Citrus Sinensis ID: 007515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600
Protein Sequence
MEIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTSHESSNSDLDSSDQGGYHLY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHcccHHHHcccccccccHHHHHHHHccHHHHHHHHHcccHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHccHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccHcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHcccccHEHHHHHccccccHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccHHEEEEEEHHHHHHHHHHHHHEEEEEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
meieainpymerHLFETILRGDTQAFLSLIQQDEAKikqtvpgslnTILHLTARFGHEELASEILKLCPEMVAAEnekmetplheacREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAwkkdlnghtplhlscskGHLEITRELLkldpdlsslpdnegrtplhWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITklanmpdndgntiLHLATAGKLTTMVIYLLKLGvdvnainrkgytaldvvesdasnsgalqIVPALeeagarrcdqlppmsphdiqpigdtspisaqssiprraprespsrhhrrRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTfaaginppggfnqvsgkslvgkqtsFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKmkeknrspnssiSRVEELRMMKKtshessnsdldssdqggyhly
Flexible Loop (DISEMBL)
meieainpymERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDlsslpdnegrtPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGdtspisaqssiprraprespsrhhrrrnrrrrekqielqteglrnarkTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWewrkmkeknrspnssisrvEELRMMKktshessnsdldssdqggyhly
Low Complexity Region (SEG)
MEIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREllkldpdlsslpdNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPrraprespsrhhrrrnrrrreKQIELQTEGLRNARKtiiivavliatvtfaaGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTshessnsdldssdQGGYHLY
Disordered region (IsUnstruct)
*****INPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENE*METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD***********RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE**********I*********************************************************************LRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWR*********************************************
Disordered Region (DISOPRED)
MEIEAI*PYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI***********************************EGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRK*****************************************D**G*HL*
Disordered Region (DISEMBL)
MEIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSP****************************EKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKM***********SRVEELR*************************
Disordered Region (DISPRO)
*EI**INPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAP******HHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWR*********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTSHESSNSDLDSSDQGGYHLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	600	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.83	0.844	0.295	5e-47
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.783	0.896	0.284	5e-45
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.71	0.800	0.272	2e-41
B2RXR6	993	Serine/threonine-protein	yes	no	0.471	0.284	0.295	8e-21
Q5F478	990	Serine/threonine-protein	yes	no	0.441	0.267	0.312	2e-20
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.461	0.148	0.323	6e-20
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.463	0.235	0.286	9e-20
Q8N8A2	993	Serine/threonine-protein	no	no	0.465	0.280	0.298	1e-19
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.465	0.148	0.311	1e-19
A2AS55	361	Ankyrin repeat domain-con	no	no	0.495	0.822	0.279	2e-19

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  189 bits (480), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 160/541 (29%), Positives = 255/541 (47%), Gaps = 43/541 (7%)

Query: 37  IKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVK 96
           +KQ      +T LHL A+ G      +ILK         N +ME  L          F  
Sbjct: 66  VKQVTGRHNDTELHLAAQRGDLAAVQQILKDI-------NSQMEGILSGE------EFDA 112

Query: 97  LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT--TSLHVSA 154
               I  S++ ++N   E+ L+ A ++G LDV K+LL YSS   +     +    LH++A
Sbjct: 113 EVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAA 172

Query: 155 MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEG 214
           + GH  IV+ LL+     +     +  TPL  +  +GH E+  +LL    +L  +  +  
Sbjct: 173 IQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNN 232

Query: 215 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT 274
           +  LH AA +G + +I  +LS + Q A      G+T LH+ VK    E VK L++     
Sbjct: 233 KNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDA--DP 290

Query: 275 KLANMPDNDGNTILHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGA 333
            +   PD   NT LH+AT  K   +V  LL L   + N + R   TALD+ E    +  +
Sbjct: 291 AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEES 350

Query: 334 LQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRR 393
             I   L  +GA R ++L        QP  +      Q         E   R ++  +  
Sbjct: 351 SYIKECLARSGALRANELN-------QPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNI 403

Query: 394 RREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVF 453
            +E + +L  EG+ NA  ++ +VAVL ATV FAA    PGG N   G ++V  + SFK+F
Sbjct: 404 SKELR-KLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNN-DGSAVVVGRASFKIF 461

Query: 454 MVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWL-----SVSFLAAAYIAAI 508
            + N +ALF SL +V+  ++++  + K+  +++ V +++MWL     SV+FLA++YI   
Sbjct: 462 FIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV- 520

Query: 509 WTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSI 568
                 GR   W +  V  +GG     I  G+   +  + ++    R M++K +S   S 
Sbjct: 521 ------GRKNEWAAELVTVVGG----VIMAGVLGTMTYYVVKSKRTRSMRKKVKSARRSG 570

Query: 569 S 569
           S
Sbjct: 571 S 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  182 bits (463), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 144/506 (28%), Positives = 249/506 (49%), Gaps = 36/506 (7%)

Query: 63  EILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV-----IYKLNRDNESVL 117
           EI K   + + A  +  +TPLH A REG+ + +   +G    V     + + N+  E+ L
Sbjct: 3   EIKKTMTKQMTARRD--DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETAL 60

Query: 118 YVACERGRLDVAKQLLNYSSLLILEVDGLT--TSLHVSAMAGHLDIVKELLEARQEFAWK 175
           YVA E G  D+ K L+ +S  ++          + H++A  G+L ++  L+EA  E ++ 
Sbjct: 61  YVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFT 120

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
            D +  T LH + S+GH EI   LL    DL+++  + G+T LH AA  G   I+ +++ 
Sbjct: 121 FDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIE 180

Query: 236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 295
                       G+T LH+ VK    E V  LME      L N  DN GNT LH+A    
Sbjct: 181 KKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--SLINSADNKGNTPLHIAVRKN 238

Query: 296 LTTMVIYLLKLG-VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPM 354
              +V  +LK   V   A+N+ G TALD+ E     +G  +IVP L++ G +    + P 
Sbjct: 239 RAEIVQTVLKYCEVSRVAVNKSGETALDIAE----KTGLHEIVPLLQKIGMQNARSIKP- 293

Query: 355 SPHDIQPIGDTSPISAQ-SSIPRRAPRESPSRHHRRRNRRRREKQI-ELQTEGLRNARKT 412
               ++P G +  +    S I      +       RR  +   K++ ++ TEGL NA  +
Sbjct: 294 -AEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINS 352

Query: 413 IIIVAVLIATVTFAAGINPPGGFNQVS---------GKSLVGKQTSFKVFMVCNIVALFL 463
             +VA+LIATV FAA  N PG +             G++    +  F +F+V +  ALF+
Sbjct: 353 TTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFI 412

Query: 464 SLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSA 523
           SL +V+   S++  +R++  Q++ + +++MW++   ++ A+++  + ++  G     ++ 
Sbjct: 413 SLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVV--GEKEKPLAV 470

Query: 524 AVVSLGGGFTLAIFTGLGVLLARHWL 549
            V ++G    L + + LG +   +W+
Sbjct: 471 GVTAIGA---LIMVSTLGTMC--YWV 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 220/452 (48%), Gaps = 26/452 (5%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT--TSLHVSAMAGHLDIVKELLE 167
           N   E+ +Y++      D+ + L+ +SSL  +++   +   + HV+A  GHL IVKELL 
Sbjct: 56  NDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLR 115

Query: 168 ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI 227
              E     D +  +PL+ +  + HLEI   +L +DP  + +    G+T LH A   G +
Sbjct: 116 LWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLL 175

Query: 228 NIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTI 287
            I+  ++  +     ++   G+T LH+ VK    E V+ +++  + T L N  D  GNT 
Sbjct: 176 RIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQA-DYTIL-NERDRKGNTA 233

Query: 288 LHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 346
           LH+AT      +   LL    ++VNAIN +  TA+D+ +    +  AL+I  AL EAGA+
Sbjct: 234 LHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAK 293

Query: 347 RCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQI-----EL 401
                        + IG      A          E  S+  +     RR   I     +L
Sbjct: 294 HG-----------RFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKL 342

Query: 402 QTEGLRNARKTIIIVAVLIATVTFAAGINPPGG-FNQVS--GKSLVGKQTSFKVFMVCNI 458
             E ++N   +I +VAVL A++ F A  N PG  F + S  G++ +  +T F+VF + N 
Sbjct: 343 HREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNA 402

Query: 459 VALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGM 518
            +LF+SL +V+  ++++ +  ++  +++ V +++MW + +    A++A  + ++  G+G 
Sbjct: 403 TSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVV--GKGN 460

Query: 519 VWVSAAVVSLGGGFTLAIFTGLGVLLARHWLR 550
            W++  +  LG    +     +   + R   R
Sbjct: 461 SWMAITITLLGAPILVGTLASMCYFVFRQRFR 492

Arabidopsis thaliana (taxid: 3702)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score =  102 bits (254), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T L+L A  GH E    ++     +   +N    TPLH +   G    ++L +    +P 
Sbjct: 602 TALYLAAFKGHTECVEALVNQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLETADNPE 661

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVK 163
           V+   +   ++ L +A   G +D    LL   +++  +++ G  T+LH   M GH + V+
Sbjct: 662 VVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIVG-CTALHRGIMTGHEECVQ 720

Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK--LDPDLSSLPDNEGRTPLHWA 221
            LLE       K D  G TPLH + ++GH     ELL+  L  +   L DN+G TPLHWA
Sbjct: 721 MLLEQEASILCK-DSRGRTPLHYAAARGHATWLNELLQIALSEEDCCLKDNQGYTPLHWA 779

Query: 222 AIKGRINIIDEILSLNLQSAEMRTIHGE--TVLHLTVKNNQYEAVKYLMETLNITKLANM 279
              G  N I E+L   L+    R   G   T LH  + N        L+  ++ + + + 
Sbjct: 780 CYNGNENCI-EVL---LEQKCFRKFIGNPFTPLHCAIINGHESCASLLLGAIDPS-IVSC 834

Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
            D+ G T LH A  G     +  LL+    VNA++  G TAL ++ ++   +GA+ I+
Sbjct: 835 RDDKGRTTLHAAAFGDHAECLQLLLRHDAQVNAVDNSGKTAL-MMAAENGQAGAVDIL 891

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 130/282 (46%), Gaps = 17/282 (6%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLF--VGIDPS 104
           T L L A  GH E    ++     +   +N    TPLH +   G    ++L   V  +P 
Sbjct: 602 TALDLAAFKGHAECVEALISQGASVTVKDNVTKRTPLHASVINGHTPCLRLLLEVADNPD 661

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVK 163
           V    +   ++ L +A   G +D    LL   +S+   ++ G  T+LH   M GH + V+
Sbjct: 662 VT---DAKGQTPLMLAVAYGHIDAVSLLLEKEASVDAADLLG-CTALHRGIMTGHEECVQ 717

Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK--LDPDLSSLPDNEGRTPLHWA 221
            LLE ++     KD  G TPLH + ++GH     ELL+  L  +  SL DN+G TPLHWA
Sbjct: 718 MLLE-KEVSILCKDARGRTPLHFAAARGHATWLSELLQIALSEEDCSLKDNQGYTPLHWA 776

