999999888765331 122221111 1111100 0
Q ss_pred -hcCC---hhHHHHHHHHHHhcC--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 246 -NAGQ---VDRAREVYKMIHKYN--IKGTPE----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 246 -~~g~---~~~a~~~~~~~~~~~--~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
...+ .+.|..-++.+...- .++... +..-.+-++...|++.++++.|+.+...+......+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1122 345666666655521 122212 223456677888999999999999998886545568888999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HH
Q 007510 316 HAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-ST 376 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~ 376 (601)
..+++++|+.++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999987643 23345556788899999999999999999998631 12232 23
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS 455 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~ 455 (601)
+..++..+...|+..+|.+.++++... -+-|......+...+...|.+.+|++.++.... +.|+.. +.........
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHH
Confidence 445677788899999999999999775 355778888889999999999999999977665 355532 2222222222
Q ss_pred --hhHHHHHHhhhhhhhccCCCc
Q 007510 456 --RRYEKARTLNEHVLSFNSGRP 476 (601)
Q Consensus 456 --~~~~~a~~~~~~~~~~~~~~~ 476 (601)
..+.+|..+.+.+....|..+
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCch
Confidence 257777777766666655544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-15 Score=165.85 Aligned_cols=395 Identities=12% Similarity=0.080 Sum_probs=286.0
Q ss_pred HHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007510 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (601)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (601)
...+....|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 3445566788999999998754 3455568999999999999999999999998764 55677788888999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998873 44566 8889999999999999999999999874 345566667788888899999999999876
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 007510 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (601)
Q Consensus 224 ~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g 283 (601)
.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 53 2331 11122222222 12233 6788888888754 112221 111 11133456779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (601)
++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 432 22335678999999999999999987654211 1345666777889999999999
Q ss_pred HHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007510 360 ELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (601)
Q Consensus 360 ~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (601)
.+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 99999986421 123 234566778889999999999999999875 344567788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hhHHHHHHhhhhhhhccCC
Q 007510 426 EVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKARTLNEHVLSFNSG 474 (601)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~a~~~~~~~~~~~~~ 474 (601)
++|++.++++.+ ..|+.. .+-.....+. .++++|..+.+.+....|.
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999988 445532 2222222222 2677777766655544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-14 Score=151.92 Aligned_cols=510 Identities=11% Similarity=0.004 Sum_probs=284.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CC-CHHHHHHHHHHHHhcCChHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQ 113 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~ 113 (601)
..|++++|+..|++..+.. |.+..++..+.+++...|+.++|+..+++.. +| |...+..+ ..+ +++.+|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 3466666666666666655 5555555666666666666666666665543 12 22222222 111 45555555
Q ss_pred HHHHHHHcC--------------------------------------CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHH
Q 007510 114 VLRLVQEAG--------------------------------------LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMV 154 (601)
Q Consensus 114 ~~~~m~~~g--------------------------------------~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~ 154 (601)
+++++.+.. ..|+..+.... ...|.+.|++++|++++.++.
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 555554432 12222222222 556666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC
Q 007510 155 NAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (601)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 233 (601)
+.+ +.+..-...|...|.. .++ +.+..+++. .++-+...+..+...|.+.|+.++|.+++.++.... .-.|+
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~~~~ 282 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TTDAQ 282 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cCCCc
Confidence 664 3344445555556655 244 555555442 223466777788888888999999998888865421 11122
Q ss_pred HHHH------------------------------HHHHHHHHhcCChhHHHHHHH-------------------------
Q 007510 234 HITI------------------------------GALMKACANAGQVDRAREVYK------------------------- 258 (601)
Q Consensus 234 ~~~~------------------------------~~ll~~~~~~g~~~~a~~~~~------------------------- 258 (601)
..++ ..++..+.+.++++.+.++..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 2111 122444555555555544422
Q ss_pred ----HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---
Q 007510 259 ----MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G-VIPDEVFLSALIDFAGHAGK---VEAAFEI--- 326 (601)
Q Consensus 259 ----~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~li~~~~~~g~---~~~a~~~--- 326 (601)
.+.+.. +.+......+.-...+.|+.++|.++|+..... + ..++......++..|.+.+. ...+..+
T Consensus 363 ~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 111110 123333333344455678888888888877652 1 22234444567777776655 2333222
Q ss_pred -------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 327 -------------------LQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (601)
Q Consensus 327 -------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (601)
....... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 1111111 11 33 56677777777776 7888888877777654 3664443344455
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hhHHH
Q 007510 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEK 460 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~ 460 (601)
+.+.|++++|...|+++.. .+|+...+..+..++.+.|++++|...+++..+.. |+.. .+..+...+. .++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 5688999999999988765 35555666677778888899999999998888753 3332 2222222221 24666
Q ss_pred HHHhhhhhhhccCCCccchhhHHH------------HHHHHHHHHHHcCCCCcHHHHHHHHh--ccCCCCchhHHhhHHH
Q 007510 461 ARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVE 526 (601)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~ 526 (601)
|....+.....++. ...|.. .|...|++.+. ..|+.......+| +...+...+....+.+
T Consensus 595 Al~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665544444442 233333 25666666544 4577765555554 3344555555556666
Q ss_pred hhCCCccc-cccccccccccccCCchhHHHHHHHHHHhCCCCCccccCCCC
Q 007510 527 NLGVSADA-LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIP 576 (601)
Q Consensus 527 ~~~~~~~~-~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~ 576 (601)
...+.|+. ..+.+++.+....|+ .++|...++++.+ +.|+..-..+.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~--l~P~~a~i~~~ 716 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVID--DIDNQALITPL 716 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCCchhhhh
Confidence 66777753 333344444445565 4678888888887 67776554443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-12 Score=141.37 Aligned_cols=432 Identities=14% Similarity=0.063 Sum_probs=282.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh-hHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 007510 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (601)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (601)
.......+.+.|++++|+.++.++.+.+ +.+......+...+.. .++ ++|..+++.....++..+..+...+.+.|
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 3333566778999999999999999998 4555555555556655 355 88888877655678899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHhcCChhHHHHHHH----
Q 007510 107 DSEGAFQVLRLVQEAGLK-ADCKLYT------------------------------TLITTCAKSGKVDAMFEVFH---- 151 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~---- 151 (601)
+.++|.++++.+...-.. |+..+|. .++..+.+.++++.+.++.+
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 999999999887643211 2222221 12444555555554444421
Q ss_pred -------------------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHH
Q 007510 152 -------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALI 204 (601)
Q Consensus 152 -------------------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li 204 (601)
.|.+.. +-+......+.-...+.|+.++|.++|+..... + -.++.....-++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111110 112333333333445678888888888887652 1 123344444666
Q ss_pred HHHhccCC---HHHHHHH----------------------HHHhhhCCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 007510 205 TACGQSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 205 ~~~~~~g~---~~~A~~~----------------------~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
..|.+.+. ..++..+ .+.........++ +...|..+..++.. ++.++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77766655 2223222 1111111111123 45666767766666 7888899888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007510 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (601)
....... |+......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...++...+.. +.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 7776653 44333444455556889999999999987654 3344456666777888999999999999888765 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL 416 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 416 (601)
+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++..+. .|+ ...+..+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3334444444455669999999999998875 467888888899999999999999999998874 455 55677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCC
Q 007510 417 VACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (601)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (601)
.++...|++++|+..+++..+. .|+ ...+..+-.++.. ++++|....+.....++..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 7888999999999999998874 343 3344444444433 5667766655555555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-13 Score=142.83 Aligned_cols=415 Identities=10% Similarity=0.058 Sum_probs=289.2
Q ss_pred HHhhhHHHHHHHHHHhhCCC--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 007510 70 VCKSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (601)
...+.|+++.|+..|.+... |+. .....++..+...|+.++|+..+++..... +........+...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34567889999999988753 332 123378888889999999999999988211 22344444446688889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
.++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445777888889999999999999999999876 566666644544554566676799999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCCH---HHHHHHH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFACSVY 292 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~a~~~~ 292 (601)
.+.+...+..+..+..+.|-...|.++...-+..- .+....+ ..++..- ....++ +.|+.-+
T Consensus 199 ---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 ---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 23356677888888999999999988776544321 1111111 1111110 012233 3445555
Q ss_pred HHHHHC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 293 DDMTKK-GVIPDE-VF----LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 293 ~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+.+... +..|.. .. ..-.+-++...|+..++++.++.+...+.+....+-.++.++|...+++++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555442 222322 12 123334778899999999999999998876667788999999999999999999999987
Q ss_pred hCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHHhhcCCHHH
Q 007510 367 SIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTI-TYSILLVACERKDDVEV 427 (601)
Q Consensus 367 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-t~~~ll~a~~~~g~~~~ 427 (601)
... ..++......|..+|...+++++|..+++++.+.- ..||-. .+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 532 13345556789999999999999999999998731 112323 34556777899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCcc--chhhHHHHHHHHHHHH
Q 007510 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (601)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (601)
|.+.++++..... -|......+-+.+.. ...+|.++.+.....++.... ....++.+++.-|+++
T Consensus 435 Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 435 AQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 9999999987532 255566666666654 688888888777666655322 2334555555445544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-13 Score=139.39 Aligned_cols=414 Identities=13% Similarity=0.105 Sum_probs=255.3
Q ss_pred CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCC--HHH
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT--LST 94 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~ 94 (601)
.+++++..-.+..|.+.--|++..++++...+....... .-..-+..+++.+-..|++++|..+|-+.. .++ +..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 467777788888888889999999999999888765211 111224556777778899999999987643 233 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (601)
+.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4556788999999999999999998864 556667777777777665 4566777777766554 557778888777
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC-CCCCCH------HHHHH
Q 007510 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGA 239 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~------~~~~~ 239 (601)
.|-...-+ .++.+|.... ..+.++.....|.+...+...|++++|...|........ ...+|. .+--.
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 77654443 3477666543 445567788888888888889999999888887765310 112222 11112
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC---------------------------------CCCHHHHHHHHHHHHhcCCHH
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNI---------------------------------KGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~li~~~~~~g~~~ 286 (601)
+...+-..++.+.|.+.|..+.+... ..++.+++.+...+.+...+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 33333344455555555555544320 333444444444555555555
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 287 FACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 287 ~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
.|.+-|....+. ...+|.++.-+|.+.|.+ .+..+.|+++|.++++.. +-|...-|.+.-.++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 554444433322 112354554455444332 123456666666666654 445666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (601)
++..|..+|.++.+... .+..+|-.+.++|...|++..|+++|+... +..-.-+......|.+++...|.+.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666665432 233456666666666666666666666633 3222334555666666666666666666666
Q ss_pred HHHHHC
Q 007510 433 SQAKED 438 (601)
Q Consensus 433 ~~~~~~ 438 (601)
......
T Consensus 740 l~a~~~ 745 (1018)
T KOG2002|consen 740 LKARHL 745 (1018)
T ss_pred HHHHHh
Confidence 665553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-13 Score=139.07 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007510 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---GIEPNVH------TYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (601)
.+.....|.+...+...|+++.|...|...... ...++.. +--.+...+-..++.+.|.+.|..+... .
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--h 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--H 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--C
Confidence 344455555555555555555555555554432 1112221 1112333333444555555555555444 2
Q ss_pred CCHHHH-HHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHH
Q 007510 195 PDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVY 272 (601)
Q Consensus 195 p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 272 (601)
|+-+.. --+.-..-..+...+|...+...... ...+...++.+...+.+...+..|.+-|..+.+.- ..+|+.+.
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~---d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI---DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc---ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 332221 11111111224555666666665542 12333355556667777777777777776665542 23566777
Q ss_pred HHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 273 TIAINCCSQT------------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (601)
Q Consensus 273 ~~li~~~~~~------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (601)
-+|.+.|.+. +..++|+++|.+.++..+. |...-+-+.-.++..|++.+|..+|.++.+.. .-+..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCc
Confidence 7777766532 4578999999999988765 77888888889999999999999999998875 33567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (601)
+|-.+.++|..+|++..|+++|+...+. ....++.....|..++.+.|.+.+|.+.+...... .|..
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~ 749 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSN 749 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCcc
Confidence 8889999999999999999999987653 33456788899999999999999999999888774 4543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-11 Score=121.36 Aligned_cols=370 Identities=14% Similarity=0.141 Sum_probs=278.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCCHHHHHHHHHHHH
Q 007510 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCA 103 (601)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~ 103 (601)
.-..-.|.+.-.|++++|..++.++++++ |.+...+..++.++-..|+.+++...+-. ..+.|...|-.+-....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34445677777899999999999999998 77888888899999999999999987643 34667889999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVA 179 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~ 179 (601)
+.|.+++|.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.|.. .--.++..+...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999886 5565555566778899999999999999999874222222 2233455677788889
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC-------------------------CCCCCCC
Q 007510 180 KAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPD 233 (601)
Q Consensus 180 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~ 233 (601)
.|.+.++..... +-..+...++.++..+.+...++.|......+... +.+..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888763 22345566788888888888899888887766541 0112233
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (601)
..++ -++-++.+....+....+.......++ ..+...|.-+..+|.+.|++.+|+++|..+......-+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 3331 223344555555666666666666663 3456789999999999999999999999998876655778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITA 383 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~ 383 (601)
.+|...|..++|.+.|..+.... +.+...-..|...+-+.|+.++|.++++.+.. .+..|+...-......
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998875 55666777888899999999999999998652 2233444444445667
Q ss_pred HHcCCChhHHHHHHHHHH
Q 007510 384 LCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~ 401 (601)
+.+.|+.++=+.+-..|.
T Consensus 536 l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 778888877555544443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=129.20 Aligned_cols=411 Identities=14% Similarity=0.184 Sum_probs=281.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh----CCCCC----HHHHHHHHHHHHhcCCh
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNPT----LSTFNMLMSVCASSKDS 108 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~g~~ 108 (601)
.+.-..+|+..++-+.+...+|....+...+..++.+.+.+.+|+++|.. +|.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 45667889999999888887777766666777778888899999998864 34322 23455555568899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (601)
+.|..-|+...+. .|+..+--.|+-++...|+-++..+.|.+|+..... |+....+.-| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998876 678776666777777889999999999999864322 2322222222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH-------------HH--------HHHHHHhccCCHHHHHHHHHHhhhCCC
Q 007510 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV-------------FN--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (601)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~li~~~~~~g~~~~A~~~~~~~~~~~~ 228 (601)
+-+.+ +.++++-.-.++..--+.|+-.. +. .-...+.+.|+++.|.+++.-+.++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22221 12222222222322222333110 00 112357888999999888877655421
Q ss_pred CCCCCHHHHHHHHH----------------------------------HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007510 229 PVDPDHITIGALMK----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (601)
Q Consensus 229 ~~~~~~~~~~~ll~----------------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (601)
....-..+-..++. .....|++++|.+.+.+....+..-. .....
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHH
Confidence 11110000000010 01134788999999988887663222 23333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
+.-.+-..|+.++|++.|-++...-. .+...+..+...|....+..+|++++.+.... ++.|+.+..-|.+.|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 34456778999999999877644322 26677778888898999999999998877654 57789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHH
Q 007510 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLS 433 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~ 433 (601)
-.+|.+.+-.--+. ++-|..+...|..-|....-+++|+..|++..- +.|+..-|..++..|. +.|+++.|.++++
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99998876554332 345778888888889999999999999999765 7899999998887775 5899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh
Q 007510 434 QAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 434 ~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
...+. +.-|......|+..|+.
T Consensus 685 ~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhcc
Confidence 88753 66678888888888764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-12 Score=116.67 Aligned_cols=323 Identities=21% Similarity=0.271 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHHHCC-----------
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG----------- 157 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~m~~~g----------- 157 (601)
+++=|.|+.. ..+|....+.-+|+.|...|++.+...-..|+...+ ...++.-| ++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666654 557889999999999999988877766655554433 11111111 12222222111
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC
Q 007510 158 --------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (601)
Q Consensus 158 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 229 (601)
.+.+..++.+||.++|+.-..+.|.++|++-.....+.+..+||.+|.+-.-. ...+++.+|... .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq--k 268 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ--K 268 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh--h
Confidence 25678899999999999999999999999998887789999999999765433 237788899876 6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCC
Q 007510 230 VDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KGV 300 (601)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~ 300 (601)
+.||..|+|+++.+.++.|+++.| .+++.+|.+.|+.|+..+|..+|..+++.++..+ +..++.++.. +.+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 899999999999999999987655 5677889999999999999999999999888754 4444444432 222
Q ss_pred C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 301 I---P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (601)
Q Consensus 301 ~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (601)
+ | |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 2 55678888899999999999999887665421 2233 2235667778888889999999999998766
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007510 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (601)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (601)
+-|+..+...++++..-.|+++-.-++|..++..|..-+...-.-++.-+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 7788888888999999999999998999888887644444433333333333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-11 Score=113.83 Aligned_cols=332 Identities=14% Similarity=0.042 Sum_probs=193.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HH
Q 007510 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH--TY 165 (601)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~ 165 (601)
.+.|...+-...-.+.+.|....|...|...... . +..|...+....-..+.+.+..+ .. |.+.|.. .=
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHH
Confidence 3455555555555666677777777777666532 1 22233333322222222222221 11 1121111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC-CCHHHHHHHHHHH
Q 007510 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKAC 244 (601)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~ll~~~ 244 (601)
--+..+|-...+.+++++-.+...+.|++-+...-+....+.-...++++|+.+|+++.+.. +.. .|..+|+.++ |
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHH--H
Confidence 22344555556677777777777777665555544445555566677777777777776642 222 3455666655 3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (601)
.+..+-.-+. +-......+ +--+.|...+.+.|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|.
T Consensus 308 v~~~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 3332211111 111111111 222356666777777777777777777777766544 4556677777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
+-++.+.+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 7777777665 5566777777777777777777777777776653 4466777777777777777777777777776654
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..+...+..|...+.+.++.++|.+.+++-++
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22456677777777777777777777766554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=141.11 Aligned_cols=224 Identities=18% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
+...+...++.+.|.+.++++...+ +-++..+..++.. ...+++++|.+++.+..+. .++...+..++..+.+.++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhH
Confidence 3333344444444444444444433 1133334444443 3444444444444443332 1233334444444444444
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 213 ~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
++++..+++.+... ...+.+...|..+...+.+.|+.++|.+.+++..+.. |.+....+.++..+...|+.+++.+++
T Consensus 126 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 126 YDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 44444444443321 1222334444444444444444444444444444443 333444444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
+...+.. ..|...+..+..++...|+.++|...+++..+.. +.|+.+...+.+++...|+.++|.++.++
T Consensus 204 ~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 204 KRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 4433332 1122333444444444444444444444444432 33444444444444444444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-11 Score=122.43 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=269.8
Q ss_pred hhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
..|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..--.+ +.|...|..+.....+.|.+++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999998864 5677899999999999999999988775554433 55778999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHhhh
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA----LITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+.. ++..+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 55666666677889999999999999999988743223223333 44556677777999999988876
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------------------------CCCCHHHHHHHHHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN---------------------------IKGTPEVYTIAINC 278 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li~~ 278 (601)
. .+-..+...++.++..+.+...++.+......+..+. +.++..+ --++-+
T Consensus 309 ~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 309 K-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred h-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 3 2334455577888888999999999888777665521 1222233 122333
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 279 CSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (601)
+......+....+.....+.. +.-+...|.-+..++...|++.+|+.++..+.....--+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444444444555555555 333566888999999999999999999999988766667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHHHH
Q 007510 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (601)
+|.+.|+...... +-+...--+|...+.+.|+.++|++.+..+.. .+..|+..........+...|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998753 33455666788889999999999999998642 23455555566667778888888876
Q ss_pred HHHHHHHH
Q 007510 429 LMLLSQAK 436 (601)
Q Consensus 429 ~~~~~~~~ 436 (601)
..+-.+|+
T Consensus 546 i~t~~~Lv 553 (895)
T KOG2076|consen 546 INTASTLV 553 (895)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-10 Score=109.66 Aligned_cols=368 Identities=12% Similarity=0.046 Sum_probs=242.7
Q ss_pred HHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhH
Q 007510 68 FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CK-LYTTLITTCAKSGKVDA 145 (601)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~ 145 (601)
+.+....|....|+..|......-+..|.+-+....-.-+.+. ...+.. |.+.| .. .=-.+..++-...+.++
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777776554444445444433222222222 222222 22222 11 11234456666677788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+..-.+.....|++-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-. +..+. .+.++.+-
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--kLs~LA~~ 321 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--KLSYLAQN 321 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--HHHHHHHH
Confidence 888888888888766666555555566677888899999988887631 1256677776643 33221 12222222
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (601)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (601)
......+.|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.+.+-|....+...|++-++...+.++. |
T Consensus 322 v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 322 VSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred HHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 1111245554 66777788888888889999998888877 666778888888898888888999988888887655 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (601)
-..|-.+.++|.-.+...-|+-.|++..+.. +.|...|.+|.++|.+.++.++|++-|.+....| ..+...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 8888888889988888888888888887764 6678888899999999999999999998888765 3456788888888
Q ss_pred HHcCCChhHHHHHHHHHHh----CCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 384 LCDGDQLPKTMEVLSDMKS----LGLCPNTI--TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (601)
|-+.++..+|.+.|.+-.+ .|..-+.. ...-|..-+.+.+++++|........+. .+...-.++|+.
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlR 548 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLR 548 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 8888888888888877544 33332211 1222445567778888887766655542 444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-11 Score=125.28 Aligned_cols=290 Identities=10% Similarity=-0.036 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHHhhCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 73 SQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
..|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+....+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34667777777765442 22 2233344455666778888888887776543222223333446667777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHHHHhhh
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~~~~ 225 (601)
++.+.+.. +.+..++..+...|.+.|++++|.+.+..+.+.++.+ ...+. .-..++ ...+..+++.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88877764 4466677777778888888888888888877765432 22221 111111 222222323334433333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007510 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (601)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (601)
... ..+.+...+..+...+...|+.++|.+++++..+.. +.+... ...........++.+.+.+.++...+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 111356667777777888888888888888777754 222211 111222223456777777777776665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 55667777788888888888888854443345777777788888888888888888887754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=139.03 Aligned_cols=256 Identities=18% Similarity=0.155 Sum_probs=81.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCh
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (601)
.+.+.+.|++++|++++++.......|.+..+...+..++...++++.|++.++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4445567777777777754433321245555555555566666667777766666542 233345555554 566667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (601)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7776666655443 2344555566666666677777776666655422 234556666666666677777777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007510 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (601)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (601)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|++..+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 66552 223555666666666666666666666655542 12333455566666666677777777776666654 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 268 TPEVYTIAINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (601)
|+.+...+...+...|+.++|.++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666666667766666666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-10 Score=109.76 Aligned_cols=435 Identities=13% Similarity=0.097 Sum_probs=292.2
Q ss_pred CCCCCCCChhhhHHHHHHHH-------hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-
Q 007510 17 KHANYAHDVSEQLHSYNRLI-------RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP- 88 (601)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~-------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 88 (601)
+++.|.+.+..+..-....+ .++++..|+++|++.+..+ ..+..+....+.+--+++.+..|+.+++...
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 33444555554444333333 4788889999999999876 4555566666777778889999999998753
Q ss_pred --CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007510 89 --NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (601)
Q Consensus 89 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (601)
+.-...|-..+-.=-..|+...|.++|++-.+. .|+...|++.|+.=.+.+.++.|..+|+..+-. .|++.+|-
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 222345666665566679999999999988765 899999999999999999999999999998754 69999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHH
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSK-NV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMK 242 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~ll~ 242 (601)
--...=.++|....|..+|+...+. |- .-+...+.+...--.++..++.|.-+|.-.... ++.+ ...|.....
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHH
Confidence 9999889999999999999988754 20 111223333333334556777888887766653 2222 333444443
Q ss_pred HHHhcCChhHHHHH--------HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 007510 243 ACANAGQVDRAREV--------YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID 312 (601)
Q Consensus 243 ~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~ 312 (601)
.--+-|+....... ++.+.+.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...|-
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 33344554333322 33444444 556677877787777888888888888887764 33321 12222111
Q ss_pred -----HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 313 -----FA---GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (601)
Q Consensus 313 -----~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (601)
++ ....+.+.+.++++..++. ++-...|+.-+=-+| .++.++..|++++..... ..|-..++...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHH
Confidence 11 2457788888888887773 333344444433333 467788888888887663 46777788888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh--h
Q 007510 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--R 457 (601)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~--~ 457 (601)
|..-.+.++++....++++.++.+ +-|..+|......=...|+.+.|+.+|+-++.. .++.....|.+.|+-=.. .
T Consensus 444 IelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 888788888888888888888753 335677887777777888888888888888765 334444566666664221 3
Q ss_pred HHHHHHhhh
Q 007510 458 YEKARTLNE 466 (601)
Q Consensus 458 ~~~a~~~~~ 466 (601)
++++..+.+
T Consensus 523 ~ekaR~LYe 531 (677)
T KOG1915|consen 523 FEKARALYE 531 (677)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=123.92 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=143.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (601)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666655554433111 1222322334445666666666666666654 34432222 2244566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCH------HHHHHHHHHHHhcCChhHHHHH
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~ 256 (601)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666553 3345555566666666666666666666665532 111111 1122222222233333444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (601)
++.+.+.- +.++.....+...+...|+.++|.+++.+..+. .||.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 44443321 344555555666666666666666666555553 2232111 1122223355555555555555443 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
-|+..+..+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555566666666666666655543 355555555555556666666665555554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-11 Score=122.39 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHhhCCCC--CHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHH
Q 007510 74 QKAIKEAFRFFKLVPNP--TLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFE 148 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~ 148 (601)
.|+++.|.+.+...+.. ++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 48889999888876542 2333 333344558899999999999999875 45543332 44678889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHH
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
.++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 557888999999999999999999999999987644322 123334444444555666777777
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (601)
.+... .+.+......+...+...|+.++|.+++++..+. ++++.. .++.+....++.+++++..+...+..+.
T Consensus 254 ~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66542 3456777888999999999999999999998874 455432 2344445669999999999999887654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777889999999999999999999999886 58888889999999999999999999997754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-09 Score=106.81 Aligned_cols=369 Identities=12% Similarity=0.088 Sum_probs=278.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
.|-.=...|-..|..-.+..+....+..|+.. -..||+.-.+.|.+.+.++-|..+|...++-- +.+...|......
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ 559 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMF 559 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHH
Confidence 34333444444555555555555555555543 24689999999999999999999999988753 5567788888887
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (601)
=-..|..+....+|++.... ++-....|......+-..|++..|..++.+..... +-+...|...+..-....+++
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHH
Confidence 77889999999999999876 34556677777778888899999999999887641 235667888888889999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (601)
.|..+|.+.... .|+..+|.--+...--.+..++|++++++.++. -|+ .-.|..+.+.+-+.++.+.|.+.|..-
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 999999988764 667788888888888889999999999988876 344 347788888999999999999998876
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007510 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (601)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (601)
.+. ++-.+..|-.|...--+.|.+-.|+.++++..-.+ +.+...|-..|+.-.+.|+.+.|..+..+.++. ++.+..
T Consensus 712 ~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~ 788 (913)
T KOG0495|consen 712 TKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGL 788 (913)
T ss_pred ccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccch
Confidence 655 35566788888888889999999999999988665 567889999999999999999999999887765 666677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H-hhHHHHHHhhhhhhhccCCCccchhhH
Q 007510 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEKARTLNEHVLSFNSGRPQIENKW 482 (601)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (601)
.|.--|....+.++-......+++. +-|+.+.-++-.++ + +++++|.++.+.....+ |+.+..|
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d---~d~GD~w 854 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD---PDNGDAW 854 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC---CccchHH
Confidence 8888888877777755555444332 23444444444443 2 37888888876554433 3444455
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-09 Score=103.23 Aligned_cols=416 Identities=13% Similarity=0.099 Sum_probs=333.1
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCCHHHHHHHHH
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~ 100 (601)
.++.++..|..-+.-...+.|+-++.+..+.- |.+......+ .+..-++.|.+++.+ ..+.+...|.+...
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45677888998888888888999999888753 5554444333 333446667666654 45778899998888
Q ss_pred HHHhcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 007510 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (601)
.=-.+|+.+....+..+ +...|+..+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 88889999988888765 4467888899999998999999999999999999998877643 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (601)
.+.++-|..+|....+. .+.+...|......--..|..++...+|++.... .+-....|......+-..|++..|+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998875 3556777877777767789999999999998864 3444556666677778889999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
.++....+.. +.+...|.+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999999886 668899999999999999999999999988775 456666666666666679999999999998886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
++.-...|..+...+-+.++++.|++.|..-.+. ++..+..|-.|...-.+.|++-+|..+|++.+-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3444668888899999999999999998876543 34456788888888889999999999999987754 446788999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
.|+.=.+.|+.+.|..+..++++. +..+...|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999999988864 44455667766666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-11 Score=121.68 Aligned_cols=288 Identities=11% Similarity=-0.009 Sum_probs=153.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (601)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34677777777777666542 33 333444456666777788887777776654 2333 23334466677777788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHH-HHHHH---HhcCChhHHHH
Q 007510 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRARE 255 (601)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~a~~ 255 (601)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -..++ ...+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8887777777664 3355566677777777788877777777776542 1 12121210 11111 12222222222
Q ss_pred HHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 007510 256 VYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~ 330 (601)
.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+....+....+. ++. .....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 333333221 12355666667777777777777777777766653321111101 111 112234555555555554
Q ss_pred HHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
.+.. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4432 2233 3444555555566666666666553222222455555555555555566666665555553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-10 Score=103.54 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=126.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (601)
+.+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|.++.|+++++.+.++ ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777777777777643 334555666777777777777777777777653 332 2334455566677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~ 254 (601)
+.|..+|..+.+.| .--......|+..|-...+|++|+++-+++.+.+ -.+. ...|.-+...+....+.+.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777776544 2234455566667777777777777666555421 1111 112333334444445566666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
.++.+..+.+ +.++.+--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666655544 33333334445555566666666666666655544333344555555566666666666555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=108.60 Aligned_cols=390 Identities=15% Similarity=0.168 Sum_probs=253.1
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCC----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 007510 66 RFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITT 136 (601)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~ 136 (601)
.+..-+..+.-..+|+..|+-+.. ||.- .--.+...+.+...+.+|+..++.....-...+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344445555667788888876542 2221 112244567788899999999988776522222 2234444445
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALI 204 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li 204 (601)
+.+.|+++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|.+|...... |+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 67889999999999998776 688877777777777789999999999999765333 3333333322
Q ss_pred H-----HHhccCCHHHHHHHH---HHhhhCCCCCCCCHH---------------------HHHHHHHHHHhcCChhHHHH
Q 007510 205 T-----ACGQSGAVDRAFDVL---AEMNAEVHPVDPDHI---------------------TIGALMKACANAGQVDRARE 255 (601)
Q Consensus 205 ~-----~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~---------------------~~~~ll~~~~~~g~~~~a~~ 255 (601)
. -.-+.. -..|.+.. ..+.. +-+.||-. .-..-...|.+.|+++.|.+
T Consensus 364 ~nd~lk~~ek~~-ka~aek~i~ta~kiia--pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 364 KNDHLKNMEKEN-KADAEKAIITAAKIIA--PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred hhHHHHHHHHhh-hhhHHHHHHHHHHHhc--cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 1 111111 11122211 11111 11222210 00112445789999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH------------------------------------HHhcCCHHHHHHHHHHHHHCC
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINC------------------------------------CSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~g~~~~a~~~~~~m~~~~ 299 (601)
++.-+.+.+-+.-...-+.|-.. -..+|++++|.+.+++.+...
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 99877665422211111111111 112478889999888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (601)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (601)
..-....|+ +.-.+...|++++|++.|-++..- +..+..+...+...|-...+..+|++++-+.... ++.|+....-
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 322222232 223466788999999888766432 2346777788888898899999999998877653 4557788888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 007510 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--- 456 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--- 456 (601)
|...|-+.|+-.+|.+..-+--+. ++-|..|..-|..-|....-++.++.+|++..- +.|+..-|..+|..|.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999998877664443 556778888888888888888999999988765 78999999999998876
Q ss_pred hHHHHHHhhh
Q 007510 457 RYEKARTLNE 466 (601)
Q Consensus 457 ~~~~a~~~~~ 466 (601)
.|.+|..+..
T Consensus 675 nyqka~d~yk 684 (840)
T KOG2003|consen 675 NYQKAFDLYK 684 (840)
T ss_pred cHHHHHHHHH
Confidence 5666665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-11 Score=121.65 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=160.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007510 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (601)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (601)
+..+|...|..+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345666666664433 12233444556666666677777777776665431 011344555554333211 11111
Q ss_pred HH-HhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 220 LA-EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 220 ~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
+. ++... .+-...+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 11 11111 11223466677777777777777777777666654 335566666666666667777777777666544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (601)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (601)
... +-..|--+...|.+.++++.|+-.|+.+.+-+ +.+.+....+...+-+.|+.++|++++++..... +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 222 22344455556667777777777777666655 3445555556666667777777777777666543 23444444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 455556666777777777777766 44543 44556666677777777777666666553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-10 Score=104.88 Aligned_cols=286 Identities=16% Similarity=0.122 Sum_probs=213.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (601)
.|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 589999999998877776 3345567777788888899999999999988763356677777888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 007510 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
.+++.+.+ +.++........+|.+.|++.+...++..+.+.+ .-.| ..+|..++.-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88888775 5567788888899999999999999999988753 3222 235666666666666666656666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007510 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (601)
+..++. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++...-.+..++..+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 666554 355567777788888888888888888888888776654 2222 23455677777666666655543 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
++-.+.+|...|.+.+.+.+|.+.|+..... .|+..+|+.+.++|.+.|+..+|.+.+++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5577778888888888888888888876654 57888888888888888888888888877543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-10 Score=103.60 Aligned_cols=271 Identities=17% Similarity=0.165 Sum_probs=159.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHhcCChhH
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDR 252 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 252 (601)
+.+.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..|.|++++..+... ++...+ ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 355566666666665431 112223334555566666666666666665542 111111 1223344555666777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~ 328 (601)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++...+..+.. ..|.-+...+....+.+.|...+.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 777777766644 233455666777777777777777777777666554432 234455555555667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007510 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (601)
+..+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+. .+.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 777665 33444555666777777888888888887776543223455667777888888888888877777664 333
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
...-..+...-....-.+.|...+.+-++ -.|+...+..||+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 33333333333344444555555544443 35777777777764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-11 Score=120.00 Aligned_cols=258 Identities=11% Similarity=0.011 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (601)
+..+|...|.++... +.-+......+..+|...+++++|.++|+.+.....-...+...|++.+--+-+ +-+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346777777775544 122223444566777788888888888877766432222345566666533221 112222
Q ss_pred H-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 257 Y-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
+ +.+.+.+ +..+.+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2333333 555678888888888888888888888877766433 56677777777777777888888887765442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (601)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (601)
+-+-..|..+...|.+.++++.|.-.|+...+.+ +.+.+....+...+.+.|+.++|+++++++.... +-|+..--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 1223334445667778888888888888777755 3455666667777777888888888888776632 1233333344
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007510 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (601)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (601)
...+...+++++|.+.++++++ +.|+..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~ 592 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESS 592 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHH
Confidence 4556667777888888887777 5555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-09 Score=102.46 Aligned_cols=387 Identities=11% Similarity=0.067 Sum_probs=242.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CC-HHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~ 109 (601)
|...++|++++|++.+.+.+... |....++......+...|++++..+.--+..+ |+ +..+.--.+++-+.|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34458999999999999999876 56577777788888888999988877665443 32 345666666777778887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHh------------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (601)
+|+.=.....-.+.-.|..+-..+=+.+- ..|.+..++-.+ .+ +-|+.....+....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77543322211110111111111111111 111111111111 11 22333333332222211
Q ss_pred -------------cC---CHHHHHHHHHHHHhC-CCCC-----CH------HHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 175 -------------AG---QVAKAFGAYGIMRSK-NVKP-----DR------VVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~-g~~p-----~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
.+ .+..|.+.+.+-... -..+ |. .+.......+.-.|+...|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222221100 0011 11 11111111233457888888888887764
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (601)
. +.+...|--+..+|....+.++....|+...+.+ +.++.+|..-...+.-.+++++|..=|++.....+. +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 1 1222236667778899999999999999998887 667788888888888889999999999998877543 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH--HH
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------VS--TM 377 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~--~~ 377 (601)
|--+.-+..+.++++++...|++.+++ ++..+.+|+.....+...+++++|.+.|+...+. .|+ .. .-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 666666666788999999999998876 5677889999999999999999999999988764 233 11 11
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
-.++..- =.+++..|..++++..+ +.|. ...|.+|...-.+.|+.++|+++|++...
T Consensus 508 Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1122111 23888999999999988 4454 56788999899999999999999987654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-08 Score=92.08 Aligned_cols=366 Identities=14% Similarity=0.094 Sum_probs=266.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 007510 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTC 137 (601)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~ 137 (601)
......++.--+++++..|+.+|+... ..+...|-..+..=.++.....|..++++.+.. -|- ...|-.-+.+=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 333344445556788899999999865 456778888888888999999999999998875 333 23455566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (601)
-..|++..|.++|+.-.+- .|+..+|++.|+.=.+-+.++.|..+|++..-- .|+..+|--..+.--+.|....+.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 7789999999999998876 899999999999999999999999999998854 689999988888888899999999
Q ss_pred HHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH----
Q 007510 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV---- 291 (601)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~---- 291 (601)
.+|+........-..+...+.+...--.++..++.|.-+|....+.- +.+ ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99988775311111123344444444456778899999998887752 333 45566666555566665443333
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHH--------HHHHhcCCHHH
Q 007510 292 ----YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-I-SYSSLM--------GACSNAKNWQK 357 (601)
Q Consensus 292 ----~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~li--------~~~~~~g~~~~ 357 (601)
++.+...+.. |-.+|--.+..-...|+.+...++|+..+..- +|-. . .|...| -.-....+.+.
T Consensus 307 Rk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2344444432 66777777777778899999999999988763 4421 1 111111 11135788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH----HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007510 358 ALELYEHMKSIKLKPTVSTMNAL----ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (601)
+.++|+...+. ++....|+.-+ ..--.++.++..|.+++...+ |.-|...+|...|..=.+.+.++..+.+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999988873 33344555443 333446788999999998876 468999999999999999999999999999
Q ss_pred HHHHCC
Q 007510 434 QAKEDG 439 (601)
Q Consensus 434 ~~~~~g 439 (601)
+.++.+
T Consensus 462 kfle~~ 467 (677)
T KOG1915|consen 462 KFLEFS 467 (677)
T ss_pred HHHhcC
Confidence 999854
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=106.29 Aligned_cols=370 Identities=10% Similarity=0.049 Sum_probs=260.1
Q ss_pred HhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChhHH
Q 007510 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~a 146 (601)
+......++|+..|++....|+..+..+...-.. ..-.+.+.++.+.... ...+......+.........-++.
T Consensus 151 y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~ 228 (611)
T KOG1173|consen 151 YVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES 228 (611)
T ss_pred hhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc
Confidence 3444567788888887776666666655443222 1222323333332211 112222222222222111111111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
...-.+-.-.+...+.........-+...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=..+...
T Consensus 229 ~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 229 LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1111111112335566667777777888999999999999998774 666777777778889999888777776777653
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDE 304 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~ 304 (601)
.+....+|-++..-|.-.|...+|++.|.+....+ +.-...|-.+...|.-.|..+.|+..+...-+. |..
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--- 380 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--- 380 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---
Confidence 34556789999988999999999999999887765 333568999999999999999999998876553 321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHH
Q 007510 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKP----TVSTMN 378 (601)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~ 378 (601)
..+--+.--|.+.+..+.|.++|.+..... +.|+.+++-+.-.....+.+.+|..+|+...+. .+.+ -..+++
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 113333445788899999999999988764 678889999988888899999999999987631 0111 234678
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
.|..+|.+.+.+++|+..+++.+.. .+-|..++.++.-.+...|+++.|.+.|.+.+- +.|+..+...++..+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8999999999999999999998875 355788999999999999999999999998776 789988888777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-08 Score=98.15 Aligned_cols=399 Identities=16% Similarity=0.182 Sum_probs=202.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (601)
..++++|++..-+..|+..++.-.+.....+....+++..+.+-++-+++++.+-..-++..-+-.|..+++.++.++|.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 34558899988888898887654333344444455555555555556666665544444444555556666666666666
Q ss_pred HHHHHHHHc------CCCCCHH--------------------------------------HHHHHHHHHHhcCChhHHHH
Q 007510 113 QVLRLVQEA------GLKADCK--------------------------------------LYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 113 ~~~~~m~~~------g~~~~~~--------------------------------------~~~~li~~~~~~g~~~~a~~ 148 (601)
+.+...... ..+.+.. .|++|.+-|.+.|.++.|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 655544321 0122333 34455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhCCC-----------CC
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------VAKAFGAYGIMRSKNV-----------KP 195 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~g~-----------~p 195 (601)
+|++.... ..++.-|+.+.+.|+.... ++-.+..|+.+...+. +.
T Consensus 270 vyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 55554432 2233334444444433111 1111112222211100 00
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---H
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---P 269 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~ 269 (601)
+...|..-+. ...|+..+-...+.+......+.. .-...|..+.+.|-+.|+++.|+.+|++..+...+.- .
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 1111111111 112333444444444443211100 0123466667777777778888887777766543222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
.+|..-...-.+..+++.|+++.+......-. | +...|+..++.-...|-++....+++.+.+
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45656666666777777777777665432111 1 123344445544556667777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCC
Q 007510 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCPN 408 (601)
Q Consensus 333 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~ 408 (601)
..+-. +.......-.+-...-++++.++|++-...-..|++ ..|+..+.-+.+ .-.++.|..+|++.++ |++|.
T Consensus 506 LriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 506 LRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 55322 222112222334445567777777765544334554 456665554442 3357788888888887 67766
Q ss_pred HHHHHHHH--HHHhhcCCHHHHHHHHHHHHH
Q 007510 409 TITYSILL--VACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 409 ~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..-+.-|+ ..=...|....|+.+++++..
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 43322222 223446777777777777543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-09 Score=96.40 Aligned_cols=286 Identities=12% Similarity=0.046 Sum_probs=196.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007510 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (601)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (601)
.|++..|+++..+-.+.+ +.....|..-..+--+.|+.+.+-+++.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888776665 3334455555666677788888888888877653244555555666777788888888887
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 007510 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
++++.... +....+......+|.+.|++.....++..+.+.+.-.+. .+|+.++.-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 77776531 344567777788888888888888888888887765543 24566666555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (601)
+..... ..-++..-.+++.-+.+.|+.++|.++..+..+++..|+. . ..-.+.+.++...-.+..+.-.... +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555433 2335566667777778888888888888888877765551 1 1224456666666666555544321 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++..+.+|...|.+++.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 446777888888888888888888887776 578888888888888888888888888877653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-10 Score=114.82 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
.||.+||..+|.-||..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456666666666666666666666 6666665555556666666666666666655554 4566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007510 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (601)
..+|..+|+... ++..++ -.-.++..+...|--..-..++..+.-. .+.-||..+ ++......|
T Consensus 90 l~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illlv~eg 153 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLLVLEG 153 (1088)
T ss_pred HHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHHHHHH
Confidence 666666666544 222221 1111222233333333333333222111 233444333 333345556
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (601)
.++.+.+++..++...... +... +++-.... ..+++-....+...+ .|++.+|..++..-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6666666666554432111 1111 13322222 223333332222222 478888888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
.+|.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999888888877777755 77888888888888888889998888877777777665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-09 Score=114.17 Aligned_cols=248 Identities=12% Similarity=0.000 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHhhCC---CCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007510 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (601)
.+++++|+.+|++.. +.+...|..+..++. ..+++++|...+++..+.. +.+...+..+..++...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456888999998754 334556655554443 2345789999999999875 557888888888999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 007510 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (601)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 220 (601)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4457788889999999999999999999998774 33 233334455566789999999999
Q ss_pred HHhhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 221 AEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
++..... +| +...+..+...+...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 430 ~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 9887531 23 34456667788889999999999998876553 334555667777778777 47777777765531
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 300 -VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 300 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
..|....+ +-..+.-.|+.+.+... +++.+.+
T Consensus 504 ~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33344556776666665 7777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-09 Score=100.03 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=219.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (601)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (601)
+...+......-.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=.+|.+.- +-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 345566666677777888899999999999988765 6677777777778888888887777777777662 55677888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (601)
++.--|...|...+|.+.|.....-...+ ...|-.....|+-.|..++|...+....+.= +....-+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 88888888899999999998876432222 2367778888888899999998887665541 1111122233445778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCH
Q 007510 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNW 355 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~ 355 (601)
.+..+.|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 88999999999887766443 7777777777777788899999999877621 1 011244688999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
++|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+.+- +.||..+-+.++..
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99999999988764 67889999999999999999999999999876 78999888887763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-09 Score=100.34 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3455566666777777777777777766654 445566677777777777777777777777665433 44556666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (601)
+...|++++|...++...+... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777765421 2234456666777777888888888887777643 2345667777777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877664 234455666666777777888888777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-09 Score=100.24 Aligned_cols=196 Identities=16% Similarity=0.103 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..... +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444444555544444444332 2233444444444444455555555544444332 223333444444444
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
..|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444443210 011112223333344444444444444444444332 22233444444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (601)
...+++..+.. ..+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444443331 11233333333344444444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-09 Score=111.50 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHhc-----cCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHH
Q 007510 195 PDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKM 259 (601)
Q Consensus 195 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~ 259 (601)
.+...|...+.+... .+..++|..+|++.... .|+ ...+..+..+|. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344555444444211 13456777888777653 343 334444444333 22346788888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007510 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (601)
..+.+ +.+..++..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+.. +.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 87776 566777777777788888888888888888776543 4556777777788888888888888888776522 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVA 418 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 418 (601)
..+..++..+...|++++|...+++..+...+.+...+..+...|...|+.++|...++++... .|+..+. ..+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 3333344456667788888888887765431223455666777777888888888888776552 4554443 344445
Q ss_pred HhhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007510 419 CERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (601)
+...| +.+...++.+.+. .-.|....+..++..+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 56666 3666666666543 3334434445555444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=85.10 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007510 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (601)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (601)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-09 Score=109.86 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=189.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666777888888888888888888888888887 8888877777777888888888888888877665
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCHHH
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEV 271 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 271 (601)
.|...+|..|..+|...|++.. |+...+ -...+...+...|--.....++..+.- .+.-||.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-- 142 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-- 142 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH--
Confidence 6677888888888888888765 322221 122233444555555544444444221 1222332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
...+......|.++.+++++..+...... .+. ..+++-+..... ...++........-.|++.+|.+++++-..
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~-~p~--~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWN-APF--QVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCccccc-chH--HHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 23344455667788888877766543221 111 112443333222 233333332222225899999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007510 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (601)
.|+.+.|..++..|.+.|++.+..-|-.|+-+ .+...-+..+++.|.+.|+.|+..|+...+..|...|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999998888877777776 78888888999999999999999999998888888555
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=82.82 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007510 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (601)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (601)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-10 Score=99.20 Aligned_cols=234 Identities=15% Similarity=-0.004 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (601)
|-..-+.+.++|.+.|.+.+|.+.|+.-... .|-..||..|-+.|.+..+++.|+.++.+-.+.- +.++....-+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 3333355667777777777777777766543 3444566667777777777777777777766642 4444444556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (601)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (601)
...+-..++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ .++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 66666777777777777777665433 555566666667777777777777777777773 4566777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007510 356 QKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (601)
+-++.-|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+ .-+...++.|.-.-.+.|++++|+.+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 777777777665433343 3456666666677777777777777766542 2234667777766777777777777777
Q ss_pred HHHH
Q 007510 434 QAKE 437 (601)
Q Consensus 434 ~~~~ 437 (601)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 6655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-07 Score=85.17 Aligned_cols=309 Identities=12% Similarity=0.027 Sum_probs=193.6
Q ss_pred CCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 122 GLKADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 122 g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
.++|...+....+.+++.+ ++...+...+-.+... -++-|+.....+...+...|+.++|...|++.... .|+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhh
Confidence 3344444444555555443 4444444444444332 24557777888888888888888888888887754 33322
Q ss_pred H-HHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007510 199 V-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (601)
Q Consensus 199 ~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (601)
+ .....-.+.+.|+.+....+...+.... .-....|-.-....-...+++.|..+-++..+.+ +.+...+-.-..
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~ 342 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGR 342 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccH
Confidence 2 1111223456677777777666665421 1122223222333345567777887777777665 445556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNW 355 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~ 355 (601)
.+...|++++|.-.|+..+...+ .+..+|.-++..|...|++.+|..+-+...+. ++.+..+...+. ..+. ....-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 77788888888888887766532 26678888888888888888887776665543 233445544442 2222 22234
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 356 QKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
++|.++++.-... .|+ ....+.+...+...|..++++.++++... ..||....+.|.+.+...+.++++.+.|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6778887776653 455 34556667777788888888888888766 577888888888888888888888888877
Q ss_pred HHHCCCCCCH
Q 007510 435 AKEDGVIPNL 444 (601)
Q Consensus 435 ~~~~g~~p~~ 444 (601)
... ++|+.
T Consensus 497 ALr--~dP~~ 504 (564)
T KOG1174|consen 497 ALR--QDPKS 504 (564)
T ss_pred HHh--cCccc
Confidence 776 44443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-06 Score=85.71 Aligned_cols=389 Identities=13% Similarity=0.113 Sum_probs=203.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (601)
.+++...+.+.+.+.+.. |......+..+-.....|+.++|........ ..+.+.|..+.-.+-...++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 456666666666666533 3333333332222333455566665554433 23455666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 007510 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-V 193 (601)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 193 (601)
|+.....+ +.|...+.-|--.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.+...+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66666554 4455556555555556666666555555555432 2234456666666666666666666666655432 2
Q ss_pred CCCHHHHHHHH------HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007510 194 KPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (601)
Q Consensus 194 ~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (601)
.|+...+.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..+..++ +.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-ch
Confidence 34444433222 1233455556665555443221 11111122233444556666666666666666553 22
Q ss_pred CHHHHHHHHHHHHhcCC-----------------------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 268 TPEVYTIAINCCSQTGD-----------------------------------WEFACSVYDDMTKKGVIPDEVFLSALID 312 (601)
Q Consensus 268 ~~~~~~~li~~~~~~g~-----------------------------------~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (601)
+..-|-.+..++.+-.+ .+..-+++..+.+.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 22222223333321111 222333444445555543 2333333
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 007510 313 FAGHAGKVEAAFEILQEAKN----QG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-S 375 (601)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~ 375 (601)
.|-.....+-..++...+.. .| -+|.... +-.++..|-+.|+++.|....+....+ .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 33222221111111111111 11 1344333 345677788888888888888888765 4654 3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
.|..=.+.+...|.+++|..++++..+.+ .||...=+--..-..++...++|.++.....+.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 45555677888888888888888887753 34554444555556678888888888888877764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.4e-07 Score=84.75 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=104.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (601)
.-.|+.-.|..-|+..+.....++. .|-.+..+|....+.++....|+...+.+ +-|+.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456677777777777766554332 25555566777777777777777777765 445667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.=|++..+.. +-+...|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 7777777643 234555666666666777777777777777664 444466777777777777777777777777765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-09 Score=94.66 Aligned_cols=228 Identities=14% Similarity=0.071 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (601)
.|..+|.+.|.+.+|.+.|+.-... .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+.....+.+.+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHHH
Confidence 3444555555555555555444443 334444444445555555555555555444331 22222222333444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (601)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+..++++++.|+. ++..|..+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 455555555555544443 333444444444444555555555555555555544 444444444444444555555555
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 327 LQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 327 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|++....--.|+ ..+|..|.......|++..|.+.|+-....+ ..+..++|.|.-.-.+.|++++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 544443322121 2234444444444555555555555444332 22334444444444455555555555544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-06 Score=80.56 Aligned_cols=417 Identities=14% Similarity=0.103 Sum_probs=234.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHH--HHHHH--H
Q 007510 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC--A 103 (601)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~--~ 103 (601)
-....|...++|++++|.+...+++..+ |.+......-.-...+.+.+++|+.+.+.-... .+++. +=.+| .
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 3445566678999999999999999876 444443333333455678899999776653311 11121 23344 4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-KAGQVAKAF 182 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~ 182 (601)
+.+..++|+..++-.. +.|..+...-...+.+.|++++|.++|+.+.+.+.+ + +...+.+-+ ..+-...+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH
Confidence 6788999998887222 224446666777888999999999999999766422 1 111111100 000000111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH---HHHhccCCHHHHHHHHHHhhh--------CCCC---CCCCH-HHHHHHHHHHHhc
Q 007510 183 GAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKACANA 247 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~--------~~~~---~~~~~-~~~~~ll~~~~~~ 247 (601)
+ +......| ..+|..+. -.+...|++.+|+++++.... ...+ +..+. ..-..+.-.+-..
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 11111122 22333333 234556777777777766511 0000 00000 0112233445566
Q ss_pred CChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHh------------------------------------------
Q 007510 248 GQVDRAREVYKMIHKYNIKGTP----EVYTIAINCCSQ------------------------------------------ 281 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~------------------------------------------ 281 (601)
|+.++|..++..+.+.+. +|. ..-|.|+..-..
T Consensus 238 Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666652 221 111222211110
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 282 ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 282 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (601)
.+..+.+.++-... .+..|. ..+..++..+.+ ......+.+++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 11111111111111 112222 334444444332 2246677777777666543334566777788889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHhhc
Q 007510 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTI----TYSILLVACERK 422 (601)
Q Consensus 357 ~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----t~~~ll~a~~~~ 422 (601)
.|.+++. .+.+.+..|- +...+...+.+.++.+-|..++.+.... .-.+... ++.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 6666554454 4456677777888777788887776531 0112222 233333344668
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhh
Q 007510 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHV 468 (601)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~ 468 (601)
|+-++|..+++++.+. ..+|..+...++.+|++ .-++|..+...+
T Consensus 472 G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 9999999999999985 24577888999999998 677777776654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-07 Score=96.38 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=152.1
Q ss_pred HhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CC
Q 007510 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (601)
....|++++|++.++... .............+.+.|+.++|..+++.+++.+ +.|..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 344566666666665432 1223344555667777788888888888777775 33444444454444222 23
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007510 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
.+...++|+++... -|...+...+.-.+.....+. .+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 55566777776554 233333333322222222232 344445556666753 345555555555444444444444
Q ss_pred HhhhCC------------CCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 222 EMNAEV------------HPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (601)
Q Consensus 222 ~~~~~~------------~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (601)
...... ..-+|... ++..+...|...|++++|.+..+...+.. |..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 433210 00123322 22334555666667777777766666654 3335666666666666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHH
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (601)
|.+.++.....+.. |...-+..+..+.+.|+.++|.+++....+.+..|-... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 76666666665544 555555666666666666666666666655443221111 123344555555555555
Q ss_pred HHHHHHH
Q 007510 360 ELYEHMK 366 (601)
Q Consensus 360 ~~~~~m~ 366 (601)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 5555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-07 Score=92.91 Aligned_cols=289 Identities=14% Similarity=0.142 Sum_probs=151.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhc-----c
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQ-----S 210 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~-----~ 210 (601)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+ |+...|. .+..+..- .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34555555555555443322 12223333444455555555555555555555552 2333332 23233211 1
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
...+...++++++... -|.......+.-.+..-..+ ..+...+..+...|+| .+++.+-..|....+..-..
T Consensus 91 ~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 1344455555555432 12111111111111111111 2233444555555643 45556656565555554444
Q ss_pred HHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 290 SVYDDMTKK----G----------VIPDEV--FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 290 ~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
+++...... + -.|+.. ++..+...|...|++++|++++++.++.. +-.+..|..-...|-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 555444321 0 123332 33455666777788888888888777764 333667777777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHhhcCCH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERKDDV 425 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~ 425 (601)
++.+|.+.++...... .-|...-+-.+..+.++|+.++|.+++....+.+..|-.. .| .-...+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888877777654 2344555556667777888888888777776655433221 12 2345677788888
Q ss_pred HHHHHHHHHHHH
Q 007510 426 EVGLMLLSQAKE 437 (601)
Q Consensus 426 ~~a~~~~~~~~~ 437 (601)
..|++-|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-06 Score=78.15 Aligned_cols=426 Identities=12% Similarity=0.083 Sum_probs=253.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC
Q 007510 29 LHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 90 (601)
...++.+.+...+..|.+.|....+... .+.+.......+..+...++-+.|......+|+.
T Consensus 47 ~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 47 LYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc
Confidence 4455666677788888888877665321 1222223333444445556667777777777643
Q ss_pred C-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 91 T-LSTFNMLMSVCASSKD-SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 91 ~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
- ..-.|.|+..+-+.|- -.++.--+......- +.-.. .|.+..+.+ +..+...=..|-...++|+..+...-
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL~----~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~w 200 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMALQ----VIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKW 200 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHHH----HHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHH
Confidence 2 3334444444433332 112222222222211 10111 111111111 00000001112222234444444444
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHH-HHHHHHHH
Q 007510 169 IDGCAK--AGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKAC 244 (601)
Q Consensus 169 i~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~ll~~~ 244 (601)
+.+++. .++...|...+-.+... -++-|......+.+.+...|+.++|...|+.... +.|+..+ .....-.+
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHH
Confidence 444443 45555565555544433 3455677788899999999999999999998764 3554332 22223334
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (601)
.+.|+.++...+...+.... ..+...|..-........+++.|+.+-.+.++.+.. +...|-.=...+...|+.++|.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHH
Confidence 67888888888777776543 233344555556667788999999998888776443 3444544455677889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HcCCChhHHHHHHHHHHh
Q 007510 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI-TAL-CDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~~~~~m~~ 402 (601)
-.|+...... +.+...|..|+..|...|++.+|.-+-+..... ++.+..+.+.+. ..+ .....-++|.+++++-.+
T Consensus 355 IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 355 IAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 9999887764 567889999999999999999987766654432 133445554442 222 233345789999988776
Q ss_pred CCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhcc
Q 007510 403 LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (601)
Q Consensus 403 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (601)
+.|+. ...+.+...|...|..+.++.+++.... ..||...-+.|-+.+.- .+.++.+...+....+
T Consensus 433 --~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 433 --INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred --cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 57774 4567777889999999999999998887 56788777777776543 3555544444333333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-06 Score=77.73 Aligned_cols=379 Identities=13% Similarity=0.091 Sum_probs=224.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCCh
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (601)
..-++.+.++..|+.+++--...+. .....+..-++..+-..|++++|+..+..+. .++...|-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5567788888899988876654432 1222333344444556788999998887653 45566666666666667788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
.+|.++-... +.++..-..|+...-+.++-++-..+.+.+.. +..--.+|.+..-..-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765543 22333444455566677777776666666543 2233344555544456678888888887
Q ss_pred HhCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh--cCCh---------------
Q 007510 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--AGQV--------------- 250 (601)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~--------------- 250 (601)
... .|+-...|.-+ -+|.+..-++-+.+++.-.... ++.+....+.......+ .|+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 765 45555555433 3556666666666666665543 22223333332222222 1211
Q ss_pred ------------------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (601)
Q Consensus 251 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (601)
+.|.+++--+.+. -+.....|+-.|.+.+++.+|..+.+++.- ..|-......+..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 1222222111111 134555677778999999999998776532 2343333333332
Q ss_pred HH-Hh----cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007510 313 FA-GH----AGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (601)
Q Consensus 313 ~~-~~----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (601)
+. .+ ....+-|.+.|+..-..+..-|.. --.++...+.-..++++.+..+..+..--...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 11 123455666666555544333322 22344555566677888888888887654455555555 7889999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHH
Q 007510 387 GDQLPKTMEVLSDMKSLGLCPNTITYSI-LLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~ 434 (601)
.|.+.+|.++|-+.....++ |..+|.+ |.+.|.+.+.++.|++++-+
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 99999999999887654333 6667765 45677889999998877643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-07 Score=94.15 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 193 (601)
..+...|...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777788888888888877776543 21 12222 2233555667777777777777766531 21
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCC---CCC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 007510 194 KP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPV-DPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (601)
Q Consensus 194 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 264 (601)
.| -..+++.|..+|.+.|++++|...+++..... .+. .|.+ ..++.+...+...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 12345556666777777766666655543210 011 1111 123344444555555555555554433210
Q ss_pred CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 265 IK----GTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 265 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (601)
.. .-..+++.|...|.+.|++++|.++|++.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 00 11234555555555555555555555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-05 Score=79.62 Aligned_cols=464 Identities=11% Similarity=0.155 Sum_probs=291.8
Q ss_pred CCCCCCCCCCCCCCCChhhhHHHHHHHH--hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHH--------H------
Q 007510 9 LQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNV--------C------ 71 (601)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~l~~~--------~------ 71 (601)
+..||..-+..+ +-++.+|-.+| +.|... .-..+|++..+.- |-+..+....++. |
T Consensus 12 EDvpfEeEilRn-----p~svk~W~RYIe~k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~ 84 (835)
T KOG2047|consen 12 EDVPFEEEILRN-----PFSVKCWLRYIEHKAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAY 84 (835)
T ss_pred cccchHHHHHcC-----chhHHHHHHHHHHHccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHH
Confidence 455555544433 56788898888 556554 4556778888764 3333222222211 1
Q ss_pred -hhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 72 -KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 72 -~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
.-++.++.++.++.+|| ..|-..+..+.++|+...-...|+..... -+.-...+|...+......+-++-+..+
T Consensus 85 ~~vn~c~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 01234555555555554 46888888899999999999999887754 2233456788889888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCCHH---HHHHHH
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVD---RAFDVL 220 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~---~A~~~~ 220 (601)
|+..++ .++..-+--|..+++.+++++|-+.+...... ..+.+...|..+-+..++.-+.- ....++
T Consensus 161 yrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999985 45556788888999999999999999887643 12445666777766666554322 233444
Q ss_pred HHhhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------c
Q 007510 221 AEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------T 282 (601)
Q Consensus 221 ~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~ 282 (601)
..+. +.-+| ...|++|..-|.+.|.+++|..+|++....-.. ..-|+.+-+.|.. .
T Consensus 237 R~gi----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 237 RGGI----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred Hhhc----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4443 23455 457899999999999999999999987765221 1222223233321 1
Q ss_pred CC------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH
Q 007510 283 GD------WEFACSVYDDMTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GI 339 (601)
Q Consensus 283 g~------~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 339 (601)
|+ ++-...-|+.+..... .-++..|..-+. ...|+..+-...+.++.+.- .| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChh
Confidence 11 2222333333332211 012333333332 23567778888888877641 22 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----------CCC
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLC 406 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~ 406 (601)
..|..+...|-..|+++.|+.+|++..+...+.- ..+|......=.++.+++.|+++.++.... |-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999999987543221 345666666777889999999998887531 111
Q ss_pred C-------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCC----
Q 007510 407 P-------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG---- 474 (601)
Q Consensus 407 p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~---- 474 (601)
| +...|+.+++.-...|-++....+++++++..+. |.... | |+--+++-..++++.+.|..+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~-N-----yAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII-N-----YAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-H-----HHHHHHhhHHHHHHHHHHHcCCccC
Confidence 1 1234666666667788888899999999876543 33222 2 111133444444444444444
Q ss_pred -CccchhhHHHH---------------HHHHHHHHHHcCCCCcHH
Q 007510 475 -RPQIENKWTSL---------------ALMVYREAIVAGTIPTVE 503 (601)
Q Consensus 475 -~~~~~~~~~~~---------------a~~~~~~m~~~g~~p~~~ 503 (601)
-|..-..|++. |-.+|++.++ |+.|...
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 23344567652 8888988887 7777764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-08 Score=96.30 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhC---CCC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhc-----C--
Q 007510 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (601)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-- 264 (601)
..+...+...|...|+++.|..++...... ..| ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446666888899999999999988876542 112 1233333 334667888899999999999887653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (601)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.. ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122245677888889999999998888876542 1222 222 24566777888899999999999876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--
Q 007510 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KL--KP-TVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (601)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 401 (601)
+.+ -..+++.|...|.+.|++++|.++|+.+... +- .+ ....++.|...|.+.+.+.+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999987742 11 11 23567788899999999999999988743
Q ss_pred --hCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 402 --SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 402 --~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
..|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3332 233 3568899999999999999999998776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-06 Score=83.36 Aligned_cols=350 Identities=13% Similarity=0.113 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
..+++...+++.+.+. +....+.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3466666666665543 2234455555555677899999999988877754 44678899998888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 229 (601)
|......+ +.|...|.-+.-.-++.++++.......++.+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999876 5678888887777788899988888877777652 33556788888888889999999999999887532
Q ss_pred CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 230 VDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (601)
Q Consensus 230 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (601)
-.|+...+.-.. ....+.|.++.|.+.+......- ......-.+-...+.+.+++++|..++..++..+ ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 345555544332 33467788888888876654431 2222334456677889999999999999999874 56
Q ss_pred HHHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHH
Q 007510 304 EVFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMG 347 (601)
Q Consensus 304 ~~~~~~li~-~~~~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~ 347 (601)
..-|...+. ++.+-.+.-++. .+|.... +.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 665554444 333222222222 3333332 233221 2223333
Q ss_pred HHHhcCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 348 ACSNAKNWQKALELYEHMK--------SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
.|-.....+ +.+++. ..| -+|....|+ .++..|-+.|+++.|...++.... ..|
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTP 402 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTP 402 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCc
Confidence 232211111 222221 111 156666665 467888899999999999999987 467
Q ss_pred CH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 408 NT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 408 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
+. .-|..=.+.+.+.|++++|..++++..+.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 75 45777778899999999999999998875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-07 Score=87.99 Aligned_cols=219 Identities=11% Similarity=-0.024 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
+..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44556666666665431 22222 2446666667778888888888888887765 55677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
...|++..+.... +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...|++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888776443 45566777777777888888888888877764 22221222222344567788888888665432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 007510 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (601)
. .|+ .|.. .......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 222 2221 2222334555444 344444421 0 111 23568888888888999999999998888744
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-07 Score=87.09 Aligned_cols=126 Identities=15% Similarity=0.048 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
.|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++..+.. +-+..+|..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45555555566666666666666655543 3345566666666666666666666666665442 223445555555555
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (601)
..|++++|.+.|+..... .|+..........+...++.++|...|...
T Consensus 144 ~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 566666666666655542 232211111112223345556666666443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-06 Score=74.84 Aligned_cols=400 Identities=11% Similarity=0.087 Sum_probs=239.3
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 007510 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (601)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (601)
.++..|-..+ +-|++++|...+.-+...+-.|....+. ++-..--.|.+.+|..+-.+.+. ++-.--.++...-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn--LAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN--LACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh--HHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 4667776666 8899999999999887765433222222 22222234778888887766553 34444455566667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (601)
.++-++-..+.+.+... ..---+|.......-.+++|+++|..+... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 77777777776666532 122334444544555678888988888765 35555555433 35667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcc--CCH---------------------------------HHHHHHHHHhhhCCC
Q 007510 184 AYGIMRSKNVKPDRVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEVH 228 (601)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~~~~~~~ 228 (601)
++.-..+. ++-++...|....-..+. |+. +.|++++-.+..
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--- 282 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--- 282 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---
Confidence 77766654 222333444332222221 221 122222221111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCC
Q 007510 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-------GDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~~a~~~~~~m~~~~~~ 301 (601)
.-|. .-..|+--|.+.+++.+|..+...+. +.++.-|-.-.-.+... .+..-|.+.|+-.-..+..
T Consensus 283 -~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 283 -HIPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred -hChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 1122 22335556888999999988766543 22233222222222222 3456677777666555543
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 007510 302 PDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-A 379 (601)
Q Consensus 302 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ 379 (601)
-|.. .-.++.+.+.-..++++.+-.+..+..--...|...+ .+..+++..|++.+|.++|-++....+ .|..+|. .
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHH
Confidence 3322 2233444455556788888888887765434444444 578899999999999999998875443 3455665 4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
|.++|.+++.++-|..++-++.. +.+..+.. .+..-|-+.+.+--|.+.|.++.. .+|++..|..=-.+|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 56889999999999877665542 33444444 445678999999999999998887 567777776544444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-07 Score=78.17 Aligned_cols=199 Identities=16% Similarity=0.070 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (601)
...|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445556777777777777777777664 3345667777777777777777777777776653 3345566666666777
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
.|++++|.+.|++.... +...--..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776653 1222223466666666667777777777777777665 444556666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
..++.....+. ++..++-..|..-...|+.+.+-+.=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777666655 56666666666666677766666555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-07 Score=77.75 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667888888888888888888876 666778888888888888888888888887776544 5556677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007510 316 HAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (601)
..|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888887776532 2234567777777778888888888888877754 223456667777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.+++.....+. ++..+....|+.-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88887776653 7777777777777778887777766666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-06 Score=82.77 Aligned_cols=304 Identities=15% Similarity=0.025 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--- 202 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--- 202 (601)
..|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..... +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3444455555555666665555555443211 1111 111222334455677777777777766542 223333331
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007510 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (601)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (601)
........+..+.+.+.+.... +..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA----PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhccC----cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 1111122344444444444311 22333 3334445556777778888888887777765 5556667777777778
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCC
Q 007510 282 TGDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKN 354 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~ 354 (601)
.|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 8888888888777665432 1222 2344566677777888888888877654321 1111111 1 22333333443
Q ss_pred HHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHhhc
Q 007510 355 WQKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--N------TITYSILLVACERK 422 (601)
Q Consensus 355 ~~~A~~~---~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~------~~t~~~ll~a~~~~ 422 (601)
...+.+. ......... ............++...|+.++|..++..+......+ . .........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3222222 111111100 1111222346667778888999999988876532110 1 11222233445688
Q ss_pred CCHHHHHHHHHHHHH
Q 007510 423 DDVEVGLMLLSQAKE 437 (601)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (601)
|+.++|.+.+.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8e-06 Score=80.43 Aligned_cols=395 Identities=12% Similarity=0.100 Sum_probs=218.1
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (601)
+|++...--.-.-+||+.+++++|+.+.+.=.... ..+...+.... ...+.+..++|+..++...+.+..+...-..
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAY-c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAY-CEYRLNKLDEALKTLKGLDRLDDKLLELRAQ 118 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHH-HHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence 45555555555567889999999996655322111 11111111111 1234578999999999666666667777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAG 176 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g 176 (601)
.+.+.|++++|+.+|+.+.+.+... +...-..++.+-.. -.+. +.+.... .| ..+|..+- -.+...|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVPE---VP-EDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcc
Confidence 8999999999999999998775321 11111112111110 1111 2222221 22 22333322 3445677
Q ss_pred CHHHHHHHHHHHHhC-------C------CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH-HHHH
Q 007510 177 QVAKAFGAYGIMRSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GALM 241 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~-------g------~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~ll 241 (601)
++.+|+++++..... + ++-...+. ..|.-.+-..|+..+|.+++.........-.|...++ |.++
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV 269 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh
Confidence 788888777776211 1 00001111 1233345566778888887777665432111111111 1111
Q ss_pred HHHHhc----------------------------------------------CChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007510 242 KACANA----------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (601)
Q Consensus 242 ~~~~~~----------------------------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (601)
. .... +..+.+.++-.... +-.|. ..+.++
T Consensus 270 a-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~l 345 (652)
T KOG2376|consen 270 A-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPIL 345 (652)
T ss_pred h-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHH
Confidence 1 1100 11111111111110 11222 333444
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH
Q 007510 276 INCCS--QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSL 345 (601)
Q Consensus 276 i~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 345 (601)
+.... +...+.++.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+...+
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~ai 423 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAI 423 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHH
Confidence 43332 223567788887777665433234566667777888999999999999 555555444 445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 346 MGACSNAKNWQKALELYEHMKSI--KLKPTVS----TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 419 (601)
+..|.+.++-+.|..++...... .-.+... +|.-+...-.+.|+-++|..+++++.+. -++|..+...++.+|
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 77888888877787777766531 0012222 3333444445789999999999999985 367888999999999
Q ss_pred hhcCCHHHHHHHHHHH
Q 007510 420 ERKDDVEVGLMLLSQA 435 (601)
Q Consensus 420 ~~~g~~~~a~~~~~~~ 435 (601)
++. +++.|..+-..+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 876 456776665443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-05 Score=81.45 Aligned_cols=374 Identities=14% Similarity=0.040 Sum_probs=210.1
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 007510 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTL 133 (601)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 133 (601)
.|+..+...+.-.....|++..+.+.|++..+ .....|+.+-..+...|.-..|..+++.-......|+ ...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35666655555556677889999999987543 3456788888888888888888888877654432243 3333333
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCH
Q 007510 134 ITTCA-KSGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDR 197 (601)
Q Consensus 134 i~~~~-~~g~~~~a~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 197 (601)
-..|. +.+.+++++.+-.+.... + -......|..+.-+|... ....++++.+++..+.+ +.|.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 33333 346666766666665541 1 022344455555555431 23567777777776654 2222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCC----------
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIK---------- 266 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 266 (601)
.....+.--|+..++++.|++...+..+-+. ..+...|..+.-.+...+++.+|+.+.+..... +..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222333346666778888888777765422 345556666666677777777777777655432 110
Q ss_pred --------CCHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHH--------HHCC--------
Q 007510 267 --------GTPEVYTIAINCCSQT-----------------------GDWEFACSVYDDM--------TKKG-------- 299 (601)
Q Consensus 267 --------~~~~~~~~li~~~~~~-----------------------g~~~~a~~~~~~m--------~~~~-------- 299 (601)
....+...++..+-.. ++..++.+..+.+ ...|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011122222211100 0111111111110 0000
Q ss_pred -C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007510 300 -V--IPD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (601)
Q Consensus 300 -~--~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (601)
. .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|.+++|.+.|.......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 0 011 1123344445556666666666666655543 4455566666666777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 371 KPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+-++.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.+.|.+.|....+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 2235666777777777777666666 777777643 33466777777777777777777777766654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.8e-06 Score=81.96 Aligned_cols=302 Identities=12% Similarity=0.019 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
.|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444444455555555444444433221 11211 11122233455666677777666665542 223333332 111
Q ss_pred HH----hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 007510 172 CA----KAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (601)
Q Consensus 172 ~~----~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (601)
+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++.... .+.+...+..+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHH
Confidence 21 233344444444331 111222 223334445566667777777777776653 12334455566666777
Q ss_pred cCChhHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCC
Q 007510 247 AGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGK 319 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~ 319 (601)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 7777777777766655431 1121 2344566667777777777777777653322 1111111 1 22222233333
Q ss_pred HHHHHHH---HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHcC
Q 007510 320 VEAAFEI---LQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDG 387 (601)
Q Consensus 320 ~~~a~~~---~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~-----~~~~~~~li~~~~~~ 387 (601)
...+... ........ .............++...|+.+.|..+++.+...... - .+...-...-++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 2222222 11111110 0111122224566778888899999998887653211 0 111122223345578
Q ss_pred CChhHHHHHHHHHHh
Q 007510 388 DQLPKTMEVLSDMKS 402 (601)
Q Consensus 388 g~~~~A~~~~~~m~~ 402 (601)
|+.++|.+++.+...
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999998887664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-05 Score=87.08 Aligned_cols=337 Identities=9% Similarity=-0.040 Sum_probs=208.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--I----EPN--VHTYGALIDGCA 173 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~--~~~~~~li~~~~ 173 (601)
....|+++.+...++.+.......+..........+...|+++++..++......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777766666654221111122223344555667899999999888765421 0 111 112223334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 246 (601)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 23455556677889999999998887642111111 12344556677888
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPD--EVFLSALIDFAG 315 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~ 315 (601)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 1234555666777889999999999886542 11122 234444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHc
Q 007510 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCD 386 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 386 (601)
..|+.+.|...+....... ...... . ....+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111111 0 011224456688999999998776542211111 113456777889
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 387 ~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987642 33322 245666777888999999999999998864
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.4e-05 Score=68.18 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=179.8
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007510 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (601)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (601)
|....-|.-+..-+...|++.+|+..|....+.|+..|.++.+ .|...|+..-|+.=+....+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3444555556666666677888887777776666666665543 566777777777777777654 565432 1222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (601)
...+.+.|.+++|..-|+.+++. .|+..+- ..++.+.-..++- ......+..+.-.|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCch
Confidence 34556777778887777777765 3322111 1111111111111 1112233344556777
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
..|+.....+.+. .+-|...+..-..+|...|.+..|+.=+....+.. ..++..+.-+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777653 24455566666777778888887777776666654 4455666666777777788888877777
Q ss_pred HHHHCCCCCCHHH----HHHH---H------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHH
Q 007510 294 DMTKKGVIPDEVF----LSAL---I------DFAGHAGKVEAAFEILQEAKNQGISVGIIS---YSSLMGACSNAKNWQK 357 (601)
Q Consensus 294 ~m~~~~~~p~~~~----~~~l---i------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 357 (601)
+.++.+ ||... |..+ . ......+++.++.+..+...+......... +..+-.+|...|++.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 776653 34321 1111 0 112234555555555555555432212222 2334445556666777
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 358 ALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|++.-.++.+. .|+ +.++.--..+|.-...+++|+.-|+...+
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77766666653 333 55666666666666667777777776665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-05 Score=77.54 Aligned_cols=421 Identities=13% Similarity=0.069 Sum_probs=225.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (601)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (601)
.+.-|...|..|.-++..+|+++.+-+.|++....- --....|+.+...|...|.-..|..+++.-....-.|+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 445678888888888889999999999998876432 2356678888888888898888888888765443234433333
Q ss_pred HHH-HHHh-ccCCHHHHHHHHHHhhhCCCCC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCC
Q 007510 202 ALI-TACG-QSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANA-----------GQVDRAREVYKMIHKYNIK 266 (601)
Q Consensus 202 ~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~ 266 (601)
.++ ..|. +.+..++++.+-.+......+. ......+..+.-+|... ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 333 3333 3466666666555544311011 11223444444444321 12456677777777776 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (601)
.|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|......=+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 44444444555577888899999999888887666678888888888888889999998888765431 11111111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----------------------------CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007510 347 GACSNAKNWQKALELYEHMKSI----------------------------KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~----------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (601)
..-..-++.+++......+... .......++..+..-.. -+.+.+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhccccc-
Confidence 2222344555544443333210 00001122222211111 0000000000
Q ss_pred HHHhCCCCCC--------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhHHHHHHhhhhhh
Q 007510 399 DMKSLGLCPN--------TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSRRYEKARTLNEHVL 469 (601)
Q Consensus 399 ~m~~~g~~p~--------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~~~~~a~~~~~~~~ 469 (601)
.|...-+.|. ...|......+.+.+..++|...+.+..+. .|-. .+|.-. ++.+..-+..+++..
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~----G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLR----GLLLEVKGQLEEAKE 705 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHh----hHHHHHHHhhHHHHH
Confidence 0222212222 123555666778888888888888877663 2221 112111 111222222333322
Q ss_pred hccCCCccchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHhcc--CCC--CchhHHhhHHHhhCCCcc-ccccccccccc
Q 007510 470 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLP--YNADIRERLVENLGVSAD-ALKRSNLCSLI 544 (601)
Q Consensus 470 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i 544 (601)
.| ...+ -+.|+++-....+|-+ ..| +..+....++.+..+.|. ++.+-.++++.
T Consensus 706 af-------------------~~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 706 AF-------------------LVAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HH-------------------HHHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 22 1111 1223332222222111 111 111122234556677775 45555567777
Q ss_pred cccCCchhHHHHHHHHHHhCCCCCccccCCCCee
Q 007510 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVV 578 (601)
Q Consensus 545 ~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~ 578 (601)
...|..+ +|...|.-+.+ +.+.+|..|.+.+
T Consensus 765 k~~Gd~~-~Aaecf~aa~q--Le~S~PV~pFs~i 795 (799)
T KOG4162|consen 765 KKLGDSK-QAAECFQAALQ--LEESNPVLPFSNI 795 (799)
T ss_pred HHccchH-HHHHHHHHHHh--hccCCCccccccc
Confidence 7778754 78899999988 7888888876643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00011 Score=67.64 Aligned_cols=317 Identities=12% Similarity=0.079 Sum_probs=196.3
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCHH-HHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLS-TFNM 97 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~ 97 (601)
.|-++......=+.|..+|++.+|+..|....+-+ |.+......-...+...|.-..|+.=|..+. .||-. .-..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 44556666667788889999999999999999876 6666555555556666676666766666554 33322 2223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (601)
-...+.+.|.+++|..=|+.+.+...... ... ....+..+...|+...|+.....+++.. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34568899999999999999987642111 111 1223334556678888888888887764 56777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (601)
.|..-..+|...|++..|+.-++...+.. .-++.++.-+-..+...|+.+.++...++..+ +.||...+-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~--- 262 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPF--- 262 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHH---
Confidence 78888888888888888877666655442 33555666666777778888888888777764 46765433211
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007510 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---FLSALIDFAGHAGKV 320 (601)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~ 320 (601)
| ..+.+..+.++.|. .....++|.++++-.+...+........ .+..+-.++...|++
T Consensus 263 Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 263 Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 1 11112222222221 1234455566666666655544332222 223333445556667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
.+|++.-.++.+.. +.|+.++.--..+|.-...++.|+.-|+...+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777666666543 334666666666776667777777777776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-07 Score=86.51 Aligned_cols=150 Identities=21% Similarity=0.174 Sum_probs=74.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----
Q 007510 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN---- 246 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 246 (601)
.+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~-~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI----DEDS-ILTQLAEAWVNLATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCH-HHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcH-HHHHHHHHHHHHHhC
Confidence 344455555555554322 13444444555555666666666666665432 2332 22223333222
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFE 325 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~ 325 (601)
...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 22456666666665543 2455566666666666666666666666665544333 444555555555555555 44555
Q ss_pred HHHHHHHC
Q 007510 326 ILQEAKNQ 333 (601)
Q Consensus 326 ~~~~~~~~ 333 (601)
.+.++...
T Consensus 258 ~l~qL~~~ 265 (290)
T PF04733_consen 258 YLSQLKQS 265 (290)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-05 Score=73.84 Aligned_cols=386 Identities=13% Similarity=0.068 Sum_probs=229.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCC-HHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~ 109 (601)
|..+..|+++.|+..|-+.+... |.|.+.+..-...+.+.|++++|++=-.+.. .|+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 56678999999999999999877 6688777777777888899988876544332 232 457888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHCC---CCCCHHHHHHHHHHHH----------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM---FEVFHEMVNAG---IEPNVHTYGALIDGCA---------- 173 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~g---~~~~~~~~~~li~~~~---------- 173 (601)
+|+..|..-.+.. +.+...++.+.+++.......+. -.++..+...- .......|..++..+-
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 45667777777777221100000 01111111100 0001112222222221
Q ss_pred hcCCHHHHHHHHHHH-----HhCC-------CCC------------C----------HHHHHHHHHHHhccCCHHHHHHH
Q 007510 174 KAGQVAKAFGAYGIM-----RSKN-------VKP------------D----------RVVFNALITACGQSGAVDRAFDV 219 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~~ 219 (601)
...++..|...+... ...| ..| | ..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111112222211110 0001 111 0 11245577778888889999998
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG------TPEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+...... ..+..-++....+|...|.+......-+...+.|... -...+..+..+|.+.++++.++..|.
T Consensus 247 y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 247 YAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 8887653 3444555666677888887777666655555444211 01122334456777888999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (601)
+.+.....|+..+ +....+++........-.+...-.. .-.=...+.+.|++..|.+.|.+++... +-|
T Consensus 323 kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~D 391 (539)
T KOG0548|consen 323 KALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD-PED 391 (539)
T ss_pred HHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC-Cch
Confidence 8776555443322 2223344444333332222111111 1122456677888888888888877665 456
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
...|..-..+|.+.|.+..|+.-.+...+. .|+ ...|..=..++....+++.|.+.|.+.++.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777888888888888888887777666663 444 344655566666777888888888777763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-07 Score=84.52 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLL 432 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~ 432 (601)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-+..|...++......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344555555554332 23444444555555555555555555555544321 11233444444444444444 3344444
Q ss_pred HHHHH
Q 007510 433 SQAKE 437 (601)
Q Consensus 433 ~~~~~ 437 (601)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.7e-05 Score=78.45 Aligned_cols=149 Identities=10% Similarity=0.038 Sum_probs=83.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (601)
..+...|...|-+..+.+ +.-......++.+++...+...|.+.|++.- ..+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344677777777777766 3444556667778887778888888888653 45666777888888888888888777
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
.-..-+.. ...-...|..+.-.|.+.++...|..-|+...+.. +.|...|..++.+|..+|++..|.++|.+..
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 32221110 00001112222223334444444444444444432 2344445555555555555555555554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00015 Score=82.18 Aligned_cols=331 Identities=9% Similarity=0.006 Sum_probs=208.9
Q ss_pred hhHHHHHHHHHHhhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHhc
Q 007510 73 SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAKS 140 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~ 140 (601)
..|+++.+...+..++. .+..........+...|++++|...++...+.-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566777777776641 2222333444556678999999999987754311 111 11222333456688
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccC
Q 007510 141 GKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQSG 211 (601)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g 211 (601)
|++++|...++.....-...+. ...+.+...+...|++++|...+++.....- .+. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987763111121 3456666777889999999999988764210 111 234455566788899
Q ss_pred CHHHHHHHHHHhhhCC--CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhc
Q 007510 212 AVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQT 282 (601)
Q Consensus 212 ~~~~A~~~~~~~~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 282 (601)
++++|...+++..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 9999999887754421 1111 1 22334455566777899999999988765431 111 233455566778899
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 007510 283 GDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAK 353 (601)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 353 (601)
|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+........... ...+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9999999999887542111 011111 1122344567899999988776543221111 112346677888999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007510 354 NWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (601)
+.++|...+++.... +..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999987642 22222 245666778888999999999999998875
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=85.53 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=160.4
Q ss_pred HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (601)
+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+.++.+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 567788889888888887652 3456678888888888888888999999988887 677888888888999999989
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 287 FACSVYDDMTKKGVIPDEVFLSALID-----------FAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~-----------~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
.|++.++.-+...++ |..+.. .......+....++|-++ ...+..+|+.++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999888876554321 110000 011111223334444444 344445788888888888989999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 007510 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 433 (601)
+++|.+.|+...... +-|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999888754 34678899999999999999999999999888 67874 445556668999999999888776
Q ss_pred HHH
Q 007510 434 QAK 436 (601)
Q Consensus 434 ~~~ 436 (601)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.9e-05 Score=68.11 Aligned_cols=288 Identities=12% Similarity=0.040 Sum_probs=170.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CCHHHHHH-HHHHHHhcCC
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNM-LMSVCASSKD 107 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~ 107 (601)
+.-.||+..++.+|++++..-.++. |.+..-...+.-.+....++..|...++++.. |...-|-. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 4457899999999999999887776 55555555566666667789999999888652 33333322 2345667788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
+..|+.+...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 99999998887642 222222222222 23567888888888887643 24445555555566889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC-----------CHH--------H-------HHH
Q 007510 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----------DHI--------T-------IGA 239 (601)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~--------~-------~~~ 239 (601)
+...+-+--.....||.-+ +..+.|+.+.|++...++...+-.-.| |+. . +|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 8887754344566777554 455678889999988887764321111 111 1 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
-...+.+.|+.+.|.+.+..|+-+. ...|+++...+.-. --.+++.+..+-+.-++..++- ...||..++-.||++.
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhH
Confidence 1222345566666666665554332 22344444333211 1223344444444444444433 3455666666666666
Q ss_pred CHHHHHHHHHH
Q 007510 319 KVEAAFEILQE 329 (601)
Q Consensus 319 ~~~~a~~~~~~ 329 (601)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.1e-08 Score=58.98 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-05 Score=84.72 Aligned_cols=232 Identities=12% Similarity=0.040 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007510 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (601)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (601)
+-+...|-..+.-....++.++|.++.++....- ++. --...|.++++.-..-|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTI-NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4456677778888888899999999988887531 111 113467777777777788888889999888764 2235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (601)
+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.++.+.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788889999999999999999999987633 36678888888888888888999999888765211 1345556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (601)
.+.|+.+.++.+|+.....- +.....|+..|+.-.++|+.+.+..+|++....++.|-. ..|...+..=...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887653 445678999999999999999999999999888877653 445555544444555444
Q ss_pred HHH
Q 007510 428 GLM 430 (601)
Q Consensus 428 a~~ 430 (601)
+..