Query: 222 AIKGRINIIDEILSLNLQSAEMRTIHGETV--LHLTVKNNQYEAVKYLMETLNITKLANM 279
              G  N I E+L   L+    R  +G +   LH  V N+       L+  ++ + + N 
Sbjct: 777 CYNGHENCI-EVL---LEQKFFRKFYGNSFSPLHCAVINDHENCASMLIGAIDAS-IVNC 831

Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
            D+ G T LH A        +  LL     VNA++  G TAL
Sbjct: 832 KDDKGRTPLHAAAFADHVECLQLLLSHSAQVNAVDHAGKTAL 873

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 138/297 (46%), Gaps = 20/297 (6%)

Query: 45  LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GID 102
           + T LH+ AR GH E+A  +L+   +  A   +  +TPLH A R G    VKL +  G  
Sbjct: 433 VETPLHMAARAGHTEVAKYLLQNKAKANAKAKDD-QTPLHCAARIGHTGMVKLLLENGAS 491

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIV 162
           P++         + L+ A   G +D A  LL   +          T LHV+A  G + + 
Sbjct: 492 PNLATTAGH---TPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRLA 548

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
           + LLE  A    A K   NG TPLH++    +L+I + LL       S P   G TPLH 
Sbjct: 549 ELLLEHDAHPNAAGK---NGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHI 604

Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP 280
           AA + +I +   +L     SA   ++ G T LHL  +    E V  L   L+     N+ 
Sbjct: 605 AAKQNQIEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHTEMVALL---LSKQANGNLG 660

Query: 281 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           +  G T LHL +      +   L+K GV V+A  R GYT L V    AS+ G +++V
Sbjct: 661 NKSGLTPLHLVSQEGHVPVADVLIKHGVTVDATTRMGYTPLHV----ASHYGNIKLV 713

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 99.0 bits (245), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 26/304 (8%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
           T+LH    F + +L   ++    + V A+ +   T LH A  +G L+ V L +     V 
Sbjct: 706 TVLHYAVSFNNSDLVYLLIAYGAD-VNAKTDNGLTALHYAVYDGNLDLVSLLISHGADVN 764

Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELL 166
            K N   E++LY A + G  D+   L+ Y + +  + D   T LH +  +G+LD+V  L+
Sbjct: 765 AKTNSG-ETILYSAVDYGSPDLVYLLIAYGADVNAKTDNGETVLHYAVESGNLDLVSLLI 823

Query: 167 EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR 226
                       N  T LH +   G+L +   L+K   D+ +   N G T LH+AA  G 
Sbjct: 824 HNGANVN-----NAKTILHFAAKSGNLNLVNWLIKNKADIHA-KTNSGETILHFAAESGN 877

Query: 227 INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD----- 281
           +N+++ ++  N      +T  GET+LH   K+     V +L++        N  D     
Sbjct: 878 LNLVNWLIK-NKADIHAKTNSGETILHFAAKSGNLNLVNWLIK--------NKADIHAKT 928

Query: 282 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 341
           N G TILH A       +V +L+K   D++A    G T L      A+ SG L +V  L 
Sbjct: 929 NSGETILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHF----AAESGNLNLVSLLI 984

Query: 342 EAGA 345
             G 
Sbjct: 985 HNGT 988

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 139/302 (46%), Gaps = 23/302 (7%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGI--DPS 104
           T L L A  GH E    ++     +   +N    TPLH +   G    ++L + I  +P 
Sbjct: 602 TALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADNPE 661

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLL----NYSSLLILEVDGLTTSLHVSAMAGHLD 160
            +   +   ++ L +A   G +D    LL    N  ++ IL      T+LH   M GH +
Sbjct: 662 AVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDTVDILGC----TALHRGIMTGHEE 717

Query: 161 IVKELLEARQEFA-WKKDLNGHTPLHLSCSKGHLEITRELLK--LDPDLSSLPDNEGRTP 217
            V+ LLE  QE +   KD  G TPLH + ++GH     ELL+  L  +     DN+G TP
Sbjct: 718 CVQMLLE--QEVSILCKDSRGRTPLHYAAARGHATWLSELLQMALSEEDCCFKDNQGYTP 775

Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGE--TVLHLTVKNNQYEAVKYLMETLNITK 275
           LHWA   G  N I E+L   L+    R   G   T LH  + N+       L+  ++ + 
Sbjct: 776 LHWACYNGNENCI-EVL---LEQKCFRKFIGNPFTPLHCAIINDHGNCASLLLGAID-SS 830

Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
           + +  D+ G T LH A        +  LL+    VNA++  G TAL ++ ++   +GA+ 
Sbjct: 831 IVSCRDDKGRTPLHAAAFADHVECLQLLLRHSAPVNAVDNSGKTAL-MMAAENGQAGAVD 889

Query: 336 IV 337
           I+
Sbjct: 890 IL 891

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 45  LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GID 102
           + T LH+ AR GH E+A  +L+     V A+ +  +TPLH A R G  N VKL +    +
Sbjct: 437 VETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 495

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIV 162
           P++         + L++A   G ++    LL   +          T LHV+A  G + + 
Sbjct: 496 PNLATTAGH---TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 552

Query: 163 KELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA 222
           + LLE R         NG TPLH++    +L+I + LL       S P   G TPLH AA
Sbjct: 553 ELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAA 610

Query: 223 IKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN 282
            + ++ +   +L     SA   ++ G T LHL  +    E V  L   L+     N+ + 
Sbjct: 611 KQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALL---LSKQANGNLGNK 666

Query: 283 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
            G T LHL        +   L+K GV V+A  R GYT L V    AS+ G +++V
Sbjct: 667 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV----ASHYGNIKLV 717

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|A2AS55|ANR16_MOUSE Ankyrin repeat domain-containing protein 16 OS=Mus musculus GN=Ankrd16 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 147/315 (46%), Gaps = 18/315 (5%)

Query: 19  LRGDTQAFLSLIQ-------QDEAKIKQTVPG-SLNTILHLTARFGHEELASEILKLCPE 70
           L GD +    L+Q       Q+E  + +   G + +T+LH  AR G +++ + +++    
Sbjct: 3   LPGDPRRLCRLVQEGRLRDLQEELAVARGCRGPAGDTLLHCAARHGRQDILAYLVEAWSM 62

Query: 71  MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAK 130
            + A N   + PLHEA   G  + V+  +G   +V+  L + + + L +AC R  LDV +
Sbjct: 63  DIEATNRDYKRPLHEAASMGHRDCVRYLLG-RGAVVDSLKKADWTPLMMACTRKNLDVIQ 121

Query: 131 QLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-GHTPLHLSCS 189
            L+ + +  +L+      S H+++  GH  I++ LL    + AWK + N   TPLH +  
Sbjct: 122 DLVEHGANPLLKNKDGWNSFHIASREGHPVILRYLLTVCPD-AWKTESNIRRTPLHTAAM 180

Query: 190 KGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 246
            G LE  + LL+    +PD     DN G TP   A   G ++I   +L  +   +     
Sbjct: 181 HGCLEAVQVLLERCHYEPDCR---DNCGVTPFMDAIQCGHVSIAKLLLEQHKACSSAADS 237

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
            G   LH      Q EA+++L+  L I  +     +   T LH A     T  V  LL L
Sbjct: 238 MGAQALHRAAVTGQDEAIRFLVCGLGI-DVDVRAKSSQLTALHYAAKEGQTNTVQTLLSL 296

Query: 307 GVDVNAINRKGYTAL 321
           G D+N+ + +  + L
Sbjct: 297 GADINSTDERNRSVL 311

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	600
359476356	601	PREDICTED: ankyrin repeat-containing pro	0.983	0.981	0.684	0.0
224142976	591	predicted protein [Populus trichocarpa]	0.978	0.993	0.689	0.0
255550978	595	ankyrin repeat-containing protein, putat	0.981	0.989	0.664	0.0
147765315	580	hypothetical protein VITISV_020094 [Viti	0.948	0.981	0.656	0.0
225430027	595	PREDICTED: ankyrin repeat-containing pro	0.98	0.988	0.610	0.0
296081888	600	unnamed protein product [Vitis vinifera]	0.971	0.971	0.607	0.0
296081857	470	unnamed protein product [Vitis vinifera]	0.763	0.974	0.672	0.0
147812174	574	hypothetical protein VITISV_033967 [Viti	0.918	0.959	0.547	1e-172
297743226	1064	unnamed protein product [Vitis vinifera]	0.921	0.519	0.398	1e-109
224059128	534	predicted protein [Populus trichocarpa]	0.863	0.970	0.427	1e-107

>gi|359476356|ref|XP_003631824.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/602 (68%), Positives = 501/602 (83%), Gaps = 12/602 (1%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+R LFE +L+GD  +FLSL Q++E  IKQ VPGSLNT+LHL ARFGH ELASEI+ L P
Sbjct: 1   MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           E+ +AENEK+ETPLHEACREGR+  V L + +D  +  K+NR++ESVL+V CERG+LDV 
Sbjct: 61  ELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 130 KQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
           K LL N+S LL+LE+D  TTSLH +A  GH D+VKE++  R +F+WKKD  G TPLHL+C
Sbjct: 121 KHLLVNHSWLLMLELDAPTTSLHAAASGGHTDVVKEIIRERPDFSWKKDSQGCTPLHLAC 180

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG 248
           SKGHLEITRELL+LDPDL+SL DN+GRTPLHWAA+KGR+NIIDEILS++LQSAEMRT HG
Sbjct: 181 SKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAEMRTEHG 240

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
           ETVLHL VKNNQYEAVKYL ETLNI++L N PD+DGNTILHLATAGKLTT V+YLLKLGV
Sbjct: 241 ETVLHLAVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILHLATAGKLTTTVLYLLKLGV 300

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI 368
           +VNA+NRKGYT LDVVE+DASNSG+L +VPAL EAGA+RCDQLPP+S  +IQ I + S  
Sbjct: 301 NVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCDQLPPVS-QEIQTITEPSSG 359

Query: 369 SAQSSIPR------RAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIAT 422
               + P       + P ESP++HHRR+++RRREKQ+E QTEGLRNAR TI +VAVLIAT
Sbjct: 360 RLYPTSPNLPPPWPKRPPESPAKHHRRKHQRRREKQLEQQTEGLRNARNTITVVAVLIAT 419

Query: 423 VTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSM 482
           VTF+AG+NPPGGFNQ SGK+++GK+T FKVFMVCNI+ALFLSLGIVI LVSIIPF+RKSM
Sbjct: 420 VTFSAGVNPPGGFNQSSGKAIMGKKTPFKVFMVCNILALFLSLGIVIVLVSIIPFRRKSM 479

Query: 483 MQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGV 542
           M+LL+ TH+VMW+SV+F+AAAYIAA WTILP G    WV   +VS+GGG T+ I  GLGV
Sbjct: 480 MKLLISTHKVMWMSVTFMAAAYIAATWTILPGGPSTKWVLVTLVSIGGGCTMTICVGLGV 539