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00055 Score=67.19 Aligned_cols=388 Identities=12% Similarity=0.127 Sum_probs=223.8
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007510 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (601)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 134 (601)
|.+......+++-+..+ ..+++++.++++. +-....|..-|+.-...++++....+|.+.... ..+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 66777777777766665 7999999999875 345678999999999999999999999998865 34566677666
Q ss_pred HHHHhc-CChhH----HHHHHHHH-HHCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 135 TTCAKS-GKVDA----MFEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 135 ~~~~~~-g~~~~----a~~~~~~m-~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
+--.+. ++... ..+.|+-. .+.|+.+ +...|+.-+.. |..+.+++...++|+++....+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 544332 33332 22334433 3345433 33456665543 344567788888898887643211111
Q ss_pred HHH------HHHHHH-------hccCCHHHHHHHHHHhhhCCCCCCCCHHH---------------HHHHHHHHHhcCCh
Q 007510 199 VFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAGQV 250 (601)
Q Consensus 199 ~~~------~li~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------~~~ll~~~~~~g~~ 250 (601)
.|+ .=|+.. -+...+..|.++++++..-..|+.....+ |..+|. +-+.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcCCc
Confidence 221 111111 12334566777766654322232221111 333333 2222111
Q ss_pred h---------HHHHHHHHHH-hcCCCCCHHHHHHHHHHH-------HhcCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 007510 251 D---------RAREVYKMIH-KYNIKGTPEVYTIAINCC-------SQTGD-------WEFACSVYDDMTKKGVIPDEVF 306 (601)
Q Consensus 251 ~---------~a~~~~~~~~-~~~~~~~~~~~~~li~~~-------~~~g~-------~~~a~~~~~~m~~~~~~p~~~~ 306 (601)
. ...-+++... -.+.. +.+|.---..+ ...|+ -+++.++++.....-..-+..+
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111222222 12222 23333222222 22232 3555566655444322223344
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 007510 307 LSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALIT 382 (601)
Q Consensus 307 ~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~ 382 (601)
|..+.+.--.. ...+....+++++...-..--.-+|..+++.-.+..-+..|+.+|.+..+.+..+ ++...++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 44433321111 1255556666666554322224567788888888888999999999999877767 7778888888
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 007510 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIGM 453 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~ 453 (601)
-||. ++.+-|.++|+.=.+. ..-+..--...++-+.+.++-..++.+|++....++.|+. .+|..+|+-
T Consensus 411 y~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 7774 6788899999874432 2223344457778888899989999999999888666654 467777753
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-08 Score=59.03 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.0004 Score=68.19 Aligned_cols=380 Identities=14% Similarity=0.084 Sum_probs=223.8
Q ss_pred HhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 007510 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 146 (601)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-..-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 34568999999999753 4678889999999999999999999877766654 455 67899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHhcc-------
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG------IMRSK---NVKPDRVVFNALITACGQS------- 210 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~~~~~li~~~~~~------- 210 (601)
+.-|.+-++.. +.|...++-+..++.... .+.+.|. .+... ........|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988764 456777787887772110 1111111 11100 0000112233333222111
Q ss_pred ---CCHHHHHHHHHHhh-----hCC-----CCCCC------------C----------HHHHHHHHHHHHhcCChhHHHH
Q 007510 211 ---GAVDRAFDVLAEMN-----AEV-----HPVDP------------D----------HITIGALMKACANAGQVDRARE 255 (601)
Q Consensus 211 ---g~~~~A~~~~~~~~-----~~~-----~~~~~------------~----------~~~~~~ll~~~~~~g~~~~a~~ 255 (601)
.++..+.-.+.... ..+ .+..| | ..-...+.++.-+..+++.+.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111111111000 000 00011 1 0113345555556666777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHH
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-------ALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~a~~~~~ 328 (601)
-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+ .+..+|.+.++++.++..|+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777666654 33444566666777777777666666555554432 111222 23335555677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
+.......|+ ...+....+++.+..+...-. .|... ---.=...+.+.|++..|+..+.+++... +-
T Consensus 323 kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7655443332 223344445555555544432 23321 11122566789999999999999999864 44
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhhHHHHHHhhhhhhhccC
Q 007510 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM---FKCIIGMCSRRYEKARTLNEHVLSFNS 473 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~---~~~li~~~~~~~~~a~~~~~~~~~~~~ 473 (601)
|...|+.-.-+|.+.|.+..|..-.+..++ +.|+... ....+--..++|++|.+..+..+..++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 567899999999999999999999888887 4555432 222222222467777766655555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00011 Score=70.72 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=130.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
.+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33344555677778888888777654 334556666666666666 5678888888777654 44566677665555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc---CCh
Q 007510 176 GQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV 250 (601)
Q Consensus 176 g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~ 250 (601)
|+. ++++..++++.+.. +-|..+|+....++...|+++++++.++++.+.. ..+...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccc
Confidence 653 56677777777654 4466777777777777777888888888777642 33444555544444433 222
Q ss_pred ----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 251 ----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 251 ----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
++.......+.... +.+..+|+-+...+... +...+|.+.+.+....++. +...+..|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555555554 55667777777766662 3345576777666554433 55666666666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0011 Score=69.77 Aligned_cols=321 Identities=14% Similarity=0.192 Sum_probs=149.2
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (601)
|..+-..+..+++..+-..+-+++++++.-.+ .++.+......++-...+. +.....++.+++..-|.. .+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 34444555666777777777777777766433 2233333333332222111 112222222222211110 112234
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
..++-+++|..+|+... .+....+.||. ..++++.|.+.-++.. .+..|..+..+-.+.|.+.+|+
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 44555666666665542 23344444443 2344555555444432 3345666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
+-|-+.. |+..|..+++...+.|.+++-.+.+.-.+++ .-+|. .-+.|+-+|++.+++.+.+++..
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc----
Confidence 5554332 4555666666666666666666666554443 12233 22345666666666555444331
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (601)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (601)
-|+..-...+..-|...|.++.|.-+|... .-|..+...+...|++..|...-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 233334444455555555555554444321 22444444444555554444332221 134444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
-.+-.+|...+.+.-| +|...++-....-..-++.-|...|-+++-+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4444444443333222 222222222223344455555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=79.06 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=146.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (601)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345666666666666665553 3355666666666666666666666666666553 33445555555666666666666
Q ss_pred HHHHHHhhhCCCCC----C--CCHHHHHHHHHHHHhcCChhHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 217 ~~~~~~~~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
++.++.-....+.. . ++...-.. ........+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 66665543321000 0 00000000 1111222233344444433 33333467777777777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-- 367 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 367 (601)
+.|+..+...+. |..+|+.|...++...+.++|+..|++.++.. +--+.+...|.-.|...|.+++|.+.|-....
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 888877776544 66778888888877778888888888777653 12234555566677788888887777665542
Q ss_pred -C------CCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007510 368 -I------KLKPTVSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 368 -~------~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (601)
. ...++...|.+|=.++.-.++.+-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112344667776666666666664443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-05 Score=75.73 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=103.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007510 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (601)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (601)
+.+......+.+|+.+++.+... ..-..-|..+..-|+..|+++.|.++|.+. ..++--|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 34455667788888888776643 222334666777888888888888888643 23566778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
+|++|.++-.+. .|.......|-+-..-.-..|++.+|.+++-.+ | .|+ ..|.+|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 888888876543 344445556666666666778887777766432 2 233 34566777777777766655
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
+-.. ..-..|...+..-|...|+...|...|-+
T Consensus 875 k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 875 KHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4321 11122333444445555555555544433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-05 Score=80.28 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=106.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 007510 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (601)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (601)
.+...+.+.|-...|..+|+++. .|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+...+..
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 44445555555555555555543 2444555555555555555555555443 455555555555555555
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 212 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.+.
T Consensus 472 ~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 555555555443221 00011111122455555555555544443 33445555555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
|..-....+. +...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|-..+....+.|.+++|.+.+.++.
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5554443221 33455555555555555555555555555554 3334444445555555555555555555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0018 Score=66.77 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=91.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-
Q 007510 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS- 210 (601)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 210 (601)
+++...|-.|+.++|-++-++- .|......|.+.|-..|++.+|...|.+.. +|...|+.|-.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEND 1007 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcC
Confidence 3444444455555555444332 355666677788888888888888777654 222223222211
Q ss_pred --------------CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--------HHhc--CCC
Q 007510 211 --------------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM--------IHKY--NIK 266 (601)
Q Consensus 211 --------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~--~~~ 266 (601)
.+.-.|-++|++.. . -+...+..|-+.|.+.+|+++--+ +... +..
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~g-----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEELG-----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHcc-----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22333444444421 0 112234457788888777765311 1222 223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHHHh
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTK----------KG----------------VIPDE----VFLSALIDFAGH 316 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~~----------------~~p~~----~~~~~li~~~~~ 316 (601)
.|+...+.-...++...++++|..++-...+ +| -.|+. ..+..+...|.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 4566666666666667777766666532211 11 12333 345566667888
Q ss_pred cCCHHHHHHHHHH
Q 007510 317 AGKVEAAFEILQE 329 (601)
Q Consensus 317 ~g~~~~a~~~~~~ 329 (601)
.|.+..|-+-|.+
T Consensus 1158 QG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQ 1170 (1416)
T ss_pred ccchHHHHHHHhh
Confidence 8888777665544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.4e-05 Score=80.07 Aligned_cols=245 Identities=12% Similarity=0.047 Sum_probs=185.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKP---DRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+=|++..... +-+...|-..|......++.++|.+++++.+.. ++.- -...|.++++.-...|.-+...++|+++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3344444332 445678999999999999999999999998753 1111 1245777777777778888999999998
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 007510 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP- 302 (601)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 302 (601)
.+- -....+|..|...|.+.+..++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++.+.++.-++-
T Consensus 1524 cqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1524 CQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 763 2335678899999999999999999999998864 3567899999999999999999999999987653221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 007510 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNAL 380 (601)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l 380 (601)
......-.+..-.+.|+.+.+..+|+...... +-....|+..+++-.+.|+.+.++.+|+++...++.|-. ..|.-.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 22344555556678899999999999988764 556789999999999999999999999999988776642 455555
Q ss_pred HHHHHcCCChhHHHHHHHH
Q 007510 381 ITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~ 399 (601)
+..=-++|+-+.+..+=.+
T Consensus 1678 LeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHHhcCchhhHHHHHHH
Confidence 5555555665544444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-05 Score=81.34 Aligned_cols=233 Identities=11% Similarity=0.079 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (601)
..-..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..++ +|++..|..+.+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 334456677888999999999998864 4667888999999999999998887772 788899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (601)
......-+++|.++++..-.. .-..+.......+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 988888899999998875432 11111122234789999999999877765 5567889899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.++.+
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999988643 3346899999999999999999999999999876 33455566677778899999999999998875
Q ss_pred CC-CCCCHHHHHHHHHH
Q 007510 438 DG-VIPNLVMFKCIIGM 453 (601)
Q Consensus 438 ~g-~~p~~~~~~~li~~ 453 (601)
.. ...|..+..-++..
T Consensus 616 ~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhhcccchhhHHHHHH
Confidence 31 11255555545544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0019 Score=68.12 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=162.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 007510 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (601)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (601)
..+...+-+++|..+|++.. .+..+.+.|+. .-+..++|.+.-++.. .+..|+.+..+-.+.|.+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 33445555666666666542 35555555554 3355566655544432 3467888888888888888
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 215 ~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
+|.+-|-+. .|...|.-++....+.|.+++-.+.+....+..-.|. +=+.||-+|++.++..+..+++
T Consensus 1122 dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred HHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh--
Confidence 887776442 3445777788888888888888888777766654443 3457778888888877655443
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007510 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (601)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 374 (601)
.-|+......+.+-|...|.++.|.-+|.. +..|..|...+...|+++.|.+.-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 235666777777778888888887777753 445677777788888888887665543 366
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
.+|-.+-.+|...+.+.-| +|.-.++.....-..-++.-|...|-+++.+.+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 7888888888776665433 2333223334444666777777777777777666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00025 Score=68.17 Aligned_cols=210 Identities=7% Similarity=-0.004 Sum_probs=128.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
-..+...++.++|+.+.+++++.. +-+..+|+..-..+...| ++++++..++++.... +.+..+|+.....+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 333445667888888888888764 335566776666666666 5788888888888764 3455567655444545554
Q ss_pred --HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH--
Q 007510 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW-- 285 (601)
Q Consensus 213 --~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~-- 285 (601)
.++++.+++.+... -+.+..+|+...-.+.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 122 ~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 122 DAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred hhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 25667777777653 23456677777777777788888888888888776 45556676665554443 222
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 286 --EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 286 --~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
++.++...+++...+. |...|+.+...+... ++..+|...+.+..+.+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3455555555555433 455565555555542 23344656655554433 3344555556666653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.1e-05 Score=67.58 Aligned_cols=314 Identities=13% Similarity=0.083 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (601)
+.+.+..+.+..++..|++++..-.++. +.+......|..+|....++..|-.-|+++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444555666777777776666553 335556666666777777777777777776654 344333321 223444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (601)
+.+.+..|+++...|... |+...-..-+. .....+++..+..++++...+ .+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHH
Confidence 566677777776666532 12111111111 123446666666666654321 22333333444445667777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHH
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-----ALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~ 326 (601)
.|.+-|+...+.+--.....|+.-+. ..+.|+++.|++...++.++|+...+. ++ -.+++- ..|+ -..+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr-svgN---t~~l 235 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR-SVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh-cccc---hHHH
Confidence 77777766655432223345554443 345566777777777777666542111 10 000000 0000 0000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007510 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (601)
+. ++ =+..+|.-...+.+.|+.+.|.+-+-.|.-. .-..|++|...+.-.- ..+++.+..+-+.-+...+
T Consensus 236 h~----Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n- 306 (459)
T KOG4340|consen 236 HQ----SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN- 306 (459)
T ss_pred HH----HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-
Confidence 00 00 0122333334566888999999888888621 1234666655443222 2344555555555555532
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 406 CPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
+-...||..++-.||+..-++.|..++.+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 23467899999999999988888888754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-05 Score=72.87 Aligned_cols=187 Identities=10% Similarity=-0.012 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-- 163 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-- 163 (601)
+.....+..+...+.+.|+++.|...|+.+.... +.+. .++..+..++.+.|++++|...++++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 4456677888888899999999999999988754 2222 466778888999999999999999998763 11222
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC
Q 007510 164 -TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (601)
Q Consensus 164 -~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 233 (601)
++..+...+.+. |+.+.|.+.|+++... .|+. ..+..+..... .. ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~--------- 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA--------- 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------
Confidence 455555556554 6788899999888766 3332 22222211100 00 0000
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+....
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0112455678899999999999998877631 2345788899999999999999999988887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.002 Score=63.47 Aligned_cols=406 Identities=11% Similarity=0.132 Sum_probs=241.9
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCHHHHHHHHH
Q 007510 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (601)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (601)
+-++.+|..|+ +...+++++..++++...- |....+....++.-...++++...++|.+-. .-+...|...|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34566788888 3559999999999999754 6666665555666666788999999998643 346777887776
Q ss_pred HHHh-cCChHH----HHHHHHHHH-HcCCCC-CHHHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCCCHHH
Q 007510 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKA-DCKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (601)
Q Consensus 101 ~~~~-~g~~~~----A~~~~~~m~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (601)
---+ .++... -.+.|+... +.|+.+ .-..|+.-+..+ ....+++...++|.+++..-+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4332 233333 223333333 445443 233455555433 334466677888888875321111112
Q ss_pred HH------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHhccCC--
Q 007510 165 YG------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSGA-- 212 (601)
Q Consensus 165 ~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g~-- 212 (601)
|+ .=|+.. -+...+..|.++++++.. +|+..+..+ |-.+|.-=-..+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22 111111 124456778888887753 343322222 4444432211111
Q ss_pred ----H--HHHHHHHHHhhhCCCCCCCCHHH-HH----HHHHHHHhcCCh-------hHHHHHHHHHHhcCCCCCHHHHHH
Q 007510 213 ----V--DRAFDVLAEMNAEVHPVDPDHIT-IG----ALMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (601)
Q Consensus 213 ----~--~~A~~~~~~~~~~~~~~~~~~~~-~~----~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (601)
. ....-++++...- .+..|+... +. ..-+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111122222211 133343221 11 112234444554 444555554443322223334444
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007510 275 AINCCSQT---GDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (601)
Q Consensus 275 li~~~~~~---g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (601)
+...--.. ...+.....+.+++..- ..| ..+|...+..-.+..-++.|..+|.++.+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 43321111 13556666666665542 333 3567788888888888999999999999988777 788889999877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (601)
| .++..-|.++|+--... ...+..--...++-+...++-..|..+|++....++.|+. ..|..+|.-=+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 56789999999965443 1233444456778888889999999999999988777774 679999999999999999
Q ss_pred HHHHHHHHHH
Q 007510 428 GLMLLSQAKE 437 (601)
Q Consensus 428 a~~~~~~~~~ 437 (601)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-05 Score=68.34 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (601)
...+..+....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+.- .-+....+.+.-.+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHH
Confidence 333334444444455555555544444332 3444445555555555555555554444444331 12233344444444
Q ss_pred hccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (601)
.-.|+.+.|..++...... -..|..+-..+.......|+++.|..+-.
T Consensus 179 ~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 4445555555544444332 12233344444444444455555544443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00077 Score=65.66 Aligned_cols=219 Identities=13% Similarity=0.050 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 213 ~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
+.++...-+.+......-.|+...+...+........-..+..++.+..+. .....+.-..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 444454555554332223455555555554443333333333333333331 11234444445566788899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (601)
+.+...-+. |...+....+.+...++.++|.+.++.+.... +......-.+..+|.+.|++.+|..+++...... +-
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~ 406 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PE 406 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CC
Confidence 888776433 56666777778888899999999999888774 2236667778888999999999998888877553 56
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH
Q 007510 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKCI 450 (601)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l 450 (601)
|+..|..|..+|...|+..++..-.-+ ++...|+++.|...+....+. ...|+..-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dar 468 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADAR 468 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 788899999999988888877654433 456788888888888887765 233455555556
Q ss_pred HHHHH
Q 007510 451 IGMCS 455 (601)
Q Consensus 451 i~~~~ 455 (601)
|+...
T Consensus 469 i~~~~ 473 (484)
T COG4783 469 IDQLR 473 (484)
T ss_pred HHHHH
Confidence 65543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0011 Score=67.36 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=119.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (601)
+.+......+.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455667777777777766542 22334666677777777877777777643 2345566777777888
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+.|.++-.+.. +.+.....|.+-..-.-+.|++.+|.+++-.+.. |+ .-|.+|-+.|..++.+++..
T Consensus 808 ~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 77777766553 2233444555555555667777777776644322 22 23566777777777776665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
+--... -..|...+..-+...|++..|..-|-+. .-|.+.+++|-..+.|++|.++-+
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 432111 1234555666677778888887766432 235566777877888888776644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-05 Score=67.85 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHHH
Q 007510 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTME 395 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~ 395 (601)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444443333 3344444444444444444444444444444432 22334444444432 33333 244555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 396 VLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 396 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++++..+. .| +...+..+...+...|++++|...|+++.+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55444442 22 233344444444445555555555554444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.9e-05 Score=69.74 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV---HTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
....+..+...+.+.|++++|...|+++.... +.+. .++..+...|.+.|++++|...|+++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445555555556666666666666555432 1111 24455555555566666666666655543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.4e-05 Score=66.43 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFEI 326 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~~ 326 (601)
.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344444444444433 344444444444444444444444444444443322 33333333333 233333 2444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
+++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 133 l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444443 22334444444444444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00011 Score=65.56 Aligned_cols=155 Identities=17% Similarity=0.092 Sum_probs=72.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007510 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (601)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (601)
+-..+...|+-+....+...... ....|.......+....+.|++..|...|.+..... ++|...|+.+..+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444444444444433221 112233333334445555555555555555555443 44555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (601)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (601)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555554443222 33334444444444555555555555544443 223444444444555555555555443
Q ss_pred H
Q 007510 363 E 363 (601)
Q Consensus 363 ~ 363 (601)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00018 Score=64.27 Aligned_cols=150 Identities=20% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh---
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--- 246 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 246 (601)
..|++.|++++|++...... +......=+..+.+..+.+-|.+.++.|... .+..+.+.|..++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhc
Confidence 34555566666655554411 1112212223344455556666666665531 233444444444433
Q ss_pred -cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 007510 247 -AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA-AF 324 (601)
Q Consensus 247 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~ 324 (601)
.+.+.+|.-+|+++.+.- +|++.+.+-...++...|++++|..+++..+.+... ++.+...++......|...+ ..
T Consensus 185 ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 234556666666665543 555566666666666666666666666666555443 44455444444444444433 23
Q ss_pred HHHHHHHH
Q 007510 325 EILQEAKN 332 (601)
Q Consensus 325 ~~~~~~~~ 332 (601)
+.+.+++.
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 34444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00055 Score=66.64 Aligned_cols=114 Identities=14% Similarity=0.039 Sum_probs=60.5
Q ss_pred HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (601)
+...|+.++|++.++.+... .+.|...+......+.+.++..+|.+.++++.... +.....+-.+..+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 33455556666666555543 22333444444555555666666666666555543 223445555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (601)
+|+.+++........ |+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 666665555554333 55556666666665555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.3e-05 Score=65.21 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+..++..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555666677777777776666554 4456666666666667777777777777766654 4456666666666667
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007510 175 AGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (601)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=64.46 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 007510 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (601)
..+...|++++|...|+...... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444444433 2334444444444444444444444444444332 223344444444444444444
Q ss_pred HHHHHHHHHHh
Q 007510 392 KTMEVLSDMKS 402 (601)
Q Consensus 392 ~A~~~~~~m~~ 402 (601)
+|...|+...+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00021 Score=75.91 Aligned_cols=236 Identities=10% Similarity=0.093 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ..+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444556666777666 456655553 22223333333333333333332 2355688888899
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (601)
....+.|..++|..+++.... +.|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875 3565 4566677888999999999999999999887 777888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
++++|..+|++....+.. +..++..+..++...|+.++|...|+...+.. .+....|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985543 57888899999999999999999999988764 34445555544 23344445566
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHcC
Q 007510 364 HMKSI----KLKPTVSTMNALITALCDG 387 (601)
Q Consensus 364 ~m~~~----~~~~~~~~~~~li~~~~~~ 387 (601)
++.-. |....+.+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 55432 2222344555566655543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00047 Score=73.34 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (601)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (601)
...+...+-.|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 44567788888888899999999999999998875 566778888889999999999999999998887654 5667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|+...+.. .+....|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7788889999999999999998844 4557888888899999999999999999887653 355566665543 2
Q ss_pred hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhc
Q 007510 390 LPKTMEVLSDMKSLG----LCPNTITYSILLVACERK 422 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~ 422 (601)
...-..+++++.-.+ ...........|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 334445566654332 222234455555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0087 Score=61.99 Aligned_cols=285 Identities=16% Similarity=0.172 Sum_probs=148.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQVL 115 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 115 (601)
.-|-+++|.+++.+-.+-+ ++-+++.+.|.+++|+++-+.-..-. ..+|.....-+-..++.+.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 4556666666666555433 23334445566666665543221111 123333333344445555555555
Q ss_pred HHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 116 RLV----------QEAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 116 ~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
++. .... -..|...|.-....+-..|+.+.|+.+|..... |-++++..|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 432 1111 012333444444444555666666666655542 555666666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc---------
Q 007510 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------- 247 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 247 (601)
+.++|-++-++- | |......|.+.|-+.|++.+|..+|-+.. ++...|+.|-..
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----------afsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ-----------AFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHhcCHHHHHHHH
Confidence 777766654432 2 45556667777777788888877776654 222233322111
Q ss_pred ------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHC--CCCCCHHHHHHHH
Q 007510 248 ------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--------MTKK--GVIPDEVFLSALI 311 (601)
Q Consensus 248 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~--~~~p~~~~~~~li 311 (601)
.+.-.|-+.|++. |. -...-+..|.+.|.+.+|+++-=+ ++.. ....|+...+...
T Consensus 1016 al~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1222233333322 11 122334567788888887766321 2222 2334666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKN----------QGI----------------SVGI----ISYSSLMGACSNAKNWQKALEL 361 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----------~~~----------------~~~~----~~~~~li~~~~~~g~~~~A~~~ 361 (601)
+.++...++++|..++....+ +|+ .|+. .+...+...|.+.|.+..|-+-
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 777777777777776654332 111 2222 2445667788888888888777
Q ss_pred HHHH
Q 007510 362 YEHM 365 (601)
Q Consensus 362 ~~~m 365 (601)
|.+.
T Consensus 1168 fTQA 1171 (1416)
T KOG3617|consen 1168 FTQA 1171 (1416)
T ss_pred Hhhh
Confidence 7654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00093 Score=71.90 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=102.1
Q ss_pred CCCCCCCCCCC-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC
Q 007510 13 YPNGKHANYAH-DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91 (601)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 91 (601)
|.+....+|+. +...-....+.+...+++++|+++.+...+.. |....++...+-++.+.++.+++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------
Confidence 44444445543 23333333344448999999999999777765 44444444444455555544443322
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
.++.......++.....+...|... ..+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+.-.
T Consensus 88 -----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~ 159 (906)
T PRK14720 88 -----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATS 159 (906)
T ss_pred -----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 4444444455554444455555543 3345577778888888888888888888888876 5578888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
|+.. ++++|++++.+....
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH
Confidence 8888 888888888777643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00049 Score=73.95 Aligned_cols=237 Identities=11% Similarity=0.051 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4556777777777777777777777765554 3333 3333333455555654444433 2 22
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (601)
.......++..+..+...+.. ...+...+..+..+|-+.|+.+++..+++++.+.+ +.++.+.|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222222333222222223322 12333466667777777788888888888877777 66777777777777777 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
+++|.+++.+.... +...+++..+.+++.++.... +.+...+. .+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~----------------~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL----------------RIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------HHHHH
Confidence 77777777665543 444556677777777766653 22222222 22222
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 365 MKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (601)
Q Consensus 365 m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 420 (601)
+... +...-+.++-.+-..|...++++++..+|+...+.. +-|.....-++..|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2221 223445566677778888888999999999888742 224555566665554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0043 Score=55.70 Aligned_cols=246 Identities=12% Similarity=0.038 Sum_probs=137.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (601)
.-.|.+..++..-...... +.+...-..+-++|...|.......- +.. +-.|.......+......-++.+.
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~---~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE---GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc---ccCChHHHHHHHHHHhhCcchhHH
Confidence 3346666665554444332 12333333455666666655432221 111 112333333222222222333332
Q ss_pred H-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 253 A-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 253 a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
- ..+.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+.+.|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2334444444433333344444556778888888888776521 22222222334556677888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 332 NQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+.+..++...|++++|..++++.+.+. .-
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 654 45566655555543 45678888888888764 36888888888888888888888888888887753 33
Q ss_pred CHHHHHHHHHHHhhcCCHHH-HHHHHHHHHH
Q 007510 408 NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 437 (601)
++.|...++-.-...|...+ -.+.+.+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 56666666665556665543 3445555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.016 Score=61.58 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=120.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007510 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
+...|+..|-+..+.. +--...|..|...|+...+...|.+.|++..+.+ ..+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555665555555442 1124578888888888778888888888887664 4456677778888888888888888743
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (601)
...++. ....-...|....-.|.+.++...+..-|+...+.+ +.|...|..+..+|...|++..|.++|.+.....+.
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 332210 001111122223344667778888888888887776 667788888888888888888888888877665322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
+...--.....-+..|.+.++...+..+..
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 111111122234567888888888877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.2e-05 Score=62.01 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007510 342 YSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
+..+...|.+.|++++|...+++
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-06 Score=51.00 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (601)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00017 Score=60.32 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=94.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007510 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (601)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (601)
.++.+.... +.+......+...+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 345555543 2345567778888999999999999999998764 4577889999999999999999999999988753
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (601)
+.+..++..+...+...|++++|...+++..+ ..|+...+..+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 44567788888899999999999999999988 44665554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0054 Score=54.69 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=41.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (601)
..|++++|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+.+..+.-+ .|...|.-+...|...|+++.|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3455555555555555544 34444444444444444444455554444444322 245555555555555555555555
Q ss_pred HHHHHHHC
Q 007510 326 ILQEAKNQ 333 (601)
Q Consensus 326 ~~~~~~~~ 333 (601)
.++++.-.
T Consensus 176 ClEE~ll~ 183 (289)
T KOG3060|consen 176 CLEELLLI 183 (289)
T ss_pred HHHHHHHc
Confidence 55554443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.9e-06 Score=49.57 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (601)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.3e-06 Score=49.11 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.036 Score=58.35 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=124.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHH
Q 007510 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 111 (601)
++..+++..|++...++.++- |........-+-...+.|..++|..+++.. ...|..+...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 456777888888888877765 332222222222334567777777776643 234667777777888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHH
Q 007510 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (601)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 181 (601)
..+|++.... -|+......+..+|.+.+++.+-.+.--++-+. .+.+...+=++++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888887754 455666677777777777665433322222221 13344555555555544211 2345
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 182 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (601)
.+.++.+.+.+ -.-+..-...-...+...|.+++|..++..-.... -...+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55666665543 11111112222234455677888887774322211 11222333344555666667777766666666
Q ss_pred HhcC
Q 007510 261 HKYN 264 (601)
Q Consensus 261 ~~~~ 264 (601)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6655
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.012 Score=52.58 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
|..+.-+....|+.+.|...++.+..+- +.+..+-..-.-.+-..|++++|+++++.+++.++. |.+++..=+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHH
Confidence 3444444555566666666666655542 333332222222233456666666666666655432 44444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 44444555444444433 24445555555555555555555555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-05 Score=48.08 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (601)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (601)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0006 Score=66.98 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
.|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33344444455555555555554442 22 12223444444444445555554444332 223333343444444455
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
+.+.|.++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555544443 222 234555555555555555555444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00088 Score=65.85 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (601)
....+++..+...++++.|..+|+++.+.+ | .....++..+...++-.+|.+++++....... +...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556666666777888888888877765 3 34445677777777777888888877765433 556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.+.++++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77888888888888887764 4556688888888888888888888877765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0021 Score=54.47 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 277 NCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
..+...|++++|...|+........|+. .....+...+...|++++|+..++..... ......+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 4444445555555555544443321111 12222333444444444444444332211 1222333344444444444
Q ss_pred HHHHHHHHH
Q 007510 355 WQKALELYE 363 (601)
Q Consensus 355 ~~~A~~~~~ 363 (601)
.++|+..|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=54.92 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEF 287 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 287 (601)
.++...+...++.+.....+........-.+...+...|++++|...|+.+......+. ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555443111111112222333445555666666666655555431111 1233344555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (601)
|+..++...... .....+......+...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666654432221 1233444455555666666666665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00067 Score=66.98 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (601)
.+.+......+++.+....+++++..++.+..........-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34566666667777777777777777777766542222222234457777777877778887777777777777777888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (601)
|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888887777776666555666666655555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0005 Score=67.86 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (601)
.+.+......+++......+.+++..++.+..... ...-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455556666666666666666776666665541 1112234456677777777777777777766666777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
|.|++.+.+.|++..|.++...|.......+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777766666555445555554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.6e-05 Score=45.29 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00063 Score=52.43 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (601)
..|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777776665542 12234455555555555555555555
Q ss_pred HHHHHH
Q 007510 168 LIDGCA 173 (601)
Q Consensus 168 li~~~~ 173 (601)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00055 Score=52.75 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 199 (601)
|-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666777999999999999999999 899999999999887643 34567889999999999999999
Q ss_pred HHHHHHHHhc
Q 007510 200 FNALITACGQ 209 (601)
Q Consensus 200 ~~~li~~~~~ 209 (601)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.03 Score=57.04 Aligned_cols=376 Identities=12% Similarity=0.102 Sum_probs=179.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHhcCChhHH
Q 007510 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT----------TCAKSGKVDAM 146 (601)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~----------~~~~~g~~~~a 146 (601)
+++|.++.+. .|.+..|..+.......-.++.|...|-+... -+.......|-. .-+--|.+++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 5566666554 46677888888777777777778777755432 111111111111 12234788999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
.++|-++-+++ .-|..+.+.|++-.+.++++.--.. .-+.-...|+.+...++....+++|.+.+..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99988876542 3455667778877777666532110 0011235677777777777777777777755321
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (601)
....+.++.+..++++-+.+-..+++ +....-.+..++...|.-++|.+.|-+- +. |..
T Consensus 825 -----------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-pka- 883 (1189)
T KOG2041|consen 825 -----------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-PKA- 883 (1189)
T ss_pred -----------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-cHH-
Confidence 11234444454444444443333322 2234444555555555555555544221 11 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQG-----------ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKL 370 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~ 370 (601)
.+..|...+++.+|.++-+...-.. +-.+..+ .--|..+.+.|+.-.|-+++.+|.+ .+.
T Consensus 884 ----Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~ 958 (1189)
T KOG2041|consen 884 ----AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYV 958 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccC
Confidence 1233444444444444333211000 0000001 1234556666666666666655543 222
Q ss_pred CCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHhhcCCHH
Q 007510 371 KPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCP--NTITYSILLVACERKDDVE 426 (601)
Q Consensus 371 ~~~~~----~~~~-li~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p--~~~t~~~ll~a~~~~g~~~ 426 (601)
++-.. ...+ |+.-+ -++|..++|..+++.-... +.-- ....|..+..--...|.++
T Consensus 959 p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~ 1038 (1189)
T KOG2041|consen 959 PYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVK 1038 (1189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHH
Confidence 22111 1111 11111 1356666776655542210 0111 1233444445556678888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHH-HHH-hhHHHHHHhhhhhhhccCCCccchhhHHHHHHHHHHH
Q 007510 427 VGLMLLSQAKED-GVIPNLVMFKCIIG-MCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492 (601)
Q Consensus 427 ~a~~~~~~~~~~-g~~p~~~~~~~li~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 492 (601)
.|.+.--.+.+. .+-|...+|+.|-- +|+ |.+.-|-+-.-.+..|..........+..+|+++|.+
T Consensus 1039 ~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk 1107 (1189)
T KOG2041|consen 1039 DALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSK 1107 (1189)
T ss_pred HHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhcc
Confidence 887765555544 46666777764432 222 2333332222222222222222223455667777754
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.6e-05 Score=44.46 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0022 Score=52.06 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=6.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 007510 173 AKAGQVAKAFGAYGIM 188 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m 188 (601)
.+.|++++|.+.|..+
T Consensus 13 ~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 13 LKAGDYADAIQAFQAF 28 (119)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=50.39 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555554432 2223444445555555555555555555544432 223334445555555555
Q ss_pred CHHHHHHHHHHHH
Q 007510 177 QVAKAFGAYGIMR 189 (601)
Q Consensus 177 ~~~~A~~~~~~m~ 189 (601)
+.+.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=50.82 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGALID 170 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~ 170 (601)
+..+...+.+.|++++|...|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555556666666666655543211 01234444555556666666666666655543100 11334555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007510 171 GCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.+.+.|+.++|.+.++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 412 YSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
+..+...+...|+++.|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0026 Score=60.46 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
+|..++....+.+..+.|..+|.+..+.+.. +...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3444444444444444444444444432211 11222222222 11123333344444444433 233444444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.+.++.+.|+.+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555544432 11111 2444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0033 Score=62.04 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (601)
..|++++|+..|.++++.. +.+...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445555555555444443 2234444444444555555555555555544432 1233444444444555555555555
Q ss_pred HHHHHHh
Q 007510 396 VLSDMKS 402 (601)
Q Consensus 396 ~~~~m~~ 402 (601)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.03 Score=50.27 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCChhhhHHHHHHHHhcCCHHHHHHHH
Q 007510 10 QFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLL 48 (601)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~ 48 (601)
+|.--.+++..+.+.++....+...|+.+.....++++-
T Consensus 6 ~~~~a~~~~~~~ad~~~~~f~~l~~l~~~~~~~~~~~~~ 44 (366)
T KOG2796|consen 6 GEKAAAKRQVLNADSVEQSFVGLKQLISCRNWRAAVDLC 44 (366)
T ss_pred hhHHhhhhhhhccCCchhhhhhHHHHHHhhhhHHHHhhh
Confidence 444445667778888888888888888766665555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0024 Score=55.88 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 007510 89 NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (601)
..+-.+|..+++.+.+. |..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45556666666665543 5566666677788888888888888888877644 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
.- .-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123455678888888888888888888888888776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0064 Score=50.77 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
....-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3333444445566667777777776666553 3345555556666666667777777776666655 3456666666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007510 172 CAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (601)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6667777777666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0056 Score=60.42 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=54.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (601)
.+...|+++.|++.|++.++.. +.+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666554 3355566666666666666666666666666553 3345566666666666666666
Q ss_pred HHHHHHHHHhC
Q 007510 181 AFGAYGIMRSK 191 (601)
Q Consensus 181 A~~~~~~m~~~ 191 (601)
|+..|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0046 Score=58.80 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
.+|..+++..-+.+..+.|+.+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777777777777776443 2233444444444 22345556677777776654 22356666777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
+.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654 2222 247788888778888888888888887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0089 Score=49.92 Aligned_cols=94 Identities=7% Similarity=-0.112 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
...+...+...|++++|.++|+-+....+. +..-|-.|..++-..|++++|+..|....... +.|+..+-.+..++.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444555666666666666665554433 44455555555566666666666666665555 3455555556666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 007510 352 AKNWQKALELYEHMKS 367 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~ 367 (601)
.|+.+.|++-|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.017 Score=59.65 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+...|..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555554444455666666666666665 335656666666666666666666666666655
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0032 Score=55.06 Aligned_cols=116 Identities=19% Similarity=0.296 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
..|-.+|..+++.+.+. |.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45667777777777644 5666666777778888888888888888777654 3332 112222221
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMI 260 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 260 (601)
.- --.+-+-|++++++|... |+-||..++..++..+.+.+.. .+..++.-.|
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~--gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENN--GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 113456789999999874 8999999999999999877763 3333333333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.18 Score=48.54 Aligned_cols=285 Identities=12% Similarity=0.064 Sum_probs=143.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (601)
+.+..++.+|+..+...++.. +.++.-|..-...+...+++++|.--.+.-.+.. +-......-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 344456666666666666654 3344445555555555566666554444433321 11112222333333334444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHH
Q 007510 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~ 260 (601)
.+.++ |...+ ....++..++..... +.-+|...++..+ ..++...|+.++|..+--.+
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s-~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPS-HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhccccc-ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 44433 11111 111222222222211 1112444444433 23455677888888777777
Q ss_pred HhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 261 HKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 261 ~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
.+.+ .. ..+..++++ +.-.++.+.+...|.+.+..+ |+...-... -...+.+..+...|
T Consensus 196 lkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~~k~le~~k~~g---- 256 (486)
T KOG0550|consen 196 LKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMMPKKLEVKKERG---- 256 (486)
T ss_pred Hhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhhHHHHHHHHhhh----
Confidence 6655 22 233333333 334567778888887776653 343322111 11122223333333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSI 414 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 414 (601)
+-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.--++..+ +.|.. ..|..
T Consensus 257 --------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ 326 (486)
T KOG0550|consen 257 --------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLR 326 (486)
T ss_pred --------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHH
Confidence 2345777888888888777642 3345555666666677788888888877777655 22221 12222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 415 LLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
-..++.-.+++++|.+.++...+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233445577888888888877764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.016 Score=50.64 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (601)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555555666666666655554332221 2345555555555666666666665555542 2234444445555
Q ss_pred HHhcCCHHH
Q 007510 349 CSNAKNWQK 357 (601)
Q Consensus 349 ~~~~g~~~~ 357 (601)
|...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555555433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.02 Score=59.24 Aligned_cols=145 Identities=10% Similarity=-0.078 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 007510 264 NIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQEA 330 (601)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~ 330 (601)
..+.+...|...+.+.... +....|..+|++..+..+. ....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4467788999888886543 2367899999999887543 3455555544443221 123334444433
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007510 331 KNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (601)
Q Consensus 331 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (601)
... ..+.++..+.++.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++..+ +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 234456778777777777899999999999999864 7888999999999999999999999999887 56776
Q ss_pred HHHH
Q 007510 410 ITYS 413 (601)
Q Consensus 410 ~t~~ 413 (601)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00069 Score=51.09 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (601)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443211 1222233344444444444444444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.11 Score=48.26 Aligned_cols=185 Identities=10% Similarity=-0.008 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (601)
.+...+-.....+.+.|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...|++..+.-..-...-+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 34444444555567789999999999999876422 23322 456678889999999999999988763211122333
Q ss_pred HHHHHHHh--cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 167 ALIDGCAK--AG---------------Q---VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 167 ~li~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
..+.+.+. .+ + ...|+..|+++++. |=.+.-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH
Confidence 33333331 11 1 12344444444443 33333344555444443321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (601)
+ - ..--.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|......+.
T Consensus 174 ---l--a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---L--A-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---H--H-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 0 11124566788888888888888888775 223345667778888888898888888776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=50.83 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=6.3
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007510 346 MGACSNAKNWQKALELY 362 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~ 362 (601)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.43 Score=50.70 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHhhCC--CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007510 73 SQKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (601)
..+++..|+....++. .||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3466777777766653 23332 3333443 45778888888888877765533 77888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------HHHHHH
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFD 218 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~ 218 (601)
+|+..... .|+......+..+|.+.+.+.+-.++=-+|.+ .++-+...|-++++...+... ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 88888765 57777777788888887776544443333332 223344555556655544321 223445
Q ss_pred HHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
.++.+..+. |-.....-...-...+...|.+++|.+++. ...+.-.+.+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 555555442 211111112222333455666777777773 333333333444455566667777777777777777776
Q ss_pred CCC
Q 007510 298 KGV 300 (601)
Q Consensus 298 ~~~ 300 (601)
.|.
T Consensus 255 k~~ 257 (932)
T KOG2053|consen 255 KGN 257 (932)
T ss_pred hCC
Confidence 654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.075 Score=50.75 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=85.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALIT 382 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~ 382 (601)
.+..|...|++..|-..+.. +...|... |++++|.+.|++..+ .+ .+. ...+..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 33455666666666555443 44456666 788888888877653 12 111 234566778
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 007510 383 ALCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIG 452 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~--~~~~~~li~ 452 (601)
.+.+.|++++|.++|++....-.. .+.. .|...+-.+...||+..|.+.+++.... ++..+ ......||+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 889999999999999987654222 2221 2333444667789999999999988753 34333 233445555
Q ss_pred HHHhhHHHHHHhhhhhhhccCCCccc
Q 007510 453 MCSRRYEKARTLNEHVLSFNSGRPQI 478 (601)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (601)
+|-. .....+.+++..|+...+.+
T Consensus 244 A~~~--~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 244 AYEE--GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHT--T-CCCHHHHCHHHTTSS---
T ss_pred HHHh--CCHHHHHHHHHHHcccCccH
Confidence 5432 11223455667777765544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=50.24 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777788888999999999988876543222 4577888888888999999999988888753 3356667777
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007510 169 IDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~ 185 (601)
...|...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 77777777755544433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.016 Score=50.54 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (601)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445556666666677777777777665543222 12355666666666777777777776666543 223344445555
Q ss_pred HHH
Q 007510 348 ACS 350 (601)
Q Consensus 348 ~~~ 350 (601)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0058 Score=56.02 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=49.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 428 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 428 (601)
.+.+++++|+..|.+.++.. +.|.+-|..=..+|.+.|.++.|++-.+..+. +.|. ..+|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 34555555555555555432 23444444455555555555555555555444 3333 24455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH
Q 007510 429 LMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~l 450 (601)
.+.|++.++ ++|+..+|..=
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~n 188 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSN 188 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHH
Confidence 555555554 55555544443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0066 Score=55.68 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPK 392 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~ 392 (601)
..+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+..... .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 456788999999999888875 557777778888999999999998888877764 343 5788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 393 TMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
|++.|++.++ +.|+..+|-.=|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999999887 78888877665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0018 Score=46.41 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007510 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (601)
|+++|++++|++.|+++.... |.+..+...++.++...|++++|.+.++++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888888888888776 6677777777777778888888888887765
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
++..+...+...|++++|...++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.12 Score=47.79 Aligned_cols=55 Identities=9% Similarity=-0.006 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 345 LMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
+...|.+.|.+..|..-|+.+.+. +.+........++.+|...|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455555555555555555432 0011122333444555555555555444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.037 Score=44.53 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12233333444455555555555554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.033 Score=51.54 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|...|-.|...|...|+.+.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444444444444444444444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0034 Score=44.99 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
.|++++|+++|+.+.+.. +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444432 223444444444444444444444444444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.31 Score=44.10 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---- 345 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 345 (601)
.+.+.++..+.-.|.+.-....+++..+.....++...+.+.+.-.+.|+.+.|...|+...+..-..|....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4566777777788888888888888888776668888888888888899999999999877664333343333333
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 346 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 346 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
...|.-.+++..|...|.++.+.. +.|+...|.=.-+..-.|+..+|++.++.|.+ ..|...+-.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 334556777888888888777643 34455555444444446888888888888887 3555554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.058 Score=43.40 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMN 224 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 224 (601)
+-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444443222 1122233334444444444444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.005 Score=43.63 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 12334444444444444444444444444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.039 Score=51.04 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (601)
+-|...|-.|...|...|+.+.|..-|....+.. ++|...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455556666666666666666666665555442 33444444444443322 12345555565555442 2233344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 201 NALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
..|...+...|++.+|...++.|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444555555666666666665554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.12 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444555555555555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.61 Score=45.00 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (601)
+.+..|.-+...|+...|.++-++. . .||...|-..+.+++..+++++-..+-.. .-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566677777766665443 2 35777777777888888887776664332 123466777777787
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
+.|+..+|..+..++. +..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888777777766521 134556677777777776654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0073 Score=42.74 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=18.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
.+.|++++|.+.|+.+++.. +-+...+..+...+...|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444433332 113333333333334444444444444333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.38 Score=41.16 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC-CCCCCHHHH
Q 007510 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (601)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 237 (601)
.|++.-...|..+....|+..+|...|++...--..-|....-.+.++....++...|...++.+.+-.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555556666666777777777777777666544444556666666666666777777776666554211 11233 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
..+.+.+...|.+.+|+.-|+..... -|+...-.-....+.+.|+.+++..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 34556666666776677666666654 23333333333445555655554433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.41 Score=43.05 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
....+.+.|++.+|...|+.+...... --....-.++.++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455666777777777776654211 11334445566666777777777777766554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=42.18 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (601)
+..|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3344444455555555555555555554443 223444444444555554 3555555554444
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.82 Score=43.94 Aligned_cols=286 Identities=15% Similarity=0.116 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHhhC---CCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHH
Q 007510 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (601)
.|+-..|+++-.+. ...|......++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 35666666655432 23344444444443 34469999999999999852 2222 233444445578999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHhc---cCCHHHHHHHH
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVV--FNALITACGQ---SGAVDRAFDVL 220 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~li~~~~~---~g~~~~A~~~~ 220 (601)
.+.-+..-..- +--...+.+.+...+..|+++.|+++.+.-+.. -+.++..- -..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88888776542 334678899999999999999999999877653 23444432 2234433221 23455566555
Q ss_pred HHhhhCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 007510 221 AEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (601)
Q Consensus 221 ~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 298 (601)
.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+.. |.+.++...+ +.+.|+. ++.-+++..+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 55443 3455332 2234567899999999999999998875 4444443332 3455553 2333332221 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007510 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVST 376 (601)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (601)
.++| +..+...+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.+++..+.+..+. |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4556677778888889999888776666554 577778877777654 459999999999998874 33344
Q ss_pred HH
Q 007510 377 MN 378 (601)
Q Consensus 377 ~~ 378 (601)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=41.87 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDM 295 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m 295 (601)
+|..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444444443 333444444444444444 344444444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.89 Score=43.92 Aligned_cols=107 Identities=10% Similarity=0.019 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
+.+..+.-+...|....|.++-.+. . .|+...|..-+.+|+..++|++-.++... +.+++-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566678877777765543 2 46777888888888888888877665332 234577888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (601)
+.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 888888888877762 21 33445566777777776553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.059 Score=51.61 Aligned_cols=264 Identities=15% Similarity=0.067 Sum_probs=137.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHH--HHC--CC-CCCHHHHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEM--VNA--GI-EPNVHTYGALIDGC 172 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m--~~~--g~-~~~~~~~~~li~~~ 172 (601)
+++.|+......+|+..++.| ..|. .+|..|.++|.-.+++++|++++..= +.+ |- .-...+...|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 677788888888888887776 3343 34666667777777788877765321 110 00 00111222233344
Q ss_pred HhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHhccCC--------------------HHHHHHHHHHhhhCC
Q 007510 173 AKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAEV 227 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~~ 227 (601)
--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555432211 1111100 012233344455543332 233334433211100
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007510 228 --HPV-DPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (601)
Q Consensus 228 --~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 297 (601)
.+- -.--..|..|.+.|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.|+.-..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 000 00112344455555556778887766643322 121 11124567777888888888888888776432
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 298 --KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 298 --~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.|- .....+.-+|...|.-..++..|+.++.+-..- ...-....+.+|..+|...|..++|..+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 112334556666777777788888777653321 112345677788888888888888877766544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.56 Score=42.21 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 347 GACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~ 366 (601)
..|.+.|.+..|..-++.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 33444444444444444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.95 Score=43.51 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHCCCCC
Q 007510 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIP 442 (601)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~g~~p 442 (601)
..+-..+..+-...|++..|..--+...+ ..|....|..|.+.-.. .||-.++++.+.+..+..-+|
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 34444444555555555555544444433 34555555555544322 355555555555555543333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.078 Score=49.55 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFN 201 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 201 (601)
..|...+..+.+.|++++|...|+.+++. .|+. .++..+...|...|++++|...|+.+...- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445556677777777776654 2332 355566666667777777777777766431 011233344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
.+...+...|+.++|..+|+.+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566667777777777766653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.56 Score=40.14 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 007510 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (601)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (601)
.|++..-..+..+....|+..+|...|++...--+--|....-.+.++....+++..|...++.+-+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 456666666777777777777777777777665555667777777777777777777777777766532 1222 33
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
-.+.+.|.-.|.+.+|..-|+.... ..|+...-.....-+.++|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4456677777777777777777776 456655544444455666666655544433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.071 Score=49.83 Aligned_cols=51 Identities=20% Similarity=0.061 Sum_probs=23.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
.+.|++++|...|+.+... .|+. ..+..+...|...|++++|...|..+..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555555555555443 2221 2333344444445555555555544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.031 Score=47.28 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVV 199 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 199 (601)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555555666666666666665543 34555666666666666666666666655532 355555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.1 Score=44.48 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
.|..|.+-....|..+.|++.--.+.+ ..+-|....|+.+.-+.+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 344455556678889998876544433 1366777788877666665555554444444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.032 Score=40.46 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|.+.+++++|.++++.+.... +.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444332 12233333344444444444444444444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.11 Score=42.31 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (601)
..|+..+..+++.+|+..|++..|+++++..... .+++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 4556666666666666666666666666665554 34555555565555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.045 Score=39.69 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=21.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444332 2233333344444444444444444444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.42 Score=40.32 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=81.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC--CHHHH--HHHH---HHHHhcC
Q 007510 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP--TLSTF--NMLM---SVCASSK 106 (601)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--~~li---~~~~~~g 106 (601)
.|.+.++.++|+..|.++.+.|.-............+..+.|+...|...|+++... .+... ..-+ -.+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 456889999999999999998876666666666677777888899999999876421 11111 0111 1245667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007510 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (601)
.++......+-+-..+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777776666665544333444555666666677777777777777664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.054 Score=45.83 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV-----NAGIEPNVHTYG 166 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~~ 166 (601)
....++..+...|+++.|..+.+.+.... +.|...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45567777888999999999999999876 6688999999999999999999999999875 358888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.5 Score=44.95 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 007510 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (601)
Q Consensus 44 A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (601)
.+.-++++.++|..|.... ++..+.-.|.+.+|.++|++
T Consensus 619 li~EL~~~k~rge~P~~iL----lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL----LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH----HHHHHHhhhhHHHHHHHHHH
Confidence 3334444555554332221 22334445666666666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.18 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhh-------------hCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY- 263 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 263 (601)
.++..++.++++.|+++....+++..- ....++.|+..+..+++.+|+..|++..|.++.+.+.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344444555555555554444443321 112244556666666666666666666666666555432
Q ss_pred CCCCCHHHHHHHHHHH
Q 007510 264 NIKGTPEVYTIAINCC 279 (601)
Q Consensus 264 ~~~~~~~~~~~li~~~ 279 (601)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3444455555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.15 Score=43.04 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 113 (601)
.+|++++|..+|.-+...+ +++..+..-++..+...+++++|+..|... ...|+...-.....+...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 5555555555555555544 344444444444444455555555555421 12233333334444445555555555
Q ss_pred HHHHHHH
Q 007510 114 VLRLVQE 120 (601)
Q Consensus 114 ~~~~m~~ 120 (601)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.18 Score=48.41 Aligned_cols=132 Identities=12% Similarity=-0.031 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAK----NQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK----SIKL-KPTVS 375 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~~~ 375 (601)
.|..|...|.-.|+++.|+..++.-. +.|-+ .....+..|.+++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666778888887776532 22211 123456677777888888888888777543 2221 11223
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH----hCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMK----SLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+.-+|...|.-...+++|+.++.+-+ +.+ ..-....+.+|..++...|..++|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567777777777888888776522 111 122346678888888888888888877765543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.094 Score=47.71 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=73.7
Q ss_pred HHHHhhCC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 81 FRFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (601)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (601)
.+.|..++ +.|-.+|-+.+..+... +..+--...++.|.+.|+..|..+|+.|++.+-+..-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi---------- 123 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI---------- 123 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------
Confidence 34455555 45666777666665543 44555556667777778777888887777765333211
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHh
Q 007510 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEM 223 (601)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 223 (601)
|.. .+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+.. .+..+++-.|
T Consensus 124 ------P~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 124 ------PQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred ------cHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 110 1111111121 23345788888888888888888888888888877653 2333333333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.24 Score=49.06 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCCCCCCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH---HHHHHHHHHHhhhHHHHHHHHHHhh
Q 007510 14 PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK---VYHARFFNVCKSQKAIKEAFRFFKL 86 (601)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (601)
........|.+.......-..|.+.|++++|+..|++.++.+ |.+. ..+..+...+...|+.++|+..|++
T Consensus 64 ~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 64 AKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333445667777777777777778888888888888877766 4333 2234444444444455555544444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.7 Score=41.46 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=79.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHH---HHHhhCCCCCHHHHHHHHHH--HHhcCC
Q 007510 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLSTFNMLMSV--CASSKD 107 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~li~~--~~~~g~ 107 (601)
+++++.+|-.+|.++.+.-... ....+.+.++.++-. ++++.-. ..+++-.+ ...|-.+..+ +-+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8899999999999987653211 113334444444432 2233222 22222222 2234444433 456788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 007510 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (601)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (601)
+.+|.+.+..-..+ +-.| |-..=+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888766544 2221 2222345667778889999998888877653 3347888888866
Q ss_pred HHHHh
Q 007510 170 DGCAK 174 (601)
Q Consensus 170 ~~~~~ 174 (601)
-++.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 66654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=3.9 Score=42.99 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
||-..|-.=+.+++..+++++-.++-+..+ .+.-|...+.+|.+.|+.++|.+++-+
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 344444444444444444444433322221 123344444444455555555544443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.94 Score=45.95 Aligned_cols=169 Identities=12% Similarity=0.165 Sum_probs=102.0
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (601)
.+..+..-|...+-+++++++.++.+.=.-.. .-+......+++++.+.|..+.|+.+-. |+ ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 44566677777888888888777664111111 1123335566777777788888877632 22 23345566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (601)
+.|+++.|.++.+. .++...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 77888888776543 33677888888888888888888888877652 5667777778888877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+-+.....| -++....++.-.|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777766664 2555555666667777777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.5 Score=45.00 Aligned_cols=213 Identities=12% Similarity=0.147 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVK 194 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 194 (601)
....+.+=+..|...|.+++|.++ |+.+... ..+.--++.-=.+|.+-.+ +-+...-+++++++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334444555566677777776543 2222111 1122334444556665544 33445556777888877
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH------------HHHHh
Q 007510 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIHK 262 (601)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------------~~~~~ 262 (601)
|+.... ...++-.|.+.+|-++|.+--. + +..+.+|.....++.|.++. ++-.+
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~~G~-----e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKRSGH-----E------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHHcCc-----h------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 876653 3446667888888888876422 1 12233344444444444333 22111
Q ss_pred --cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 263 --YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD------MTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 263 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
++++. -.+-...+...|+.++|..+.-+ +.+.+- ..+..+...+..-+-+...+..|.++|..|-
T Consensus 699 WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 699 WARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 01111 01223444556666666554321 111111 1133344444444455566666777776653
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
.. ..+++.....+++.+|..+-++..+
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 22 3566677777777777777776654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.9 Score=41.12 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (601)
...|...+..-.+..-++.|..+|-+..+.+ ..+++.++++++..++ .|+...|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777887778888899999999998888 5678888899987665 56778888888864433 3555444 4556
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
.-+..-++-+.|..+|+...+. +..+ ...|..+|.--..-|++..+..+-++|.. .-|...+-....+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 6677788889999999965543 3334 56788999888899999888888888876 344443333333333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.8 Score=42.04 Aligned_cols=129 Identities=10% Similarity=0.148 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHH
Q 007510 26 SEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (601)
Q Consensus 26 ~~~~~~~~~l~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (601)
......|..|+..+ ..+.++.+++.++..- |.-..+...++..-.+.|..+.+.++|++.. +-++..|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34556787888443 3355555666666543 6667777777777788899999999999754 4566678777
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 99 MSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 99 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
+..+. ..|+.+.....|+..... |.. .....|...|..-..++++.....+|++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66544 457888888888887764 221 24556888888888889999999999999863
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.38 E-value=3 Score=40.83 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 408 NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
|--.+.+++.++.-.|+.+.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667777888888888888888888765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.5 Score=39.42 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
..|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 4445555555555444432 2223334444445555555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.8 Score=36.68 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (601)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (601)
..-+...|++++|..+|+-+...+.. +..-+..|..++-..+++++|...|......+ .-|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33455678888888888776665443 44455666666666777888887777665544 23444445566677778888
Q ss_pred HHHHHHHHHHHh
Q 007510 356 QKALELYEHMKS 367 (601)
Q Consensus 356 ~~A~~~~~~m~~ 367 (601)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.3 Score=41.18 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007510 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (601)
++..|++.+|..+|+...... +.+......+.+.+...|+.+.|..+++.+|
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334555555555555555444 3333334444444555555555555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=3.8 Score=39.96 Aligned_cols=258 Identities=12% Similarity=0.030 Sum_probs=124.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~ 109 (601)
+...++.++.+|+..+...++.. |.+..++..-+..+...+++++|.--..+- .+.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44557888889999888888776 555555444333334445555544332211 1111111111122222222222
Q ss_pred HHHHHHH---------------HHHHcC-CCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 007510 110 GAFQVLR---------------LVQEAG-LKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG- 171 (601)
Q Consensus 110 ~A~~~~~---------------~m~~~g-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~- 171 (601)
+|.+.++ ...... -+|...++..|- .++.-.|+.++|.+.--..++.. ....+...+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 2222222 111111 123334444332 44556678888887776666542 22233333333
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHhccCCHHHHHHHHHHhhhCC-CCCCCCHHH
Q 007510 172 -CAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-------------ALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (601)
Q Consensus 172 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 236 (601)
+--.++.+.|...|++.+..+ |+-..-- .-.+-..+.|.+..|.+.+.+.+... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 334677788888888777653 3322211 11122345666777777766655321 112233344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
|........+.|+..+|+.--+...+.+. .-...+..-..++...++|++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555666666666666665555431 11112222233344455666666666655443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.082 Score=38.91 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666555554321 011 11 2345555566666666666666666554
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.082 Score=38.91 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
.+++.+...|...|++++|+..|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666555421 10 011 3345556666666666666666666543
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=6.2 Score=42.15 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007510 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (601)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (601)
...++...+..+...|++++|...|-+.. .-++ ..+|.-|....+..+--..++.+.+.|+. +...-..|+.+|.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYi 442 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHH
Confidence 34456666777778899999988776532 2121 23455566666677777788888888854 4455567889999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (601)
+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++ -..+++++|++
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~ 511 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALR 511 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHH
Confidence 9988887766655443 2211 01123444555555555555554433321 222222222 23355666666
Q ss_pred HHHHh
Q 007510 219 VLAEM 223 (601)
Q Consensus 219 ~~~~~ 223 (601)
.+..+
T Consensus 512 yi~sl 516 (933)
T KOG2114|consen 512 YISSL 516 (933)
T ss_pred HHhcC
Confidence 55544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.15 Score=50.40 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007510 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (601)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (601)
+.+...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|.+.|+.++|+..+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 445678888889999999999999999988875 4553 358889999999999999999999988742 11 2
Q ss_pred HHHHHH--HHhhcCCHHHHHHHHHHHHHCCC
Q 007510 412 YSILLV--ACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 412 ~~~ll~--a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
|..+.. .+....+.++..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 11223334466667777776654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.4 Score=44.70 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555555555666665555433211 1223334556666665543222 24456666666666
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....|- ++....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 6666666666665532 134444455556666555555555555441 44444444455555555
Q ss_pred HHHHH
Q 007510 289 CSVYD 293 (601)
Q Consensus 289 ~~~~~ 293 (601)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.4 Score=35.37 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=18.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333434444444444444444433 2344444444444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.31 Score=44.52 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
..|-.+|...+..+... +.++-....++.|.+.|++.|..+|+.|++.+-+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 34556666666655433 45566667778888888888988898888776543221 11 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHK 262 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 262 (601)
.+..+.--|- .+-+-+++++++|.. +|+.||..+-..|+.++.+.+-. .+..++.-.|.+
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111121 123457889999986 58999999999999999988764 344455444544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.34 E-value=2.6 Score=35.09 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
.++..+.+.+........++.+...+ +.+...++.++..|++.. ..+..+.++. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34555555566666666666666555 345556666666666543 2233333331 1 12233444555555556
Q ss_pred CHHHHHHHHHHH
Q 007510 319 KVEAAFEILQEA 330 (601)
Q Consensus 319 ~~~~a~~~~~~~ 330 (601)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 665555555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=4.9 Score=40.24 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 250 VDRAREVYKMIHKY-NIKG-TPEVYTIAINCCSQ---------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 250 ~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
.+.|..+|.+.... .+.| ....|..+..++.. .....+|.++.++..+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45677777777621 1222 23344333333221 12233444444555544433 5555555554445555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
+++.|...|++....+ +....+|......+.-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555443 22233333333334445555555555555433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.5 Score=43.54 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=114.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHhc----cCCHHHH
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD-----RVVFNALITACGQ----SGAVDRA 216 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~A 216 (601)
.-+|.-+... +|| ....++....-.|+-+.+++.+.+..+.+ +.-. ...|+.++..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555543 133 35667777778899999999888776542 2211 1224444444433 4568899
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 217 FDVLAEMNAEVHPVDPDHITIGA-LMKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
.+++..+... -|+...|.. -.+.+...|++++|.+.|+...... . ......+--+.-.+.-..+|++|.+.|
T Consensus 253 ~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999999874 466555543 3466778899999999999755321 1 112344556667788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007510 293 DDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (601)
..+.+..-- +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999886432 34445444443 3456777 888889887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.85 E-value=7.2 Score=38.31 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
..+.+++.+..-.|+.++|.+..++|...
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34456666666677777777777776655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1 Score=43.72 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
+++.|.-+|.+.+++..|++.-....+.+ ++|+...--=..+|...|+++.|+..|+++++ +.|+......
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~ 329 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARA 329 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHH
Confidence 44555556666666666666666666554 44555544455566666666666666666665 4555444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.67 E-value=6.2 Score=40.70 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=11.4
Q ss_pred HHhcCCHHHHHHHHHH
Q 007510 35 LIRQGRISECIDLLED 50 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~ 50 (601)
|+-++++++|.++|+.
T Consensus 6 lflnn~~~eAe~~l~~ 21 (468)
T PF10300_consen 6 LFLNNRFKEAEELLSP 21 (468)
T ss_pred HHHCCCHHHHHHHHHh
Confidence 4557778888888773
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.53 E-value=3.3 Score=33.42 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (601)
-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+ |--.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHHH
Confidence 3466666666666655542 3334444443333322322223333222 211121 23444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 007510 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
-+-.+ ..+.......+..+...|+-+.--++..++.+. -.|++.....+..||.+.|+..++-+++.++-+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44332 234555667778888899998888888887653 467888888999999999999999999999888775
Q ss_pred C
Q 007510 441 I 441 (601)
Q Consensus 441 ~ 441 (601)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.4 Score=33.36 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (601)
....+......|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555556666666666666665432 55566666666666666666666666666665553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.1 Score=34.40 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
-.....+.|++++|.+.|+.+..+-. +-...+--.|+.+|.+.+++++|...+++.++.....-..-|-..+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445667788888888888776521 1234556667788888888888888888877763211123455555555443
Q ss_pred CC
Q 007510 176 GQ 177 (601)
Q Consensus 176 g~ 177 (601)
..
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 33
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=5.6 Score=39.82 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhCC---CCC---HHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007510 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCAS---------SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (601)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (601)
-..+.|+.+|.+.. +-| ...|..+...+.. ..+..+|.++.+...+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35667888887655 323 3333332222111 234556777777777776 6688888888887788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHH
Q 007510 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---VFNALITACGQSGAVDRA 216 (601)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A 216 (601)
.++++.|..+|++....+ +-...+|........-+|+.++|.+.+++..+. .|... .....++.|+..+ +++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 888999999999888764 223455666666667789999999998886654 33332 2333444565544 5666
Q ss_pred HHHHHH
Q 007510 217 FDVLAE 222 (601)
Q Consensus 217 ~~~~~~ 222 (601)
.+++-.
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.5 Score=40.31 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
|...+...|++++|..+|..+.+.-. +--+..+--|.....+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444444433210 11123344444444444444444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2 Score=41.76 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
.+++.+..+|.+.+++..|++.-.+.+..+.. |.-.+-.-..++...|+++.|+..|+++.+.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34566666677777777777777776665433 55555555566666777777777777776653 33333444444443
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 007510 350 SNAKNWQ-KALELYEHMK 366 (601)
Q Consensus 350 ~~~g~~~-~A~~~~~~m~ 366 (601)
-+..... ...++|..|-
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3333332 2355555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.1 Score=41.84 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNA 202 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 202 (601)
.++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667777888888888888888888765 55778888888888888888888888887764 477887777766
Q ss_pred HHHH
Q 007510 203 LITA 206 (601)
Q Consensus 203 li~~ 206 (601)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.22 E-value=3.6 Score=33.15 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQ 177 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 177 (601)
+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-..+.. +|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566677777777777766542 4466677777777777777777777777766542222222 22333345666777
Q ss_pred HHHHHHHHHHHHhCC
Q 007510 178 VAKAFGAYGIMRSKN 192 (601)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (601)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.5 Score=40.35 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (601)
|+.-+..| +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.....+.-...+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444432 34556666666655554410 0011223335555566666666666665555432111111234444555
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 007510 243 ACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (601)
...+.|+.++|..+|+.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.5 Score=39.94 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCH----HHHHHHHHHHHhcCC
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQ 249 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 249 (601)
..|+..+|-..++++.+. .+.|...+.-.=++|...|+.+.-...++.+..+ ..+|. ++-..+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666666666654 3556666666666777777766666666665532 12332 222233334445666
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
+++|++.-++..+.+ +.|.-+-.++...+-.+|++.++.+...+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666666555 44444455555555566666666655443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.2 Score=39.25 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=62.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCCHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVD 214 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~ 214 (601)
..|+..+|-..++++++. .+.|..+++..=.+|.-.|+.+.-...+++....- .||...|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666666543 24455666666666666666666666666665431 22222221 2223344566666
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (601)
Q Consensus 215 ~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (601)
+|.+.-++..+.. +.|.-.-.++...+-..|+..++.+...+
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7766666655421 23444444455555556666666665443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.95 E-value=8.9 Score=36.68 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 007510 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (601)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (601)
++.+.+++.|.+.|+.-+..+|-+....... . .....+..+|+.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455666777777776666555543332222 1 124567778888877642 2344445555433 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 355 --WQKALELYEHMKSIKLKPTV-STMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLV 417 (601)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (601)
.+.+...|+.+.+.|+..+- .-+.+-+-++..... ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35566677777776655432 233333333332221 3467778888888888877777665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.92 E-value=5.1 Score=38.28 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 007510 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (601)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (601)
+...+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555444432222221 1 1234555666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.75 E-value=20 Score=40.22 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (601)
.++.--+.|.+.+|+.++ .|+...+..+. ..+...+.+++|.-.|+..-+. .-.+.+|-
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334455555555443 34554444444 4444566777777666543221 23456788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 007510 351 NAKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (601)
.+|+|++|..+..++.. ..+... -..|+.-+...+++-+|-++..+.... |. . .+..+++...+++|
T Consensus 977 ~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-~----av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-E----AVALLCKAKEWEEA 1045 (1265)
T ss_pred HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-H----HHHHHhhHhHHHHH
Confidence 88888888888887763 233322 256788888899999998888876542 21 1 22334455556666
Q ss_pred HHHHHH
Q 007510 429 LMLLSQ 434 (601)
Q Consensus 429 ~~~~~~ 434 (601)
..+-..
T Consensus 1046 lrva~~ 1051 (1265)
T KOG1920|consen 1046 LRVASK 1051 (1265)
T ss_pred HHHHHh
Confidence 655543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.50 E-value=9.9 Score=36.13 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
++..++.+|...+..+ +|..+++.+... .+-+| .++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445556666555433 444555555432 12222 23333455555566666666666666654
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.58 Score=29.76 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
.+...|.+.|++++|.++|+++.+.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.28 E-value=3 Score=33.55 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=62.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCC
Q 007510 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDD 424 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~ 424 (601)
+.+..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|++-+++..+..-.-+ ...|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667788888888888776542 34667788888888888888888888877765311112 1234444455677888
Q ss_pred HHHHHHHHHHHHHCC
Q 007510 425 VEVGLMLLSQAKEDG 439 (601)
Q Consensus 425 ~~~a~~~~~~~~~~g 439 (601)
.+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=8.5 Score=34.65 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 312 (601)
.........+...+....+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555566666666666666555542 223344555556666666666777777776666544332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 007510 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (601)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 389 (601)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777644221 1223334444444666777888888777777643 22 35667777777777778
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.++|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888877763 343 334444444444666677777777777653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=4.6 Score=33.37 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 007510 240 LMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
++.+|.+.+++++|...+++..+
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.02 E-value=13 Score=37.56 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
..+..++.+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555556667777777777776543211 1233455567777777777777777766543
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.99 E-value=9.3 Score=34.63 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (601)
|.--..+|....++++|...+.+..+- .+.+...|.+ ...++.|.-+..++.. ++.-...++-...+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k----lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK----LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence 444445566667777776666655421 1222222221 1223445555555442 122233455566667
Q ss_pred HhcCChhHHHHHHHHHH
Q 007510 245 ANAGQVDRAREVYKMIH 261 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~ 261 (601)
..+|.++.|-..+++.-
T Consensus 102 ~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA 118 (308)
T ss_pred HHhCCcchHHHHHHHHH
Confidence 77777776666665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.96 E-value=18 Score=40.60 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 240 (601)
|.-.++.--++|.+.+|+.++. |+...+. +...-+...+.+++|.-.|+..-+ ..-.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHH
Confidence 3444444456666777766653 3333333 333334445666666666655321 1224
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (601)
+.+|..+|++.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+.... ....+..+++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 556666777777776666553211 000111245666666667776666666655443 12223344445556
Q ss_pred HHHHHHHHH
Q 007510 321 EAAFEILQE 329 (601)
Q Consensus 321 ~~a~~~~~~ 329 (601)
++|..+-..
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.64 Score=29.57 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
++..+...|...|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.73 E-value=10 Score=34.69 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007510 346 MGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (601)
.+-|.+.|.+..|..-++.|.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHh
Confidence 3344455555555555555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=12 Score=35.42 Aligned_cols=238 Identities=14% Similarity=0.062 Sum_probs=128.5
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCC
Q 007510 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEP 160 (601)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~ 160 (601)
+.+.++|.......+..+...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .+
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 334466776666677777766643 33333333433 34566666667777777763 3566666665333 56
Q ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHH
Q 007510 161 NVHTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (601)
Q Consensus 161 ~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 235 (601)
+..+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~ 174 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGD 174 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHH
Confidence 666666666666655421 223333333322 2345555566667777665 445555555543 23444
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 236 TIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (601)
Q Consensus 236 ~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (601)
+-...+.++.+.+ ....+...+..+.. .++..+....+.++.+.|+. .|...+-+..+.+ + .....+.++
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~AL 245 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAA 245 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHH
Confidence 4444555555542 13345555544443 34556666777777777764 4555555555442 2 133556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
...|.. +|...+..+.+.. +|..+-...+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 677764 5666666666542 3555554444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.61 E-value=11 Score=36.34 Aligned_cols=127 Identities=15% Similarity=0.092 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNI-----KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS- 308 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~- 308 (601)
++..++.-.+.++++.+.|+...+... .....++..|.+.|.+..++++|.-+..+..+ .++..-..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555666777777665544211 11234567777777777777776655544322 22221111222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 309 ----ALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (601)
Q Consensus 309 ----~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (601)
.+.-++...|++..|.+.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223355566666666666555433 33211 2334456677788888888887777654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.5 Score=39.57 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 310 (601)
++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55666777777777777777777777766 66677777777777777777777777776643 4666665555444
Q ss_pred HHH
Q 007510 311 IDF 313 (601)
Q Consensus 311 i~~ 313 (601)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.24 E-value=13 Score=33.10 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=104.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (601)
|-..-|+-=|....... |.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|.. --.|++..|.+=+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 34444444455444433 344678999988899999999999999998887655333333333332 2358888888777
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 328 QEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
...-+.+ +.|+ ..|--++ -..-++.+|..-+ ++.. ..|..-|..-|-.|.-..-.++ .+++++..-
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD- 225 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-
Confidence 7666654 2222 2222111 2233455665433 3333 3565667665555543222222 234444331
Q ss_pred CCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 405 LCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 405 ~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
-..+ ..||--+..-+...|+.++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1211 346777788889999999999999887753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.24 E-value=28 Score=37.03 Aligned_cols=302 Identities=13% Similarity=0.088 Sum_probs=158.9
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCC
Q 007510 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKN 192 (601)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 192 (601)
..|++.+..-|. .+|+-+...+.+..|.++-..+...-.. +...|.....-+.+..+. +++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456666666554 4566677778888888887776522111 145666666666665322 23333333222222
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 264 (601)
. .+.++|..+.+--...|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-.+...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999999888764222111110 111224445566677777777777665554421
Q ss_pred -----CCCCHHHHHHHHHH--------HHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 007510 265 -----IKGTPEVYTIAINC--------CSQTGDWEFACSVYD--DMT----KKGVIPDEVFLSALIDFAGHAGKVEAA-- 323 (601)
Q Consensus 265 -----~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~--~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a-- 323 (601)
.+.....|.-++.- +.+.++-.++...|. ... ..+..|+ ......++.+.....-.
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 11112222222220 111111112221111 100 0122222 22333344433321111
Q ss_pred --------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007510 324 --------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 324 --------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (601)
..+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 111111211 2222333445555566777788888888777666 578778877788888888887766
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
++-+.++ .+.-|.-...+|.+.|+.++|.+++.+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6544432 24557777788888888888888775543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.15 E-value=6.5 Score=34.34 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555555555555555554322221 2234445555555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.07 E-value=23 Score=35.84 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
..+...+-+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34444555667777777777777654311 23335556677777777777777777665543
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.83 E-value=27 Score=37.72 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA----CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 240 (601)
...-+..+.+...++-|+.+-.. .+. |..+...+... +.+.|++++|..-+-+... -++|. .+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~s-----~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEPS-----EV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCChH-----HH
Confidence 34455666666677777665432 222 33333334333 3456777777777666543 23332 24
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (601)
+.-|....+...-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 4445555556666666777777764 334555677777777777777666655443 2221 11234455556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
++|..+-..... +......+ +-..+++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 666555443322 23333333 345667777777776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=89.80 E-value=23 Score=35.35 Aligned_cols=398 Identities=11% Similarity=0.084 Sum_probs=227.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC----C---C-----------CCHHHHHHHHH
Q 007510 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P---N-----------PTLSTFNMLMS 100 (601)
Q Consensus 39 g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~---~-----------~~~~~~~~li~ 100 (601)
.+++.....+....+.. +....++...+-.+-+.+.+++|++.|..- . + +|...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 44555555555555543 334444333333455678888888877421 1 1 12222345667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc--------CChhHHHHHH-------HHHHHC-----
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKS--------GKVDAMFEVF-------HEMVNA----- 156 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~--------g~~~~a~~~~-------~~m~~~----- 156 (601)
.+...|++.+++.+++++...=. .-+..+|+.++-++++. ...+-.-..| .+|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 78899999999999998876433 36888999877776654 1222222222 222211
Q ss_pred -CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhhhCCCCC--
Q 007510 157 -GIEPNVHTYGALIDGCAK--AGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPV-- 230 (601)
Q Consensus 157 -g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-- 230 (601)
.+.|-......++....- ..+..--.++++.....-+.|+-.. ...++..+.. +.+++..+-+.+... .+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--~i~~ 292 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--KIEK 292 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--hHHH
Confidence 234444444555544332 2233344455554444445565433 3344444444 445554444433221 01
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHHCC
Q 007510 231 --DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCS----QTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 231 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~ 299 (601)
+.-..++..++....+.++...|.+.+..+.-.+...+. .+-..+-+..+ ...+..+=+.++......+
T Consensus 293 Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 293 LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 112457888999999999999999988877664321110 01122333333 1223344455666666554
Q ss_pred CCCCHHHHHHHHHH---HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhC
Q 007510 300 VIPDEVFLSALIDF---AGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSI 368 (601)
Q Consensus 300 ~~p~~~~~~~li~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~ 368 (601)
+. .......++.+ +-+.|. -++|..+++.+.+-. +-|...-|.+. ..|.+ ...+..-.++-+-+.+.
T Consensus 373 iD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 373 ID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred cc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 42 22222333332 333444 788999999887753 33444444333 33332 34456666666677788
Q ss_pred CCCCCHH----HHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 007510 369 KLKPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (601)
Q Consensus 369 ~~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p 442 (601)
|+.|-.+ .-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++..+ .|
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~ 523 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PP 523 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CC
Confidence 8777433 34445443 4568999999877777766 8899999999988888999999999999764 45
Q ss_pred CHHHHHHHH
Q 007510 443 NLVMFKCII 451 (601)
Q Consensus 443 ~~~~~~~li 451 (601)
+..++++=+
T Consensus 524 n~~~~dskv 532 (549)
T PF07079_consen 524 NERMRDSKV 532 (549)
T ss_pred chhhHHHHH
Confidence 666665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.78 E-value=12 Score=32.09 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
+.++.+...+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555667777777777777777777776665555432 23344333332221111 222333333333332
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
+ + ..+..+++.+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 24566677777788888888777664322 122234556666666666655555555544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.77 E-value=4 Score=30.86 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 007510 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (601)
+.-++.+-++.+....+.|++....+.++||.+.+|+..|.++|+-++ +.|. +...|..+++-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 344666777777777899999999999999999999999999999877 4343 455788877653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.75 E-value=23 Score=35.27 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHH-HHH
Q 007510 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGA 239 (601)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~ 239 (601)
..+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++.-++ .|+...|..+|+--... -||... -.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~----f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK----FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh----CCCchHHHHH
Confidence 4566777777777777777888888877776 5667777777776554 46667777777654432 233332 234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
.+.-+.+.++-+.|..+|+....+- ..+ ...|..+|..-..-|+...+..+=+.|.+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4555667777777888887443321 111 256777777777777777777666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.54 E-value=12 Score=31.71 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=27.5
Q ss_pred hccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
...++.+++..++..+..- .+-.+...++...+ +.+.|++.+|.++|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvL-RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL-RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh-CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666665532 11122223333332 45666677777777666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.46 E-value=4.4 Score=35.38 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHC---CCCCC----HHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEVGLMLLSQAKED---GVIPN----LVM 446 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---g~~p~----~~~ 446 (601)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..+++.+.-.+++..+.....++... |-+.+ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666655434433 23455666666666666666666655432 11111 235
Q ss_pred HHHHHHHHHhhHHHHHHh
Q 007510 447 FKCIIGMCSRRYEKARTL 464 (601)
Q Consensus 447 ~~~li~~~~~~~~~a~~~ 464 (601)
|..|..+..|.|.+|.+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~ 135 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAEL 135 (177)
T ss_pred HHHHHHHHhchHHHHHHH
Confidence 666666666667766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.36 E-value=5.1 Score=30.70 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 007510 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (601)
+..+-++.+....+.|++....+.++||.+.+++..|.++|+-++. .|.. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 5566677777778999999999999999999999999999998874 3433 23888887654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.12 E-value=5.6 Score=40.81 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (601)
.|.+++-.|+++.|-.++..+.+. .+..++.+.-++|-.++|+++- ++||- -.....+.|+++.
T Consensus 592 eyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 592 EYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCcHHH
Confidence 344555566666665544444321 2223334444555555555431 11211 1122345566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (601)
|.++..+.. +..-|..|.++..+.+++..|.+-|..... |..|+-.+...|+.+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 666554432 344566666666666666666666655442 44555555566665544444444444
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007510 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (601)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (601)
.|. .|.-.-+|...|+++++.+++..
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 431 22223345555666666666544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.02 E-value=13 Score=31.47 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
-.+.++.+.+..++..+.-. .|.... -..-...+.+.|++.+|..+|+++... .|....-.+|+..|..
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 34455666666666666543 232211 111223345666666666666666554 2333333444444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.68 E-value=17 Score=32.51 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (601)
..+......+...+.+..+...+...... .........+......+...+....+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33444444445555555555544443320 0112223333444444444555555555555554433221 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 278 -~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666666666666666544211 012223333333355667777777777776665421135666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
++.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888777777542 33 33444444444466667888877777766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.3 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
|+.|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.81 Score=27.16 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
+..+.+ |.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334433 445666666666666666666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.93 E-value=25 Score=32.33 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALID 170 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~ 170 (601)
.|+.- ..-.+.|++++|...|+.+..+.. +-...+.-.++-++-+.+++++|+...++..+.- -.||. .|-.-|.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 34443 445678999999999999986531 1234566667778888999999999999877652 23332 3444444
Q ss_pred HHHh-------cCCHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 007510 171 GCAK-------AGQVAKAFGA---YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (601)
Q Consensus 171 ~~~~-------~g~~~~A~~~---~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 240 (601)
+++. ..+...+.+. |++++.+ -||. .=...|..-+..+... + ...=..+
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~---L---A~~Em~I 173 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA---L---AGHEMAI 173 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH---H---HHHHHHH
Confidence 4442 2233333333 3333333 2221 1111111111111100 0 0011235
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
.+-|.+.|.+..|..-++.|.+. .+.+ ...+-.+..+|...|..++|.+.-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 56677777777777777777765 2322 234556667777778777777765555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.92 E-value=1.4 Score=25.91 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=10.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
|..+...|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.90 E-value=19 Score=30.91 Aligned_cols=134 Identities=14% Similarity=0.231 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
+.++.+.+.+++|+...+..+++.+.+.|++.....+ ...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3445555667777777777777777777765544433 33333344333332222221 2223333333333322
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
=...+..++..+...|++-+|.++....... +......++.+..+.++...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV------DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0023455666677777777777776654211 111123345555555555555555544444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.65 E-value=24 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=16.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTM 377 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (601)
+..+++.+|+++|+++....+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 4556666777777776655444444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.54 E-value=1.7 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+|..|...|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777888888888888887744
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.34 E-value=52 Score=35.37 Aligned_cols=150 Identities=9% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (601)
.++-|++.+.+++|+.+-+.....- +. ...+...++.-+...|++++|-...-.|...+...|.--+..+...++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3445889999999998877655332 21 2222233333345567888888888888878888888877777777665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------------CC-------CCCHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------------GI-------EPNVHTYGALI 169 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~-------~~~~~~~~~li 169 (601)
..... -+.......+...|..++..+.. .+. ..+++....- .. .-+...-..|+
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 43322 22222112345566666665554 111 1111111110 00 11222334477
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (601)
..|...++++.|++++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77788888888888877665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.22 E-value=31 Score=32.75 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.9
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCCH----
Q 007510 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~---- 162 (601)
.+.|+++.|..++.+....- ..|+. ..|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777877777766432 12321 23444444443333788877776664432 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 007510 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (601)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 238 (601)
.+...++.+|...+..+ +|.++++.+.... +-....+..-+..+.+.++.+++.+.+.+|... +.-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~---~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS---VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh---cccccchHH
Confidence 45677788888877655 4556666665442 222445545567777789999999999999875 221223444
Q ss_pred HHHHHH---HhcCChhHHHHHHHHHHhcCCCCC
Q 007510 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (601)
Q Consensus 239 ~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 268 (601)
..+..+ .... ...+...++.+....+.|.
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 444443 3332 3445555555544433443
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.53 E-value=22 Score=30.44 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--H
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNAL--I 381 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l--i 381 (601)
.|...+. +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-+. -..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 345566777777777777766432221 11222334566777778888887776543333322 11111 2
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
..+..+|.+++.....+.+-..+-+-....-..|.-+-.+.|++..|.+.|..+...-..|...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 2455778888777776666544322233344566667778888888888888887654445443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.3 Score=24.91 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (601)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (601)
.+|..+...+...|++++|...|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688889999999999999999999987 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.07 E-value=16 Score=32.06 Aligned_cols=128 Identities=11% Similarity=0.080 Sum_probs=83.7
Q ss_pred hhHHHHHHHH---hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCCHHHHHH----
Q 007510 27 EQLHSYNRLI---RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM---- 97 (601)
Q Consensus 27 ~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~---- 97 (601)
.....|..++ ..+.. +.....+.+...+. ..........+.......+++++|..-++... .+.-..+..