Query: 543 LLARHWLRKWEWRKMKEKNR--SPNSSI-SRVEELRMMKKTSHES-SNSDLDSSDQGGYH 598
           LL +HWLRKWEW+K K KN+  SP+SS+ SRV E++ +K+  H+S SNSD+DSS++GGYH
Sbjct: 540 LLIQHWLRKWEWKKTKRKNKDGSPHSSMNSRVGEMQTIKRGDHDSTSNSDVDSSEKGGYH 599

Query: 599 LY 600
           LY
Sbjct: 600 LY 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142976|ref|XP_002324803.1| predicted protein [Populus trichocarpa] gi|222866237|gb|EEF03368.1| predicted protein [Populus trichocarpa]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/595 (68%), Positives = 490/595 (82%), Gaps = 8/595 (1%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+R L E IL+G+  AFL+LIQ+DE  I QT+PGS + ILH+ +RFGH ELA EI++L P
Sbjct: 1   MDRRLREAILKGEVPAFLTLIQEDEHIIDQTIPGSSSNILHIVSRFGHVELAKEIVRLRP 60

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           E++  ENEKMETPLHEACREG++  V+L V  DP ++YK+N+DN S L VACERG+LDV 
Sbjct: 61  ELMFEENEKMETPLHEACREGKMEMVRLLVETDPWLVYKVNQDNGSALTVACERGKLDVV 120

Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
             LL++  LL+LE+DG TTSLH +A  GH DIVKE+L+AR +FAWK DL G +PLHL C 
Sbjct: 121 DYLLSFPGLLMLELDGFTTSLHAAASGGHTDIVKEILKARPDFAWKNDLQGCSPLHLCCK 180

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
           KGHLE+TRELL+ D +LSSL DN+GRTPLHWAAIKGR+N+IDEILS +L+SAE+ T HGE
Sbjct: 181 KGHLEVTRELLRFDAELSSLQDNDGRTPLHWAAIKGRVNVIDEILSTSLESAEVITKHGE 240

Query: 250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 309
           TVLHL VKNNQYEAVKYL E LNITKL + PDNDGNT LHLATAGKL+TMVIYLLKLGVD
Sbjct: 241 TVLHLGVKNNQYEAVKYLTEMLNITKLVDKPDNDGNTALHLATAGKLSTMVIYLLKLGVD 300

Query: 310 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPIS 369
           VNAIN++G TA DVVESD SNSG L I+PAL++AG +R DQLPP S  +IQ I     + 
Sbjct: 301 VNAINQRGQTAFDVVESDVSNSGVLLILPALQDAGGKRSDQLPP-SSIEIQQIQQEKSLL 359

Query: 370 AQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGI 429
           + S+   +   ES ++HHRR   RRREKQ+ELQTEGLRNAR TII+VAVLIATVTFAAGI
Sbjct: 360 SSST---KRMTESTTKHHRRSQHRRREKQLELQTEGLRNARNTIIVVAVLIATVTFAAGI 416

Query: 430 NPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVT 489
           NPPGGF Q +G+S  G+ +SFK+F+VCNIVALFLSLG V+FLVSI+PFQRKSMM LL VT
Sbjct: 417 NPPGGFRQDTGESTTGRHSSFKIFVVCNIVALFLSLGTVVFLVSIVPFQRKSMMILLTVT 476

Query: 490 HRVMWLSVSFLAAAYIAAIWTILP--RGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARH 547
           H+VMWLS+SF+AA YIAA+WTILP  RGRG  WV  A+V++GGG T+AIF GLGVLLA+H
Sbjct: 477 HKVMWLSISFMAAGYIAAMWTILPHGRGRGRQWVFVAIVAIGGGCTMAIFVGLGVLLAKH 536

Query: 548 WLRKWEWRKMKE--KNRSPNSSISRVEELRMMKKTSHESSNSDLDSSDQGGYHLY 600
           WLRKWEWR+ KE  KN SP+SS+SRVEEL MM+K SH+SSNSD+DSSD+GGYHLY
Sbjct: 537 WLRKWEWRRSKEKRKNESPSSSVSRVEELGMMRKGSHDSSNSDVDSSDKGGYHLY 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550978|ref|XP_002516537.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544357|gb|EEF45878.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/597 (66%), Positives = 490/597 (82%), Gaps = 8/597 (1%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVP-GSLNTILHLTARFGHEELASEILKLC 68
           M+  L ETIL+GD   FLSLIQ++E  + Q VP GS NTILHL AR GH  LA EI+KL 
Sbjct: 1   MDHRLQETILKGDVPTFLSLIQENEDIMSQEVPSGSRNTILHLAARLGHLNLAEEIVKLR 60

Query: 69  PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDV 128
           PEMV+  N+KMETPLHEACR+G++  VKL V  DP V+YKLN++NE+ L+VAC+RG+++V
Sbjct: 61  PEMVSEVNKKMETPLHEACRQGKMELVKLLVESDPWVLYKLNQENENALFVACQRGKVEV 120

Query: 129 AKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
              LLN+  LL  EVDG  TSLHV+A+ G+ +IV+E+++ RQ+FAWK+D+NG TPLHL+C
Sbjct: 121 VNYLLNFQWLLTSEVDGYATSLHVAALGGYAEIVREIMKIRQDFAWKRDINGCTPLHLAC 180

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG 248
           SKGHLE TRELLK D DLSSL DN+GRTPLHWAAIKGR+N+IDE+LS++L+ AEM T +G
Sbjct: 181 SKGHLETTRELLKYDADLSSLQDNDGRTPLHWAAIKGRVNVIDEVLSVSLEPAEMITKNG 240

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
           ETVLHL VKNNQ++AVKYLMETLNIT L N PD DGNT LHLATAGKL+ MVIYLLKL  
Sbjct: 241 ETVLHLGVKNNQFDAVKYLMETLNITNLINRPDKDGNTALHLATAGKLSAMVIYLLKLNG 300

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI 368
           DVN INRKG T LDVVESD SNSGAL I+PA+++AG +R DQLPP S    Q + + +P 
Sbjct: 301 DVNVINRKGQTVLDVVESDVSNSGALLILPAIQDAGGKRGDQLPPGSTEIHQIVQEYNP- 359

Query: 369 SAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAG 428
           S  SS P++   +SP+ HHRR++RRRREKQ+E Q+EGLRNAR TI +V+VLIATVTFAAG
Sbjct: 360 SLPSSPPKKV-LDSPNHHHRRKHRRRREKQLEDQSEGLRNARNTITVVSVLIATVTFAAG 418

Query: 429 INPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVV 488
           INPPGGFNQ+SG++++GK TSFKVF VCN+VALF SLGIVI LVSIIPF+RKSMM+LLVV
Sbjct: 419 INPPGGFNQLSGRTIMGKHTSFKVFAVCNVVALFTSLGIVIVLVSIIPFRRKSMMKLLVV 478

Query: 489 THRVMWLSVSFLAAAYIAAIWTILPRGRGM--VWVSAAVVSLGGGFTLAIFTGLGVLLAR 546
           TH++MW+S+SF+AAAYIAA+WT+LP G+G   VWV  A+ ++GGG T+ IF GLG LLA+
Sbjct: 479 THKIMWVSMSFMAAAYIAAMWTVLPHGQGWGGVWVLVAIAAIGGGCTVGIFMGLGFLLAQ 538

Query: 547 HWLRKWEWRKMKEKNR--SPNSSISRVEELRMMKKTSHES-SNSDLDSSDQGGYHLY 600
           HW+RK EWRK K+K +  SP+SSISR+EEL+ +K+   +S SNSD+DSSDQGGYHLY
Sbjct: 539 HWIRKSEWRKNKDKRKDASPSSSISRIEELKTIKRGDCDSTSNSDVDSSDQGGYHLY 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765315|emb|CAN66947.1| hypothetical protein VITISV_020094 [Vitis vinifera]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/602 (65%), Positives = 482/602 (80%), Gaps = 33/602 (5%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+R LFE +L+GD  +FLSL Q++E  IKQ VPGSLNT+LHL ARFGH ELASEI+ L P
Sbjct: 1   MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           E+ +AENEK+ETPLHEACREGR+  V L + +DP +  K+NR++ESVL+V CERG+LDV 
Sbjct: 61  ELSSAENEKLETPLHEACREGRVEIVALLMKVDPWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 130 KQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
           K LL N+S LL+LE+D  TTSLH +A  GH D+VKE++  R +F+WKKD  G TPLHL+C
Sbjct: 121 KHLLVNHSWLLMLELDAPTTSLHAAASGGHTDVVKEIIRERPDFSWKKDSQGCTPLHLAC 180

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG 248
           SKGHLEITRELL+LDPDL+SL DN+GRTPLHWAA+KGR+NIIDEILS++LQSAEMRT HG
Sbjct: 181 SKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAEMRTEHG 240

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
           ETVLHL VKNNQYEAVKYL ETLNI++L N PD+DGNTILHLATAGKLTT V+YLLKLGV
Sbjct: 241 ETVLHLXVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILHLATAGKLTTTVLYLLKLGV 300

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI 368
           +VNA+NRKGYT LDVVE+DASNSG+L +VPAL EAGA+RCDQLPP+S  +IQ I + S  
Sbjct: 301 NVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCDQLPPVS-QEIQTITEPSSG 359

Query: 369 SAQSSIPR------RAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIAT 422
               + P       + P ESP++HHRR+++RRREKQ+E QTEGLRNAR TI +VAVLIAT
Sbjct: 360 RLYPTSPNLPPPWPKRPPESPAKHHRRKHQRRREKQLEQQTEGLRNARNTITVVAVLIAT 419

Query: 423 VTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSM 482
           VTF+AGINPPGGFNQ SGK++                     +GIVI LVSIIPF+RKSM
Sbjct: 420 VTFSAGINPPGGFNQSSGKAI---------------------MGIVIVLVSIIPFRRKSM 458

Query: 483 MQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGV 542
           M+LL+ TH+VMW+S +F+AAAYIAA WTILP G    WV   ++S+GGG T+ IF GLGV
Sbjct: 459 MKLLISTHKVMWMSATFMAAAYIAATWTILPGGPSTKWVLVTLISIGGGCTMTIFVGLGV 518

Query: 543 LLARHWLRKWEWRKMKEKNR--SPNSSI-SRVEELRMMKKTSHES-SNSDLDSSDQGGYH 598
           LL +HWLRKWEW+K K KN+  SP+SS+ SRV E++ +K+  H+S SNSD+DSS++GGYH
Sbjct: 519 LLIQHWLRKWEWKKTKRKNKDGSPHSSMNSRVGEMQTIKRGDHDSTSNSDVDSSEKGGYH 578

Query: 599 LY 600
           LY
Sbjct: 579 LY 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430027|ref|XP_002281561.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/598 (61%), Positives = 460/598 (76%), Gaps = 10/598 (1%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+  L E +L+GD  AFL L+Q+DE  +KQ VP S +TILHL AR GH ELA+EILKL P
Sbjct: 1   MDERLHEAVLKGDVSAFLVLVQEDEDILKQVVPRSSSTILHLAARLGHPELAAEILKLSP 60