T Consensus 52 ~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 52 EASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 3444555555 34555 66677777776652 12334444556677788889999998888654 333333333
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 98 -li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
|.+...+.|.+++|+.+++.....+. .......-.+++...|+-++|+.-|+.....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44567788999999998887765432 22334445678889999999999999888764
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=85.06 E-value=15 Score=28.09 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 117 (601)
..+.++|-.+-+.+...+. ....+..+-+....+.|++++|..+....+.||...|.++-. .+.|-.+.+..-+.+
T Consensus 18 ~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred chHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 3467788888888877652 233332222333456688999998888888888888887754 345656666666666
Q ss_pred HHHcCCCCCHHHH
Q 007510 118 VQEAGLKADCKLY 130 (601)
Q Consensus 118 m~~~g~~~~~~~~ 130 (601)
|-..| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 4444333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.02 E-value=1.3 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 007510 161 NVHTYGALIDGCAKAGQVAKA 181 (601)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A 181 (601)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.73 E-value=40 Score=32.66 Aligned_cols=165 Identities=14% Similarity=0.035 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIIS 341 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 341 (601)
.|..+..++-+.-++.+++.+-+.-.. .|..| ......++..+..-.+.++++++.|+...+.- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 445555555555555555555544332 22222 11233345556666677888888887765421 1223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHH-----HHHHHHHHcCCChhHHHHHHHHHH----hCCCCC
Q 007510 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTV-STM-----NALITALCDGDQLPKTMEVLSDMK----SLGLCP 407 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~-~~~-----~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p 407 (601)
+..|...|.+..++++|.-+.....+ .++ .|. .-| -.|.-++...|+..+|.+.-++.. ..|-+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77888888888888888766655443 221 121 112 234556777888888887777643 344222
Q ss_pred C-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 408 N-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 408 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
. ......+.+.|...|+.+.|+.-++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2234566777888999998888777654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.42 E-value=64 Score=34.79 Aligned_cols=180 Identities=15% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCCc--hHHHHHHHHHHHh-hhHHHHHHHHHHhhCC----CCCHH-----HHHHHHHHHHhcCChHH
Q 007510 43 ECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TFNMLMSVCASSKDSEG 110 (601)
Q Consensus 43 ~A~~~~~~m~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~~~li~~~~~~g~~~~ 110 (601)
.|++.++.+.+....++ ...++..++.++. ...+++.|...+.+.. +++.. .-..+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45666776664332232 3344555555544 4456888888877542 22211 2234556666666555
Q ss_pred HHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 007510 111 AFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCA--KAGQVAK 180 (601)
Q Consensus 111 A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 180 (601)
|...++...+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888887766532 12223344444 333333478888988888876532 2444555555555544 3455666
Q ss_pred HHHHHHHHHhCC---------CCCCHHHHHHHHHHH--hccCCHHHHHHHHHHh
Q 007510 181 AFGAYGIMRSKN---------VKPDRVVFNALITAC--GQSGAVDRAFDVLAEM 223 (601)
Q Consensus 181 A~~~~~~m~~~g---------~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 223 (601)
+.+..+++.... ..|-..+|..+++.+ ...|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777766663221 134456677676654 4557766666555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.38 E-value=60 Score=34.45 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT-----CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 175 (601)
...|.+.++...+.| +......+..+ ++...+.+.|...|+...+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777665 22222222222 3355678888888888765 33 333455666666653
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH--hc
Q 007510 176 G-----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NA 247 (601)
Q Consensus 176 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~ 247 (601)
. +.+.|+.+|.+.-..| .|+....-..+..... ..+...|.++|......+ . ++..-+..++.... -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~-~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--H-ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--C-hHHHHHHHHHHHhCCCcC
Confidence 2 5566777777777766 3444443333322222 245667777777766542 1 22222211111111 22
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 300 (601)
.+...|..++.+..+.| .+...--...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35677777777777766 3222222222233333 666666666666655554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.15 E-value=23 Score=29.52 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=32.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
...++++++..+++.|.-. .|+ ..++... .+...|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3467778888888777654 332 2333333 356778888888888888765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.94 E-value=17 Score=34.33 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (601)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (601)
...+...++..-....+++.+...+-++.... ..++.. -.+.++.+.+ -+.++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444444455566655555554321 111111 1122222222 244566666666566666666666666
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 007510 380 LITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
+|+.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.40 E-value=2.5 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=8.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHH
Q 007510 380 LITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~ 401 (601)
+...|.+.|++++|++.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=43 Score=31.84 Aligned_cols=233 Identities=12% Similarity=0.004 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH----HHHHHHHHHhhhCCCCCCCCHH
Q 007510 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV----DRAFDVLAEMNAEVHPVDPDHI 235 (601)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 235 (601)
+|.......+.++...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+..+ .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCCHH
Confidence 4554555555555555542 23333333322 22344444445555555542 3455555544221 34444
Q ss_pred HHHHHHHHHHhcCCh-----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 236 TIGALMKACANAGQV-----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (601)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ .++...+-.+... +|...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 444444444443321 112222222211 2244555555666665555 3455555555442 233333444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 311 IDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 311 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
+.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-...+. ++ .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCC
Confidence 44444432 13344444444443 23555566666666666663 444444444432 22 12345566666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 390 LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 419 (601)
. +|+..+.++.+. .||..+-...+.+|
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4 566666666542 34555544444444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.93 E-value=37 Score=30.96 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQ 119 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~ 119 (601)
.|.-...+|-...++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444444555555555555444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.65 E-value=43 Score=31.49 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cCC-hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAK-SGK-VDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 107 ~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g~-~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
...+|+.+|+.... ..+--|..+...|++.... .+. ...--++.+-+.. .|-.++..+...++..++..+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666653221 2234455555556655544 221 1112233333332 223566666777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007510 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (601)
Q Consensus 183 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (601)
++++.-... +..-|...|..+|+.....|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766544 4455677777777777777777766666554
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=82.56 E-value=73 Score=34.01 Aligned_cols=147 Identities=9% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
....+.++.+-+..+......++..|.+.|-.+.+..+.+.+-.+-. ...-|...+.-+.++|+......+-..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444444433334666677788888888888888888776644321 1234555555666666665555554444422
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
....+......++....... + +. +.-++-....-+ .+.|++.+|.+.+-.+.+.++.|...
T Consensus 468 ~~~~~~~~~~~ll~~i~~~~-----------~----~~-~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 468 YCNNGEPLDDDLLDNIGSPM-----------L----LS-QRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCcccHHHHHHhcchh-----------h----hh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 21122112222222111111 0 11 111111111111 33477777777777777777777765
Q ss_pred HHHHHHHH
Q 007510 446 MFKCIIGM 453 (601)
Q Consensus 446 ~~~~li~~ 453 (601)
-..-|.++
T Consensus 532 ~~~LL~d~ 539 (566)
T PF07575_consen 532 WPLLLCDA 539 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.50 E-value=21 Score=33.74 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007510 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (601)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (601)
|.+....+...++..-....+++.+...+-.++....- ..|+. +-.+.++.+. .-++++++.++..-...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33444444444444444455566666666555432100 01111 1111222222 235556666666666667777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777666665544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.15 E-value=16 Score=32.23 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=39.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHhcCChh
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~ 251 (601)
.+.|+ +.|++.|-++...+.--++.....|..-|. ..+.+++.+++.+......+- .+|...+.+|.+.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666666655553333333333333333 455566666655554432222 445555666666666666555
Q ss_pred HH
Q 007510 252 RA 253 (601)
Q Consensus 252 ~a 253 (601)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 54
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.95 E-value=15 Score=31.66 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 392 KTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g----~-------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
+|+.-|++.+. +.|+. .++..+..++...+ + +++|...|++... .+|+..+|+.-+.+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444444 55653 45555555554322 2 3344444444444 568888887777764
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.38 E-value=15 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.31 E-value=85 Score=33.35 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcc
Q 007510 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDG-----CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (601)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (601)
...+.++++...+.| +...-..+..+ +....+.+.|+..|+.+.. .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888765 33333333332 4456789999999998876 44 233555666666664
Q ss_pred C-----CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 007510 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (601)
Q Consensus 211 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (601)
. +.+.|+.++......+ .|+.......+..... ..+...|.++|...-+.|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 5677888888776542 4554444333322222 24567899999888888742 33333333222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
-..+...|..++++.-+.|. |-..--...+..+.. ++.+.+...+..+...+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 23467888888888888873 332222233334444 777777777777766653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.28 E-value=4.5 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..|..+...+...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999887
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 2e-16
Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 2/209 (0%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
P L+ + G + + A C + + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 220 LAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
L A+M A G V M+ + Y A+ C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 279 CSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
+ + M+++G+ +F + L+ A ++A ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366
++ S L+ +L+ +K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 6e-16
Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 4/240 (1%)
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 329 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 386 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
V ++ + + H+ + LA V ++ T+P+ EV
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 4e-15
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 6/189 (3%)
Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGA 184
+ L+ +D + A + A C Q+ A
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
+ R K ++NA++ + GA VL + + PD ++ A ++
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCM 210
Query: 245 ANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
Q + + + +K + ++ + + V + +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 304 EVFLSALID 312
V S L+
Sbjct: 271 PVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 5e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 72 KSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKAD 126
K +++A + C + A +L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY- 185
+Y ++ A+ G + V + +AG+ P++ +Y A + + Q A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
M + +K + L++ ++ + V + P +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 2e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 286
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 345
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 406 CPNT 409
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 3/201 (1%)
Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
A + + S + L+ + +L + A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 382 TALCDGDQLPKTMEVL---SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
DQLP +L + Y+ +++ R+ + + +L K+
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
G+ P+L+ + + R+ + A T+ + + +++ +T++ L A V
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 499 IPTVEVVSKVLGCLQLPYNAD 519
+ V+ + L P N
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 7e-13
Identities = 93/664 (14%), Positives = 184/664 (27%), Gaps = 197/664 (29%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYT 131
K+I KE + + T + ++ + ++ V + V+E L+ + K L +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRINYKFLMS 96
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--------------------------EPNVHTY 165
+ T + + M+ + + NV
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 166 GALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
G L G K A V ++ + + ++ + + + VL
Sbjct: 157 GVL--GSGKTWVALDVCLSY------KVQCKMDFKIFW---LNL----KNCNSPETVLEM 201
Query: 223 MNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+ ++ +DP+ + ++ Q R + K Y + +N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS-KPY-----ENCLLVLLNVQ 254
Query: 280 SQTGDWE---FAC---------SVYD------------DMTKKGVIPDEVFLSALIDFAG 315
+ W +C V D D + PDEV S L+ +
Sbjct: 255 NAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLD 312
Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKLKPT 373
++ +E + + S++ + W ++H+ KL
Sbjct: 313 C-----RPQDLPREVL--TTNPRRL---SIIAESIRDGLATWDN----WKHVNCDKLTTI 358
Query: 374 V-STMNAL--------------------ITA--LC---DGDQLPKTMEVLSDMKSLGLC- 406
+ S++N L I L M V++ + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 407 --PNTITYSI----LLVACERKDDVEVGLMLLSQ-------AKEDGVIPNLVM-FKCIIG 452
P T SI L + + +++ + ++ +D + P L F IG
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 453 ---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
E+ L F +E K + + T++ +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF----LEQK---IRHDSTAWNASGSILNTLQQLKF-- 529
Query: 510 GCLQLPY------NADIRERLVENLG----VSADALKRSNLCSLIDGFGEYDPRAFSLLE 559
Y N ERLV + + L S L+ + E
Sbjct: 530 ------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEA-IFE 581
Query: 560 EAAS 563
EA
Sbjct: 582 EAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 2e-10
Identities = 82/541 (15%), Positives = 149/541 (27%), Gaps = 182/541 (33%)
Query: 16 GKH---ANYAHDVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHAR---F 67
GK + Q ++ + + +LE +++ L +D + +R
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 68 FNVCKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKA 125
N+ +I+ R K P N L+ VL VQ A A
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE-----NCLL--------------VLLNVQNAKAWNA 261
Query: 126 ---DCKLYTTLITTCAKS----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
CK L+TT K + + + + P+ +
Sbjct: 262 FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-----------EVKSLL 307
Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-I 237
K + +P L EV +P ++ I
Sbjct: 308 LKYL---------DCRPQD----------------------LPR---EVLTTNPRRLSII 333
Query: 238 GALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSV 291
++ A + +K N + ++N E+ SV
Sbjct: 334 AESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSV 380
Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
+ IP + LS + ++ + SL
Sbjct: 381 FPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK----------YSL------ 416
Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
+ K + ++LK + AL ++ D +PK + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-----------TFDSDDLI 465
Query: 412 --------YSIL---LVACERKDDVEVGLMLLS-----QAK---------EDGVIPNLVM 446
YS + L E + + + M+ + K G I N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 447 ----FKCIIGMCSRRYEKARTLNEHVLSF--NSGRPQIENKWTSL---ALM-----VYRE 492
+K I +YE R +N +L F I +K+T L ALM ++ E
Sbjct: 526 QLKFYKPYICDNDPKYE--RLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 493 A 493
A
Sbjct: 583 A 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 6/158 (3%)
Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
+ K Y + + +V+ + ++ + + + E
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVY 393
Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
ALM+ + A +++++ K PE I+ S + +++ +
Sbjct: 394 VTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451
Query: 296 TKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEA 330
G +P E + + F + G + + ++ +
Sbjct: 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 308 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 364
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 365 -MKSIKLKPTVS 375
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 601 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.53 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.46 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.3 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.25 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.16 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.12 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.09 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.09 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.93 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.91 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.83 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.76 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.74 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.7 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.7 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.61 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.51 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.45 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.33 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.26 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.2 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.77 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.64 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.11 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.89 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.66 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.46 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.34 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.39 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.73 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.08 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.38 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.26 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.28 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.1 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.04 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.87 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.73 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.0 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.83 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.28 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.26 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=319.30 Aligned_cols=424 Identities=9% Similarity=-0.044 Sum_probs=359.7
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC--CCCCHHHHHHHHH
Q 007510 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (601)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (601)
++...|+.++ +.|++++|+.+|++|.... |.+ .....++..+...|++++|+.+|+++ .+++..+|+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4556666655 7899999999999999765 433 44456888888999999999999988 4788999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007510 101 VCASSKDSEGAFQVLRLVQEA---------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (601)
.|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999853211 223458899999999999999999999999998864 2234443
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 166 GAL--------------------------------------IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (601)
Q Consensus 166 ~~l--------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (601)
..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 333 55666889999999999999865 58999999999999
Q ss_pred hccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (601)
.+.|++++|.++|+++.... +.+..++..++.+|.+.|++++|..+|+.+.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3456788999999999999999999999998765 6778999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|.++|+++.+.... +..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886543 68899999999999999999999999999875 56788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 007510 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (601)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (601)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999875 66787 7899999999999999999999999998854 2
Q ss_pred CCHHHHHHHHHHHHh--hHHHHHHh
Q 007510 442 PNLVMFKCIIGMCSR--RYEKARTL 464 (601)
Q Consensus 442 p~~~~~~~li~~~~~--~~~~a~~~ 464 (601)
.+..+|..+..+|.+ ++++|.+.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHH
Confidence 367888888888765 44444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=303.62 Aligned_cols=404 Identities=10% Similarity=0.015 Sum_probs=350.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-------------------CH
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TL 92 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 92 (601)
...+.+.|++++|+.+|+++... +.+......++..+.+.|++++|+++|+++.+. +.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455899999999999988654 455667777888899999999999999965433 48
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------H
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--------------------------------------I 134 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------i 134 (601)
.+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 3344443333 5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 007510 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (601)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (601)
..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+++|+++...+ +.+..+++.++.++.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 5666789999999999999865 5899999999999999999999999999998765 457788999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 215 ~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
+|.++++++... .+.+..++..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999863 35578899999999999999999999999998875 56788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 007510 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 370 (601)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 370 (601)
+.+.+.. +..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 9987643 78899999999999999999999999998875 557899999999999999999999999999865 55
Q ss_pred CCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 007510 371 KPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMF 447 (601)
Q Consensus 371 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~ 447 (601)
.|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+ ...+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 777 7899999999999999999999999998854 447899999999999999999999999999984 454 3344
Q ss_pred HHHH
Q 007510 448 KCII 451 (601)
Q Consensus 448 ~~li 451 (601)
..+.
T Consensus 588 ~~l~ 591 (597)
T 2xpi_A 588 DLLK 591 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=266.38 Aligned_cols=204 Identities=16% Similarity=0.246 Sum_probs=137.8
Q ss_pred HHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 007510 253 AREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 322 (601)
Q Consensus 253 a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 322 (601)
+..+.+.+.+.+....+. +++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445555555444433 4666677777777777777777777777777777777777777765443 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.+++.+.+
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-27 Score=236.88 Aligned_cols=377 Identities=12% Similarity=0.050 Sum_probs=290.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~ 109 (601)
..+.+.|++++|++.++++.+.. |.+......+..++...|++++|..+++.. .+.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45668899999999999888876 667777777777777788888888888654 3557778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
+|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888764 4456678888888888888888888888888764 3345667777888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 007510 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (601)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (601)
... +.+..+|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...|++..+.. +.+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 653 3456778888888888888888888888887641 3345677778888888888888888888887765 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
.++..+...|.+.|++++|.+.|+++.+.+.. +..++..+...+.+.|++++|...++++.+.. +.+..+++.+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 78888888888888888888888888876543 56677888888888888888888888887764 56677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKD 423 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 423 (601)
.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|...|+++.+ +.|+ ...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 88888888888888887653 34567788888888888888888888888876 3454 455666655555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=260.87 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEVF 306 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~p~~~~ 306 (601)
.++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4555666666666666666666666666666666666666666665443 6778888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (601)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007510 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (601)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (601)
.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-26 Score=229.11 Aligned_cols=362 Identities=13% Similarity=0.082 Sum_probs=316.5
Q ss_pred HHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 69 NVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (601)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (601)
..+.+.|++++|.+.|..+ .+.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3455678999999998765 35566778888889999999999999999988865 6688999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998864 4456789999999999999999999999998763 33455677788899999999999999999886
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (601)
. .+.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..
T Consensus 164 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 4 23457789999999999999999999999999886 667889999999999999999999999999887543 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
++..+...+...|++++|...++++.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4567889999999999999999999999998764 567899999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (601)
+.|++++|...++++.+. .+.+..++..+...+.+.|++++|...++++.+ ..|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 999999999999999874 244578899999999999999999999999987 4454
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-22 Score=202.93 Aligned_cols=333 Identities=11% Similarity=0.018 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
.++..|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 456677888888888888888888888887764 5567788888888888888888888888887765 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHhccCCHHHHHHHHHHhhhCCCCCCCCH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 234 (601)
..|.+.|++++|...|+++.... +.+. ..+..+ ...+...|++++|...|+++... .+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCh
Confidence 88888888888888888887653 2233 455444 33477888888888888888763 23466
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL---- 310 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---- 310 (601)
.++..+..+|.+.|++++|...|+.+.+.+ +.+..+|..+...|...|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 778888888888888888888888887765 566788888888888888888888888888765433 34444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 311 --------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (601)
Q Consensus 311 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (601)
...+.+.|++++|...|+++.+.. +.+ ..++..+..++.+.|++++|...++++.+.. +.+...|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 678888899999999888887754 222 3467888888888999999999888887643 34678888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH------------HHHhhcC-----CHHHHHHHHHH
Q 007510 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll------------~a~~~~g-----~~~~a~~~~~~ 434 (601)
.+..+|...|++++|...|+++.+ +.|+ ...+..+. ..|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 888888889999999999988887 4555 44455554 2344445 66777888876
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-21 Score=200.07 Aligned_cols=325 Identities=13% Similarity=0.050 Sum_probs=249.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
...+....... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444332 4567788888899999999999999999988764 557888889999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCH----HHHHHH------------HHHHHhcCChhHHHH
Q 007510 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRARE 255 (601)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~g~~~~a~~ 255 (601)
+ +.+...+..+...|.+.|++++|.+.|+++... .|+. ..+..+ ...+.+.|++++|..
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4 446778888889999999999999999988753 4443 444444 344888899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
.|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +..++..+...|...|++++|...++++.+..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999888775 667888889999999999999999999988876433 67888888899999999999999999888764
Q ss_pred CCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHH
Q 007510 336 SVGIISYSSL------------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLS 398 (601)
Q Consensus 336 ~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 398 (601)
+.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344555444 78888999999999999988874 344 4477888889999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007510 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCII 451 (601)
Q Consensus 399 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li 451 (601)
++.+.. +.+..+|..+..+|...|++++|...++++.+ +.|+. ..+..+-
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 887642 33578888899999999999999999998887 44543 3343333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-22 Score=206.07 Aligned_cols=401 Identities=10% Similarity=0.010 Sum_probs=306.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCC
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 107 (601)
.-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+...|..+..++.+.|+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 3456668999999999999999987 4 56667777888888899999999998653 5677889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--------------------------------
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-------------------------------- 155 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------------------- 155 (601)
+++|...|+.+.+.+ +++......++..+........+.+.+..+..
T Consensus 89 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 999999999998876 44444444444444433222222222211100
Q ss_pred ---CCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHH
Q 007510 156 ---AGI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALITAC 207 (601)
Q Consensus 156 ---~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~~~ 207 (601)
... +.+...+..+...+.. .|++++|...|+++.. ..- +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 000 1114444444444444 8999999999999887 311 12345677788889
Q ss_pred hccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (601)
...|++++|...++++... .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 248 ~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999998764 3347788888899999999999999999998875 5567889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|...|++..+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999887654 56788888889999999999999999988764 44677888899999999999999999998875
Q ss_pred CCC-CCC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 007510 368 IKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 368 ~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (601)
... .++ ..+|..+...+.. .|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL- 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 321 111 3488889999999 999999999999988742 335777888999999999999999999999884
Q ss_pred CCCCHH
Q 007510 440 VIPNLV 445 (601)
Q Consensus 440 ~~p~~~ 445 (601)
.|+..
T Consensus 479 -~~~~~ 483 (514)
T 2gw1_A 479 -ARTME 483 (514)
T ss_dssp -CSSHH
T ss_pred -ccccH
Confidence 45543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-21 Score=201.77 Aligned_cols=376 Identities=6% Similarity=-0.042 Sum_probs=290.6
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHH
Q 007510 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV 101 (601)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 101 (601)
..........+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|+..|+++. +++......++..
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3333344455668999999999999999987 7777788888889999999999999998753 3344444444444
Q ss_pred HHhcCChHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTC 137 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~-----------------------------------g~---------~~~~~~~~~li~~~ 137 (601)
+........+.+.+..+... .. +.+...+..+...+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 43332222222222111100 00 11144444444445
Q ss_pred Hh---cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 138 AK---SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (601)
Q Consensus 138 ~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (601)
.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.... |+...+.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 44 8999999999999987 311 2245678889999999999999999999998874 4478888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (601)
.+...+...|++++|...++.+... .+.+...+..+...|...|++++|...|+.+.+.. +.+..++..+...+..
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999998864 23456788899999999999999999999999876 5567899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cC
Q 007510 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AK 353 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 353 (601)
.|++++|...++++.+.... +...+..+...+...|++++|...++++.+.... ++ ...+..+...|.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999876543 5678889999999999999999999998765311 11 3488899999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (601)
++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+ +.|+....
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 485 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHH
Confidence 9999999999998754 45678899999999999999999999999988 45765443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-20 Score=197.58 Aligned_cols=390 Identities=12% Similarity=0.054 Sum_probs=288.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (601)
+.+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+...|..+...+...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 44558999999999999999987 6778888888888889999999999998753 567889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHH--------------------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVH-------------------- 163 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~-------------------- 163 (601)
+|...|+.+ .. .|+.. ...+..+...+....|...++.+... ...|+..
T Consensus 111 ~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 999999633 22 23221 22234445555567788888777542 1112221
Q ss_pred ----------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHH
Q 007510 164 ----------TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFD 218 (601)
Q Consensus 164 ----------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 218 (601)
....+...+.. .|++++|..+|+++.+.. +.+. .++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 12222222211 247888899998888763 2222 245666677788899999999
Q ss_pred HHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
.+++.... .|+...+..+...+...|++++|...|+.+.+.. +.+..+|..+...+...|++++|...|++..+.
T Consensus 265 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 265 LLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99988764 4567778888888889999999999999888876 567888999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC
Q 007510 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPT 373 (601)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~ 373 (601)
... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. ....
T Consensus 340 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 543 55778888888999999999999999888775 5567788888899999999999999998876532 1112
Q ss_pred HHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 374 VSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 374 ~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
...+..+...+.+. |++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23344455667776 89999999999988742 335677888889999999999999999998874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-18 Score=170.26 Aligned_cols=313 Identities=10% Similarity=0.044 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (601)
|+..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35567777788888888888888888888764 4567788888888888888888888888887764 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 007510 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (601)
.|...|++++|...|+++... .| +...+..+..... ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
Confidence 888888888888888888765 34 3333333311000 0011122334444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (601)
.|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555554444433 334444444445555555555555555544443322 344444444445555555555555
Q ss_pred HHHHHHCCCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 007510 327 LQEAKNQGISVGIISY------------SSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 390 (601)
++...+.. +.+...+ ..+...+.+.|++++|...++++.+.. +.+. ..+..+...+.+.|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 55444432 1122221 123455667777777777777766543 1122 2244466677777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++|+..+++..+.. +.+..++..+...+...|++++|...++++.+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777776631 22566677777777777777777777777776
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-18 Score=167.74 Aligned_cols=319 Identities=12% Similarity=0.044 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (601)
+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4566677777888888888888888877654 4457777888888888888888888888877653 3356677777778
Q ss_pred HhccCCHHHHHHHHHHhhhCCCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHPVDP---D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (601)
+...|++++|...++++... .| + ...+..+...+. ...+..+...+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 88888888888888877643 34 2 222222211100 12344557788999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (601)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (601)
|++++|.+.++++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999887553 77889999999999999999999999999875 567889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHH------------HHHHHHcCCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhhcCCH
Q 007510 363 EHMKSIKLKPTVSTMNA------------LITALCDGDQLPKTMEVLSDMKSLGLCPNT-----ITYSILLVACERKDDV 425 (601)
Q Consensus 363 ~~m~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~ 425 (601)
++..+.. +.+...+.. +...+.+.|++++|...++++.+. .|+. ..+..+...+...|++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 9998754 334444432 366789999999999999998874 3443 2355677889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhHHH
Q 007510 426 EVGLMLLSQAKEDGVIP-NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS 484 (601)
Q Consensus 426 ~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 484 (601)
++|...++++.+. .| +...+..+...+.+ ++++|....+.....++ .+...|..
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~ 345 (359)
T 3ieg_A 289 VEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE---NDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT---TCHHHHHH
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChHHHHH
Confidence 9999999999885 34 56667777776655 67778777666555443 34444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-18 Score=180.75 Aligned_cols=389 Identities=12% Similarity=0.039 Sum_probs=279.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007510 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (601)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (601)
..+...+..+...|++++|++.|+++. +.++..|..+...+.+.|++++|++.++.+.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344556666777888889999888753 5678888889999999999999999999988875 557888888999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHH------------
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVF------------ 200 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~------------ 200 (601)
..|++++|.+.|+. ... .|+ .....+..+...+....|...++++... ...|+....
T Consensus 105 ~~g~~~~A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999863 322 222 2233344556666677888888887543 112222221
Q ss_pred ------------------HHHHHHHhc--------cCCHHHHHHHHHHhhhCCCCCCCC--------HHHHHHHHHHHHh
Q 007510 201 ------------------NALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACAN 246 (601)
Q Consensus 201 ------------------~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~ 246 (601)
..+...+.. .|++++|..+++++... .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHh
Confidence 122222222 14788999999988754 333 2246666778888
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (601)
.|++++|...|+.+.+.. |+..++..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 44788889999999999999999999998887544 678888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--
Q 007510 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-- 404 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 404 (601)
++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|++++|...|+++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99988875 4456788889999999999999999999988764 4456788889999999999999999999976532
Q ss_pred ---CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhh
Q 007510 405 ---LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE 466 (601)
Q Consensus 405 ---~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~ 466 (601)
.......+......+... |++++|...++++.+... .+...+..+..++.+ ++++|....+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 111222344455667777 999999999999887532 244556666666543 4444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-18 Score=164.45 Aligned_cols=280 Identities=12% Similarity=0.019 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (601)
+..+...+...|++++|.++|+++.+.. +.+..++..++..+...|++++|...++++.... +.+...|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3333444444444444444444443332 2223333334444444444444444444443321 2223334444444444
Q ss_pred cC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 210 SG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 210 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
.| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 103 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 44 4444444444443221 1123334444444444444444444444444432 22233344444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKALE 360 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (601)
.+.+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|++++|..
T Consensus 179 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5555444443322 34444444444455555555555554443321 02223455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 007510 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (601)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 419 (601)
.|++..+.. +.+...|..+...|.+.|++++|...|++..+. .| +...+..+..++
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 555555432 223455555555555555555555555555542 23 334444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=163.01 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
+.+...+..+...+...|++++|..+|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456677788888899999999999999998875 4566677778888999999999999999998864 4567889999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 007510 169 IDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (601)
Q Consensus 169 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (601)
...+...| ++++|...|++..... +.+...|..+...+...|++++|.+.++++.... +.+...+..+...|...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 99999999 9999999999998764 4457788899999999999999999999988642 33456777788999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCC
Q 007510 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGK 319 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 319 (601)
|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999876 6678899999999999999999999999987642 12345788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 007510 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (601)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 390 (601)
+++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999999998875 4567889999999999999999999999988764 34677888888877 455544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-15 Score=155.42 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=299.1
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHh----cCChHHHHHH
Q 007510 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (601)
Q Consensus 44 A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~ 114 (601)
++..+....+.| +...+..+...+.. .+++++|+..|.+.. ..++..+..+...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555544 33333444444544 578899999998654 3577788888888988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007510 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (601)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (601)
|+...+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 66778888888888 789999999999998865 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 007510 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (601)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~ 258 (601)
+..+.| +...+..+...|.. .++.++|.+.|...... .+...+..+...|.. .+++++|...|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888887 89999999999998764 355677778888876 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (601)
+..+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..+...|... +++++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988765 45778888888887 899999999999988775 556777788888877 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 007510 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (601)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 402 (601)
..+.+ +...+..+...|...| +.++|.+.|++..+. .+...+..|...|.. .+++++|+..|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99876 4567788888888766 789999999999885 477888899999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCC
Q 007510 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (601)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~g~~ 441 (601)
.| +...+..+...|.+ .+++++|...|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 57778888888887 89999999999999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-16 Score=161.18 Aligned_cols=408 Identities=11% Similarity=0.072 Sum_probs=260.5
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCHHHHHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (601)
+|.+...-..... +.+.|++++|+.+|+++.+.. |.+..++..++..+.+.|++++|.++|++.. .|+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4555555444444 356899999999999999876 7777777778888888889999999998764 3677778777
Q ss_pred HHHH-HhcCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCH
Q 007510 99 MSVC-ASSKDSEGAFQ----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNV 162 (601)
Q Consensus 99 i~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~ 162 (601)
+... ...|+++.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.++....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 35677777665 66665543 4433 56777777776654 67888999999998873111112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHhcc--
Q 007510 163 HTYGALIDGC-------------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS-- 210 (601)
Q Consensus 163 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~-- 210 (601)
..|....... .+.+++..|..++..+ .+.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3443322211 1234566666666552 2211 2333 23444444322211
Q ss_pred --CCH----HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCCCHH
Q 007510 211 --GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPE 270 (601)
Q Consensus 211 --g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~ 270 (601)
++. ..+..+|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+..
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred cCCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 3566677776653 23345566666666654 57766 7788887777532245677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA- 348 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 348 (601)
.|..++..+.+.|++++|..+|+++.+.... +. ..|...+..+.+.|++++|..+|++..+.. +.+...+......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 7888888888888888888888887775322 22 467777777777788888888888777653 2223333322222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCH
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDV 425 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~ 425 (601)
+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 335778888888888776542 3356777777777778888888888888877642 2232 34676777777777888
Q ss_pred HHHHHHHHHHHH
Q 007510 426 EVGLMLLSQAKE 437 (601)
Q Consensus 426 ~~a~~~~~~~~~ 437 (601)
+.+..++.++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777777765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-15 Score=152.87 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=285.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHh----cCCh
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~ 108 (601)
.+++++|+..|++..+.+ +...+..+...+.. .++.++|++.|++.. ..++..+..+...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 799999999999999876 23344456666666 678999999998764 4567788888888888 7899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (601)
++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.| +..++..|...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998875 57788888888887 789999999999998864 78889999999998 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCChhH
Q 007510 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (601)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 252 (601)
|.+.|++..+.| +...+..+...|.. .++.++|..+|+..... .+...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998876 56777788888875 78999999999998753 345567777778887 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 007510 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (601)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~ 324 (601)
|...|++..+.+ ++..+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 467888888888887 89999999999999875 4567777777887766 789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHH
Q 007510 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 396 (601)
..|++..+.+ ++..+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888899999998 899999999999999854 67788889999988 8999999999
Q ss_pred HHHHHhCCC
Q 007510 397 LSDMKSLGL 405 (601)
Q Consensus 397 ~~~m~~~g~ 405 (601)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999988653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=166.45 Aligned_cols=297 Identities=11% Similarity=-0.020 Sum_probs=168.8
Q ss_pred hHHHHHHHH-HHhhCC---CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 74 QKAIKEAFR-FFKLVP---NP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (601)
Q Consensus 74 ~~~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (601)
.|++++|+. .|++.. +. +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666766 665432 11 23456666667777777777777777777654 4456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+...+..+... ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~---------- 177 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG---------- 177 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh----------
Confidence 777777766654 3456666777777777777777777777766553 1111111111000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (601)
...+. ..+..+.. +...|++++|...|+.+.+.. +. +..++..+...|.+.|++++|...|+++...... +
T Consensus 178 ---~~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 250 (368)
T 1fch_A 178 ---GAGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-D 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ---hhccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-C
Confidence 00000 01111222 226667777777777776654 22 4666777777777777777777777776665332 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----------PT 373 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~ 373 (601)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666777777777777777666553 344566666666777777777777776666542110 01
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHH
Q 007510 374 VSTMNALITALCDGDQLPKTMEVLS 398 (601)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~ 398 (601)
..+|..+..+|...|++++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4566666666666666666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-17 Score=162.55 Aligned_cols=301 Identities=11% Similarity=-0.042 Sum_probs=200.7
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCch----HHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCCh
Q 007510 37 RQGRISECID-LLEDMERKGLLDMD----KVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 37 ~~g~~~~A~~-~~~~m~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~ 108 (601)
..|++++|+. .|++..... |.+ ......++..+...|++++|+..|+++ .+.+...|..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFE--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCC--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcC--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 4578888888 887665443 222 223445667777889999999999875 356788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.... +.+...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h
Confidence 99999999999876 5688999999999999999999999999999874 2233333222110 00 0
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 007510 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (601)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (601)
. .+ ...+..+.. +...|++++|...++++.... +..++..++..+...|.+.|++++|...|+++.+.. +.+
T Consensus 179 ~----~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 A----GL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred h----cc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 00 011111222 226667777777777766531 111145667777777777777777777777776664 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCC
Q 007510 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI----------SVG 338 (601)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~ 338 (601)
..+|..+...+...|++++|...|+++.+.... +...+..+...|.+.|++++|...++++.+... +..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 677777777777778888888877777765432 566777777777788888888887777765421 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
..+|..+..+|.+.|+.++|..++++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 57788888888888888888877663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-15 Score=154.05 Aligned_cols=397 Identities=10% Similarity=0.064 Sum_probs=281.8
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007510 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (601)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 124 (601)
|++.++.+ |.+...+..++.. .+.|++++|+.+|+++. +.+...|..++..+.+.|++++|..+|+++.+. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 6666666666664 55688999999998764 456778999999999999999999999999976 4
Q ss_pred CCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHH-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007510 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVN-AGIE-PNVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (601)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (601)
|+...|...+... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 45677777665 7777654 3544 356788888877655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHh------hhCC-CCCCCC--------HHHHHHH
Q 007510 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPD--------HITIGAL 240 (601)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~A~~~~~~~------~~~~-~~~~~~--------~~~~~~l 240 (601)
......+....|....... ...+++..|..++... .... ..++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8732111123443322211 1345667777776652 1110 012443 2345554
Q ss_pred HHHHHhc----CCh----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHC
Q 007510 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (601)
Q Consensus 241 l~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~ 298 (601)
+...... ++. .++..+|++..... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4333221 232 37778899888874 6778999999988876 68876 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (601)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (601)
-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|+++|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 222367889999999999999999999999999864 2233 589999999999999999999999998753 2233333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHH
Q 007510 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGM 453 (601)
Q Consensus 378 ~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g-~~p~--~~~~~~li~~ 453 (601)
...... +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|+.+|++....+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 322222 346899999999999988742 3357889999999999999999999999999863 2332 3456555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-17 Score=160.15 Aligned_cols=266 Identities=11% Similarity=-0.059 Sum_probs=174.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
.+...|..+...+.+.|++++|...|+.+.+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888999999999999999999999875 5678899999999999999999999999998764 45688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-----------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 238 (601)
..|...|++++|+..|+++.... |+. ..+..+...+...|++++|.+.++++.... +-.++..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999987642 221 122233556666667777777776666531 1111455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|++..+.... +..++..+...|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 66666666666666666666666654 445566666666666666666666666666654322 4555666666666666
Q ss_pred CHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELY 362 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (601)
++++|...++++.+.... .+...|..+..++...|+.+.+.++.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666665442100 02344555555555555555544443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-17 Score=160.80 Aligned_cols=270 Identities=13% Similarity=0.036 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (601)
+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.... +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444555555555555555544432 2334444455555555555555555554444332 2234444444444444
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
.|++++|...++++... .|+... +..+ ......+..+...+...|++++|
T Consensus 146 ~g~~~~A~~~~~~al~~----~p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ----NPKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp TTCHHHHHHHHHHHHHH----CHHHHCC--------------------------------------------CCHHHHHH
T ss_pred cccHHHHHHHHHHHHHh----CccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 44444444444444321 111000 0000 00123344556677777777777
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 289 CSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 289 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
.+.|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..+++.+..+|.+.|++++|...|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777765432 156677777777777777888877777777654 44567777788888888888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-------------NTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
.. +.+..+|..+...|.+.|++++|...|+++.+. .| +..+|..+..++...|+.+.+..+..+
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 53 334677777888888888888888888877652 12 245677777788888887777766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-16 Score=152.31 Aligned_cols=280 Identities=10% Similarity=-0.022 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (601)
+...|..+...+...|++++|..+|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456777788888899999999998888765 4577788888888889999999999998888764 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHH--HHHhcC
Q 007510 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANAG 248 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g 248 (601)
.|...|++++|.+.|+++.... +.+...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 8888999999999888887663 1122222222000 000001111111 144555
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (601)
++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666555544 344555666666666666666666666665554322 45556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhHHHHHH
Q 007510 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEVL 397 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~ 397 (601)
++.+.. +.+..++..+...|.+.|++++|.+.|+++.+..... +...|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 665543 3345566666666666666666666666665432110 3556666677777777777776666
Q ss_pred HHH
Q 007510 398 SDM 400 (601)
Q Consensus 398 ~~m 400 (601)
++.
T Consensus 310 ~~~ 312 (327)
T 3cv0_A 310 AQN 312 (327)
T ss_dssp TCC
T ss_pred HHH
Confidence 543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=179.62 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
-..+||+||++|++.|++++|.++|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345666666666666666666666665543 35566666666666666666666666666666666666666666666
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 415 LLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 415 ll~a~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+++++.+.|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666665 35666666666666666666666666655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-16 Score=147.44 Aligned_cols=255 Identities=12% Similarity=0.151 Sum_probs=151.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChH
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (601)
.....+..|++..|+..++...... |.+. .....+++.+...|++++|+..++...+|+..++..+...+...++.+
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 3445566777777777766554332 3332 233445566666667777776666555555566666666666667777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 110 GAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
+|++.++.+...+..| +...+..+..++...|++++|++.+++ +.+..++..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777666654333 445555555666677777777776665 345666666666777777777777777766
Q ss_pred HhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 007510 189 RSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (601)
Q Consensus 189 ~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (601)
.... |+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++..+.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6552 332211 11223333446666666666666553 23455566666666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 007510 266 KGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG 299 (601)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~ 299 (601)
+.++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4556666666666666666654 455666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-17 Score=157.53 Aligned_cols=289 Identities=15% Similarity=0.145 Sum_probs=121.1
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007510 30 HSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 30 ~~~~~l~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (601)
...+.|+ +.|++++|.+.++++... .+...++..+.+.|++++|++.|.+. +|...|..++..+...|++
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCH
Confidence 3445555 678888888888888432 24446777777888888888888664 4666888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
++|...++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8888877666653 4557778888888888888888887774 367778888888888888888888888876
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 007510 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (601)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (601)
..|..++.++.+.|++++|.+.+..+ .+..+|..++.+|...|+++.|...... +...
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ 206 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 206 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTC
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhC
Confidence 36888888888888888888888876 2567888888888888888888554443 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHH
Q 007510 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GII 340 (601)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~ 340 (601)
+.-...++..|.+.|++++|..+++...... ......|+-+.-+|++- +++.+.++.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445568888888888888888888877654 33556666666666653 334444444431 122222 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 007510 341 SYSSLMGACSNAKNWQKALEL 361 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~ 361 (601)
.|..++-.|.+.++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 678888888888888887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-16 Score=152.26 Aligned_cols=275 Identities=12% Similarity=0.040 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
.+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+++.... +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44555666667777777777777766553 3356666667777777777777777777766543 335566666666666
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDW 285 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 285 (601)
..|++++|.+.++++.... |+. ..+..+... .++......+ .. .+...|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS----TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 7777777777776665431 211 111111000 0011111122 22 37788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (601)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (601)
++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887544 78889999999999999999999999998875 556888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHH
Q 007510 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------------TITYSILLVACERKDDVEVGLMLL 432 (601)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~ 432 (601)
.+.. +.+..+|..+...|.+.|++++|.+.|+++.+. .|+ ..+|..+..++.+.|++++|..++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8754 456889999999999999999999999998774 344 678899999999999999999998
Q ss_pred HHHH
Q 007510 433 SQAK 436 (601)
Q Consensus 433 ~~~~ 436 (601)
++..
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 7554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=162.68 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=133.8
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (601)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (601)
...|++++|.++++++++|+ +|..++.++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35577999999999996654 899999999999999999999965 3577799999999999999999999887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC
Q 007510 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (601)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 231 (601)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 77664 5667889999999999999999988874 4677899999999999999999999999761
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (601)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (601)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++
T Consensus 150 ----n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 150 ----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 5888999999999999999999988 25789999999999999999996655442 22444456788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (601)
..|.+.|++++|..+++...... +-....|+-|.-.|++- +++.+..+.|.. +.+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987665 55677788887777764 455566665552 222222 34568889999
Q ss_pred HHcCCChhHHHHH
Q 007510 384 LCDGDQLPKTMEV 396 (601)
Q Consensus 384 ~~~~g~~~~A~~~ 396 (601)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=176.09 Aligned_cols=150 Identities=13% Similarity=0.212 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
..+||++|++|++.|++++|.++|+.|. +.|+.||++|||+||++|++.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC------HHHHHHHH
Q 007510 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (601)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~ll 241 (601)
|.++++.|+ .++|.++|++|.+.|+.||.++|+.++.+..+. .+++.++++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 478999999999999999999999998766554 3334444432 234443 45556677
Q ss_pred HHHHhcC
Q 007510 242 KACANAG 248 (601)
Q Consensus 242 ~~~~~~g 248 (601)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-15 Score=143.57 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=114.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (601)
...|+++.|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445555555554443322 1221 23334445555555555555443321 13344444455555555555555
Q ss_pred HHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 216 AFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 216 A~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
|++.++++... +..| +...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|++
T Consensus 84 A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555554432 1112 233334444555555555555555544 33445555555555555555555555555
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007510 295 MTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (601)
Q Consensus 295 m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (601)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55442 221100 111122223345555555555555442 3445555555555555555555555555544432 2
Q ss_pred CCHHHHHHHHHHHHcCCChhH-HHHHHHHHHh
Q 007510 372 PTVSTMNALITALCDGDQLPK-TMEVLSDMKS 402 (601)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 402 (601)
.+..++..++..+...|+.++ +.++++++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 244455555555555555543 3445555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-15 Score=150.68 Aligned_cols=211 Identities=10% Similarity=-0.028 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhC------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--C
Q 007510 63 YHARFFNVCKSQKAIKEAFRFFKLV------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G--L 123 (601)
Q Consensus 63 ~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~ 123 (601)
++..++.++...|+.++|++.|++. .+....+|+.+..+|...|++++|...+++..+. + .
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3344444444555555555555432 1122345555555555566666665555554331 0 0
Q ss_pred CCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 124 KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
.....++..+..++... +++++|++.|++..+.. +-++..+..+... +...++.++|++.|++..+.. +.+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchH
Confidence 11233444443333332 24555666665555442 2233333333333 223344555555555554432 22333
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007510 199 VFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (601)
Q Consensus 199 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (601)
.+..+...+.. .++.++|.+.+++.... .+.+..++..+...|.+.|++++|...+++..+.. +.+..++..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 44333333322 23445555555554432 12334445555555555566666666555555543 334444544
Q ss_pred HHHHH
Q 007510 275 AINCC 279 (601)
Q Consensus 275 li~~~ 279 (601)
+...|
T Consensus 287 lg~~y 291 (472)
T 4g1t_A 287 IGCCY 291 (472)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-13 Score=145.12 Aligned_cols=375 Identities=14% Similarity=0.177 Sum_probs=272.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 007510 29 LHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (601)
..+...++..|.+.+|+.+++++.-.+. ++.+......++....+. +.....++..+....+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 3444566799999999999999985432 234555555444433332 2333333333333222 3447778889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (601)
+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999862 12223344433 7788999999998663 578899999999999999999999976
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007510 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (601)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (601)
. -|...|..++.++.+.|++++|.+.+....+. .++....+.++.+|++.+++++..... + .+
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 5 37788899999999999999999999887654 234333445889999999988644332 1 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (601)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (601)
+...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5567778999999999999999999985 36999999999999999999999876 35789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh--cCC
Q 007510 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER--KDD 424 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~--~g~ 424 (601)
+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.... +.|. ...|+-+...+++ .++
T Consensus 1259 acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHH
Confidence 9999999999998776543 5667788999999999999999999988775 3343 3345445444444 555
Q ss_pred HHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHh--hHHHHH
Q 007510 425 VEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (601)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p------~~~~~~~li~~~~~--~~~~a~ 462 (601)
..++.+.|..-. .+.| +...|.-++-.|.+ .+++|-
T Consensus 1332 lmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1332 MREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 666666665322 2222 34567777777654 344443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-14 Score=147.23 Aligned_cols=374 Identities=10% Similarity=-0.062 Sum_probs=215.2
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-------C--
Q 007510 30 HSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-- 89 (601)
Q Consensus 30 ~~~~~l~----~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-- 89 (601)
..||.|. ..|++++|++.|++..+. ...+........++.++...|++++|...|+++. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3455444 789999999999887642 1123445566678888888899999988887541 1
Q ss_pred --CCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCH
Q 007510 90 --PTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNV 162 (601)
Q Consensus 90 --~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (601)
....++..+..++.. .+++++|...|++..+.. +.+...+..+..+ +...++.++|++.+++..+.. +.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 234566666555554 457999999999999875 4456666655555 445678889999999988764 4466
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 007510 163 HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (601)
Q Consensus 163 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 238 (601)
.++..+...+.. .++.++|.+.+++..... +.+...+..+...|...|++++|...+.+.... .+.+..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHH
Confidence 677666655554 467889999999987764 557788899999999999999999999998864 233455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
.+...|...+... .... ...........+.++.|...+++..+.... +..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6655553221100 0000 000000111122345566666665554322 3334555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007510 319 KVEAAFEILQEAKNQGISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (601)
++++|...|++..+....+... .+..+.. .+...|+.++|+..|++..+. .|+...+... ...+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHH
Confidence 6666666666666554222211 1122221 223556666777666666653 3433222211 122334
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 396 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
++++..+.+ +.+..+|..+...+...|++++|.+.|++.++.