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           E+ AA NEK++TPLHEACREGR   VKL +  DP +  K+NRDNE+ LYV C+RGRLDV 
Sbjct: 61  ELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVV 120

Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
           KQLLN+  LL LE+DG TTSLH++A  GH DIVKE+L+ R +FA +KDL+G  PLHL+CS
Sbjct: 121 KQLLNHPWLLALELDGFTTSLHLAASRGHTDIVKEILKVRPDFAREKDLDGCIPLHLACS 180

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
           KGHLE+T ELL+LDPDL+SL D +G TPLHWA IKG +NIID+IL++ L  A+  T HGE
Sbjct: 181 KGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNIIDKILAIGLHLAQTTTKHGE 240

Query: 250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 309
           TVLHL VKNN+YEAV+YLME LN T+L N PD +GNTILHLA AGKLTTMV YLL+LGVD
Sbjct: 241 TVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHLAAAGKLTTMVKYLLELGVD 300

Query: 310 VNAINRKGYTALDVVESDASNSGA-LQIVPALEEAGARRCDQLPPMSP---HDIQPI-GD 364
           VNA N KG+T+LDV+ SDASNS A L+IV AL +AGA+RC QL P SP    + QP  G 
Sbjct: 301 VNAQNCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRCSQLSPASPEIQENHQPTSGV 360

Query: 365 TSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVT 424
            + ++  S  P+  P +SP +HH +++ + R+K ++ Q EGLRNAR    +VAVL+ATVT
Sbjct: 361 LNSLNVASPWPKVMP-DSPVQHHNKKHDQSRKKLLD-QNEGLRNARNKFTVVAVLVATVT 418

Query: 425 FAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQ 484
           F+AGINPPGGFNQ +GKS++GKQT FKVFMVCNI+ALFLSL IVI LVS+IP++R SMM+
Sbjct: 419 FSAGINPPGGFNQDTGKSMLGKQTPFKVFMVCNILALFLSLSIVIVLVSVIPYRRTSMMR 478

Query: 485 LLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLL 544
           LLV TH+VMW+S+ F+AAAY+AA W I+P G G  W  A ++ LGGG T+AIF   G++L
Sbjct: 479 LLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGSRWEFAVLLCLGGGCTMAIFLITGMVL 538

Query: 545 ARHWLRKWEWRKMKEKNR-SPNSSISRVEELRMMKKTSHESS-NSDLDSSDQGGYHLY 600
            R + RK++ RK+  K    P++ IS   E++M+K+  +ES+ NSD+DSSDQGGYHLY
Sbjct: 539 VRQF-RKYQLRKVNAKTYGGPDNIISHAGEMQMIKRHGYESTCNSDVDSSDQGGYHLY 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081888|emb|CBI20893.3| unnamed protein product [Vitis vinifera]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/593 (60%), Positives = 455/593 (76%), Gaps = 10/593 (1%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+  L E +L+GD  AFL L+Q+DE  +KQ VP S +TILHL AR GH ELA+EILKL P
Sbjct: 1   MDERLHEAVLKGDVSAFLVLVQEDEDILKQVVPRSSSTILHLAARLGHPELAAEILKLSP 60

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           E+ AA NEK++TPLHEACREGR   VKL +  DP +  K+NRDNE+ LYV C+RGRLDV 
Sbjct: 61  ELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVV 120

Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
           KQLLN+  LL LE+DG TTSLH++A  GH DIVKE+L+ R +FA +KDL+G  PLHL+CS
Sbjct: 121 KQLLNHPWLLALELDGFTTSLHLAASRGHTDIVKEILKVRPDFAREKDLDGCIPLHLACS 180

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
           KGHLE+T ELL+LDPDL+SL D +G TPLHWA IKG +NIID+IL++ L  A+  T HGE
Sbjct: 181 KGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNIIDKILAIGLHLAQTTTKHGE 240

Query: 250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 309
           TVLHL VKNN+YEAV+YLME LN T+L N PD +GNTILHLA AGKLTTMV YLL+LGVD
Sbjct: 241 TVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHLAAAGKLTTMVKYLLELGVD 300

Query: 310 VNAINRKGYTALDVVESDASNSGA-LQIVPALEEAGARRCDQLPPMSPH---DIQPI-GD 364
           VNA N KG+T+LDV+ SDASNS A L+IV AL +AGA+RC QL P SP    + QP  G 
Sbjct: 301 VNAQNCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRCSQLSPASPEIQENHQPTSGV 360

Query: 365 TSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVT 424
            + ++  S  P+  P +SP +HH +++ + R+K ++ Q EGLRNAR    +VAVL+ATVT
Sbjct: 361 LNSLNVASPWPKVMP-DSPVQHHNKKHDQSRKKLLD-QNEGLRNARNKFTVVAVLVATVT 418

Query: 425 FAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQ 484
           F+AGINPPGGFNQ +GKS++GKQT FKVFMVCNI+ALFLSL IVI LVS+IP++R SMM+
Sbjct: 419 FSAGINPPGGFNQDTGKSMLGKQTPFKVFMVCNILALFLSLSIVIVLVSVIPYRRTSMMR 478

Query: 485 LLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLL 544
           LLV TH+VMW+S+ F+AAAY+AA W I+P G G  W  A ++ LGGG T+AIF   G++L
Sbjct: 479 LLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGSRWEFAVLLCLGGGCTMAIFLITGMVL 538

Query: 545 ARHWLRKWEWRKMKEKNRS-PNSSISRVEELRMMKKTSHESS-NSDLDSSDQG 595
            R + RK++ RK+  K    P++ IS   E++M+K+  +ES+ NSD+DSSDQG
Sbjct: 539 VRQF-RKYQLRKVNAKTYGGPDNIISHAGEMQMIKRHGYESTCNSDVDSSDQG 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081857|emb|CBI20862.3| unnamed protein product [Vitis vinifera]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/507 (67%), Positives = 402/507 (79%), Gaps = 49/507 (9%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+R LFE +L+GD  +FLSL Q++E  IKQ VPGSLNT+LHL ARFGH ELASEI+ L P
Sbjct: 1   MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRP 60

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           E+ +AENEK+ETPLHEACREGR+  V L + +D  +  K+NR++ESVL+V CERG+LDV 
Sbjct: 61  ELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNRNDESVLFVGCERGKLDVV 120

Query: 130 KQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
           K LL N+S LL+LE+D  TTSLH +A  GH                     G TPLHL+C
Sbjct: 121 KHLLVNHSWLLMLELDAPTTSLHAAASGGH--------------------TGCTPLHLAC 160

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG 248
           SKGHLEITRELL+LDPDL+SL DN+GRTPLHWAA+KGR+NIIDEILS++LQSAEMRT HG
Sbjct: 161 SKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAEMRTEHG 220

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
           ETVLHL VKNNQYEAVKYL ETLNI++L N PD+DGNTILHLATAGKLTT V+YLLKLGV
Sbjct: 221 ETVLHLAVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILHLATAGKLTTTVLYLLKLGV 280

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI 368
           +VNA+NRKGYT LDVVE+DASNSG+L +VPAL EAGA+RCDQLPP+S  +IQ I + S  
Sbjct: 281 NVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCDQLPPVS-QEIQTITEPS-- 337

Query: 369 SAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAG 428
                                    RREKQ+E QTEGLRNAR TI +VAVLIATVTF+AG
Sbjct: 338 -------------------------RREKQLEQQTEGLRNARNTITVVAVLIATVTFSAG 372

Query: 429 INPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVV 488
           +NPPGGFNQ SGK+++GK+T FKVFMVCNI+ALFLSLGIVI LVSIIPF+RKSMM+LL+ 
Sbjct: 373 VNPPGGFNQSSGKAIMGKKTPFKVFMVCNILALFLSLGIVIVLVSIIPFRRKSMMKLLIS 432

Query: 489 THRVMWLSVSFLAAAYIAAIWTILPRG 515
           TH+VMW+SV+F+AAAYIAA WTILP G
Sbjct: 433 THKVMWMSVTFMAAAYIAATWTILPGG 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812174|emb|CAN61518.1| hypothetical protein VITISV_033967 [Vitis vinifera]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 336/614 (54%), Positives = 425/614 (69%), Gaps = 63/614 (10%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           M+  L E +L+GD  AFL L+Q+ E  +KQ VP S +TILHL AR GH ELA+EILK   
Sbjct: 1   MDERLHEAVLKGDVSAFLVLVQEXEDILKQVVPRSSSTILHLAARLGHXELAAEILK--- 57

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
                              EGR   VKL +  DP +  K+NRDNE+ LYV C+RGRLDV 
Sbjct: 58  -------------------EGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVV 98

Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHL----------------DIVKELLEARQEFA 173
           KQLLN+  LL LE+DG TTSLH++A  GH                 DIVKE+L+ R +FA
Sbjct: 99  KQLLNHPWLLALELDGFTTSLHLAASRGHTGSVDSRQQYLNRSYFTDIVKEILKVRPDFA 158

Query: 174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 233
            +KD +G TPLHL+CSKGHLE+T ELL+LDPDL+SL D +G TPLHWA IKG +NIID+I
Sbjct: 159 REKDFDGCTPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNIIDKI 218

Query: 234 LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA 293
           L++ L  A+  T HGETVLHL VKNN+YEAV+YLME LN T+L N PD +GNTILHLA A
Sbjct: 219 LAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHLAAA 278

Query: 294 GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA-LQIVPALEEAGARRCDQLP 352
           GKLTT               N KG+T+LDV+ SDASNS A L+IV AL +AGA+RC QL 
Sbjct: 279 GKLTT---------------NCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRCSQLS 323

Query: 353 PMSPH---DIQPI-GDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRN 408
           P SP    + QP  G  + ++  S  P+  P +SP +HH  ++ + R+K ++ Q EGLRN
Sbjct: 324 PASPEIQENHQPTSGVLNSLNVASPWPKXMP-DSPVQHHNXKHDQSRKKLLD-QNEGLRN 381

Query: 409 ARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIV 468
           AR    +VAVL+ATVTF+AGINPPGGFNQ +GKS++GKQT FKVFMVCNI+ALFLSL IV
Sbjct: 382 ARNKFTVVAVLVATVTFSAGINPPGGFNQXTGKSMLGKQTPFKVFMVCNILALFLSLSIV 441

Query: 469 IFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSL 528
           I LVS+IP++R SMM+LLV TH+VMW+S+ F+AAAY+AA W I+P G G  W  A ++ L
Sbjct: 442 IVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGSRWEFAVLLCL 501

Query: 529 GGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNR-SPNSSISRVEELRMMKKTSHESS-N 586
           GGG T+AIF   G++L R + RK++ RK+  K    P+  IS   E++M+K+  +ES+ N
Sbjct: 502 GGGCTMAIFLXTGMVLVRQF-RKYQLRKVNAKTYGGPDXIISHAGEMQMIKRHGYESTCN 560

Query: 587 SDLDSSDQGGYHLY 600
           SD+DSSDQGGYHLY
Sbjct: 561 SDVDSSDQGGYHLY 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743226|emb|CBI36093.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 332/587 (56%), Gaps = 34/587 (5%)

Query: 10  MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP 69
           ME  LF+ I   D   F  L+Q D+  +      S NT+LHL +RFGH E+ S+I+KL P
Sbjct: 1   MESSLFKAIATNDMFTFFQLVQ-DKDHLSARTARSRNTVLHLASRFGHHEMVSKIIKLDP 59

Query: 70  EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVA 129
                 N+K ETPLHEACR G  N V + +  +P V   LN +++S +++AC  G L+V 
Sbjct: 60  RTTEDCNKKGETPLHEACRHGHANVVMMLLETNPWVGCVLNHEDQSAMFLACSNGHLEVV 119

Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
           K +LN    + +         H++      D+V+++LE   +FA K D  G + LH +C 
Sbjct: 120 KLILNQPCKVKMFCCLTKFRYHIA------DVVRKILEVCPDFAPKTDKKGFSALHYACC 173

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
             +LEI + LL+LDP L+   DN   TPLH AA+KG+  +++E L++   S +  T  GE
Sbjct: 174 GDNLEIVKMLLRLDPGLAMKFDNSRCTPLHLAAMKGKGAVLEEFLAIVPTSFQFLTSEGE 233

Query: 250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGV 308
           TV HL V+ NQY A   L +    T L   PD +GNTILHLA +     +  Y++ K GV
Sbjct: 234 TVFHLIVRFNQYSAFVCLAQVFGDTLLFQRPDRNGNTILHLAVSAWRHRLADYIINKTGV 293

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI 368
           ++N  N +G T LD++    S S  + +   +++AG +R  +L                 
Sbjct: 294 EINFRNSRGQTVLDILNQAGSTSKNMHLEDMIKKAGGKRSIEL----------------- 336

Query: 369 SAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAG 428
            +   + +R  R+    H  R+NR     Q E+  E L+NAR TII+VA+LIATVTF AG
Sbjct: 337 -SHKHLSQRHRRDLLELHQIRQNR-----QNEIYKEALQNARNTIILVAILIATVTFTAG 390

Query: 429 INPPGGFNQ---VSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQL 485
           I+PPGG  Q   + GKS VG+  +FK+FM+ N +ALF SL IVI LVSIIPFQRKS+++L
Sbjct: 391 ISPPGGVYQDGPLKGKSTVGRTIAFKIFMISNNIALFSSLCIVIVLVSIIPFQRKSLVRL 450

Query: 486 LVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLA 545
           LVV H+VMW++VSF+A AY+AA W I+P  RG  W    ++SL  G   ++F  LGV L 
Sbjct: 451 LVVAHKVMWVAVSFMATAYVAATWVIIPHDRGTKWTLELLLSLSIGTVGSVFVYLGVKLV 510

Query: 546 RHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTSHESSNSDLDSS 592
           RH L K + R+ K         I         +    +SS SD+DS+
Sbjct: 511 RHRLTKLKTRREKHTKSKGMKQIEEAVPAADKRNNITQSSYSDVDSA 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059128|ref|XP_002299729.1| predicted protein [Populus trichocarpa] gi|222846987|gb|EEE84534.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/554 (42%), Positives = 320/554 (57%), Gaps = 36/554 (6%)

Query: 14  LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVA 73
           L+  +L  D  AF+SL++++EA + Q    + NT+LHL +R G  +L  EI+KL P MV 
Sbjct: 1   LYRAVLLNDIHAFISLVRKNEAILDQRTSTASNTVLHLASRLGFVDLVMEIIKLRPNMVQ 60

Query: 74  AENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
           AEN+ +ETPLHEACREG+   V L +     V    N +N+S L +AC  G L+V K LL
Sbjct: 61  AENKMLETPLHEACREGKSKIVLLLLQTGSWVASNFNMENQSPLLIACSYGHLEVVKVLL 120

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
           N    L LE D               +IVK +L A    A K D +G  PLH +C  GHL
Sbjct: 121 NQPLFLRLEYDNPH------------EIVKMILRACPNMAQKIDSDGCNPLHYACKNGHL 168

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
           EIT+ LL+ D DL+ + +N+G  PLH AAI G   I++E L++   S +  T  G+ V H
Sbjct: 169 EITKLLLRHDLDLTLIYNNKGFKPLHLAAIHGNGTILEEFLAMAPTSFDCLTTDGDNVFH 228

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL--KLGVDVN 311
           L V+ N + A   L      TKL   PD  GNTILH+A +G L  + I ++  +  VD+N
Sbjct: 229 LLVRFNAHSAFMCLEHVFGDTKLFQQPDQFGNTILHIAISGGLYHVRISVIINERKVDIN 288

Query: 312 AINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLP----PMSPHD-------IQ 360
             N +G+TALD++    S+     +   L++AG +    L       SP D       +Q
Sbjct: 289 HQNNRGHTALDILNHAGSSLEIQDLRDMLKKAGGKLGTGLSWSQKSESPRDALEREFDLQ 348

Query: 361 PIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLI 420
               +SP   +S I R+   +   RHHR        KQ +  TE L+NAR T+ +VA++I
Sbjct: 349 LQLGSSPYRHESIIRRKKLMKVHKRHHR--------KQHKAYTEALQNARNTLTVVAIMI 400

Query: 421 ATVTFAAGINPPGGFNQ---VSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPF 477
           ATVTF AGINPPGG  Q   + GKS  G+ ++FKVF + N +ALF SL IVI LVSIIPF
Sbjct: 401 ATVTFTAGINPPGGVYQEGPLKGKSTAGRTSAFKVFSITNNIALFTSLCIVIALVSIIPF 460

Query: 478 QRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIF 537
           QRK +M+LLVV H+ MW++VSF+AAAYIAAIW I+P   G VW   A++S+  G   + F
Sbjct: 461 QRKPLMKLLVVAHKGMWVAVSFMAAAYIAAIWVIMPESHGNVWTFEALISIFAGTLGSAF 520

Query: 538 TGLGVLLARHWLRK 551
             LGV L  H LRK
Sbjct: 521 IYLGVKLVGHHLRK 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	600
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.256	0.266	0.484	8.8e-69
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.888	0.886	0.304	2e-65
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.511	0.535	0.288	6.3e-55
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.843	0.846	0.269	2.7e-52
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.785	0.867	0.268	1.5e-42
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.793	0.719	0.255	2.2e-40
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.816	0.935	0.253	4.2e-40
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.843	0.857	0.265	5.3e-40
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.791	0.757	0.261	6.7e-39
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.746	0.738	0.262	1.3e-38

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 8.8e-69, Sum P(2) = 8.8e-69
 Identities = 76/157 (48%), Positives = 97/157 (61%)

Query:   398 QIELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS---GKSLVGKQTSFKVFM 454
             + ++  E L+NAR                 GINPPGG  Q     GKSLVGK T+FKVF 
Sbjct:   393 EYQMHIEALQNARNTIAIVAVLIASVAYAGGINPPGGVYQDGPWRGKSLVGKTTAFKVFA 452

Query:   455 VCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPR 514
             +CN +ALF SLGIVI LVSIIP++RK + +LLV THR+MW+SV F+A AYIAA W  +P 
Sbjct:   453 ICNNIALFTSLGIVILLVSIIPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPH 512

Query:   515 GRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRK 551
               G  W+  A+V++ GG    +F  LGV    HW +K
Sbjct:   513 YHGTQWLFPAIVAVAGGALTVLFFYLGVETIGHWFKK 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 168/551 (30%), Positives = 273/551 (49%)

Query:    14 LFETILRGDTQAFLSLIQQDEAKIKQTVP--GSLNTILHLTARFGHEELASEILKLCPEM 71
             +F+ IL+ D  AFL L++  E+ +++      + NT+LH+ A+ GH EL ++I++L P +
Sbjct:     4 IFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPSL 63

Query:    72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
             +++ N   +TPLH A   G +N V   +     +    N  N++ L++A     ++ AK 
Sbjct:    64 LSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLELYSARNNKNQTPLHLAFVSIFMEAAKF 123

Query:   132 LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK-KDLNGHTPLHLSCSK 190
             ++  ++ + L+      S   + + G   I++   E  ++ AW+ +D +  T LH +C K
Sbjct:   124 IVEKTNSVDLDELNFALSSGSTCIVGI--ILERFPELARKNAWEVEDGSRSTLLHYACDK 181

Query:   191 GHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 250
             G LE+T               ++G +PLH A  +G + I++E +  +  S  +RT   ET
Sbjct:   182 GDLELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKET 241

Query:   251 VLHLTVKNNQYEAVKYLMETLNITK--LANMPDNDGNTILHLATAGKLTTMVI-YLL-KL 306
             V HL  +N   +A  ++ E L  +   L    D  GNT+LH+A +    + +I Y++ K 
Sbjct:   242 VFHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKK 301

Query:   307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQP-IGDT 365
              +D+   N  GY A  ++   A +    + + +      +  +++        +P IG +
Sbjct:   302 IIDIRDRNNMGYRAYHLLPRQAQD---YEFISSYLRCDTKTSEEVDSKKAERNEPHIGHS 358

Query:   366 SPISAQSSIPXXXXXXXXXXXXXXXXXXXXXKQIE--LQTEGLRNARKXXXXXXXXXXXX 423
               I     I                      K +E  +  E L+NAR             
Sbjct:   359 EVIRLLKLIEISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASV 418

Query:   424 XXXXGINPPGGFNQVS---GKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRK 480
                 GINPPGG  Q     GKSLVG   +FKVF +CN +ALF SL IVI LVSIIP+QRK
Sbjct:   419 SYAGGINPPGGVYQDGPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRK 478

Query:   481 SMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGL 540
              + +LLV THR+MW+SV F+A AY+AA    +P   G  W+   ++S+ GG    +F+ L
Sbjct:   479 PLKKLLVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYL 538

Query:   541 GVLLARHWLRK 551
             GV    HW +K
Sbjct:   539 GVETISHWFKK 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.3e-55, Sum P(2) = 6.3e-55
 Identities = 92/319 (28%), Positives = 152/319 (47%)

Query:    14 LFETILRGDTQAFLSLIQQDEAKIKQTVP-GSLN-TILHLTARFGHEELASEILKLCPEM 71
             + + IL  D    L+L + + + +++     SL  T+LHL    GH+E+   I+KLCP +
Sbjct:    21 IIDAILANDVSTLLALAEGNLSVLRERYHWDSLGGTVLHLATELGHKEIVEAIIKLCPSL 80

Query:    72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
             V   N   +TPLH A R G    V   +    +    +N   E+   VAC     DVA  
Sbjct:    81 VGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTPVNGRGETAFVVACRYTNPDVA-- 138

Query:   132 LLNYSSLLILEVDGLTTS-LHVSAMAG-HLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
                  SL++ E   +T    + + + G + DI + +LE   + AW  D    TPLH +C+
Sbjct:   139 -----SLILEETSSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPLHHACN 193

Query:   190 KGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
               +LEIT+               +G TPLH AA+K  I I+ E      +  ++ T   E
Sbjct:   194 ANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKE 253

Query:   250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGV 308
             TV HL  ++    A  ++ E+ +   L +  D  GNT+LH A      ++++ +  +  +
Sbjct:   254 TVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSITYETTI 313