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444444321 334556666666777777777777777766654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-12 Score=137.10 Aligned_cols=339 Identities=12% Similarity=0.119 Sum_probs=252.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (601)
...++..|.+++|..+|++... ... ....+ ....+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~-A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTS-AVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHH-HHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 4456689999999999998531 111 11111 225678999999998774 466788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++.... ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9999653 477888899999999999999999999877653 4444455699999999998853333 22
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 007510 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (601)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (601)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 446677778889999999999999999874 27888999999999999999999876 34578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999888866542 2356677789999999999999999998887655 4455667666666665
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHHHH-------------HHHHHhCCCCCCHH
Q 007510 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTMEV-------------LSDMKSLGLCPNTI 410 (601)
Q Consensus 352 ~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~ 410 (601)
. +++.++.+.|..-.. ++| +...|.-++..|.+.|+++.|... |.+... -..|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~e 1402 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVE 1402 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHH
Confidence 4 456667777664332 222 456799999999999999999832 222221 134566
Q ss_pred HHHHHHHHHhhcC
Q 007510 411 TYSILLVACERKD 423 (601)
Q Consensus 411 t~~~ll~a~~~~g 423 (601)
.|...+.-|....
T Consensus 1403 lyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1403 LYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhhC
Confidence 6666666665554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=129.31 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007510 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (601)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (601)
.+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444333322 2223333444444444444444444444433321 122333444444444444
Q ss_pred ChhHHHHHHHHH
Q 007510 389 QLPKTMEVLSDM 400 (601)
Q Consensus 389 ~~~~A~~~~~~m 400 (601)
++++|...|++.
T Consensus 222 ~~~~A~~~~~~a 233 (258)
T 3uq3_A 222 EYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=141.21 Aligned_cols=344 Identities=11% Similarity=0.026 Sum_probs=186.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHH---HHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 007510 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (601)
......+.+.|++++|.+.|++..+.|.. ... ..+..++...|+. ++|++.|++..+.++..+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 44556667888888888888888877632 111 1222233334555 7888888776655666677776655555
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 106 K-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (601)
Q Consensus 106 g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (601)
+ ++++|...|+...+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4 67788888888877663 22 5556666666655433 3444444444433 34566667777777664
Q ss_pred HHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc---
Q 007510 178 VAKAFG----AYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (601)
Q Consensus 178 ~~~A~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 247 (601)
++++.. +++..... +...+..|...|...| +.++|++.|......+ +++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGS
T ss_pred cccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCC
Confidence 443333 33333222 2236666666676677 7777777777766542 34444444555555443
Q ss_pred -CChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 007510 248 -GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----- 318 (601)
Q Consensus 248 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 318 (601)
+++++|...|++.. .+ ++..+..|... | ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 56777777777665 32 34556666555 3 45677777777777776665 4455555555555 34
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 007510 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (601)
++++|...|++.. .| ++..+..|...|.. ..+.++|...|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 6777777776655 32 45556666666655 336677777777666544 22334444444443 3456
Q ss_pred hHHHHHHHHHHhCC
Q 007510 391 PKTMEVLSDMKSLG 404 (601)
Q Consensus 391 ~~A~~~~~~m~~~g 404 (601)
++|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=128.30 Aligned_cols=223 Identities=9% Similarity=0.023 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (601)
..|..+...+...|++++|...|+...+.. .+..++..+..++...|++++|.+.|++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666666677777777776666655 5566666666666666777776666666654320 011 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (601)
.+...|...|++++|...|++.... .|+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence 6666666666666666666666553 2332 2233445555555555555442 11223344445555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (601)
.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555555443 334455555555555555555555555555443321 344444444455555555555555
Q ss_pred HHHHH
Q 007510 327 LQEAK 331 (601)
Q Consensus 327 ~~~~~ 331 (601)
+++..
T Consensus 230 ~~~a~ 234 (258)
T 3uq3_A 230 LDAAR 234 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=124.89 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444444444443332 223333333334444444444444444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=125.24 Aligned_cols=209 Identities=13% Similarity=-0.018 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007510 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (601)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (601)
++...+..+...+.+.|++++|...|++.... -+.+...+..+...+.+.|++++|...|++..+.+ +.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE---NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 34444445555555555555555555554432 12234444445555555555555555555555443 334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
+...+...+ ... +. .....|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 79 lg~~~~~~~-------------~~~--~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 79 LSEAYVALY-------------RQA--ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHH-------------HTC--SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh-------------hhh--hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC
Confidence 555554440 000 00 0000055555555555555443 2234445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
+++|...|++..+.. .+...+..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555443 445555555555555555555555555554421 12344455555555555555555555544
Q ss_pred H
Q 007510 435 A 435 (601)
Q Consensus 435 ~ 435 (601)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-12 Score=119.24 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777777888888888887777654 4466777777777777778888877777776653 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (601)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+++..... +.+...+..+...|...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777777777777777776632233 34455666666777777777777777665431 23355566666666667777
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777776666544 445566666666666666666666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-13 Score=124.64 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007510 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (601)
...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..............+..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 333444444444444444444331 1122233334444444444444444444443311000001122333444444444
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
++++|...|++..+.. +.+..+|..+...|...|++++|.+.|++..+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 4444444444444332 22333444444444444444444444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-12 Score=120.09 Aligned_cols=201 Identities=11% Similarity=0.021 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3456666677777777777777777777664 456677777777777778888888877777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (601)
+...|++++|...++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777788888888877776622223 45667777777788888888888888777643 3456777777788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
|...++++.+. .+.+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888887764 2345666777777777888888888888877763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-12 Score=116.24 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (601)
.|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233344444444444444444444444443332 223333334444444
Q ss_pred hc-CCHHHHHHHHHHHH
Q 007510 174 KA-GQVAKAFGAYGIMR 189 (601)
Q Consensus 174 ~~-g~~~~A~~~~~~m~ 189 (601)
.. |++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKAL 104 (225)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 44 44444444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-12 Score=128.11 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
+...|+.+...+.+.|++++|+..++.+++.. +-+..+|+.+..++...|+ +++|+..|++.++.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567777788888888888888888888765 4567788888888888886 888888888888765 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cC
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AG 248 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g 248 (601)
..+...|++++|+..|+++.... +-+...|..+..++...|++++|+..++++.... +.+...|+.+..++.+ .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 88888888888888888887764 4467778888888888888888888888877641 3356677777777777 55
Q ss_pred ChhHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 007510 249 QVDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (601)
Q Consensus 249 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--- 318 (601)
..++| +..|++..+.+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 46677776665 556677777777777766 567777777766 332 225566666666666653
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHH
Q 007510 319 ------KVEAAFEILQEA-KNQGISVGIISYSSLMGA 348 (601)
Q Consensus 319 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~ 348 (601)
..++|.++++++ .+.. +.....|..+...
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~ 362 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRS 362 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 246677777766 4432 2333444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.6e-12 Score=115.26 Aligned_cols=205 Identities=12% Similarity=-0.002 Sum_probs=171.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 356678888899999999999999999988764 4567889999999999999999999999988764 45677888899
Q ss_pred HHHhcc-CCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007510 205 TACGQS-GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (601)
Q Consensus 205 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (601)
..+... |++++|...++++... +..| +...+..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 999999 9999999999998761 2233 35678888889999999999999999988875 55688899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
|++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999998876542367777888888889999999999999887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-13 Score=134.25 Aligned_cols=342 Identities=11% Similarity=-0.014 Sum_probs=234.6
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 007510 67 FFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (601)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (601)
+.....+.|++++|+++|.+... .++..+..+...+...|+. ++|...|+...+. +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 44556678999999999987542 3455566677777778888 8999999988754 5566667777555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--
Q 007510 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (601)
Q Consensus 142 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 212 (601)
++++|...|++..+.| +...+..|...|...+..+ .+.+.+......| +...+..+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999999876 2337778888888765543 4555566555555 34556667777777764
Q ss_pred --HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 007510 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (601)
Q Consensus 213 --~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (601)
.+++..++..... ..|+ .+..+...|.+.| +.++|.+.|++..+.+ +++...+..|...|... +
T Consensus 159 ~~~~~a~~~~~~a~~----~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALN----TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTT----TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHc----CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 4555555555443 2344 7778888899999 8999999999999988 66677667788888665 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (601)
++++|.+.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44556666655 3 46899999999999999887 6778888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHH
Q 007510 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (601)
++|.+.|++.. ..+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3577788888888776 4489999999999988763 3334455555543 568999
Q ss_pred HHHHHHHHHHCCC
Q 007510 428 GLMLLSQAKEDGV 440 (601)
Q Consensus 428 a~~~~~~~~~~g~ 440 (601)
|..+++...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998774
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-12 Score=121.45 Aligned_cols=231 Identities=10% Similarity=-0.061 Sum_probs=118.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhc
Q 007510 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQ 209 (601)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 209 (601)
.....+...|++++|...|++..+.. +.+..++..+...|...|++++|+..|++....+..|+ ...|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444555555555555555555442 22333555555555555555555555555554221111 2224555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
.|++++|.+.|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655554421 2233455556666666666666666666555543 444555555552222334666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 359 (601)
+.|++..+.... +...+..+...+...|+ .++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666554322 34455555555555555 555555555544321 0111 134555555666666666666
Q ss_pred HHHHHHHhC
Q 007510 360 ELYEHMKSI 368 (601)
Q Consensus 360 ~~~~~m~~~ 368 (601)
+.|++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-11 Score=113.47 Aligned_cols=221 Identities=11% Similarity=-0.007 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 007510 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (601)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 237 (601)
..++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++.... .+...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHH
Confidence 3344444444445555555555555444421 23344444444444 44555555555444432 133344
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (601)
Q Consensus 238 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (601)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444444444 555555555555544432 33445555555555 555555555555555443 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (601)
Q Consensus 310 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (601)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444 455555555555554443 23444445555555 555555555555555432 244444455
Q ss_pred HHHHc----CCChhHHHHHHHHHHh
Q 007510 382 TALCD----GDQLPKTMEVLSDMKS 402 (601)
Q Consensus 382 ~~~~~----~g~~~~A~~~~~~m~~ 402 (601)
..|.+ .+++++|.+.|++..+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHH
Confidence 55555 5555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-12 Score=126.39 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (601)
...|..+..++.+.|++++|++.|++.++.. +-+..+|+.+...+...|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777788888888999999988888764 4467788888888888886 888888888888764 446778888888
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 007510 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (601)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (601)
++...|++++|+..|+++... -+.+...|..+..++.+.|++++|+..|+++.+.+ +.+..+|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l---dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888764 13456777888888888888888888888888876 5677888888888887 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007510 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (601)
Q Consensus 285 ~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (601)
.++| +..|++.+..... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4667776665443 5566777766676666 567777777666 32 2445666677777776653
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 007510 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITAL 384 (601)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 384 (601)
..++|.++|+++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246777777776 4432 22234555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=127.40 Aligned_cols=94 Identities=11% Similarity=-0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (601)
.|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444444444444444444444444432 2234444444444444444444444444444332 223334444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 007510 174 KAGQVAKAFGAYGIMR 189 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~ 189 (601)
+.|++++|...|+++.
T Consensus 123 ~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-13 Score=122.59 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
.....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344556666777777778888888777777653 4466777777777777788888888777777653 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (601)
..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCC
Confidence 77777777777777777776653 345666667777777777777777777776653 13345566666677777777
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
+++|...|+.+.+.. +.+..++..+...|...|++++|.+.++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777766654 4456667777777777777777777777766654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-11 Score=114.21 Aligned_cols=224 Identities=12% Similarity=-0.009 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHH
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (601)
+..++..+...+...|++++|.+.|++.... .+...+..+...|.. .+++++|...|++..+.+ ++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5677888888999999999999999998762 345677888889999 999999999999998876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007510 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (601)
Q Consensus 272 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (601)
+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999998875 67888889999998 999999999999999876 567788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (601)
Q Consensus 344 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (601)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 999999999999998753 56788889999999 999999999999998864 36777888
Q ss_pred HHHHhh----cCCHHHHHHHHHHHHHCC
Q 007510 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~~~~~g 439 (601)
...+.+ .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=128.66 Aligned_cols=246 Identities=10% Similarity=-0.034 Sum_probs=129.9
Q ss_pred cCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (601)
.|++++|+..++.+.+... +.+..++..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3455666666665554421 1134455566666666666666666666665543 33456666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007510 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (601)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (601)
...|++..... +.+...+..+...+...|++++|...++++... .|+.......+..+...|++++|...++...
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666665542 234555666666666666666666666666542 2333333333334455566666666665555
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
... +++...+. ++..+...++.++|...+.+........ +...+..+...+...|++++|...++++.+.. +.+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 248 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN 248 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh
Confidence 443 33333332 4455555566666666666554332110 13455556666666666666666666665543 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELY 362 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~ 362 (601)
. .....++...|++++|.+-+
T Consensus 249 ~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C---HHHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHHhhHHHH
Confidence 1 22233455556666665544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=120.95 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
..+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...++++.+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 333344444444444444444444433321 12233444444444444444444444444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-10 Score=117.47 Aligned_cols=404 Identities=8% Similarity=0.004 Sum_probs=264.6
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH---HHHHHHHHhhCC-----CCCHHHH
Q 007510 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (601)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (601)
+..+|..|+ +.+.++.+..+|+++...- |....+....+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455666665 6789999999999999875 6777777777777777788 999999998753 2788899
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHH
Q 007510 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVN 155 (601)
Q Consensus 96 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~ 155 (601)
...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9888766665543 334477776554 465 44 45688877766542 3456788899999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 007510 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (601)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p-----~---~ 197 (601)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3211122333222211111 1223445555544321 111 1 1 0 1
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHhcCCCCCH
Q 007510 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (601)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~ 269 (601)
..|...+.---..+ ..+.+..+|++.... ++-....|...+..+.+.|+.++|. .+|++..... +.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCH
Confidence 23444443322222 123455677777653 3445667777777778888888886 9998888753 6677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (601)
..|...+...-+.|+++.|.++|+.+..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888889999999999988775310 132 2357777777777888999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 329 EAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
.+.+.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 888761122234444333333444 4588999999988765 34566777788887788899999999999988753222
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 408 --NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 408 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2356777777778889999999999988874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-11 Score=106.60 Aligned_cols=164 Identities=16% Similarity=0.051 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (601)
.+|..+...|.+.|++++|.+.|++..+.+ +.+..++..+...|.+.|++++|...+......... +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 344445555555555555555555554443 334445555555555555555555555554443322 333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (601)
...++++.+...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 44455555555554444432 2334444444445555555555555555444432 223444444445555555555555
Q ss_pred HHHHHHHh
Q 007510 395 EVLSDMKS 402 (601)
Q Consensus 395 ~~~~~m~~ 402 (601)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-12 Score=128.57 Aligned_cols=302 Identities=14% Similarity=0.028 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CC
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PN 161 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~ 161 (601)
....+......+...|++++|...|+...+.+ +.+ ..++..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455666667777788888888887777664 223 346667777777788888888777775432 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHH
Q 007510 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (601)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A 216 (601)
..++..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566677777777777777777776653210 011 2245555555666666 5555
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (601)
...+.+........ ++. +....++..+...|...|++++|...+++..
T Consensus 167 ~~~~~~al~~~~~~-~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 167 VDFYEENLSLVTAL-GDR-------------------------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHT-TCH-------------------------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCc-------------------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55554432210000 000 0011234444444445555555555444433
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 297 KKGV-IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 297 ~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+... .++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2100 011 1244444455555555555555555443211 000 13345555566666666666666665554
Q ss_pred hCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCCH
Q 007510 367 SIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDV 425 (601)
Q Consensus 367 ~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~ 425 (601)
+... .++ ..++..+...|...|++++|...+++..+ .+-.+. ..++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3100 011 34555566666666666666666665432 111111 33455555556555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-09 Score=111.01 Aligned_cols=394 Identities=12% Similarity=0.050 Sum_probs=269.1
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCC---hHHHHHH
Q 007510 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (601)
Q Consensus 41 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~ 114 (601)
..+-+..|++.+..+ |.+...+..++..+.+.+.++.++.+|+.+. +.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445666778877777 6788888888888888888999999998764 5677789999998888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 007510 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (601)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (601)
|++..... .+|++..|..-+....+.++. +...++|+..+. .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 148888998888776666554 334578887654 465 45 4568888877543
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHh----------ccCCHHHHHHHHHHhhhCCCCC----C-----
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPV----D----- 231 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~----------~~g~~~~A~~~~~~~~~~~~~~----~----- 231 (601)
..++++.+.++|++.+......-..+|.. +..... ....++.|...+.++.....++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 24467889999999985422212233322 222210 0112344455554432110011 0
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 007510 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (601)
Q Consensus 232 ------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~- 289 (601)
| + ...|...+..--..+ ..+.+..+|+++.... +.+...|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134444444322222 1234567788887764 668899999999999999999996
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~ 348 (601)
++|++..... +.+...|...+....+.|+++.|.++|+.+.+... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988753 33666777888888899999999999999876410 12 23468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (601)
..+.|+.+.|+.+|.+..+.........|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 888999999999999998751112334444333333344 4589999999998875 44456667788888888999999
Q ss_pred HHHHHHHHHHCC
Q 007510 428 GLMLLSQAKEDG 439 (601)
Q Consensus 428 a~~~~~~~~~~g 439 (601)
|+.+|++..+..
T Consensus 523 AR~lferal~~~ 534 (679)
T 4e6h_A 523 VKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-10 Score=108.86 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (601)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++.++ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56666777666643 4456666666665542 3554 666677766665 22 334456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH-hcCCh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (601)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +++...|........ ..|+.
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 667777777777666654 332 22 56666666666666666666666665431 122223322222211 24566
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (601)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (601)
++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666555543 3345555566666666666666666666655542 222 2344555555555555555555555
Q ss_pred HHHHHC
Q 007510 328 QEAKNQ 333 (601)
Q Consensus 328 ~~~~~~ 333 (601)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-11 Score=105.69 Aligned_cols=173 Identities=16% Similarity=0.056 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (601)
.++.+|..+...|.+.|++++|++.|++..+..+. +...+..+...|.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 35688999999999999999999999999987655 78889999999999999999999999998875 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 007510 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (601)
..+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999988754 4568889999999999999999999999998842 335778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 007510 427 VGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~ 445 (601)
+|.+.|++.++ +.|+..
T Consensus 159 ~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHh--CCccCH
Confidence 99999999988 456543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-12 Score=126.06 Aligned_cols=281 Identities=14% Similarity=0.015 Sum_probs=178.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 007510 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP- 195 (601)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 195 (601)
.....+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344555566666677777777777777766653 222 245666666666777777777766665321 1111
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (601)
...++..+...+...|++++|...+++....... .++ ......++..+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~-------------------------------~~~~~~~~~~l 133 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LND-------------------------------KVGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-ccc-------------------------------ccchHHHHHHH
Confidence 1223444444555555555555555443321000 000 00012355666
Q ss_pred HHHHHhcCC--------------------HHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 276 INCCSQTGD--------------------WEFACSVYDDMTK----KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 276 i~~~~~~g~--------------------~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (601)
...|...|+ +++|.+.+.+... .+..| ...++..+...+...|++++|...+++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666 7777777766433 11111 2346788888999999999999999987
Q ss_pred HHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 331 KNQGI-SVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 331 ~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
.+... .++ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 65311 111 34788899999999999999999998764210 112 567888999999999999999999987
Q ss_pred HhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 401 KSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 401 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.+. +-.+. ..++..+...+...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 652 11111 456888889999999999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-12 Score=126.60 Aligned_cols=277 Identities=15% Similarity=0.025 Sum_probs=164.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
.+..+...+...|++++|...|++..+.+ +.+. .+|..+...|...|++++|...|++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 34445555666666666666666666542 1122 345556666666666666666666655320
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHH
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----N-IKGTPEVYTIAINCC 279 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~ 279 (601)
... ........++..+...|...|++++|...+++..+. + .+....++..+...|
T Consensus 117 -------------------~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 117 -------------------KSM-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp -------------------HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHc-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 000 000011223344444445555555555554443332 0 011123555666666
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 007510 280 SQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS- 336 (601)
Q Consensus 280 ~~~g~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 336 (601)
...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 66666 66666666654331 1111 1235666677777788888888887776543210
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----
Q 007510 337 VG----IISYSSLMGACSNAKNWQKALELYEHMKSIKL-KP----TVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (601)
Q Consensus 337 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 403 (601)
.+ ..++..+...|...|++++|...|++..+... .. ...++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 23677888888999999999998887764210 01 1457788888999999999999999987652
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
+-.+ ...++..+...+...|++++|.+.+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346778888999999999999999988863
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-10 Score=108.86 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=154.0
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (601)
++|..+|++.... .+.+...|..+...+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556666666542 1233445555555443 34665 77888888877731245666788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 007510 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (601)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (601)
.+.|++++|.++|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888775332 232 67777777778888888888888887764 334455544433322 3688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887643 3467888888888888999999999999988752 455 356788888888889999999999988
Q ss_pred HHHC
Q 007510 435 AKED 438 (601)
Q Consensus 435 ~~~~ 438 (601)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-12 Score=127.26 Aligned_cols=278 Identities=14% Similarity=0.059 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----G-IEPNVH 163 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~ 163 (601)
..+..+...+...|++++|...|+.+.+.+ +.+. .++..+...|...|++++|...|++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556677889999999999999998874 3343 47888889999999999999999987653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCC-----------------HHHHHHHHH
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVVFNALITACGQSGA-----------------VDRAFDVLA 221 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 221 (601)
++..+...|...|++++|...|++.... + .+....++..+...|...|+ +++|.+.+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888888999999999999999887643 1 01123356666677777777 666666665
Q ss_pred HhhhCCC--CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 222 EMNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 222 ~~~~~~~--~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+...... +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5432100 00 011224444555555555555555555544332100 00 1134444444555555555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--- 369 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 369 (601)
+...... +.+. .....++..+...|...|++++|...+++..+..
T Consensus 288 ~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 288 RTLALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 4332110 0000 0012344455555555555555555555444210
Q ss_pred -C-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 370 -L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 370 -~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
. .....++..+...|.+.|++++|...|++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 00123455555566666666666666665554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=121.42 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|...++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555554331 0000 123455555666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=120.98 Aligned_cols=276 Identities=15% Similarity=0.060 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~ 164 (601)
.+......+...|++++|...|+.+.+.. +.+ ...+..+...+...|++++|.+.+++..+. +- +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566777788888888888877764 223 356677777788888888888877775432 11 112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDV 219 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 219 (601)
+..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777777777888888777776643210 011 2245555556666666 5555555
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
+++........ ++. +....++..+...+...|++++|...+++..+..
T Consensus 166 ~~~a~~~~~~~-~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 166 YEENLSLVTAL-GDR-------------------------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHHHH-TCH-------------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCH-------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 54432100000 000 0011234444444455555555555554433210
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 300 V-IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (601)
Q Consensus 300 ~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (601)
. .++ ..++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|...+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 001 1244444555555555555555555543221 00 013345555666666666666666666554310
Q ss_pred C-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 370 L-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 370 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
. ..+ ..++..+...|.+.|++++|...+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 011 33555666666667777777777766655
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-11 Score=118.46 Aligned_cols=307 Identities=9% Similarity=0.016 Sum_probs=139.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--CchHHHHHHHHH--HHhhhHHHHHHH-----------HHHhhC
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-L--DMDKVYHARFFN--VCKSQKAIKEAF-----------RFFKLV 87 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~-~--~~~~~~~~~l~~--~~~~~~~~~~A~-----------~~~~~~ 87 (601)
.+..-+..|-..++.+++++|..+++++.+.-. . ..+...+..++. .....+.++.+. +.++.+
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 456667789999999999999999999876421 1 122222222211 111223333333 333332
Q ss_pred C--CCCHHH------HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007510 88 P--NPTLST------FNMLMSVCASSKDSEGAFQVLRLVQEA----GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (601)
Q Consensus 88 ~--~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (601)
. +.+... +......+...|++++|...++...+. +-.+ ...++..+...|...|++++|...+++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 011111 111333455556666666666655532 1001 12345555555556666666655555544
Q ss_pred HCC--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCC
Q 007510 155 NAG--I----EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (601)
Q Consensus 155 ~~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 227 (601)
+.- . +....+++.+...|...|++++|+..|++...... .++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 221 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ----------------------------- 221 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------------------------
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-----------------------------
Confidence 310 0 00123445555555555555555555554432100 00100
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 007510 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-----YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---- 298 (601)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 298 (601)
....++..+...|...|++++|...|++..+ ...+....++..+...|.+.|++++|...+++..+.
T Consensus 222 ----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 222 ----LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 0012344444444555555555554444433 111222344555555555555555555555544321
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 299 GVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+-......+..+...+...|+ .++|..+++.. +..+ ....+..+...|.+.|++++|...|++..
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000011123344444555555 44444444433 2111 22344555566666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=116.11 Aligned_cols=231 Identities=9% Similarity=-0.058 Sum_probs=148.2
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CCCHHHHHH
Q 007510 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYTI 274 (601)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~ 274 (601)
...+...|++++|...+++.......... ...++..+...|...|+++.|...+++..+... +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455666666666666665542111111 124556666667777777777777766554310 111346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSS 344 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 344 (601)
+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777888888888888888776542110 11 136677777888888888888888877662 22 334567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007510 345 LMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll 416 (601)
+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ .++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888888888888876642 111112335667777888888 77777777765 23333 34566788
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 007510 417 VACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999998888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-11 Score=122.06 Aligned_cols=225 Identities=12% Similarity=-0.004 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (601)
+++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443322 23455555555555555665 66666665555442 2235555555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 007510 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (601)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (601)
+..+. .|+...+..+...+...+. .+ ...+.|++++|...|++..+.. +
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~-------------------~~---------~~~~~g~~~~A~~~~~~al~~~-p 210 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQT-------------------DS---------GDEHSRHVMDSVRQAKLAVQMD-V 210 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCC-------------------SC---------HHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhcc-------------------CC---------hhhhhhhHHHHHHHHHHHHHhC-C
Confidence 55544 3444444444444444400 00 0000155555555555555544 4
Q ss_pred CCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 267 GTPEVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (601)
.+...|..+...|... |++++|++.|++..+.... -+...|..+..+|...|++++|...|++..+.. +
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 289 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P 289 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 4455566666666555 6667777777666654320 256666667777777777777777777766654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 337 VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.+...+..+..++...|++++|.+.+.++.
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455666777777777777777777666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-11 Score=122.89 Aligned_cols=216 Identities=10% Similarity=-0.076 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007510 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (601)
.++++++.+++..... +.+...+..+...+...|++ ++|.+.|++..... +.+...|..+...|.+.|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3566666676665442 34667777777888888888 88888888876531 3346678888888888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------G 318 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g 318 (601)
.|++..+.+ |+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 888888764 5578888888888888 9999999999999987654 688899999999998 9
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007510 319 KVEAAFEILQEAKNQGIS---VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (601)
++++|...|++..+.. + .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 3 578899999999999999999999999998764 4467789999999999999999998
Q ss_pred HHHHHH
Q 007510 396 VLSDMK 401 (601)
Q Consensus 396 ~~~~m~ 401 (601)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 877664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-12 Score=120.70 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CC
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 158 (601)
..++..+...+...|++++|...++.+.+. ..+....++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555666666666666666666665542 11223344555555555666666666655555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 007510 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (601)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 237 (601)
+....++..+...|...|++++|...|++..... ..... ...+.....+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~--~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG--KDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC--TTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC--CCChHHHHHH
Confidence 1123344444555555555555555554443210 00000 0001122334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
..+...+...|++++|...|+++.+. + .+....++..+...|...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555442 1 011234455666666666666666666666553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=111.79 Aligned_cols=241 Identities=12% Similarity=0.033 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 264 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 264 (601)
+..++..+...+...|++++|..+++++..... ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356778888999999999999999999876200 11233556788888999999999999999988764 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007510 265 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 333 (601)
Q Consensus 265 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 333 (601)
.+....++..+...|...|++++|.+.|++..+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567888999999999999999999988764 2222 3456778888999999999999999988764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHHcCCChhHHHH
Q 007510 334 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------KLKPT-------VSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 334 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~A~~ 395 (601)
+ .+....++..+...|...|++++|.+.|+++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 1223557888899999999999999999988752 11111 1223333444556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 396 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.++..... -+.+..++..+..+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777653 122456788899999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-09 Score=104.50 Aligned_cols=266 Identities=11% Similarity=-0.036 Sum_probs=151.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHH
Q 007510 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~ll~ 242 (601)
.+...|++++|...+++........+.. +++.+...+...|++++|...+.+....... .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 2333444455556666666655554331000 111 122344555
Q ss_pred HHHhcCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 007510 243 ACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--P--DEVFLSALI 311 (601)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~~li 311 (601)
.+...|++++|...++...+. +.. | ...++..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777766655432 111 1 2334556666777777777777777776543221 1 234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKNQGISVG--IISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (601)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777777888888888877654311111 11111 23344667888888888888776533111 1234566777
Q ss_pred HHHcCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 383 ALCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.+...|++++|...+++... .|..++. .++..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888888888887643 2222222 2556667778888999999988887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-09 Score=105.55 Aligned_cols=228 Identities=11% Similarity=-0.052 Sum_probs=158.0
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--C----CCHHHHHH
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVYTI 274 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~~ 274 (601)
..+...|++++|...|++........ ++ ..++..+...|...|+++.|...+++..+... . ....+++.
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34566788888888887765431111 22 34566677778888888888888877654311 1 12456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYSS 344 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 344 (601)
+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888888889999988888876542 1111 124567777888889999999999888776 43 333677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007510 345 LMGACSNAKNWQKALELYEHMKSIKL---KP-TVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~---~~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll 416 (601)
+...|.+.|++++|...+++..+... .| ....+..+...|...++ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 88899999999999999998775311 12 23455666667777787 77777777763 22333 34566788
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 007510 417 VACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=96.39 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333344444444444444444433321 112333334444444444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-09 Score=96.22 Aligned_cols=165 Identities=10% Similarity=0.018 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4466778888999999999999999887765 567889999999999999999999999998877543 67888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (601)
+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875 5578888999999999999999999999988764 45678899999999999999999
Q ss_pred HHHHHHHHh
Q 007510 394 MEVLSDMKS 402 (601)
Q Consensus 394 ~~~~~~m~~ 402 (601)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-09 Score=102.50 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=121.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGAL 168 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~l 168 (601)
....+...|++++|...++.........+.. +++.+...+...|++++|.+.+++.....- ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556778888888877776653222222 455566667777888888777777654210 111 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC--CHHHHHH
Q 007510 169 IDGCAKAGQVAKAFGAYGIMRSK----NVK--PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGA 239 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~ 239 (601)
...+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++.........+ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66677777777777777766532 211 21 234445556666777777777777665442111111 1234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSAL 310 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l 310 (601)
+...+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 5556666666666666666554321111 101111 12233455666666666665544322111 01123344
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 007510 311 IDFAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (601)
...+...|++++|...++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-09 Score=104.95 Aligned_cols=232 Identities=10% Similarity=0.000 Sum_probs=166.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCC---CC-CHHHH
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITI 237 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~-~~~~~ 237 (601)
.....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+.+........ .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556778999999999988865411 122 3456777788888899999888887765421111 11 24467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007510 238 GALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFL 307 (601)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 307 (601)
..+...|...|++++|.+.|++..+. +-+ ....++..+...|...|++++|.+.|++... .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77888899999999999998877653 111 1235678888999999999999999998876 4333 36678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 007510 308 SALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNA 379 (601)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~ 379 (601)
..+...+.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|...++... ..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 888889999999999999999887642 12223456667777778888 777777777632 2222 345667
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 007510 380 LITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
+...|.+.|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=116.39 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...++.+...|.+.|++++|++.|++..+.. +.+..+|+.+...|.+.|++++|++.|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777788888888777777765 556777777777788888888888888777766443 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (601)
+...|++++|++.|++..+.. +-+...++.+..+|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 778888888888887777664 4456777778888888888888888888777653 33467777788888888888888
Q ss_pred HHHHHHHHh
Q 007510 394 MEVLSDMKS 402 (601)
Q Consensus 394 ~~~~~~m~~ 402 (601)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-09 Score=97.54 Aligned_cols=193 Identities=16% Similarity=0.082 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (601)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (601)
|...+......+.+.|++++|...|+...+...+++...+..+..++...|++++|++.|++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445566666666777777777777777666652255566666666677777777777777766665433 4455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 007510 313 FAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALIT 382 (601)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~ 382 (601)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 6666777777777776666553 2233 34555556666666666666666666653 233 345555555
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.|... +...++++...+ ..+...|.... ....+.+++|...+++..+
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 55432 233344444321 22233333222 2233445666666666655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-10 Score=117.47 Aligned_cols=166 Identities=16% Similarity=0.101 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (601)
.+..+|+.|...|.+.|++++|++.|++.++.... +...+..+..+|.+.|++++|+..|++..+.. +-+...|+.+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34678999999999999999999999999987654 67899999999999999999999999999875 45688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCH
Q 007510 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDV 425 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 425 (601)
.+|.+.|++++|.+.|++..+.. +.+...|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999998764 34688999999999999999999999999988 4565 67899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007510 426 EVGLMLLSQAKE 437 (601)
Q Consensus 426 ~~a~~~~~~~~~ 437 (601)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-09 Score=95.66 Aligned_cols=203 Identities=13% Similarity=0.055 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007510 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (601)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (601)
+.|+..+......+...|++++|...|+...... .+++...+..+..++...|++++|...|++..+.+ +.+..+|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHH
Confidence 3467888888999999999999999999988742 12677777779999999999999999999999876 55778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 007510 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSS 344 (601)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 344 (601)
.+...|...|++++|++.|++..+.... +. ..|..+...+...|++++|...++++.+.. +. +...+..
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 9999999999999999999999887543 44 457778888899999999999999998864 33 4567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007510 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (601)
+..+|...| ...++.+...+ ..+...|..... ...+.+++|+..|++..+ +.|+...
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~--l~p~~~~ 215 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT--LSPNRTE 215 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh--cCCCCHH
Confidence 887876544 44556655543 334455544432 345668999999999988 4566543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=103.33 Aligned_cols=230 Identities=12% Similarity=0.013 Sum_probs=154.1
Q ss_pred hccCCHHHHHHHHHHhhhCC-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 007510 208 GQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIA 275 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 275 (601)
...|++++|...+++..... ...+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34566666666665544310 011223567888889999999999999999988764 11 2235678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHH
Q 007510 276 INCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIIS 341 (601)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 341 (601)
...|...|++++|.+.|.+.... ...| ...++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 1112 3557788888999999999999999988765 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHH---HhCC-CCC-C
Q 007510 342 YSSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDM---KSLG-LCP-N 408 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~g-~~p-~ 408 (601)
+..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+....+..+.... ...+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999988752 1112 2234444444444444433333221111 1111 112 2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..++..+...+...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=101.01 Aligned_cols=159 Identities=10% Similarity=0.059 Sum_probs=80.2
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NV-KPDRVVFNAL 203 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~l 203 (601)
...|++++|...|++..+. ..+....++..+...|...|++++|+..|++.... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665541 11223456677777777777777777777776543 11 1123345556
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCC-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C-CCCCHHH
Q 007510 204 ITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEV 271 (601)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 271 (601)
...+...|++++|...+.+..... ...+....++..+...|...|++++|...|++..+. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 666666666666666666654310 000112334444445555555555555555544432 0 0111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~ 296 (601)
+..+...|...|++++|...+++..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444455555544444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-08 Score=96.60 Aligned_cols=61 Identities=7% Similarity=0.032 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
++.+...|.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444455555555555555544443211110 1334444445555555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=82.27 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344444455555555555555554443221 33444444444444455555555555444432 2233444444444555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555444322 22344444444445555555555555544443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.1e-08 Score=80.80 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (601)
.|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35555666666666666666666666543 3355566666666666666666666666665543 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
..|++++|.+.|+++.... +.+...+..+...+...|++++|...+.++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665542 23455555566666666666666666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-08 Score=90.61 Aligned_cols=184 Identities=10% Similarity=0.005 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 007510 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVFL 307 (601)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~ 307 (601)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ..++..+..+|.+.|++++|+..|++..+..+ .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555566667777778888888887777654 333 56677777777777778777777777776533 112 3445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 308 SALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (601)
Q Consensus 308 ~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (601)
..+..++.. .|++++|...|+++.+.. +.+......+.. +..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHHH
Confidence 556666666 777777777777776653 222222222111 111100 00112456
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHC
Q 007510 380 LITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKED 438 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~ 438 (601)
+...|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 778888999999999999998774 344 34667777777765 8889999999998874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-08 Score=95.07 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----
Q 007510 340 ISYSSLMGACSNA-KNWQKALELYEHMKSIKLK-PT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT---- 409 (601)
Q Consensus 340 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 409 (601)
.+++.+...|... |++++|...|++..+.... .+ ..+++.+...|.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 4566777788885 8888888888877643110 11 346788888999999999999999998874322111
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 410 --ITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 410 --~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.+|..+..++...|++++|...+++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1566777788889999999999988876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-07 Score=87.16 Aligned_cols=238 Identities=8% Similarity=0.066 Sum_probs=136.4
Q ss_pred CCCCChhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH--HHHHHHHHHhhCC---CCCHH
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLS 93 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~ 93 (601)
.|+.....-...+..+.+.|.. ++|+++++.++..+ |........-..+....+ .+++++++++.+. +.+..
T Consensus 27 ~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~ 104 (306)
T 3dra_A 27 LYDEDYKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ 104 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH
Confidence 4455555555555555655555 57888888888877 555555554444454555 6777777776543 44555
Q ss_pred HHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHH
Q 007510 94 TFNMLMSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHT 164 (601)
Q Consensus 94 ~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~ 164 (601)
+|+.-...+ ... +++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++++.. +.|..+
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sA 182 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHH
Confidence 666554444 444 56677777777776654 446666666666666666666 6777777776654 446666
Q ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhhhCCCCCCCCHHHH
Q 007510 165 YGALIDGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITI 237 (601)
Q Consensus 165 ~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~ 237 (601)
|+.-...+.+.++ ++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+...+......-..+...+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 6666555555554 566666666665543 3455566655555555555322 3334433332100012344555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 238 GALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
..+...|.+.|+.++|.++++.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5555555555666666666655554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-08 Score=88.08 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
+..++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 4444555555555555555555443 3344455555555555555555555555555432 2234455555544443332
Q ss_pred --hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (601)
Q Consensus 390 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (601)
.+.+...++.... ..|....+.....++...|++++|...|++.++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2223333333321 111122223333344445566666666665554 445544444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.3e-08 Score=91.12 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 200 (601)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ..++..+...|.+.|++++|+..|++...... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45555556666666666677766666666542 112 45566666666666666666666666665421 111 3344
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHhhh
Q 007510 201 NALITACGQ--------SGAVDRAFDVLAEMNA 225 (601)
Q Consensus 201 ~~li~~~~~--------~g~~~~A~~~~~~~~~ 225 (601)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 455555555 6666666666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-08 Score=87.95 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI----------------AINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
.+......+.+.|++++|...|+...+.+ +.+...|.. +...|.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33445556778899999999998888765 445566777 8888888899999999988888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH--
Q 007510 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--WQKALELYEHMKSIKLKPTVS-- 375 (601)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~-- 375 (601)
+. +...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|+ ...+...++... .|+..
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 54 67788888888888899999999988888875 4567778888877766554 344555665554 34433
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
.+..+..++...|++++|...|++..+ +.|+......