Query:   309 DVNAINRKGYTALDVVESD 327
             D++A N +G  A+D++  D
Sbjct:   314 DLSAKNNRGLKAVDLINVD 332

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 144/534 (26%), Positives = 257/534 (48%)

Query:    46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
             +T+LH      +EE A++++ LCP +V+  N    TPLH A   G +N +   +    + 
Sbjct:    69 STLLHKAVTQRNEEYATKVIDLCPSLVSVTNVDGNTPLHLAAEIGNINILWKMLETGEAE 128

Query:   106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL 165
               K+N+  ++   +AC    ++ A+ L+  +S + +        L+ +       I+  +
Sbjct:   129 CMKINKQGQTAFILACLNNNVNSARILVEGTSSMTM------VELNAAFSEQQQVIIDSI 182

Query:   166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXX--NEGRTPLHWAAI 223
             LE         D    T LH +C  G+LE+ R                 +G TPLH A I
Sbjct:   183 LEKFPNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVI 242

Query:   224 KGRINIIDEILSLNLQSAEMRTIHG--ETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 281
              G + I+ E L     S  + T  G  ETV HL  K  + +A  ++ ++ NI +L    D
Sbjct:   243 NGSVEILKEFLCKAPSSFNITT-QGTIETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLD 301

Query:   282 NDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 340
              + NT+LH+A +   T++V ++L +  +DV   N+KG+ A+D+++ +  +   L +    
Sbjct:   302 AEDNTVLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEGVDFPLLSLWFRD 361

Query:   341 EEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXXXXXXKQIE 400
             E    +R  +    +   ++ I +T+     SS                       K+ E
Sbjct:   362 EAEKIQRPARYVKFAHEPVELIRNTNNGEKLSS-------ESRAMDLLREGRDPRNKERE 414

Query:   401 LQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS---GKSLVGKQTSFKVFMVCN 457
             + +E L+NAR                 GINPPGG +Q     GK+  G+  +FK+F V N
Sbjct:   415 MHSESLQNARNTITIVAVLIASVAFTCGINPPGGVHQDGPFIGKATAGRTLAFKIFSVAN 474

Query:   458 IVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRG 517
              +ALF SL IV  LVSII ++ K++   +V+ H++MWL+V+ +A AY A+ W  +P   G
Sbjct:   475 NIALFTSLSIVTLLVSIISYRTKALKMCVVIAHKMMWLAVASMATAYAASAWITVPHNEG 534

Query:   518 MVWV---SAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSI 568
               W+   ++A+ S+  G   ++F  +  ++ +H L+K + R+ +   ++P++++
Sbjct:   535 SKWLVYTTSAIASVALG---SMFVYVSFMMVKHILKKDKLRRNQSHGKTPSTTL 585

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 137/511 (26%), Positives = 233/511 (45%)

Query:    80 ETPLHEACREGRLN-FVKLFVGIDPSVIYKL----NRDNESVLYVACERGRLDVAKQLLN 134
             +T LH A R G  +  V++      S + +L    N+  E+ LYVA E G +++ K+++N
Sbjct:    28 DTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAAEYGDVEIVKEMIN 87

Query:   135 YSSLLILEVDGLT--TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH 192
                L ++E+       + H++A  G LD++K L EA  E A   DL+  T LH + ++GH
Sbjct:    88 CYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSNTTALHTAATQGH 147

Query:   193 LEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVL 252
              E+                + G+T LH A+  G + +I  +L+     A      G+T L
Sbjct:   148 TEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTAL 207

Query:   253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG--VDV 310
             H+ VK    E V+ L++    +   N+ D  GNT LH+A A K  + ++ LL      D 
Sbjct:   208 HMAVKGTNVEVVEELIKADRSS--INIADTKGNTALHIA-ARKGRSQIVKLLLANNMTDT 264

Query:   311 NAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISA 370
              A+NR G TALD  E   +   AL     L++ G      + P  P+  + +  T     
Sbjct:   265 KAVNRSGETALDTAEKIGNPEVAL----ILQKHGVPSAKTIKPSGPNPARELKQTV---- 316

Query:   371 QSSIPXXXXXXXXXXXXXXXXXXXXXKQI-ELQTEGLRNARKXXXXXXXXXXXXXXXXGI 429
              S I                      KQ+ ++ TEGL NA                    
Sbjct:   317 -SDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIF 375

Query:   430 NPPGGF----NQV-SGKSL----VGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRK 480
               PG +    +++  G SL    +   T F +F + + +ALF+SL +V+   S++  + K
Sbjct:   376 TVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIESK 435

Query:   481 SMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGL 540
             +  Q++ V +++MWL+   ++ A++A  + ++  G    W++  V ++G   T+ I T L
Sbjct:   436 AKKQMMAVINKLMWLACVLISVAFLALSFVVV--GEEEKWLAIWVTAIGA--TIMITT-L 490

Query:   541 GVLLARHWL--RKWEWRKMKEKNRSPNSSIS 569
             G +   +W+   K E   ++   RS  +SIS
Sbjct:   491 GTMC--YWIIQHKIEAANLRNIRRSSINSIS 519

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 2.2e-40, P = 2.2e-40
 Identities = 130/509 (25%), Positives = 237/509 (46%)

Query:    80 ETPLHEACREGRLNFVKLFV---GID-PSVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
             ++ LH A R G L+ VK  +   G +   ++ K N + E+ LY A E G   V +++L +
Sbjct:   152 DSSLHIAARTGNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVEEMLKH 211

Query:   136 SSLLILEVDGLT--TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
               L    +         HV+A  GHL+++K LLE     A   DL+  T LH + ++GH+
Sbjct:   212 MDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQGHI 271

Query:   194 EITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH-GETVL 252
             ++                N G+T LH AA  G + ++  ++  +  S   RT   G+T L
Sbjct:   272 DVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKD-PSIGFRTDKKGQTAL 330

Query:   253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT-AGKLTTMVIYLLKLGVDVN 311
             H+ VK      V  L++  ++  L+ + DN GNT LH+AT  G++  +   +   G+++N
Sbjct:   331 HMAVKGQNDGIVVELVKP-DVAVLS-VEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLN 388

Query:   312 AINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQL-PPMSPHDIQPIGDTSPISA 370
              IN+ G T LDV E      G  ++V  L+EAGA     L  P +P   + +  T     
Sbjct:   389 PINKAGDTPLDVSEK----IGNAELVSVLKEAGAATAKDLGKPQNP--AKQLKQTV---- 438

Query:   371 QSSIPXXXXXXXXXXXXXXXXXXXXXKQIE-LQTEGLRNARKXXXXXXXXXXXXXXXXGI 429
              S I                      K+++ L   GL NA                    
Sbjct:   439 -SDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIF 497

Query:   430 NPPGGFNQ------VSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMM 483
               PG + +      + G++ +  +  F VF + + +ALF+SL +V+   S++  ++K+  
Sbjct:   498 TIPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKK 557

Query:   484 QLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVL 543
             +L+ V +++MW +  F++ A+++  + ++  G+  +W++     +GG   L     +   
Sbjct:   558 KLVFVINKLMWCACLFISIAFVSLSYIVV--GKEEMWLAVCATVIGGTIMLTTIGAMCYC 615

Query:   544 LARHWLRKWEWRKM-KEKNRSPNSSISRV 571
             +  H + + + R + KE+++S + S+SR+
Sbjct:   616 VVMHRMEESKLRSIRKERSKSQSFSMSRM 644

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 134/529 (25%), Positives = 233/529 (44%)

Query:    63 EILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYK-----LNRDNESVL 117
             EI K   + + A  +  +TPLH A REG+ + +   +G    V  K      N+  E+ L
Sbjct:     3 EIKKTMTKQMTARRD--DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETAL 60

Query:   118 YVACERGRLDVAKQLLNYSSLLILEVDGLT--TSLHVSAMAGHLDIVKELLEARQEFAWK 175
             YVA E G  D+ K L+ +S  ++          + H++A  G+L ++  L+EA  E ++ 
Sbjct:    61 YVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFT 120

Query:   176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
              D +  T LH + S+GH EI                + G+T LH AA  G   I+ +++ 
Sbjct:   121 FDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIE 180

Query:   236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 295
                         G+T LH+ VK    E V  LME      L N  DN GNT LH+A    
Sbjct:   181 KKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--SLINSADNKGNTPLHIAVRKN 238

Query:   296 LTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPM 354
                +V  +LK   V   A+N+ G TALD+ E     +G  +IVP L++ G +    + P 
Sbjct:   239 RAEIVQTVLKYCEVSRVAVNKSGETALDIAEK----TGLHEIVPLLQKIGMQNARSIKPA 294

Query:   355 SPHDIQPIGDTSPISAQ-SSIPXXXXXXXXXXXXXXXXXXXXXKQI-ELQTEGLRNARKX 412
                 ++P G +  +    S I                      K++ ++ TEGL NA   
Sbjct:   295 EK--VEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINS 352

Query:   413 XXXXXXXXXXXXXXXGINPPGGFNQVS---------GKSLVGKQTSFKVFMVCNIVALFL 463
                              N PG +             G++    +  F +F+V +  ALF+
Sbjct:   353 TTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFI 412

Query:   464 SLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSA 523
             SL +V+   S++  +R++  Q++ + +++MW++   ++ A+++  + ++  G     ++ 
Sbjct:   413 SLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVV--GEKEKPLAV 470

Query:   524 AVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVE 572
              V ++G    L + + LG +   +W+      +++    SP S +S  E
Sbjct:   471 GVTAIGA---LIMVSTLGTMC--YWVIA---NRIEGSKSSPASMMSDPE 511

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 144/542 (26%), Positives = 239/542 (44%)

Query:    31 QQDEAKIKQTVPGSLN-TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE 89
             Q  + K  + V G  N T LHL A+ G      +ILK   ++    N +ME  L      
Sbjct:    59 QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILK---DI----NSQMEGIL-----S 106

Query:    90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT-- 147
             G   F      I  S++ ++N   E+ L+ A ++G LDV K+LL YSS   +     +  
Sbjct:   107 GE-EFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGY 165

Query:   148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
               LH++A+ GH  IV+ LL+     +     +  TPL  +  +GH E+  +         
Sbjct:   166 DPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLL 225

Query:   208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
                 +  +  LH AA +G + +I  +LS + Q A      G+T LH+ VK    E VK L
Sbjct:   226 EISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLL 285

Query:   268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVES 326
             ++      +   PD   NT LH+AT  K   +V  LL L   + N + R   TALD+ E 
Sbjct:   286 LDA--DPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEG 343

Query:   327 DASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXX 386
                +  +  I   L  +GA R ++L        QP  +    S  + I            
Sbjct:   344 LPLSEESSYIKECLARSGALRANELN-------QPRDELR--STVTQIKNDVHIQLEQTK 394

Query:   387 XXXXXXXXXXKQI-ELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVSGKSLVG 445
                       K++ +L  EG+ NA                      PGG N   G ++V 
Sbjct:   395 RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNN-DGSAVVV 453

Query:   446 KQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYI 505
              + SFK+F + N +ALF SL +V+  ++++  + K+  +++ V +++MWL+    + A++
Sbjct:   454 GRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFL 513

Query:   506 AAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPN 565
             A+ + ++  GR   W +  V  +GG     I  G+   +  + ++    R M++K +S  
Sbjct:   514 ASSYIVV--GRKNEWAAELVTVVGG----VIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR 567

Query:   566 SS 567
              S
Sbjct:   568 RS 569

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 6.7e-39, P = 6.7e-39
 Identities = 134/513 (26%), Positives = 234/513 (45%)

Query:    80 ETPLHEACREGRLNFVKLFV----GIDP--SVIYKLNRDNESVLYVACERGRLDVAKQLL 133
             ++PLH A R G L  V   +    GI+    +  K N + E+ LY A E G   V +++L
Sbjct:   114 DSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVEEML 173

Query:   134 NYSSLLILEVDGLT--TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG 191
              +  L    V         HV+A  GH++ +K+LLE     A   DL+  T LH + S+G
Sbjct:   174 KHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHTAASQG 233

Query:   192 HLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH-GET 250
             H ++                N G+T LH AA  G   ++  ++  N  S   RT   G+T
Sbjct:   234 HTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIG-NDASIGFRTDKKGQT 292

Query:   251 VLHLTVKNNQYEAVKYLMETLNITK-LANMPDNDGNTILHLATAGKLTTMVIYLLKL-GV 308
              LH+ VK  Q E +  ++E +     + ++ D+ GNT LH AT      +V  L+   G+
Sbjct:   293 ALHMAVKG-QNEGI--VLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGI 349

Query:   309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQL-PPMSPHDIQPIGDTSP 367
             ++NA+N+ G TALD+ E      G  ++V  L+EAGA     L  P +P   + +  T  
Sbjct:   350 NLNAMNKAGDTALDIAEK----IGNPELVSVLKEAGAATAKDLGKPRNP--AKQLNQTV- 402

Query:   368 ISAQSSIPXXXXXXXXXXXXXXXXXXXXXKQIE-LQTEGLRNARKXXXXXXXXXXXXXXX 426
                 S I                      K+++ L   GL NA                 
Sbjct:   403 ----SDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFA 458

Query:   427 XGINPPGGFNQ--VSGKSLVGK-----QTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQR 479
                  PG + +    G  L+G+     +  F VF + + +ALF+SL +V+   S++  ++
Sbjct:   459 AIFTIPGQYEEDRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQ 518

Query:   480 KSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTG 539
             K+   L+ V +++MWL+  F++ A+++  + ++  G+  +W++     +GG   L     
Sbjct:   519 KAKKNLVFVINKLMWLACLFISVAFVSLSFIVV--GKEDIWLAICATIIGGTIMLTTIGA 576

Query:   540 LGVLLARHWLRKWEWRKM-KEKNRSPNSSISRV 571
             +   +  H + + + + + KE+++S + S+S +
Sbjct:   577 MCYCVVMHRIEESKLKSLRKERSKSKSFSLSHM 609

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 124/472 (26%), Positives = 221/472 (46%)

Query:   104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT--TSLHVSAMAGHLDI 161
             SV+ ++N   E+ L+ A E+G +DV K+LL Y+++  L    L+   +LH++   GH  I
Sbjct:   134 SVVNEVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSI 193

Query:   162 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWA 221
             V+ LLE   + +     +  TPL  + ++GH E+  E             + G+  LH A
Sbjct:   194 VQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLA 253

Query:   222 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 281
             A +G ++I+  +L  + Q A      G+T LH+ VK    + V+ L+       +  +PD
Sbjct:   254 ARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRA--DPAIVMLPD 311

Query:   282 NDGNTILHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGALQIVPAL 340
               GNT+LH+AT  K   +V  LL+L   +VNA+ R   TA D+ E    +    +I   L
Sbjct:   312 KFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEIL 371

Query:   341 EEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXXXXXXKQI- 399
                GA + ++L    P D   +  T      + I                      K++ 
Sbjct:   372 SRCGALKANELN--QPRD--ELRKTV-----TEIKKDVHTQLEQTRKTNKNVDGIAKELR 422

Query:   400 ELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIV 459
             +L   G+ NA                      PGG +   G +++   TSFK+F + N +
Sbjct:   423 KLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGGDDD-HGVAVMVHATSFKIFFIFNAI 481

Query:   460 ALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMV 519
             ALF SL +V+  ++++  + K+  +++ V +++MWL+      A+I++ + ++ R R   
Sbjct:   482 ALFTSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGR-RNRY 540

Query:   520 WVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWR--KMKEKNRSPNSSIS 569
               +A VV++ G  T+   TG+  ++  + ++    R  + KEK +S  +  S
Sbjct:   541 --AAVVVTVIGTVTM---TGILSIMTYYVVKSKRTRIVRKKEKKKSARNGTS 587

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032438001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (593 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	600
pfam13962	114	pfam13962, PGG, Domain of unknown function	9e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-06
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-04
smart00248	30	smart00248, ANK, ankyrin repeats	9e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  126 bits (320), Expect = 9e-35
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 404 EGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKS------LVGKQTSFKVFMVCN 457
           E L   R ++++VA LIATVTFAAG  PPGG+ Q  G        L GK   FK F V N
Sbjct: 2   EWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSN 61

Query: 458 IVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTI 511
            +A   SL  VI L+ I+P   + + +LL +   ++WLS+  L  A+ A  + +
Sbjct: 62  TIAFVASLVAVILLLYIVPSFSRRLPRLLAL-LTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (272), Expect = 5e-28
 Identities = 51/129 (39%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
           +D +G TPLHL+ S GHLE+ + LL+   D+ +  DN+GRTPLH AA  G + I+  +L 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 295
                   R   G T LHL  +N   + VK L   L      N  D DG T LHLA    
Sbjct: 62  -KGADVNARDKDGNTPLHLAARNGNLDVVKLL---LKHGADVNARDKDGRTPLHLAAKNG 117

Query: 296 LTTMVIYLL 304
              +V  LL
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (251), Expect = 3e-25
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 4/126 (3%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
           + D  + L++A   G L+V K LL   + +   + DG T  LH++A  GHL+IVK LLE 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRT-PLHLAAKNGHLEIVKLLLEK 62

Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN 228
                  +D +G+TPLHL+   G+L++ + LLK   D+ +  D +GRTPLH AA  G + 
Sbjct: 63  G-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLE 120

Query: 229 IIDEIL 234
           ++  +L
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.4 bits (204), Expect = 8e-19
 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
            T LHL A  GH E+   +L+     V A++    TPLH A + G L  VKL +     V
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGA-DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL 165
               ++D  + L++A   G LDV K LL + + +        T LH++A  GHL++VK L
Sbjct: 67  -NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 166 L 166
           L
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 209
           LH++A  G+L++VK LLE   +          T LHL+   G+LEI + LL+   D+++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 210 PDNEGRTPLHWAAIKGRINIIDEILS 235
            D +G T LH AA  G + I+  +L 
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
            R   G T LHL   N   E VK L+E        N  DNDG T LHLA       +V  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 303 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQ 350
           LL+ G DVNA ++ G T L +    A+ +G L +V  L + GA    +
Sbjct: 59  LLEKGADVNARDKDGNTPLHL----AARNGNLDVVKLLLKHGADVNAR 102

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTS--LHVSAMAGHLDIVKELLEARQEFAW 174
           L++A + G L++ K LL   +    +V+   T   LH++A  G+L+IVK LLE   +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA----DVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN- 55

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
            KD +G+T LHL+   G+LEI + LL+   D++
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.4 bits (174), Expect = 6e-14
 Identities = 62/229 (27%), Positives = 89/229 (38%), Gaps = 35/229 (15%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDG-LTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
           L +      L +   LL  S  L    D  L   L ++ +         L          
Sbjct: 9   LLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAA 68

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
           +DL+G  PLH + SKG  +I + LL    D+++  D +G TPLH AA+ G          
Sbjct: 69  RDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNP-------- 119

Query: 236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 295
                                     E  K L+E      + N+ D DGNT LH A    
Sbjct: 120 ---------------------PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158

Query: 296 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG 344
              +V  LL+ G D N+ N  G TALD     A+ +G +++V  L + G
Sbjct: 159 DADIVELLLEAGADPNSRNSYGVTALD----PAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 4e-13
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 277
           LH AA  G + ++  +L      A++     +T LHL  +N   E VK L   L      
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLL---LEHGADV 54

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
           N  D DGNT LHLA       +V  LL+ G D+N  +
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 1e-12
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 32/160 (20%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
            PLH A  +G    VKL +     V  K + D ++ L++A   G                
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPP------------- 120

Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRE 198
                           G++++ K LLE  A  +    +D +G+TPLH +   G  +I   
Sbjct: 121 ---------------EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Query: 199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           LL+   D +S  ++ G T L  AA  GRI ++  +L   L
Sbjct: 166 LLEAGADPNSR-NSYGVTALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 83  LHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
           LH A + G L  VKL +  G D ++      D ++ L++A   G L++ K LL + + + 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL-----GDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEA 168
            +     T+LH++A  G+L+IVK LLE 
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.8 bits (162), Expect = 2e-12
 Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 22/191 (11%)

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDG--------LTTSLHVSA 154
            S+      D +           L +         LL L VD             LH +A
Sbjct: 27  LSLDLSNPSDKKL-----NLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAA 81

Query: 155 MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL-----EITRELLKL--DPDLS 207
             G   IVK LL +  +    KD +G TPLHL+   G+      E+ + LL+   D D++
Sbjct: 82  SKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN 140

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
           +L D +G TPLHWAA+ G  +I++ +L         R  +G T L    KN + E VK L
Sbjct: 141 NLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Query: 268 METLNITKLAN 278
           ++      L  
Sbjct: 200 LDKGLHLSLLK 210

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 252 LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 311
           LHL  KN   E VK L+E     K A++   D +T LHLA       +V  LL+ G DVN
Sbjct: 1   LHLAAKNGNLELVKLLLE-----KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 312 AINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           A ++ G TAL +    A+ +G L+IV  L E GA
Sbjct: 56  AKDKDGNTALHL----AARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 31/239 (12%)

Query: 76  NEKMETPLHEACREGRLNFVKLFV--GIDPSV--------------------IYKLNRDN 113
           N K+  PL  A + G  + +KL +  G+D S+                    +   + + 
Sbjct: 65  NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAEL 124

Query: 114 ESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFA 173
           ++ L+ A ++G L+  K L  Y + + +E D     +H++      DI+K LLE +  +A
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYA 183

Query: 174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 233
             KD NG +PLH +   G     + L+     + +     G TPLH A I  R  I  E+
Sbjct: 184 NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN-KCKNGFTPLHNAIIHNRSAI--EL 240

Query: 234 LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL-ANMPDNDGNTILHLA 291
           L +N  S   + I G T LH  +          +++ L   K   ++ DN G   +  A
Sbjct: 241 L-INNASINDQDIDGSTPLHHAI---NPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 5e-10
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 23/237 (9%)