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 344455566677888889998888887 5677654443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=88.40 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444433 34444444555555666666666666655544331 1244455555556666666666666666655
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 190 SKNVKP-----DRVVFNALITACG--QSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (601)
+. .| +..+...|..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 33 1333333443321 112 555666666665432 233222223333555556666666555544
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3320 02234444344444444444 555555555554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-07 Score=84.16 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
..+...+...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444444444444444444333321 1223334444444444444444444444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-08 Score=105.76 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=114.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHh
Q 007510 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (601)
Q Consensus 36 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (601)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|++.|+++. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888777 433 4555556666666667777777777776643 4466677777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (601)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777664 3456667777777777777777 77777777654 34566777777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCC
Q 007510 185 YGIMRSKNVKPD-RVVFNALITACGQSGA 212 (601)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 212 (601)
|++..+. .|+ ...+..+..++...+.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777655 333 4455556566554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-06 Score=89.60 Aligned_cols=356 Identities=10% Similarity=0.020 Sum_probs=160.4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHhcCC-hHHHHH
Q 007510 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (601)
Q Consensus 38 ~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~ 113 (601)
.| +++.|+.+|+.+...- |. |+++.+..+|++.. .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666777777666542 21 44677777777643 3677777777776666553 344566
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 114 ~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (601)
+|+..... |. ..+...|...+..+. ..++.+.+.++|+..+......-...|...... .+......+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 66666543 32 235667776666543 235567777888887763111011122211111 111111112222111
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC--C-----hhHHHHHHHHH
Q 007510 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG--Q-----VDRAREVYKMI 260 (601)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~-----~~~a~~~~~~~ 260 (601)
.. +.+..|..++..+.....+ .+...|...+..-...+ - .+.+..+|+++
T Consensus 149 ~~---------------------~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 149 TL---------------------PIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HH---------------------HHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred Hh---------------------HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 10 1112222222221110000 01223333333211110 0 23345556655
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------
Q 007510 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG------ 334 (601)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------ 334 (601)
.... +.++..|...+..+.+.|+.+.|..++++.... + .+...+. .|+.....++. ++.+.+.-
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC-----
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccc
Confidence 5543 444556666666666666666666666666555 1 1221211 11111111111 11111100
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHHHhCCCCC
Q 007510 335 ------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 335 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p 407 (601)
......+|...+..+.+.++.+.|+.+|++. +.. ..+...|......-.. .++.+.|..+|+...+. .+-
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~ 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPD 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTT
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCC
Confidence 0011244555566665666777777777776 221 1233344322222112 22577777777776653 222
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (601)
+...+...+.-..+.|+.+.|+.+|+++.+ ....|...++
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~ 392 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIE 392 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 234445556555667777777777776521 3455555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-08 Score=85.14 Aligned_cols=162 Identities=11% Similarity=0.139 Sum_probs=91.5
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CCHHHHHHHHHH-
Q 007510 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSV- 101 (601)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~- 101 (601)
.......-..+.+.|++++|+..|++..+.. |.+...+..++.++...|++++|+..|+++.. |+...+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHH
Confidence 3344445556667777777777777766655 55666666666666667777777777776542 233322222111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAK 180 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 180 (601)
+...+....|...++...+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112222334556666655543 3345566666666666666666666666666543111 23456666666666666666
Q ss_pred HHHHHHHHH
Q 007510 181 AFGAYGIMR 189 (601)
Q Consensus 181 A~~~~~~m~ 189 (601)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-08 Score=82.54 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=108.2
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007510 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (601)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (601)
++.+..+.|++++|+..|....+. +...+..+...|.+.|++++|.+.|+...+.. +.+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445567788999999998876543 34466778888999999999999999998875 55788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
++|...|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-+...|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988774 44678888999999999988776655 47776653 3456667666666655553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=89.89 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=66.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CCHHHHHHH-HHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNML-MSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~ 109 (601)
..+.+.|++++|+..|++..+.. |.+...+..++..+...|++++|...|+++.. |+....... ...+.+.++.+
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence 33344555555555555555444 34444444444444444555555555554431 222211111 11233344444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (601)
.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..|...|+.++|...|++
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4444444444432 334444444555555555555555555554443200 0133444455555555554444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-07 Score=80.99 Aligned_cols=177 Identities=14% Similarity=0.077 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEIL 327 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~ 327 (601)
+|.+.|++..+.+ ++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666543 45677777777777778888888777777664 45566666666665 5 778888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHH
Q 007510 328 QEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLS 398 (601)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 398 (601)
++..+.+ ++..+..|...|.. .+++++|.+.|++..+.+.. .+..++..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8777665 56667777777766 77888888888887765411 016677777777777 677888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHCCC
Q 007510 399 DMKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 399 ~m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~~g~ 440 (601)
+..+. .++...+..|...|... | ++++|..+|++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87764 23444566666666542 3 78888888888877663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.6e-08 Score=102.80 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=72.5
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 245 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|++.|++..+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 34444455555444444 222 233344444455555555555555555554443322 34444444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007510 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (601)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (601)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544443 2234444455555555555555 55555544432 22344455555555555555555555
Q ss_pred HHHHHh
Q 007510 397 LSDMKS 402 (601)
Q Consensus 397 ~~~m~~ 402 (601)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-06 Score=79.62 Aligned_cols=170 Identities=8% Similarity=-0.006 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQV 178 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 178 (601)
.++|+.+++.++..+ +-+..+|+.--.++...+ +++++++.++.++... +.+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345666666665553 334445555555555555 5666666666655543 33444454443333 333 445
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC------h
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ------V 250 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~ 250 (601)
++++.+++++.+.. +-+..+|+.-.-.+.+.|.++ ++++.++.+... -+.|...|+.-.....+.+. +
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 55555555555442 334444544444444444444 444444444432 12233344333333333333 3
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007510 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (601)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (601)
+++.+.++.+...+ +.|...|+-+...+.+.|+
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 44444444444443 3344444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=88.66 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344455556666666677777777777666553 335566666666677777777777777666544 33433322222
Q ss_pred -HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHh
Q 007510 205 -TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQ 281 (601)
Q Consensus 205 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 281 (601)
..+...++.++|...+++.... -+.+...+..+...+...|++++|...|..+.+.+ +.+ ...+..++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHH
Confidence 2344555566666666665543 13345566666666677777777777777666654 222 4566667777777
Q ss_pred cCCHHHHHHHHHHHH
Q 007510 282 TGDWEFACSVYDDMT 296 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~ 296 (601)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777766666666543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-07 Score=79.62 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 007510 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (601)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 186 (601)
|++.|+...+.| +...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555433 45555556666666666666666666665543 44555555555555 4 5666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHh----cCChhHHHH
Q 007510 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (601)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~a~~ 255 (601)
+..+.| +...+..|...|.. .+++++|++.|++.... .++ ...+..|...|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 665544 44555555555554 55666666666665432 121 3455555555555 555666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 299 (601)
.|++..+. +.+...+..|...|... | ++++|...|++..+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66665554 12233455555555432 2 5566666665555544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.7e-08 Score=83.58 Aligned_cols=159 Identities=12% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHA 317 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~ 317 (601)
.+...+.+.|++++|...|+...+.+ +.+...+..+...+...|++++|...|++...... +...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 34455666677777777776655543 44556666667777777777777777766554432 33222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHH
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEV 396 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 396 (601)
+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22223455566555543 3345566666666666666666666666666543211 234566666666666666666666
Q ss_pred HHHHH
Q 007510 397 LSDMK 401 (601)
Q Consensus 397 ~~~m~ 401 (601)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-07 Score=80.93 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSAL 310 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l 310 (601)
..+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+..+.... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 345556677888888888888888887754211 1356777888888888888888888888776443111 233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH--------------
Q 007510 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VS-------------- 375 (601)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~-------------- 375 (601)
..++...+.. . ...+..+...+...|++++|...|+++.+.. |+ ..
T Consensus 85 g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 85 GLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHH
Confidence 4444332100 0 0001111122223344444544444444321 21 11
Q ss_pred ---HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 007510 376 ---TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 376 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (601)
....+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1124566788889999999999998874 4442 457788889999999999999999887754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-07 Score=80.82 Aligned_cols=200 Identities=10% Similarity=-0.023 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----V 198 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 198 (601)
...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+.. |+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHH
Confidence 4445556667777888888888888877652 22 3466777777888888888888888877652 221 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 278 (601)
.+..+..++...+.. .+. .+..+...+...|+.++|...|+.+.+.. +.+..++.+....
T Consensus 80 a~~~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l 139 (225)
T 2yhc_A 80 VMYMRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH
Confidence 333333444332110 000 01112222233455666666666665543 2222222211110
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHH
Q 007510 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 356 (601)
. .+...+. .....+...|.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.+
T Consensus 140 ~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 140 V----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp H----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred H----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 0 0000000 011233445566666666666666666543111 1234556666666667777
Q ss_pred HHHHHHHHHHhC
Q 007510 357 KALELYEHMKSI 368 (601)
Q Consensus 357 ~A~~~~~~m~~~ 368 (601)
+|.+.++.+...
T Consensus 202 ~A~~~~~~l~~~ 213 (225)
T 2yhc_A 202 QAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 776666666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-07 Score=96.91 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=95.1
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
.|++++|.+.+++.... .+.+...+..+...|.+.|++++|.+.|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 36677777777776543 12345667777777777777777777777777765 555677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (601)
+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 777777665433 56667777777777777777777777776654 34566677777777777 77777777777776
Q ss_pred hCC
Q 007510 367 SIK 369 (601)
Q Consensus 367 ~~~ 369 (601)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-08 Score=83.37 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +.+...|..+...|.+.|+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443332 2233344444444444444444444444443321 1223344444444444444
Q ss_pred hhH
Q 007510 390 LPK 392 (601)
Q Consensus 390 ~~~ 392 (601)
+++
T Consensus 115 ~~~ 117 (150)
T 4ga2_A 115 TDG 117 (150)
T ss_dssp SSS
T ss_pred hHH
Confidence 433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.6e-07 Score=94.09 Aligned_cols=153 Identities=10% Similarity=-0.093 Sum_probs=98.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (601)
.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367777888887776654 455677777888888888888888888887776543 566777777777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHhC
Q 007510 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKSL 403 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 403 (601)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 87777664 4456677777777788888888888877776653 33566777777777777 7777777777777664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-06 Score=77.04 Aligned_cols=126 Identities=15% Similarity=-0.002 Sum_probs=105.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 007510 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (601)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (601)
..++..+...|++++|++.|++..+++...|..+...+...|++++|...|+...+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556677889999999998888888899999999999999999999999988775 557888899999999999999
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 145 AMFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 145 ~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
+|.+.|++..+.. +.+ ..++..+...|.+.|++++|...|++.....
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999988753 222 2678888889999999999999999988763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=7.2e-05 Score=76.45 Aligned_cols=354 Identities=7% Similarity=-0.035 Sum_probs=191.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH-HHHHHHHHhhCC------CCCHHHHHHHHHHHH----hc
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLVP------NPTLSTFNMLMSVCA----SS 105 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~------~~~~~~~~~li~~~~----~~ 105 (601)
-.|+++.+..+|++....- | +..+....+.+..+.++ .+....+|+... ..+...|...+..+. .+
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 4 44455555555544332 234455555421 346688888887654 24
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (601)
++.+.+..+|++.+.. ++. ...|......- +......+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 6788899999999873 322 12222222111 1111122222222111 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcc--CC-----HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 184 AYGIMRSKNVKPDRVVFNALITACGQS--GA-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (601)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (601)
+++.+...--..+...|...+.---.. |- .+.+..+|+++... .+.+...|...+..+.+.|+.+.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222222100001223444333322211 00 23455566665542 233345566666666666777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007510 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (601)
|++.... +.+...|...... .+.+ +. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y~~~-~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYGLV-MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHHHH-TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHHhh-cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 7766665 3333333322111 1111 11 1111110 0001 1245666666666778899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007510 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (601)
.+|..+ +.. ..+..+|......-...+ +.+.|+.+|+...+.. +.+...|...+....+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234445543333333334 6899999999887642 2345566777777788899999999999873
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.....|...+.-=...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2467788888777778999999998988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.7e-07 Score=85.01 Aligned_cols=229 Identities=12% Similarity=-0.009 Sum_probs=141.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
..|++++|.+++++..+... .. ++...+++++|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45778888888887776431 10 01112456666665543 3456777788888888877
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN--VHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
+..+... .+ -..+|+.+..+|.+.|++++|...|++..+. | .+. ..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7654311 11 1346777788888888888888888776542 2 111 3567777777877 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 007510 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
++.... |-.+ ...+++.+...+.+.|++++|+..|++...... +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876543 1100 135677777888888888888888877654211 11122 235666667777778888888888
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 007510 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8877 4211 11 12344455554 56776666553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-05 Score=73.61 Aligned_cols=183 Identities=6% Similarity=-0.020 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (601)
++.+.....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444445556677888888888775 446667777777777777 4888888888888765 457777877777766
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 007510 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (601)
Q Consensus 174 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (601)
+. + ++++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++... -+.|...|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 65 6 7788888888887664 446667665444444433333 566666666543 13355555555555
Q ss_pred HHhcCC-------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007510 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (601)
Q Consensus 244 ~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (601)
+.+.+. ++++.+.+++....+ +.|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 555554 455555665555554 4555566555544444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=84.32 Aligned_cols=199 Identities=13% Similarity=0.044 Sum_probs=109.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (601)
.|++++|.+++++..+.. +.. + +...+++++|...|... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 456677777777665431 110 0 11135666666666543 33566677777777
Q ss_pred HHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 007510 255 EVYKMIHKYNI---KG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--V-IPD--EVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 255 ~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~~g~~~~a~ 324 (601)
..|.+..+... .+ -..+|+.+...|.+.|++++|+..|++..+.- . .+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 77766644310 00 12356667777777777777777777654321 0 111 2345555556656 7777777
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007510 325 EILQEAKNQGIS---V--GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 325 ~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (601)
..|++..+.... + ...+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 766665442100 0 1345566666666777777777766665531 11111 124445555555666677776
Q ss_pred HHHHHHH
Q 007510 395 EVLSDMK 401 (601)
Q Consensus 395 ~~~~~m~ 401 (601)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=68.28 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4456666666777777777777777766553 3456666666677777777777777777766543 3455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (601)
|...|++++|...|+++.... +.+...+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 777777777777776665542 2233444433333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.9e-05 Score=71.21 Aligned_cols=174 Identities=6% Similarity=-0.066 Sum_probs=129.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-C-CHHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 215 (601)
+.+..++|+++++.++... +-+..+|+.--..+...| .++++++.++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445578999999998875 456778888888888888 5999999999999875 55777888766666665 6 7889
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 007510 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (601)
Q Consensus 216 A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 284 (601)
++++++.+... -+.+..+|+--.-.+.+.|.++ ++.+.++++.+.+ +.|..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999998864 2456667766555555555555 8888888888876 6677888888777777775
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (601)
Q Consensus 285 ----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (601)
++++++.+++.....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67788888877776554 66777666555555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=69.47 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...+......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456666777777777777777777777664 4567777777777777777777777777777654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-05 Score=72.03 Aligned_cols=125 Identities=12% Similarity=-0.018 Sum_probs=65.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (601)
.+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...|+...+.+ +.+...|..+...|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 33444455555555555555432 2344455555555555555555555555555543 3445555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 282 TGDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
.|++++|.+.|++..+.... | ....+..+..++...|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666655555543221 0 1134455555555555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-06 Score=71.18 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (601)
..|..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++..+.. +.+..+|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666667777778888888777777654 4456777777777777777777777777776653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHh
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 223 (601)
...|++++|...|++..... +.+...+.. ....+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777776553 223444432 223355566777776666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-05 Score=75.14 Aligned_cols=61 Identities=7% Similarity=-0.094 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKD-DVEVGLMLLSQAK 436 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~~~ 436 (601)
+|..+...|.+.|++++|+..+++..+ .+..+. ..+|..+..++.+.| ++++|.+.+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 444455555555555555555554332 111111 344555555555555 2455555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.1e-06 Score=69.73 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (601)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (601)
..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++....... +...+..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 333444444455555555555444433 333444444444555555555555555444443221 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 007510 318 GKVEAAFEILQEAKN 332 (601)
Q Consensus 318 g~~~~a~~~~~~~~~ 332 (601)
|++++|...++++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-05 Score=74.78 Aligned_cols=60 Identities=7% Similarity=-0.110 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHcCCC-hhHHHHHHHHH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT-VSTMNALITALCDGDQ-LPKTMEVLSDM 400 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m 400 (601)
++..+...|.+.|++++|...+++..+ .+..+. ..+|..+...|.+.|+ +++|.+.+++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 444445555555555555555544432 111111 3445555555555553 35555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=72.95 Aligned_cols=105 Identities=8% Similarity=-0.028 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
.+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 345567777778888888888888888888775 5577888888888888888888888888888764 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
.+|.+.|++++|...|++..+. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 8888888888888888888776 34543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.5e-05 Score=70.67 Aligned_cols=167 Identities=8% Similarity=0.013 Sum_probs=103.4
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHHhhCC---CCCHHHHHHHHHHH
Q 007510 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (601)
Q Consensus 37 ~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (601)
+.|.++ +|+++++.+...+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456555 7888888888877 5555544333333322222 566777666543 45667777766666
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 007510 103 ASSKD--SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (601)
Q Consensus 103 ~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (601)
...++ +++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++.+++.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66663 677777777777765 4566777766666667776 477777777777665 44667777666655544
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
+.++++++.+.+..... +-|...|+-+-..+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34566666666666543 445556654443333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-05 Score=72.73 Aligned_cols=188 Identities=12% Similarity=0.029 Sum_probs=123.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------- 161 (601)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5688888888888888765 4457777766 4555555555555554444433 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-
Q 007510 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (601)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 233 (601)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 123345666777888888888888887765 344445555556777888888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2356667777888888888888888877543213 33466667777788888888888888887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9.8e-06 Score=65.14 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++...... +..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 3333344444444444444444443332 223334444444444444444444444444333211 33333334444444
Q ss_pred cCCHHHHHHHHHHHH
Q 007510 317 AGKVEAAFEILQEAK 331 (601)
Q Consensus 317 ~g~~~~a~~~~~~~~ 331 (601)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-06 Score=66.22 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=37.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (601)
....|.+.|++++|...|++..+.+ +.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|..+..++...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCC
Confidence 3334444444444444444444333 333344444444444444444444444444333222 33334444444444444
Q ss_pred HHHHHHHHHHHHH
Q 007510 320 VEAAFEILQEAKN 332 (601)
Q Consensus 320 ~~~a~~~~~~~~~ 332 (601)
+++|...|++..+
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=83.20 Aligned_cols=95 Identities=14% Similarity=-0.070 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
.+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44444455555555555555555555543 334555555555555555555555555555544322 3445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007510 316 HAGKVEAAFEILQEAKN 332 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~ 332 (601)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.7e-07 Score=84.98 Aligned_cols=97 Identities=8% Similarity=-0.087 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555566666666666666655543 3345555556666666666666666666655443 2345555555556
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007510 172 CAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (601)
|...|++++|...|++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-05 Score=75.12 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--HH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS---VG--II 340 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 340 (601)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566777888888888888777665332111 12333445566778888888888887753211 11 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-H
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSI-KLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 409 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 409 (601)
+++.+...|...|++++|...|++..+. ...|+ ..++..+...|.+.|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999998887621 00122 257788888999999999999999887542 11111 5
Q ss_pred HHHHHHHHHHhhcCCHHHH-HHHHHHHHH
Q 007510 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (601)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a-~~~~~~~~~ 437 (601)
.+|..+...+.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777777653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.6e-05 Score=71.71 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCC-CCC--
Q 007510 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPD-- 233 (601)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-- 233 (601)
..+...+..+...|++++|.+.+.+....... .. ..+..+...+...|++++|...+.......... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667777888888888888777665321 21 122334455666778888888777765421111 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIP- 302 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p- 302 (601)
..+++.+...|...|++++|...|++..+. ..+.+ ..++..+...|.+.|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 336666777777777777777777766521 01111 1466667777777777777777776654321 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007510 303 DEVFLSALIDFAGHAGKVEAA-FEILQEA 330 (601)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 330 (601)
-..+|..+...|...|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134555566666666666666 5545543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=6.6e-06 Score=66.82 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455556666666677777777766666543 3355666666666666666666666666666543 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
|...|++++|...|++..... +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665542 2344455555555544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=9e-06 Score=75.10 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=137.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 007510 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTKKGVIPD--------------- 303 (601)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------- 303 (601)
..++...|.+.|.++.+.+ +.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888776 5667777777 4555555555555544444333 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 007510 304 -------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--V 374 (601)
Q Consensus 304 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 374 (601)
..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445567778899999999998876654 333366666678899999999999998665421 111 2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (601)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (601)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+.+|.+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~~ 249 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHhC
Confidence 3677788899999999999999999875433254 335666777889999999999999999884 455555555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=72.95 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=88.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (601)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777877887777654 4567778888888888888888888888877653 3466777777777 7788887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
|...|+++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887742 234667778888888899999999999888874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-05 Score=65.98 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4445555555666666666666666655543 334555666666666666666666666665554322 44555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
+...|++++|...+++..+.. +.+...+..+..++.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 556666666666665555443 2223344444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-06 Score=67.68 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (601)
+...|..+...+.+.|++++|...|+...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44566666666777777777777777766543 3356666666666767777777777777666543 335566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007510 171 GCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.|.+.|++++|.+.|++....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666777777777777666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-05 Score=65.67 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007510 274 IAINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m 295 (601)
.+...+...|++++|...|++.
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~ 38 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKA 38 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 3333333334444444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=75.79 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=52.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 007510 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKV--EA 322 (601)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 322 (601)
..|++++|...++...+.. +.+...|..+...|...|++++|...|++....... +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3445555555555554443 334455555555555555555555555554443222 33344444444 3344444 44
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|...++++.+.. +.+...+..+...|...|++++|...|++..+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444432 22333444444444444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.1e-06 Score=69.83 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
.|..+..+|.+.|++++|+..|++.
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=74.52 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 412 YSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+..+...+...|++++|.+.+++..
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444455555555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=75.10 Aligned_cols=99 Identities=18% Similarity=0.070 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP- 160 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~- 160 (601)
....+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3445555555555566666666655555431 111 12334555555555666666666555554432 1011
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 161 -NVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 161 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
...++..+...+...|++++|...+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12334555555555566666655555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-06 Score=70.89 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=7.7
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 007510 276 INCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m 295 (601)
...+.+.|++++|...|++.
T Consensus 28 g~~~~~~g~~~~A~~~~~~a 47 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQAL 47 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 33333333333333333333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=72.46 Aligned_cols=98 Identities=9% Similarity=-0.069 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (601)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455556666667777777777777666543 3456666667777777777777777777766531 223455666666
Q ss_pred HHhhcCCHHHHHHHHHHHHH
Q 007510 418 ACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~ 437 (601)
++...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.9e-05 Score=60.77 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
+..|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455566666667777777777777766653 3456666666667777777777777777766553 3345666666667
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777766654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-05 Score=76.51 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (601)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (601)
...+..+...|.+.|++++|+..|++.......... . ..+.+..+- +.....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F-SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 356667777777777777777777776654332110 0 001111000 0013456666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHH
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 427 (601)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766643 345666777777777777777777777776663 33 35566666667777777776
Q ss_pred H-HHHHHHHHH
Q 007510 428 G-LMLLSQAKE 437 (601)
Q Consensus 428 a-~~~~~~~~~ 437 (601)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6 445555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-05 Score=63.46 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...|..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666667777777777777777777664 4466777777777777777777777777777654 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
+...|++++|...|++....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-05 Score=76.48 Aligned_cols=123 Identities=7% Similarity=-0.085 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
...|..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555555566666666666666666655431111 3445555555555555555555555554442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007510 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (601)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (601)
+.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555555554432 22334444444444444444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-05 Score=63.06 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007510 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (601)
...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...|++
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCH
Confidence 333334444444444444333321 1223333344444444444444444444433321 11233333333444444444
Q ss_pred HHHHHHHHHHH
Q 007510 426 EVGLMLLSQAK 436 (601)
Q Consensus 426 ~~a~~~~~~~~ 436 (601)
++|...+++..
T Consensus 89 ~~A~~~~~~al 99 (126)
T 3upv_A 89 ASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=65.15 Aligned_cols=104 Identities=11% Similarity=0.172 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSI 414 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 414 (601)
.+..+...|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666777777777777777766543 3346666677777777777777777777665421 1111 134566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 447 (601)
+..++...|++++|++.|++.++ ..|+..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 66677777777777777777766 33454443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0021 Score=61.14 Aligned_cols=187 Identities=4% Similarity=-0.055 Sum_probs=98.9
Q ss_pred cCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 105 SKDSE-GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 105 ~g~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (601)
.|.++ +|+.+++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-...+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34433 5666666666543 2334445443333333222 455666666666543 445666666665555
Q ss_pred hcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc---
Q 007510 174 KAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (601)
Q Consensus 174 ~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 247 (601)
+.++ +++++..++++.+.. +.|..+|+.-.-.+...|. ++++++.++.+... -+.|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhc
Confidence 5553 566666666666553 3455566555555555555 46666666666543 133444555444444333
Q ss_pred -----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHC
Q 007510 248 -----------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----------GDWEFACSVYDDMTKK 298 (601)
Q Consensus 248 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 298 (601)
+.++++.+.+......+ |.|..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 23556666666666655 55666665444444333 2345555555555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.8e-05 Score=59.33 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333344444444443333322 1223333334444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-05 Score=61.61 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALI 169 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li 169 (601)
...|..+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555555555666666666665555543 3344555555555555555555555555555442 22 345555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 007510 170 DGCAKA-GQVAKAFGAYGIMRSK 191 (601)
Q Consensus 170 ~~~~~~-g~~~~A~~~~~~m~~~ 191 (601)
..+.+. |++++|.+.|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-05 Score=63.11 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (601)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666777777888888888887777764 44677777777788888888888887777665320 111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (601)
.+...+...|++++|++.|++.... .||....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6667777777777777777776654 4555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2e-05 Score=65.46 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
...+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445555666777777777777777777654 4466677777777777777777777777776654 3455666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
|...|++++|...|++....
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.8e-06 Score=74.61 Aligned_cols=29 Identities=10% Similarity=-0.143 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
..+..+...+...|++++|+..|++....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666677777777777766654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-06 Score=73.27 Aligned_cols=142 Identities=8% Similarity=-0.052 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHH
Q 007510 74 QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLIT 135 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~ 135 (601)
.|.++.|.+.++.... .....+..+...+...|++++|...|+...+...... ..++..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3556666655553321 2344566677778888888888888888876431111 156666666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 007510 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (601)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (601)
+|.+.|++++|+..++...+.. +.+..++..+..+|...|++++|+..|++..... +-+...+..+..++...++.++
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766653 3456666666677777777777777777666542 2344555555555554444444
Q ss_pred HH
Q 007510 216 AF 217 (601)
Q Consensus 216 A~ 217 (601)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 33
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=63.48 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTY 165 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~ 165 (601)
...|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777777888888888887777664 44667777777777788888888887777765421 111 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
..+...|...|++++|.+.|++.... .|+...+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 77777777777777777777777665 34554444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=6e-05 Score=61.88 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
.+...|..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...|+...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666666666666666666666553 3345666666666666666666666666666543 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 007510 170 DGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (601)
..|...|++++|...|++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-05 Score=60.61 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILL 416 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll 416 (601)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4455556666666677777777666665543 3345566666666667777777777777666531 22 355666666
Q ss_pred HHHhhc-CCHHHHHHHHHHHHHC
Q 007510 417 VACERK-DDVEVGLMLLSQAKED 438 (601)
Q Consensus 417 ~a~~~~-g~~~~a~~~~~~~~~~ 438 (601)
..+... |++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666677 7777777777666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.12 E-value=4e-05 Score=63.68 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
+..+...+.+.|++++|...|+.....+ +.+...|..+..+|...|++++|+..|++....... +...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344445555666666666666555544 445555555666666666666666666665554332 34445555555566
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007510 317 AGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (601)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.7e-05 Score=63.62 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (601)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788888889999999999999888754 3467888889999999999999999999988742 234778888899
Q ss_pred HHhhcCCHHHHHHHHHHHHHC
Q 007510 418 ACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~ 438 (601)
++...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998874
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00015 Score=60.20 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (601)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777778888888888888888888765 344 5677777777888888888888888877653 3356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
..+...|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777888888888888888877765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=62.80 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=10.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+..+..++...|++++|.+.++++.+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333344444444444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-05 Score=64.56 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (601)
+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666667777777777777777777654 4466677777777777777777777777776654 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007510 171 GCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.4e-05 Score=61.39 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4455566677777777777777777654 4466677777777777777777777777777654 3356677777777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007510 175 AGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (601)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.3e-05 Score=60.69 Aligned_cols=96 Identities=14% Similarity=-0.081 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+...|++++|...|+...+.+ +.+...|..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3444444445555555555555555544443 334444555555555555555555555554443322 34444444445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007510 314 AGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~ 331 (601)
+...|++++|...+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00023 Score=59.05 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (601)
..+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...++...+.. +.+...+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 33444444444444444444444444321 222 2334444444444444444444444444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 274 IAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
.+...+...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444555555555444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.8e-05 Score=75.07 Aligned_cols=146 Identities=11% Similarity=-0.035 Sum_probs=75.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 007510 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (601)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (601)
..+.-...+++.|++++|++.|.++.+......+..... .......+..++ ++..+...|...|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~--------------al~~l~~~y~~~~ 69 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQET--------------SILELGQLYVTMG 69 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHHH--------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHHH--------------HHHHHHHHHHHCC
Confidence 344556778899999999999999988653211110000 000001111222 2456677788888
Q ss_pred ChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcC
Q 007510 107 DSEGAFQVLRLVQEAG-LKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKAG 176 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g 176 (601)
++++|.+.+..+.+.- ..++. .+.+.+-..+...|+.+.|.++++.... .+..+. ..++..|...|...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 8888888777665421 01111 1222222333344566666666655442 111111 234455555555556
Q ss_pred CHHHHHHHHHHH
Q 007510 177 QVAKAFGAYGIM 188 (601)
Q Consensus 177 ~~~~A~~~~~~m 188 (601)
++++|..+++++
T Consensus 150 ~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 150 QYKDSLALINDL 161 (434)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 666665555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=59.04 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (601)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (601)
..+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 33444444555555544444443 334444444444444444544444444444443322 3334444444444444444
Q ss_pred HHHHHHHHHH
Q 007510 322 AAFEILQEAK 331 (601)
Q Consensus 322 ~a~~~~~~~~ 331 (601)
+|...+++..
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=74.72 Aligned_cols=116 Identities=12% Similarity=-0.028 Sum_probs=55.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (601)
.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555555443 334455555555555555555555555555554332 3445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007510 325 EILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (601)
+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554432 1222233333333 455555555555555
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0007 Score=67.97 Aligned_cols=124 Identities=9% Similarity=-0.096 Sum_probs=60.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH
Q 007510 100 SVCASSKDSEGAFQVLRLVQEAGLKAD----------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNV 162 (601)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~ 162 (601)
+.+.+.|++++|++.|..+.+...... ...+..+...|.+.|++++|.+.+..+...- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345667788888888877776432111 1234556666667777777766666654310 01111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 163 ----HTYGALIDGCAKAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 163 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
.+.+.+-..+...|+.+.|..+++.... .+..+. ..++..+...+...|++++|..++.+.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 1122222233334555666555554432 111111 223444455555555555555555444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=73.98 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=82.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (601)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (601)
..+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556788888888888887764 4457788888888888888888888888887764 446777888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 007510 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (601)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 221 (601)
+|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877653 2233444444444 677788888888777
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00042 Score=55.95 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=55.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (601)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+...+.. +.+ ..++..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4445566667777777776666543 2222 355556666666677777777776666543 222 4456666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
|.+.|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00082 Score=54.14 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
+..+...+.+.|++++|...|++...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333444444444444444444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00014 Score=61.28 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-HH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-TI 410 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 410 (601)
++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|...+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445555556666666666666655442100 011 334555666667777777777777665431 11111 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466667777788888888888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00022 Score=60.53 Aligned_cols=62 Identities=10% Similarity=-0.118 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344455555555555555555555554421 12244455555555555555555555555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00036 Score=70.75 Aligned_cols=124 Identities=7% Similarity=-0.079 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
...|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777766431111 3555555566666666666666666655543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007510 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (601)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (601)
+.+..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666655442 223344445555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00016 Score=60.97 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VH 163 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~ 163 (601)
++..+...+...|++++|...++...+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666677777777777665542100 11 13555666666666777777666666543210 001 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
++..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555556666666666666665544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00031 Score=59.67 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (601)
..+......+.+.|++++|+..|+...+. .- +.+...|..+..+|.+.|++++|+..++..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666677778888888888888777654 00 11234566666667777777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.. +.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 345666666777777777777777777766654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=61.93 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007510 352 AKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (601)
.|++++|...|++..+.+ -+.+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766542 11234556667777777777777777777776632 223556666777777777777777
Q ss_pred HHHHHHHHC
Q 007510 430 MLLSQAKED 438 (601)
Q Consensus 430 ~~~~~~~~~ 438 (601)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00052 Score=69.54 Aligned_cols=88 Identities=9% Similarity=-0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (601)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (601)
..|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+...+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555554443 2344455555555555555555555555555432 12233444455555
Q ss_pred HcCCChhHHH
Q 007510 385 CDGDQLPKTM 394 (601)
Q Consensus 385 ~~~g~~~~A~ 394 (601)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00033 Score=68.66 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAG--------------L-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (601)
.|..+...+.+.|++++|+..|+...+.- . +.+..+|..+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 35566667777777777777777766410 0 1122334444444444444444444444444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (601)
+.+..+|..+..+|...|++++|+..|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22333444444444444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00044 Score=67.79 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (601)
+..+...+.+.|++++|...|++..+.. -+.+..+|..+..+|.+.|++++|++.+++.++....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3444555556666666666665554410 0112344555555555555555555555555544322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (601)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (601)
+...+..+..+|...|++++|...|+++.+.. +.+...+..+...+.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554442 22334444444444444443333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.1e-05 Score=59.01 Aligned_cols=86 Identities=12% Similarity=-0.073 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234455666666666666666666666666553 334556666666666666666666
Q ss_pred HHHHHHHhC
Q 007510 183 GAYGIMRSK 191 (601)
Q Consensus 183 ~~~~~m~~~ 191 (601)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0052 Score=63.74 Aligned_cols=171 Identities=6% Similarity=-0.054 Sum_probs=109.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
..++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456777777777765 4456667666666666665 777777777777665 456777777777777777
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc------
Q 007510 177 --QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA------ 247 (601)
Q Consensus 177 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------ 247 (601)
+++++++.++++.+.. +-|..+|+.-...+.+.| ..+++++.++.+... -+.|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcccccc
Confidence 5677888887777664 446677776666666666 677777777776653 234555666555555442
Q ss_pred --------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007510 248 --------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (601)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (601)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33456666666665554 4455566655555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00029 Score=68.24 Aligned_cols=146 Identities=17% Similarity=0.081 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (601)
.+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 4556666677778888888888877654 233221 11111112211111 0 124555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHH-HHhcCChh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQVD 251 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~-~~~~g~~~ 251 (601)
+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.... .|+ ...+..+... ....+..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655542 234555556666666666666666666665432 222 2233333332 22334455
Q ss_pred HHHHHHHHHHhc
Q 007510 252 RAREVYKMIHKY 263 (601)
Q Consensus 252 ~a~~~~~~~~~~ 263 (601)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 555566555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00023 Score=68.90 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
..+..+...+.+.|++++|...|++..... |+... +...++..++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345566667777777777777777766542 22221 112233333322221 13566677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~ 427 (601)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+ +.|+.. .+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776543 33566777777777777777777777777665 345433 33333333 223455666
Q ss_pred HHHHHHHHHH
Q 007510 428 GLMLLSQAKE 437 (601)
Q Consensus 428 a~~~~~~~~~ 437 (601)
+...|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0032 Score=51.62 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHH
Q 007510 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTM 394 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 394 (601)
++++|...|++..+.| .++. . |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555554 2222 1 444455555555566666655553 244555555555555 55566666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCC
Q 007510 395 EVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~g 439 (601)
+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 44445555555555 556666666666665544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0014 Score=54.57 Aligned_cols=94 Identities=11% Similarity=-0.047 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-------
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKA------DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA------- 156 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 156 (601)
+......+.+.|++++|+..|+...+..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445556667777888887777777653220 22 26666666666667777666666666654
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 157 GIEPNVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 157 g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
. +-+...| .....++...|++++|+..|++..
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2234455 566666666666666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0073 Score=62.65 Aligned_cols=171 Identities=8% Similarity=-0.040 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 318 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 318 (601)
.++|.+.++.+...+ +.+..+|+.--..+...|+ ++++++.++.+.+...+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456788888887776 5566777766666666666 78888888888887665 6777777777777778
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---------
Q 007510 319 -KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDG--------- 387 (601)
Q Consensus 319 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 387 (601)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++.+.. +-|..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6688888888888876 456777777777777777 7888888888887765 45677787766665542
Q ss_pred -----CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHH
Q 007510 388 -----DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (601)
Q Consensus 388 -----g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 426 (601)
+.++++++.+.+.... .| |...|.-+-..+.+.+..+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4568888888887773 45 4566777666666666633
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0038 Score=51.12 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKAL 359 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 359 (601)
++++|++.|++..+.|. |+.. +...|...+.+++|.+.|++..+.| ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45556666666555552 2222 4444444555566666666666554 45555556666655 56666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 007510 360 ELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 404 (601)
+.|++..+. -+...+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666654 245555566666665 566666666666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0021 Score=53.38 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHH----HHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPT-VSTM----NALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.|+.+..++.+.|++++|+..+++..+. .+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444445555555555555555544442 01233 3455 5666666666666666666666543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=56.55 Aligned_cols=64 Identities=8% Similarity=-0.040 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
...|..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|.+.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666553 335556666666666666666666666666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00034 Score=58.06 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 007510 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCPN-TITYSILLVACE 420 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 420 (601)
.+.+++|.+.++...+.. +.+...|+.+..++.+.++ +++|+..|++.++ +.|+ ...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence 344555555555555433 2345555555555554444 3477777777766 4454 456777777776
Q ss_pred hc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 421 RK-----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 421 ~~-----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
.. |++++|.+.|+++++ +.|+...|.--+.+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 65 478888888888887 56776666655555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.002 Score=47.98 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (601)
..|..+...+...|++++|...++...+.. +.+..++..+..++.+.|++++|.+.|++..+.. +.+..++..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344455555555556666665555555443 3344455555555555555555555555555432 22344444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=67.18 Aligned_cols=124 Identities=7% Similarity=-0.013 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 007510 314 AGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNA 379 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~ 379 (601)
+...|++++|+.++++..+. | .+.-..+++.|..+|...|++++|..++++..+ .|. -|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766542 1 111245677777788888888888877777653 121 122 345777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 380 LITALCDGDQLPKTMEVLSDMKS---LGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~---~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
|...|...|++++|..++++..+ .-+-|| ..+...+-.++...+.+++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888877777543 111233 22344455556667777777777776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00051 Score=56.99 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN----------WQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++..+.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34455555555555443 3344555555555554443 347777777776653 23456677777777665
Q ss_pred -----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 388 -----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 388 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
|++++|++.|++..+ +.|+...|...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 478889999998887 67887766655543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00086 Score=52.28 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444555555555555555555555554421 22344455555555555555555555555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0012 Score=66.77 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m 295 (601)
+++.|...|...|++++|..++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444555555555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0019 Score=50.79 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
|+..|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 3344555555555555555555555555555443 2334455555555555555555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0029 Score=49.73 Aligned_cols=60 Identities=8% Similarity=-0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (601)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (601)
...+..+...|...|++++|+..|++..+.... +...|..+..++...|++++|...|++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444444444444444444444443333221 233333333333334444444443333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0051 Score=45.59 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444433 23344444444444444444444444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0071 Score=46.15 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
...+..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444432 223334444444444444444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.06 Score=51.37 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (601)
+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5678888888777777899999999999998884 78878888888889999999999999988876 56776664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0075 Score=46.02 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
+.+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467788889999999999999999999998875 446778889999999999999999999987753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.028 Score=53.70 Aligned_cols=64 Identities=9% Similarity=-0.070 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34445554444444445555555555555553 24544454445555555555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.062 Score=43.97 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (601)
.+..+++-|.+..+.+ .++..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456677777766655 478888888888888888 5668999999887753 35 234455666688999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
++.++.+++ ++|+..-...|...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999988 67766555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.22 Score=54.30 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 007510 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (601)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (601)
..++..+.+.|..++|.++.+.-. .-.......|+++.|+++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666655442111 1122334566666666664333 2456666666666667
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 290 (601)
|+++.|.+.|..+.. +..+...|...|+.+...++-+.....+- ++.-...|.+.|++++|++
T Consensus 695 ~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp TCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 777777666665531 23344444455555555444444444331 2333334444555555555
Q ss_pred HHHH
Q 007510 291 VYDD 294 (601)
Q Consensus 291 ~~~~ 294 (601)
++.+
T Consensus 758 ~~~~ 761 (814)
T 3mkq_A 758 LLIK 761 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.092 Score=57.26 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=56.5
Q ss_pred hHHHHHHHH-HHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 74 QKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (601)
Q Consensus 74 ~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (601)
.+++++|.+ ++..++. ......+++.+.+.|..+.|+++.+. .. .-.......|++++|.++.+.
T Consensus 612 ~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp TTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTT
T ss_pred hCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHh
Confidence 455666665 4433331 11225556666666777776655421 10 112334567777777776543
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 153 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
+ .+...|..|...+.+.++++.|.+.|.++.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 356777777777778888888877777664
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.019 Score=43.29 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=27.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
.+.+.|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555442 22344 4555555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.022 Score=56.61 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHH
Q 007510 318 GKVEAAFEILQEAKNQ---GISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNALITA 383 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~li~~ 383 (601)
|++++|+.++++..+. -+.| -..+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555665555554331 0111 123455555555555555555555555442 110 111 2334444455
Q ss_pred HHcCCChhHHHHHHHHH
Q 007510 384 LCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m 400 (601)
|...|++++|+.++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.027 Score=55.98 Aligned_cols=60 Identities=7% Similarity=-0.132 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRS-----KN-VKPD-RVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+++.|...|...|++++|+.++++... .| -.|+ ..+++.|...|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444444444444444332 11 0111 223444444455555555544444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.099 Score=38.99 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 125 ADCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 125 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.|...+..+..++...++ .++|..++++.++.. +-++.+...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444433322 455555555555543 334455555555555555666665555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.05 Score=54.07 Aligned_cols=61 Identities=8% Similarity=-0.065 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+++.|...|...|++++|+.++++.++ .| -.|+ ..+++.|...|...|++++|..+++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444444444555555444444322 11 1122 2335555555555666666655555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.073 Score=52.86 Aligned_cols=89 Identities=9% Similarity=-0.076 Sum_probs=40.3
Q ss_pred HhccCCHHHHHHHHHHhhhCCCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--CCCCHHHHHH
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHP-VDPD----HITIGALMKACANAGQVDRAREVYKMIHKY-----N--IKGTPEVYTI 274 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 274 (601)
+.+.|++++|..++++....... +.|+ ..+++.+...|...|++++|..++++.... | .+....+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455566666655555432111 1121 224445555555555555555555544321 1 0111233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007510 275 AINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m 295 (601)
|...|...|++++|+.++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.11 Score=38.80 Aligned_cols=68 Identities=4% Similarity=-0.006 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 89 NPTLSTFNMLMSVCASSKD---SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
+.|+..+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777654444 689999999998875 5578888888899999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.13 Score=38.53 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=36.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
...+.+.|++++|...|+...+.. +.+.. .+..+...|...|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556666777777776666654 44455 66666666667777777777776666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=1.7 Score=39.84 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 007510 250 VDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVE 321 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 321 (601)
...|...+++..+.+ +. +...|..|...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 179 l~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 456667777777654 22 255788888888874 88888888888887765432355666666777664 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHH
Q 007510 322 AAFEILQEAKNQGIS--VGIISYS 343 (601)
Q Consensus 322 ~a~~~~~~~~~~~~~--~~~~~~~ 343 (601)
++.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888877655 5544433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.1 Score=42.73 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHH
Q 007510 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 394 (601)
...+.+-|.+..+.+ +++..+...+..++++.+ +.+++..+|+...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555555 356667667777777777 5557777777777643 23 2445555666777888888888
Q ss_pred HHHHHHHhCCCCCCH
Q 007510 395 EVLSDMKSLGLCPNT 409 (601)
Q Consensus 395 ~~~~~m~~~g~~p~~ 409 (601)
+.++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888777 56643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.84 Score=38.31 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVL 115 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~ 115 (601)
.|..|.....+.|+++-|.+.|
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy 57 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIY 57 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHH
Confidence 3333333333333333333333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.28 Score=44.88 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc-----CCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhc-C
Q 007510 355 WQKALELYEHMKSIKLKPT---VSTMNALITALCD-----GDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERK-D 423 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~-g 423 (601)
...|...+++..+. .|+ ...|..|...|.+ -|+.++|.+.|++.++ +.|+ ..++..+...+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 45667777777664 455 4577788888877 4888888888888877 5563 56677777777774 8
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 007510 424 DVEVGLMLLSQAKEDGVI--PNLVMFKCI 450 (601)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~--p~~~~~~~l 450 (601)
+.+++.+.+++.+..... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888888876655 665555444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.76 E-value=1.6 Score=36.63 Aligned_cols=99 Identities=11% Similarity=0.136 Sum_probs=54.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (601)
...|+++.|.++.+.+. +...|..|.......|+++-|.+.|.... | +..+.-.|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D---~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQH--------S---FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------C---HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhC--------C---HHHHHHHHHHhCCHHH
Confidence 45566666666655441 45566666666666666666666665542 1 2334444555566655
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
-.++-+.....|- ++.-...+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444444431 44444455556666666666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.28 Score=37.32 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.-+..+...+.+.|+++.|...|+...+.. -.+....+..|..+|.+.|++++|+.+++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555443210 012233444444555555555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=1.5 Score=34.66 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=90.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (601)
-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+ -.| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 3466666666666655542 344455555444333443333333333321 111 134666666665
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 007510 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
-+-.+- .+....+..++.+...|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 555442 4556677788889999999999999998644 3578899999999999999999999999999988875
Q ss_pred C
Q 007510 441 I 441 (601)
Q Consensus 441 ~ 441 (601)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.61 Score=35.37 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAG------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (601)
+..|...+.+.+++..|...|+...+.- -.+...++..|..+|.+.|+++.|+..+++...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444433210 012333444444455555555555555544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.46 Score=38.38 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH-HHHHHHHH------HHHcCCChhHHHHHHHHHHhCC
Q 007510 338 GIISYSSLMGACSNAKNW------QKALELYEHMKSIKLKPTV-STMNALIT------ALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~-~~~~~li~------~~~~~g~~~~A~~~~~~m~~~g 404 (601)
|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...|. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555555555 5556666665542 23321 11111111 1223478999999999987643
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (601)
-+- ...|.....--.++|++..|++++.+.+..+..|....-.++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 233 666777777778899999999999999988777655444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.63 E-value=2.1 Score=33.79 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (601)
.....++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444455555566666666666554332 245555555666666666666666666666655553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.83 Score=36.91 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCChhHHHHHHHHHH
Q 007510 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (601)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~ 154 (601)
.+.|..+|-..+...-+.|++ +..+++|++.... ++|+.. .|-.|-- .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356788888888888888888 8888888888764 455421 1111110 1134478888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (601)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (601)
+.. +.=...|......=.+.|++..|.+++.+....+..|
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 652 2226667777777778888899998888888776444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.83 Score=35.87 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHH
Q 007510 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEV 427 (601)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~ 427 (601)
..+..+.+-|......| .++..+-..+..++.+.....+ ++.+++++.+.+ .| + ....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555554433 3566666666667777666555 677777766542 23 1 2223345556777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 007510 428 GLMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~l 450 (601)
|++.++.+++ ++|+..-...|
T Consensus 93 A~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHH
Confidence 7777777776 45554333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.52 Score=36.99 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhH
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPK 392 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~ 392 (601)
..+..+.+-|......| .++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555555544 3666666677777877776555 778888777643 22 22334456678888888888
Q ss_pred HHHHHHHHHhCCCCCCH
Q 007510 393 TMEVLSDMKSLGLCPNT 409 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~ 409 (601)
|.+.++.+++ +.|+.
T Consensus 93 A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHH--hCCCC
Confidence 8888888887 56653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.30 E-value=5.3 Score=29.63 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
+.-+..+-++.+....+.|++....+.++||.+.+++..|.++|+-++.. ..+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 45567777888888889999999999999999999999999999988743 223355788887654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.43 E-value=21 Score=35.31 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=49.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCC----HHHH
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVY 272 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~ 272 (601)
.|...+-..|++.+|.+++.++..+..+..+. ...+...++.|...+++..|..++.++... ...++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 45566666677777777766665432222111 223444556666667777776666655321 11111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~ 296 (601)
..++..+...+++.+|.+.|.+..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555566666666666555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.33 E-value=32 Score=37.35 Aligned_cols=309 Identities=9% Similarity=0.029 Sum_probs=167.1
Q ss_pred HHHHHHHHhcCChHHH-HHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 007510 96 NMLMSVCASSKDSEGA-FQV-LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDG 171 (601)
Q Consensus 96 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~ 171 (601)
.++.+++...|--... +.. .+++.+. .+....-...--+....|+.++++.+++.....+ -.+....-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3566777777754332 222 2345443 2222222233344567888888988888766421 12223344445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhhhCCCCCCCCHHHHH--HHH
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNV-------KPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIG--ALM 241 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~--~ll 241 (601)
....|..+++..++.......- .+....-..+.-+++-.|. -+++.+.+..+.... .+...... ++.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALG 497 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMG 497 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHh
Confidence 6667766678877766554310 0111122233333333343 245566665555421 11111122 233
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHh
Q 007510 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI--NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAGH 316 (601)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~ 316 (601)
..+.-.|+.+....++..+.+.. +..+...+. -++...|+.+.+..+.+.+.... .|. .-|. ++.-+|+.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaG 572 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTT
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcC
Confidence 33456677777778877766532 223333333 34447788888888888877641 222 2232 23346677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHH
Q 007510 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTME 395 (601)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~ 395 (601)
.|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 888877777888887653 2333333333334455677777788887776644 45555555666666666665 57888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 396 VLSDMKSLGLCPNTITYSILLVAC 419 (601)
Q Consensus 396 ~~~~m~~~g~~p~~~t~~~ll~a~ 419 (601)
++..+.. .+|..+-..-+.++
T Consensus 651 ~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 651 VLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHcc---CCCHHHHHHHHHHH
Confidence 8888874 45555443333333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=2 Score=41.77 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHH---HhcCChHHHHHHHHHHHH
Q 007510 91 TLSTFNMLMSVC---ASSKDSEGAFQVLRLVQE 120 (601)
Q Consensus 91 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~ 120 (601)
|...|..++... ...|+.+.|...++....
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~ 143 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALR 143 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444555555432 235788888888887765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.38 E-value=2.7 Score=40.91 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNA 202 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 202 (601)
+...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|++... .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34456777778888888888877776653 55777888888888888888888888877643 488888776543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.26 E-value=6.2 Score=41.77 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.+...|+++.|+++-++....- +.+..+|..|..+|.+.|+++.|+-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788888888888877663 5567788888888888888888888887764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.28 E-value=9.6 Score=29.98 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
+.-+..+-++.+...++.|++......+.+|.+.+|+..|.++|+-++.. ..+...+|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 34456666777777889999999999999999999999999999988743 334455788887654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.10 E-value=3.1 Score=44.05 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
.+.+...|+++.|+++-++..... +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667899999999999988753 3457899999999999999999999998873
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.04 E-value=6.3 Score=29.08 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 456777777777776552 22222223345667788888887776665 678877777755 4667777777777
Q ss_pred HHHHhCCCCCCHHHHH
Q 007510 186 GIMRSKNVKPDRVVFN 201 (601)
Q Consensus 186 ~~m~~~g~~p~~~~~~ 201 (601)
.++..+| .|....|.
T Consensus 93 ~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHTTCC-CHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777666 44444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.11 E-value=9.5 Score=28.11 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=61.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
-..+.++|-.+-+.+...+. ...+..+-+...-+.|++++|..+.+..+.||...|.++-. .+.|-.+.+..-+.
T Consensus 18 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34578899999999888762 33333222333456689999999999999999999988755 46677777777776
Q ss_pred HHHHcCCCCCHHHH
Q 007510 117 LVQEAGLKADCKLY 130 (601)
Q Consensus 117 ~m~~~g~~~~~~~~ 130 (601)
.+-..| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 776665 4443333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.87 E-value=40 Score=38.00 Aligned_cols=85 Identities=13% Similarity=0.017 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (601)
=|..++..+-+.+.++.+.++-+...+....-+. ..|..+...+...|++++|...+-.+.....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 3667777788888888888777665543221122 25777888888888888888888777655432 44566666
Q ss_pred HHHHhcCCHHH
Q 007510 347 GACSNAKNWQK 357 (601)
Q Consensus 347 ~~~~~~g~~~~ 357 (601)
...+..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 66666665443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.73 E-value=18 Score=40.80 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (601)
..-|..++..+.+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345777888888888888888777666553211121 2577888888888999988888888876533 4567777
Q ss_pred HHHHHhccCCHHHHH
Q 007510 203 LITACGQSGAVDRAF 217 (601)
Q Consensus 203 li~~~~~~g~~~~A~ 217 (601)
|+..++..|..+.-.
T Consensus 977 LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCChhhhh
Confidence 887777777765544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.56 E-value=10 Score=28.00 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=59.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
-..+.++|-.+-+.+...+. ...+..+-+...-+.|++++|..+.+..+.||...|.++-. .+.|-.+.+..-+.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34578899999998888762 33333222333456688999999999999999999988765 35566666666666
Q ss_pred HHHHcCCCCCHHH
Q 007510 117 LVQEAGLKADCKL 129 (601)
Q Consensus 117 ~m~~~g~~~~~~~ 129 (601)
.+-..| .|....
T Consensus 94 ~la~sg-~p~~q~ 105 (116)
T 2p58_C 94 RLARSQ-DPRIQT 105 (116)
T ss_dssp HHTTCC-CHHHHH
T ss_pred HHHhCC-CHHHHH
Confidence 666555 343333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.00 E-value=8.4 Score=30.35 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
.|+..+--.+..++.+.... .+++.+++++.+.+ | . ...+-.+.-++.+.|++++|+++.+.+.+ ++|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 45555555555666655543 35677777766543 3 2 33344555577777777777777777776 566655
Q ss_pred HHHHHHHH
Q 007510 446 MFKCIIGM 453 (601)
Q Consensus 446 ~~~~li~~ 453 (601)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.83 E-value=5.9 Score=29.17 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=54.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 456777777777776542 22222223345567788888877766655 677777777654 4677777777777
Q ss_pred HHHHhCCCCCCHHHHH
Q 007510 186 GIMRSKNVKPDRVVFN 201 (601)
Q Consensus 186 ~~m~~~g~~p~~~~~~ 201 (601)
.++..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777666 44444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.28 E-value=17 Score=28.70 Aligned_cols=75 Identities=7% Similarity=-0.038 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007510 334 GISVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (601)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (601)
+-.|++.+--.+..++.+..+. .+++.+++.+.+.+.......+-.|.-|+.+.|++++|.+..+.+.+ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3356666666677777776654 46777887777654212345566677788888888888888888877 566643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.95 E-value=20 Score=28.68 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP-NT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
.|+..+--.+..++.+..+. .+++.+++++.+.+ | +. ...-.+.-++.+.|++++|+++.+.+++ ++|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 45555555555666665543 35666666666532 3 22 2233444567777777777777777777 556554
Q ss_pred HHHHHH
Q 007510 446 MFKCII 451 (601)
Q Consensus 446 ~~~~li 451 (601)
-...|-
T Consensus 112 QA~~Lk 117 (144)
T 1y8m_A 112 QVGALK 117 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.26 E-value=48 Score=32.68 Aligned_cols=190 Identities=13% Similarity=0.144 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHhhhC---CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HhcC
Q 007510 211 GAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTG 283 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 283 (601)
|++++|++.+-.+.+. .............++..|...|+++...+.+..+.+.... .......++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 5677777766555432 1223344556667777777777777776666555443211 122223333222 1222
Q ss_pred CHHHHHH--HHHHHH--HCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHH
Q 007510 284 DWEFACS--VYDDMT--KKG-VIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACS 350 (601)
Q Consensus 284 ~~~~a~~--~~~~m~--~~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~ 350 (601)
..+...+ +..... ..| +-. .......|...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221111 111000 001 111 0112234555566666666666666665432 11111 234455556666
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 351 NAKNWQKALELYEHMKS----IKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 351 ~~g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
..+++.+|..++.++.. ....|+ ...+..++..+...+++.+|.+.|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666666665431 111121 1234445555555666666666555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 601 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.13 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.06 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.04 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.95 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.75 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.7 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.65 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.34 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.29 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.5 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.17 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.8 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.11 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.09 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.64 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-20 Score=186.57 Aligned_cols=378 Identities=13% Similarity=0.052 Sum_probs=264.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (601)
+...+.|++++|++.|+++.+.. |.+...+..++.++...|++++|+..|+++. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 45568888999999988888776 6666666677777777788888888887643 445667777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
+|...+....+.. +.+..............+....+........... .................+....+...+.+..
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 8888888777765 4455555555555566666666666555554443 3344455555666667777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 007510 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (601)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (601)
... +.+...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++.....+ +.+.
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 542 3345666677777777888888888877766531 2345567777777778888888888887777765 4556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
..+..+...+.+.|++++|...|++..+.... +..++..+...+...|++++|...++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 67777777778888888888888877766443 56677777777777788888888877776654 55667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDD 424 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 424 (601)
.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|...|++..+ +.|+ ...|..+..++.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 78888888888887776643 23466677777777788888888888877776 4554 5567777777766664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.2e-20 Score=180.10 Aligned_cols=372 Identities=13% Similarity=0.082 Sum_probs=303.7
Q ss_pred HHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (601)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (601)
....+.|++++|++.|+++. +.++..+..+...+.+.|++++|...++...+.. +.+..++..+..+|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34456788999999998753 4567889999999999999999999999998875 5578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.+.+....+.. +.+...+..........+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999988765 4455566666666666677666666666555443 33444555566667778888888888877765
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (601)
. .+.+...+..+...+...|+.++|...++...+.+ +.+..+|..+...+...|++++|...+.+....+.. +..
T Consensus 164 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 238 (388)
T d1w3ba_ 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred c---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH
Confidence 3 23456677888889999999999999999998876 667889999999999999999999999998887654 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
.+..+...+.+.|++++|...++++.+.. +-+..++..+...|...|++++|.+.++...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 88888899999999999999999998875 4567889999999999999999999999887654 567788999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 454 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~ 454 (601)
+.|++++|+..|++..+ +.|+ ..++..+..++...|++++|...|+++++ +.|+ ...|..+..+|
T Consensus 317 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 99999999999999887 4554 67788899999999999999999999987 5565 44555555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.6e-13 Score=127.49 Aligned_cols=271 Identities=12% Similarity=-0.010 Sum_probs=152.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
.....+.+.|++++|...|+.+.+.. +.+..+|..+..++...|++++|...|++..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556788899999999999988875 4468888889999999999999999999988764 446778888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (601)
++++|.+.+++.... .|+............. ..+.......+..+...+...++...
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG---------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh---------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 999999999888765 2322111000000000 00000000011112223334444555
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 257 YKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 257 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
|....+.+. ..+..++..+...+...|++++|+..|++....... +...|..+...+...|++++|.+.+++..+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 544443321 123444555555555555555555555555444322 34455555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007510 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKS----------IKLKPTVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (601)
+-+..++..+..+|.+.|++++|++.|++..+ .........|..+-.++...|+.+.+.
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22344555555555555555555555555443 011223344555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=7.7e-12 Score=119.36 Aligned_cols=272 Identities=11% Similarity=0.027 Sum_probs=200.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 007510 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (601)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (601)
.....+.+.|++++|...|+++++.. +.+..+|..+...|...|++++|...|.+..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556789999999999999998874 4467889999999999999999999999988764 446778888888999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 212 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
++++|.+.++..... .|+............. ..+.......+..+...+.+.+|.+.
T Consensus 102 ~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 102 LQRQACEILRDWLRY----TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp CHHHHHHHHHHHHHT----STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh----ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 999999999988753 3332111000000000 00001111222334455677888888
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007510 292 YDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (601)
Q Consensus 292 ~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (601)
|.+...... .++...+..+...+...|++++|...+++..... +-+...|..+...|.+.|++++|.+.|++..+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 888776543 3467788888899999999999999999988775 4568889999999999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 007510 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKS----------LGLCPNTITYSILLVACERKDDVEVGLM 430 (601)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (601)
+-+..+|..+..+|.+.|++++|+..|++.++ .........|..+-.++...|+.+....
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34678899999999999999999999998765 1123345567777777777777665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.8e-08 Score=94.77 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
..++.+...+.+.+.+++|+++++.+++.+ +-+...|+....++...| ++++|+..++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 356666666777778888888888888765 446667777777777765 4788888888877664 4467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC--
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-- 249 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-- 249 (601)
+.+.|++++|+..|+++.+.. +.+...|..+...+...|++++|++.++.+.... +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccc
Confidence 888888888888888877653 4467777777777777888888888887777531 2345566666555555554
Q ss_pred ----hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007510 250 ----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (601)
Q Consensus 250 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 314 (601)
+++|...+....+.+ +.+..+|+.+...+... ..+++.+.++...+....+ +...+..+...|
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 456777777766665 55666776665554433 3456666666655433222 334444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.5e-08 Score=92.67 Aligned_cols=216 Identities=8% Similarity=-0.007 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (601)
...++.+...+.+.+.+++|+++++++++.. +-+..+|+.....+...| ++++|+..+++..... +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3466667777888889999999999998875 456778888888888776 4899999999887764 456788888888
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-
Q 007510 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD- 284 (601)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 284 (601)
.+.+.|++++|+..++.+... -+.+...|..+...+.+.|++++|...++.+.+.+ +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 888899999999999988764 24457788888888999999999999999998876 6677788877776666554
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 007510 285 -----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACS 350 (601)
Q Consensus 285 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 350 (601)
+++|++.+.+..+..+. +...|..+...+.. ...+++.+.++...+.... .+...+..++..|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 57788888877776543 66666666555443 3456666777666554322 23445555555553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=3.1e-08 Score=92.93 Aligned_cols=187 Identities=15% Similarity=0.112 Sum_probs=146.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (601)
..++|..+|++..+...+.+...|...+..+...|+++.|..+|+++...........|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888887655667778888888899999999999999998876554445678888888889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CC
Q 007510 329 EAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LC 406 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 406 (601)
.+.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.++|..+|++..+.. ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 988775 3344445444433 345688999999999988753 4567889999999999999999999999987643 34
Q ss_pred CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 407 PN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 407 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 45788888877888999999999988765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.1e-07 Score=88.73 Aligned_cols=268 Identities=11% Similarity=-0.008 Sum_probs=154.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 007510 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (601)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li 169 (601)
...+...|++++|+++++...+.....+ ..++..+..+|...|++++|.+.|++..+... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3456677888888888877776532211 23566667777788888888888877654210 111 23455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC--CCCCHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRS----KNVKPD---RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGAL 240 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l 240 (601)
..+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+......... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677777888888777766542 111111 123444556667777777777777665542111 11223344455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 007510 241 MKACANAGQVDRAREVYKMIHKYN--IKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li 311 (601)
...+...++...+...+....... .... ...+..+...+...|++++|...+.......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 556666777777776665543321 1111 2234555666667777777777776654432221 223445556
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
..+...|++++|...++.+.. .+..| ...++..+...|.+.|++++|.+.+++..
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777777777777766542 22222 23455666667777777777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=8.4e-08 Score=89.89 Aligned_cols=150 Identities=10% Similarity=0.090 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++...........|...+..+.+.|+.+.|.++|..+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555554433233444455555555555555555555555554321122334445555555555555555555554
Q ss_pred hhCCCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 224 NAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
.... +.+...|...... +...|+.+.|..+|+.+.+.. +.++..|...+..+.+.|+++.|..+|++...
T Consensus 161 l~~~---~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 161 REDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HTST---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhC---CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4321 1112222222111 122344455555555444432 33344444444444444555555555544443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=9.4e-08 Score=91.21 Aligned_cols=267 Identities=10% Similarity=-0.026 Sum_probs=152.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALM 241 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~ll 241 (601)
..+...|++++|++++++........+ ...++.+...+...|++++|...+++....... .++ ...+..+.
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHH
Confidence 334455555555555555544311101 123334444555555555555555544321000 011 12334444
Q ss_pred HHHHhcCChhHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 007510 242 KACANAGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV----IPDEVFLSAL 310 (601)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l 310 (601)
..+...|++..+...+...... .... ....+..+...+...|+++.+...+........ ......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5556666666666666554321 1111 122445566667777777777777776654321 1223444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 007510 311 IDFAGHAGKVEAAFEILQEAKNQ----GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALI 381 (601)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li 381 (601)
...+...++...+...+...... +..+ ....+..+...+...|++++|...++...+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55666777777777776655432 1111 12345556667788888888888888776533222 234566677
Q ss_pred HHHHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 382 TALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..+...|++++|...+++... .+..|+ ..++..+...+.+.|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888999999988887653 344444 34577778888999999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=5.8e-09 Score=95.27 Aligned_cols=199 Identities=10% Similarity=-0.048 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
..+|..+...|.+.|++++|...|+...+.. +.+..+|+.+..+|.+.|++++|++.|++..+.. +.+..++..+...
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 3466677778888888999988888888765 5567888888888888899999999888888764 3456778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC--
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-- 249 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-- 249 (601)
|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .++...+. ++..+.....
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhh-HHHHHHHHHHHH
Confidence 888899999988888887663 334444444444445555555555554444432 11111121 2222211111
Q ss_pred --hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 250 --VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
.+.+...+....... +....+|..+...|...|++++|.+.|++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 189 TLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111111111111110 1112456667777777788888888887777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=6e-09 Score=99.32 Aligned_cols=249 Identities=7% Similarity=-0.057 Sum_probs=115.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA----------KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
+..++|+++++...+.. |-+...|+..-..+. ..|++++|+.+++...+.. +.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 33467777777666653 223334433222221 2233455666666655543 33555555555555544
Q ss_pred CC--HHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 176 GQ--VAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (601)
Q Consensus 176 g~--~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (601)
++ +++|...+.++.+.. +++...+.. ....+...+..++|+..++.+.... +.+...|..+...+.+.|++++
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHH
Confidence 43 556666666655542 233444332 2244445566666666665554431 2334455555555555555554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
|...+....+.. .....+. ..+...+..+++...+.....
T Consensus 197 A~~~~~~~~~~~-----~~~~~~~-----------------------------------~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 197 SGPQGRLPENVL-----LKELELV-----------------------------------QNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp SSSCCSSCHHHH-----HHHHHHH-----------------------------------HHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHhHHhH-----HHHHHHH-----------------------------------HHHHHhcchhHHHHHHHHHHH
Confidence 443332222211 0001111 112223333444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 333 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.. +++...+..+...+...|+.++|...+.+..+.. +.+..+|..+...|.+.|++++|++.+++..+
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 2333334444445555555555555555554322 11234445555555556666666666665555
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=6.9e-09 Score=98.85 Aligned_cols=229 Identities=8% Similarity=-0.091 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHH
Q 007510 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--VDRAREVYKMIHKYNIKGTPEVYT-IAINCCSQTGDWEF 287 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~ 287 (601)
|++++|+.+++..... -+.+...|..+..++...++ .++|...+..+.+.+ +++...+. .....+...+.+++
T Consensus 87 ~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 87 ALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3456666666666543 12344455555555555443 567777777776665 44445443 34456666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|+..++.....++. +...|..+...+.+.|++++|...+....+.. | . ...+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L--K-ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H--H-HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H--H-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 77777777766554 66677777777777777776655544333321 1 1 11233344556667778888887776
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 007510 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-V 445 (601)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~ 445 (601)
.. +++...+..+...+...|+.++|...+.+..+. .| +..++..+..++...|++++|.+.++++.+ ++|+. .
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~ 311 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 311 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHH
Confidence 54 345556677778888889999999999988763 34 356678888999999999999999999998 56753 3
Q ss_pred HHHHHHHHH
Q 007510 446 MFKCIIGMC 454 (601)
Q Consensus 446 ~~~~li~~~ 454 (601)
.|+.|-..+
T Consensus 312 y~~~L~~~~ 320 (334)
T d1dcea1 312 YLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455554433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=2.6e-07 Score=83.87 Aligned_cols=195 Identities=14% Similarity=0.000 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
++..+...|.+.|++++|...|++..+.+ +.++.+|+.+..+|.+.|++++|++.|++..+.... +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 45555667777777777777777777765 556777777777777777777777777777765443 4456666677777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh----h
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL----P 391 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~ 391 (601)
..|++++|...++...+.. +.+......+...+.+.+..+.+..+........ ++...++ ++..+...... +
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777776654 2334443334444455555555545444444322 2211222 22222211111 1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 392 KTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 392 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.+...+..... ..|+ ..+|..+...+...|++++|...|++.+..
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11111111111 1122 235666777788888888888888888763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3.6e-06 Score=72.03 Aligned_cols=121 Identities=15% Similarity=0.008 Sum_probs=98.5
Q ss_pred HhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007510 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (601)
....|+++.|++.|.++.++++.+|..+..++...|++++|++.|++.++.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 15 ~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3456889999999999888898899999999999999999999999999876 557888999999999999999999999
Q ss_pred HHHHHCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 151 HEMVNAGI--------------EPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 151 ~~m~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
++.....- .++ ..++..+..++.+.|++++|.+.|.......
T Consensus 94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 98775310 001 2455667778888899999998888887653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=6.1e-06 Score=76.00 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 007510 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA- 121 (601)
Q Consensus 43 ~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 121 (601)
++-+++.+..+.+. ....+...+. ....+++++|.++|.+ ....|...+++++|.+.|.+..+.
T Consensus 3 ~~~~~l~~aek~~~--~~~~~~~~~~--~~~~~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 3 DPVELLKRAEKKGV--PSSGFMKLFS--GSDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CHHHHHHHHHHHSS--CCCTHHHHHS--CCSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--cchhHHHHhc--CCccccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34556666655542 1222222111 1334567888777554 466788899999999999887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh-
Q 007510 122 ---GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRS- 190 (601)
Q Consensus 122 ---g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~- 190 (601)
+-++ -..+|..+..+|.+.|++++|.+.++...+. |- .....++..+...|.. .|++++|+..|++..+
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 2112 2357888889999999999999988876542 10 1113455566666644 5889999988887653
Q ss_pred ---CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC---CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 191 ---KNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDH-ITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 191 ---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
.+.++. ..++..+...+...|++++|...|+++........ ... ..+...+..+...|+++.|...++...+
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 121111 23466677788888888888888888765321111 010 1223344455667778888877777665
Q ss_pred cCCCC----CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 007510 263 YNIKG----TPEVYTIAINCCSQ--TGDWEFACSVYDDMT 296 (601)
Q Consensus 263 ~~~~~----~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 296 (601)
..... .......++.++.. .+.+++|+..|+++.
T Consensus 228 ~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 43111 11233445555543 234666666665433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.4e-05 Score=61.91 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (601)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (601)
...+.+.|++++|+..|+..++.. +.+...|..+..+|.+.|++++|+..++...+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 445666677777777777776654 4466667777777777777777777777766654 45666677777777777777
Q ss_pred HHHHHHHHHHHhC
Q 007510 179 AKAFGAYGIMRSK 191 (601)
Q Consensus 179 ~~A~~~~~~m~~~ 191 (601)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.5e-05 Score=66.55 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=53.2
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007510 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (601)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (601)
.+...|++++|++.|.++. +|+..+|..+...|...|++++|.+.|++..+.+ +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 3455666666666665431 3455556666666666666666666666666665 45566666666666666666
Q ss_pred HHHHHHHHHHHH
Q 007510 286 EFACSVYDDMTK 297 (601)
Q Consensus 286 ~~a~~~~~~m~~ 297 (601)
++|++.|++...
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=2.1e-05 Score=72.22 Aligned_cols=194 Identities=10% Similarity=0.058 Sum_probs=116.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 007510 241 MKACANAGQVDRAREVYKMIHKY----NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSAL 310 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~l 310 (601)
...|...|++++|.+.|.+..+. +- +....+|..+..+|.+.|++++|.+.+++.... |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45677888888888888776553 11 111356788888888888888888888875432 11 0112345555
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 007510 311 IDFAG-HAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-----V-STMN 378 (601)
Q Consensus 311 i~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~-~~~~ 378 (601)
...|. ..|++++|...+++..+. +.++ ...++..+...|.+.|++++|.+.|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55554 358888888888776532 2111 134566777788888888888888888765421111 1 1233
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhh--cCCHHHHHHHHHHHH
Q 007510 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN------TITYSILLVACER--KDDVEVGLMLLSQAK 436 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~--~g~~~~a~~~~~~~~ 436 (601)
.++..+...|+++.|...+++..+. .|+ ......++.++.. .+.+++|...|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4445566678888888888877663 222 2234455555544 344666666665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.6e-05 Score=61.64 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=37.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (601)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (601)
+.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|+..+....+.+.. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 344444444444444444433 333444444444444444444444444444443322 333444444444444444444
Q ss_pred HHHHHHHHH
Q 007510 324 FEILQEAKN 332 (601)
Q Consensus 324 ~~~~~~~~~ 332 (601)
+..|+...+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.9e-05 Score=63.92 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=56.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (601)
...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|...|++.++.... +...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 344556666666666666666655 455666666666666666666666666666655433 445666666666666666
Q ss_pred HHHHHHHHHHHHCC
Q 007510 321 EAAFEILQEAKNQG 334 (601)
Q Consensus 321 ~~a~~~~~~~~~~~ 334 (601)
++|...+++..+..
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.6e-05 Score=64.19 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=71.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (601)
....+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++.++.. +.+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3456778888888888888888775 5577788888888888888888888888887764 4456778888888888888
Q ss_pred HHHHHHHHHHHHhC
Q 007510 178 VAKAFGAYGIMRSK 191 (601)
Q Consensus 178 ~~~A~~~~~~m~~~ 191 (601)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=6e-06 Score=64.36 Aligned_cols=107 Identities=14% Similarity=0.037 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNT-ITYSILLVA 418 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 418 (601)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667777777777777776654 44566666677777654443 3577777776653322222 255666677
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (601)
|.+.|++++|++.|+++++ +.|+..-...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 7777777777777777776 4566544444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.0018 Score=57.81 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCC
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQ 389 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 389 (601)
.+...+...++...+.| +......+...|.. ..+.++|...|++..+.| ++..+..|...|.+ ..+
T Consensus 160 ~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n 233 (265)
T d1ouva_ 160 KDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRN 233 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCC
T ss_pred cccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccC
Confidence 34444555555444443 33333344434433 345666666666665543 34444445555543 235
Q ss_pred hhHHHHHHHHHHhCC
Q 007510 390 LPKTMEVLSDMKSLG 404 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g 404 (601)
.++|.+.|++..+.|
T Consensus 234 ~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 234 EKQAIENFKKGCKLG 248 (265)
T ss_dssp STTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc
Confidence 556666666655544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.0019 Score=57.57 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 007510 270 EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIIS 341 (601)
Q Consensus 270 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (601)
..+..|...|.. ..+...+...++...+.| +......+...|.. ..+.+.|...|....+.| ++..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 444444444443 234445555555554443 33333334333333 356777777777766665 3455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 007510 342 YSSLMGACSN----AKNWQKALELYEHMKSIK 369 (601)
Q Consensus 342 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 369 (601)
+..|..+|.+ ..+.++|.+.|++..+.|
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5556666654 335667777777766544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=1.8e-05 Score=68.04 Aligned_cols=98 Identities=8% Similarity=-0.063 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
|++..+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 344444455555666666666666666655553 3455556666666666666666666666665442 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (601)
.+|.+.|++++|+..|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=2.7e-05 Score=66.96 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (601)
|+...+......|.+.|++++|+..|.+.+...+. +...|..+..+|.+.|++++|+..|....+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 33444444555555555555555555555544332 44555555555555555555555555555433 22344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 347 GACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~ 366 (601)
.+|.+.|++++|...|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.4e-05 Score=62.24 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007510 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNALITA 383 (601)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~ 383 (601)
..+++.+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|+.+|+++.+....|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346667777788888888888888776 5677777788888876554 4468888888776432222 2366778888
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007510 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 413 (601)
|.+.|++++|++.|+++++ +.|+..-..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~ 109 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAK 109 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHH
Confidence 8888888888888888887 567654433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.04 E-value=2.7e-05 Score=59.64 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=59.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (601)
+...+.+.|++++|...|+...+.. +-+..+|..+..++.+.|++++|+..|++..+.. +.+..+|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445666777777777777776654 3356677777777777777777777777766654 3456667777777777777
Q ss_pred HHHHHHHHHHH
Q 007510 178 VAKAFGAYGIM 188 (601)
Q Consensus 178 ~~~A~~~~~~m 188 (601)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0047 Score=56.51 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
+|..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3444444455555566666666666654431 445555556666666665555433 1445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (601)
..+.+......| .+.......+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHh
Confidence 666655544332 1222222334444455666666666666666666654321 133444555566666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.99 E-value=3.8e-05 Score=58.76 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=33.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (601)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (601)
+.+.|++++|...|++..+.+ +.+..+|..+...+.+.|++++|+..|++..+..+. +...+..+...|...|+.++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHH
Confidence 334444444444444444333 223344444444444444444444444443333222 233333333344444444444
Q ss_pred HHHHH
Q 007510 324 FEILQ 328 (601)
Q Consensus 324 ~~~~~ 328 (601)
.+.++
T Consensus 104 ~~~l~ 108 (112)
T d1hxia_ 104 LASLR 108 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.0065 Score=55.55 Aligned_cols=282 Identities=9% Similarity=0.040 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (601)
.||..--..+.+.|.+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45666666778888899999999999987652 7788888999999999998887653 56789999
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007510 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (601)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (601)
..++.+......+. +.. .....+......++..|-..|.+++...+++...... +.+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la~-----i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLAQ-----MCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHHH-----HTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHHH-----HHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 99998877765432 111 1233455566788999999999999999999876543 567788999999998875
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
. ++..+.++.. .+ .-| ...++..|.+.+-++++.-++..+... -+++..++.+..+..++....+
T Consensus 148 ~-~kl~e~l~~~--s~-~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~--------~~A~~~~i~~~~~~~~~~~f~e 212 (336)
T d1b89a_ 148 P-QKMREHLELF--WS-RVN---IPKVLRAAEQAHLWAELVFLYDKYEEY--------DNAIITMMNHPTDAWKEGQFKD 212 (336)
T ss_dssp H-HHHHHHHHHH--ST-TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCH--------HHHHHHHHHSTTTTCCHHHHHH
T ss_pred h-HHHHHHHHhc--cc-cCC---HHHHHHHHHHcCChHHHHHHHHhcCCH--------HHHHHHHHHcchhhhhHHHHHH
Confidence 3 3333333322 11 112 344556666666666655555443111 0111111111111111111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (601)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (601)
-..+ ..|+..|-..+..|... +++-...++..+... +. . ..++.-+.+.+++.....+++.....| +
T Consensus 213 ~~~k---~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~d--~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~ 279 (336)
T d1b89a_ 213 IITK---VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR-LD--H---TRAVNYFSKVKQLPLVKPYLRSVQNHN---N 279 (336)
T ss_dssp HHHH---CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG-CC--H---HHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred HHHc---cCChHHHHHHHHHHHHc-CHHHHHHHHHHhccC-CC--H---HHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence 1222 12333344444444432 233333333333221 11 1 234444556666666777777665544 3
Q ss_pred HHHHHHHHHHHHh
Q 007510 444 LVMFKCIIGMCSR 456 (601)
Q Consensus 444 ~~~~~~li~~~~~ 456 (601)
..+.++|.+.|..
T Consensus 280 ~~vn~al~~lyie 292 (336)
T d1b89a_ 280 KSVNESLNNLFIT 292 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 4677888887754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=7.5e-06 Score=81.66 Aligned_cols=115 Identities=13% Similarity=-0.025 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (601)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (601)
+...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+.. +.+...|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 34455666666666677766666655544321 12355566666777777777777777777664 445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
.|...|+..+|...|.+..... +|-..++..|...|.+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 7777777777777777776654 45666677776666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.75 E-value=0.00057 Score=55.31 Aligned_cols=76 Identities=20% Similarity=0.083 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
.+|+.+..+|.+.|++++|++.+++.++.+ +.+..+|..+..++...|++++|...|++..+ +.|+.......+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 467778888999999999999999988742 33678899999999999999999999999988 45654443333333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00013 Score=57.19 Aligned_cols=94 Identities=11% Similarity=0.186 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHHHH
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSILL 416 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ll 416 (601)
-.+...|.+.|++++|+..|.+..+.. +.+..+|..+..+|.+.|++++|+..++++++.. .... ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345556667777777777777766654 3456667777777777777777777777765421 0000 23566666
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 007510 417 VACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..+...+++++|.+.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677777777777777777665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00087 Score=55.31 Aligned_cols=63 Identities=13% Similarity=-0.086 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
+|+.+..+|.+.|++++|+..++..+...+. +...+..+..+|...|++++|...|+...+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3455555666666666666666666555432 55555666666666666666666666665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00033 Score=54.76 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VHTYGA 167 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~ 167 (601)
+-.+...+.+.|++++|+..|+..++.+ +.+..++..+..+|.+.|++++|++.++.+++.. +.+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4456667778888888888888888775 4567788888888888888888888888876532 111 135566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 168 LIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
+...+...+++++|+..|++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666777777888888888776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00056 Score=56.51 Aligned_cols=93 Identities=9% Similarity=-0.073 Sum_probs=43.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKA-D-------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (601)
.....+.+.|++++|+..|+..++.-... . ..+|+.+..+|.+.|++++|+..++..+... +.++
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~ 96 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNE 96 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccch
Confidence 34445666667777777666665431100 0 1223334444444444444444444444432 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 163 HTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (601)
.+|..+..+|...|++++|+..|++..+
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.62 E-value=0.00077 Score=54.49 Aligned_cols=116 Identities=19% Similarity=0.128 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (601)
..+..-...+.+.|++.+|+..|.+.+..-.. ++..... .... ....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKN-------IEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhh-------HHHHHHhhH
Confidence 34556667778888888888888877653111 1111100 0000 113467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007510 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (601)
..+|.+.|++++|++.++...+.. +.++.+|..+..+|...|++++|+..|++..+ +.|+....
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~ 137 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDI 137 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 888999999999999999988764 45788999999999999999999999999887 56765443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=2.8e-05 Score=77.41 Aligned_cols=114 Identities=11% Similarity=-0.074 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+.+.|+.+.|...+........ ..++..+...+...|++++|...|++..+..+. +...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 34455555666667777777666655443321 245666777777778888888888777766443 55677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (601)
+...|+..+|...|.+..... +|.+.++..|...+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 777888888888887777665 55666777776666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=0.00022 Score=57.22 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA----------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
+.+++|+..++...+.. |.++.++..+..+|... +.+++|+..|++..+.. +.+..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 33444444444444443 33344444444444322 23345555555555433 23445555555555433
Q ss_pred C-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 007510 388 D-----------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 388 g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (601)
| .+++|.+.|++..+ +.|+..+|..-+..+ ..+.+++.++.+.|
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 2 24555666666555 455555444433333 23445555544444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=0.0012 Score=54.82 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVV 199 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 199 (601)
.+..+...+.+.|++++|+..++.+++.. +-+...|..++.+|.+.|+..+|++.|+++.. .|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34455555566666666666666655543 34555566666666666666666666655422 355555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.00096 Score=54.99 Aligned_cols=61 Identities=8% Similarity=-0.097 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|++.|+....
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444555555555555444432 23344444444445555555555555544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.40 E-value=0.0016 Score=53.60 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
.|..+..+|.+.|++++|+..+.+.++.... +...|..+..++...|++++|...|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444445555555555555555555544332 4444555555555555555555555555444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.0023 Score=53.01 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----KKGVIPDEV 305 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~ 305 (601)
.+..+...+.+.|++++|...++.+.+.+ +.+...|..++.+|.+.|+..+|++.|+++. +.|+.|...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 34455566666666666666666666655 5556666666666666666666666666542 235555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.36 E-value=0.0051 Score=50.31 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
|+.+..+|.+.|++++|+..++...+.+ +.+..+|..+..+|...|++++|...|.+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344445555555555555555555554 445555555555555555555555555555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.34 E-value=0.0019 Score=52.99 Aligned_cols=96 Identities=8% Similarity=-0.057 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEA---GLKAD-----------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 160 (601)
+......+.+.|++.+|...|+..... ....+ ..+|+.+..+|.+.|++++|+..++..++.. +.
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~ 96 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA 96 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc
Confidence 344455566677777777777665431 00000 1123334444445555555555555544433 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
+..+|..+..+|...|++++|...|++....
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444445555555555555555555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.29 E-value=0.0007 Score=54.15 Aligned_cols=96 Identities=9% Similarity=-0.000 Sum_probs=50.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
+.+.+++|++.|+...+.+ |.+...+..++.++...+++..+.+ ..+.+++|+..|+
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e---------------------~~~~~~~Ai~~~~ 65 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD---------------------AKQMIQEAITKFE 65 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH---------------------HHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH---------------------HHHHHHHHHHHHH
Confidence 4455777777777777766 6666666665555544333322211 1123445555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHHC
Q 007510 117 LVQEAGLKADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNA 156 (601)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~ 156 (601)
...+.. +.+..+|..+..+|...| .+++|.+.|++.++.
T Consensus 66 kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 66 EALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 555543 334555555555554433 234555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00035 Score=62.24 Aligned_cols=121 Identities=11% Similarity=0.041 Sum_probs=67.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAK 180 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 180 (601)
..+.|++++|+..++..++.. +.|...+..+...++..|++++|.+.|+...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 345677777777777777764 556777777777777777777777777777765 333 3444444444433333333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
+..-+......+-+++...+......+...|+.++|.+.+.++..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 222111111111112222333334556666777777777766654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.15 E-value=0.00035 Score=62.26 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=75.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHH
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKT 393 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A 393 (601)
.+.|++++|+..+++.++.. +.|...+..+...|+..|++++|.+.|+...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 34577788888887777765 556777777778888888888888877777764 343 44444444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 394 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 333222222111222344445566678889999999999888764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.50 E-value=0.024 Score=45.34 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=48.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC---
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLK-A----------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GIEPN--- 161 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~-~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~--- 161 (601)
.+.+.|++++|+..|++.++.... | ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 445567777777777766642111 1 1245666666666666666666666665431 01111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 162 --VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 162 --~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
..+++.+..+|...|++++|+..|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1134455556666666666666665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.46 E-value=0.031 Score=44.65 Aligned_cols=90 Identities=11% Similarity=0.016 Sum_probs=52.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----CCCCC---
Q 007510 348 ACSNAKNWQKALELYEHMKSIKL-KP----------TVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPN--- 408 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~-~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~--- 408 (601)
.+.+.|++++|+..|++..+... .| ....|+.+..+|.+.|++++|+..+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34455666666666665553110 01 1245666677777777777777776665431 11222
Q ss_pred --HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 409 --TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 409 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
...+..+..+|...|++++|...|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456667788888888888888887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.026 Score=40.60 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAG-----LKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
.+...+.+.|++++|...|++..+.. ..++ ..+++.|..++.+.|++++|++.++++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44455555555555555555544321 0111 334555555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.65 E-value=0.22 Score=38.04 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCC
Q 007510 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDD 424 (601)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 424 (601)
.+.++|.+.+++..+.| +......|...|.. ..+.++|+++|++..+.| +......|...|.+ ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555555555555433 33344444444332 334556666666665544 23333333333333 345
Q ss_pred HHHHHHHHHHHHHCC
Q 007510 425 VEVGLMLLSQAKEDG 439 (601)
Q Consensus 425 ~~~a~~~~~~~~~~g 439 (601)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.044 Score=39.32 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
++..+..+|.+.|++++|...++++.+.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.17 E-value=0.3 Score=37.21 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCC
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQ 389 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 389 (601)
.+.++|...+++..+.| ++..+..|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666655554 33444444444443 345666677776666543 33444444444443 345
Q ss_pred hhHHHHHHHHHHhCC
Q 007510 390 LPKTMEVLSDMKSLG 404 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g 404 (601)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.80 E-value=0.85 Score=33.55 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=87.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (601)
-.|..++..++..+..... +..-|+.+|--....-+-+-..++++.+-+. .| ...++++.....
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence 3466666666666655442 3444555554444444444444444333211 11 124455554444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 007510 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
-+-.+ ..+....+..++.+.+.|+-++-.++.+.+.+. -+|++.....+..||.+.|+..++-+++.++-+.|+
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 44333 245556677788888999999888898887764 478888888999999999999999999999888775
Q ss_pred C
Q 007510 441 I 441 (601)
Q Consensus 441 ~ 441 (601)
.
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.88 E-value=1.2 Score=32.68 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
..-++.+.+.|+-+.-.++++.+.+. -+|++.....+..+|.+.|...++-+++.+.-+.|+
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33444555555555555555554442 234555555555566666666666666655555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.23 E-value=1.6 Score=32.17 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007510 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (601)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (601)
.+.+.|--....++.++.. .++++.+|++..+.+ +.+. ..+-.|.-+|.+.|++++|+..++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 3555555556666665543 457788888776532 2233 3455666678888888888888888877 5666555
Q ss_pred HHHHHHH
Q 007510 447 FKCIIGM 453 (601)
Q Consensus 447 ~~~li~~ 453 (601)
...+..+
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.11 E-value=6.1 Score=36.85 Aligned_cols=116 Identities=8% Similarity=-0.070 Sum_probs=63.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 248 GQVDRAREVYKMIHKYNIKGTPEVYTI----AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (601)
.+.+.+..++....... ..+..-+.. +...+...+..+.+...+......+. +.......+......++...+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 45666777776665543 222222222 22222344556666666666555433 333334444445566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
...+..+.... .....-.--+..++...|+.+.|...|.....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 77776653221 12233334556677777777777777777653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.09 E-value=2.1 Score=29.78 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+-++.. ..++...|..++.-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 44567777778878889999999999999999999999999999988743 223456788877654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.64 E-value=1.5 Score=32.33 Aligned_cols=71 Identities=6% Similarity=-0.050 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007510 337 VGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (601)
Q Consensus 337 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (601)
+...+--....++.+.. +.++++.+|+.+.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 34444444555555443 3456666776666432 112 24555566667777777777777777666 455543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.09 E-value=13 Score=34.37 Aligned_cols=203 Identities=7% Similarity=-0.050 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007510 176 GQVAKAFGAYGIMRSKNVKPDRVVFNAL----ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (601)
.+.+.|..++....... ..+...+..+ ...+...+..+.+...+...... ..+.......+....+.+++.
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHTCHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc----ccchHHHHHHHHHHHHcCChH
Confidence 46667777776665432 1222222222 22233445566676666665543 233344444555556667777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
.+...+..+.... ........-+..++...|+.++|...|...... ++ |-..+.+ .+.|..-. +.
T Consensus 303 ~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~-------~~ 367 (450)
T d1qsaa1 303 GLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE-------LK 367 (450)
T ss_dssp HHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC-------CC
T ss_pred HHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC-------CC
Confidence 7777777664321 223444556677777778888888877776542 23 2222221 22222100 00
Q ss_pred HCCCC--CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 332 NQGIS--VGII----SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 332 ~~~~~--~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
....+ +... .-...+..+...|....|...|..+.+. .+......+.....+.|.++.|+....+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00000 0000 0112345677889999999999888753 456667777888889999999998777654
|