Query: 62  SEILKLCPEMVAAENEK---METPLHEACREGRLNFVKLFVGIDP---SVIYKLNRDNES 115
           SE +KL  +  A  + K   +E+ LH+A  EG +  V+  + +      V YK   D  +
Sbjct: 48  SEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYK---DGMT 104

Query: 116 VLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
            L++A    +LD+ K L+   +   +      + LH++ M G +  ++ L++ +     +
Sbjct: 105 PLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE 164

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP----LHWAAIKGRINIID 231
            D  G TPL ++ +KG + I + LL    D  +  D  G+      L +A    +I+I+ 
Sbjct: 165 -DCCGCTPLIIAMAKGDIAICKMLL----DSGANIDYFGKNGCVAALCYAIENNKIDIVR 219

Query: 232 EILSLNLQSAEMRTIHGE--TVLHLTVK---NNQYEAVKYLMETLNITKLANMPDND 283
             +        M  I GE  T+L +      N + EA+  L+  + I         D
Sbjct: 220 LFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALIADIAIRIHKKTIRRD 276

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 37/291 (12%)

Query: 59  ELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESV 116
           E   +I+K     +    ++  TPL +A R G    V+LF+  G D   I  +N      
Sbjct: 15  EAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD---INHINTKIPHP 71

Query: 117 LYVACERGRLDVAKQLLNY---SSLL------------ILE--VD------GLTTSLHVS 153
           L  A + G  D+ K L++    +S+L            IL+  +D       L T LH +
Sbjct: 72  LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYA 131

Query: 154 AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE 213
              G L+ +K L E   +    +D NG  P+H++      +I + LL+     +++ DN 
Sbjct: 132 IKKGDLESIKMLFEYGADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNN 189

Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           G +PLH AA  G    I  ++  +      +  +G T LH  + +N+  A++ L+   +I
Sbjct: 190 GESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINNASI 247

Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVI-YLLKLGVDVNAINRKGYTALDV 323
               N  D DG+T LH A        +I  LL    D++  + KG   +D 
Sbjct: 248 ----NDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294

Length = 434

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           N  D DG T LHLA +     +V  LL+ G DVNA +  G T L +    A+ +G L+IV
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHL----AAKNGHLEIV 56

Query: 338 PALEEAGA 345
             L E GA
Sbjct: 57  KLLLEKGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 37/241 (15%)

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH---- 158
             +     +     LY+A E   +DV K LL+  + +       +T LH  +   +    
Sbjct: 25  DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTD 84

Query: 159 -LDIVKELLEARQEFAWKKDLNGHTPLH--LSCSKGHLEITRELLKLDPDLSSLPDNEGR 215
             +IVK LLE         D NG TPL   +S       I   LL    +++   +++G 
Sbjct: 85  VKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK-NSDGE 142

Query: 216 TPLHWAAIKGR---------------INIIDEI---LSLNLQSAEMRTIHGETVLHLTVK 257
             LH      +               IN  + +   LS  +    ++ ++G T LH  V 
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGV-PINIKDVYGFTPLHYAVY 201

Query: 258 NNQYEAVKYLME---TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
           NN  E VKYL++     N+       +  G+T LH+A       +   LL  G  +  I 
Sbjct: 202 NNNPEFVKYLLDLGANPNLV------NKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII 255

Query: 315 R 315
            
Sbjct: 256 E 256

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 180 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII 230
           G T LH +   G LE+ + LL+   D+ +  D +G T LH AA  G + ++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVL 50

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 19/207 (9%)

Query: 148 TSLHV--SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLH--LSCSKGHLEITRELLKLD 203
           T LHV  S    +  +++ LL    +     DL G TPL   L     ++E+ R L+   
Sbjct: 119 TPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAG 177

Query: 204 PDLSSLPDNEGRTPLHWAA--IKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY 261
            D+ ++ D+  R+ LH      K R  I+ E++      A    + G T LH     +  
Sbjct: 178 ADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA-TDMLGNTPLHSMATGSSC 235

Query: 262 EA---VKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY 318
           +    +  L+  ++I    N  +  G T LH A           L+ LG D+NA++  G 
Sbjct: 236 KRSLVLPLLIAGISI----NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN 291

Query: 319 TALD---VVESDASNSGALQIVPALEE 342
           T L       +  +   AL   P+ E 
Sbjct: 292 TPLSLMVRNNNGRAVRAALAKNPSAET 318

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 154 AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE 213
           A  G+  +++ELL+A+ +     D  G TPLH++ SKG+ +    LLK   ++  + D  
Sbjct: 533 ASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDAN 590

Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH-GETVLHLTVKNNQYEAVKYLMET-L 271
           G T L W AI  + + I  IL      A +   H    +L    K N   A+K L++  L
Sbjct: 591 GNTAL-WNAISAKHHKIFRIL---YHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGL 646

Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
           N+    +  D+ G T L +A A     MV  L+  G DV+  N
Sbjct: 647 NV----DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 322
             N  D +GNT LHLA       +V +LLK GVD+N  +  G TALD
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA 221
           LLE         D NG+TPLHL+   G LE+ + LLK   DL +L D++G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL 200
            T+LH +A++G L++VK LLE   +   + D +G+T LH++   G+LE+ + LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 186 LSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM-- 243
           L+ S   +E  R LL    D++      G+TPLH         + D +  L    A++  
Sbjct: 20  LNASNVTVEEVRRLLAAGADVN-FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 244 RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLT--TM 299
               G T LHL + N     V   ++ L I   A  N  D  G T LH+  +G      +
Sbjct: 79  PERCGFTPLHLYLYNATTLDV---IKLL-IKAGADVNAKDKVGRTPLHVYLSGFNINPKV 134

Query: 300 VIYLLKLGVDVNAINRKGYTALDV 323
           +  LL+ G DVNA++  G T L V
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 30/255 (11%)

Query: 81  TPLHEACREGRLNFVKLFVG--IDPSVIYKLNRDNESVLYVACERGRLDVAKQLL----- 133
           TPLH  C+E     +K  +      SV Y L    +     A     +++ K +L     
Sbjct: 72  TPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKD-----AFNNRNVEIFKIILTNRYK 126

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
           N  ++ ++ +D  +    + A     +I K LL    +   K    G+T LH +      
Sbjct: 127 NIQTIDLVYIDKKSKDDIIEA-----EITKLLLSYGADINMKDRHKGNTALHYATENKDQ 181

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
            +T  LL    +++  PD    +PLH  A+K     I  IL  N  S + R   G T LH
Sbjct: 182 RLTELLLSYGANVNI-PDKTNNSPLH-HAVKHYNKPIVHILLENGASTDARDKCGNTPLH 239

Query: 254 LTVKN-NQYEAVKYLME---TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 309
           ++V     Y+ +K L+E    +N           G T LH +   +    +  LL+ G D
Sbjct: 240 ISVGYCKDYDILKLLLEHGVDVNAKSYIL-----GLTALHSSIKSERKLKL--LLEYGAD 292

Query: 310 VNAINRKGYTALDVV 324
           +N++N    T L   
Sbjct: 293 INSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 57/290 (19%)

Query: 75  ENEKME-TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC-ERGRLDVAKQL 132
           ENE +  T +H+A +  +++ V+  +  +P +IY  +    S L+  C     +D+   L
Sbjct: 36  ENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISL 95

Query: 133 ---------LNYSSLLILEVDGLTTSLHV--SAMAG---HLDIVKELLEARQEFAWKKDL 178
                    + Y+S+++ +       +H+   A++G   H D + E +E  +    +   
Sbjct: 96  TLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKER--- 152

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
                      +  L I   LL+   D+++  D    TP+H+AA +G   +++ +LS   
Sbjct: 153 ---------IQQDELLIAEMLLEGGADVNA-KDIYCITPIHYAAERGNAKMVNLLLSYG- 201

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL-NITK---------------------- 275
               +  +   +VL   V +   + +K +++   NI K                      
Sbjct: 202 ADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYD 261

Query: 276 ---LANMPDNDGNTILHLAT-AGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
                N  D+  NT LH A+ A  L+ +V  LL+ G DVNA N KG T L
Sbjct: 262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 14  LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVA 73
           L      G+ +    L+++  A +     G  +T LHL AR G+ E+   +L+   ++ A
Sbjct: 1   LHLAAKNGNLELVKLLLEK-GADVNL---GDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSV 105
            + +   T LH A R G L  VKL +  G D ++
Sbjct: 57  KDKDGN-TALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 83/312 (26%), Positives = 126/312 (40%), Gaps = 78/312 (25%)

Query: 72  VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           V A++    TP+H A   G    V L +  G D ++I     D+ SVL  A +   +D  
Sbjct: 171 VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNII---ALDDLSVLECAVDSKNIDTI 227

Query: 130 KQLLN---------------------YSSLLILEV--------DGLTTSLHVSAMAGHLD 160
           K +++                      +SLL+ +         D   T LH ++ A  L 
Sbjct: 228 KAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS 287

Query: 161 -IVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-LEITRELLKLDPDL------------ 206
            +V +LLE R      K++ G TPL+L    G+  E  R L+ L  D+            
Sbjct: 288 RLVPKLLE-RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH 346

Query: 207 --SSLPDNEG-------------------RTPLHWAAIKGRINIIDEILSLNLQSAEMRT 245
             S+L  N+                    +TP+H+AA++  + II+ +L        +  
Sbjct: 347 QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ 406

Query: 246 IHGETVLHLTV-KNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVI-Y 302
             G T LH  +   N Y +VK L++   N+    N  + D +T LH A        VI  
Sbjct: 407 KIG-TALHFALCGTNPYMSVKTLIDRGANV----NSKNKDLSTPLHYACKKNCKLDVIEM 461

Query: 303 LLKLGVDVNAIN 314
           LL  G DVNAIN
Sbjct: 462 LLDNGADVNAIN 473

Length = 682

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 41/182 (22%)

Query: 172 FAWKKDLNG---------------HTPLHLSC---SKGHLEITRELLKLDPDLSSLPDNE 213
           +  K D+ G                TP+  SC    K ++EI + L++   D++    + 
Sbjct: 28  YVEKDDIEGVKKWIKFVNDCNDLYETPIF-SCLEKDKVNVEILKFLIENGADVNFKTRDN 86

Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQS-AEMRTIH--GETVLH--LTVKNNQYEAVKYLM 268
             + LH      + N+  EIL + + S + +      G+ +LH  +   N +   +K L+
Sbjct: 87  NLSALHHYLSFNK-NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI 145

Query: 269 ETLNITKLANMP---DNDGNTILH----LATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
           +              D D N IL+      +  K+     +L  LG+D+N  N+ GY   
Sbjct: 146 D------SGVSFLNKDFDNNNILYSYILFHSDKKI---FDFLTSLGIDINETNKSGYNCY 196

Query: 322 DV 323
           D+
Sbjct: 197 DL 198

Length = 209

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 189 SKGHLEITRELLK--LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 246
           S G+  +  ELLK  LDPD+    D++GRTPLH AA KG  + +  +L  +  +  +R  
Sbjct: 534 STGNAALLEELLKAKLDPDIG---DSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDA 589

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
           +G T L   +    ++  + L    +I+     P   G+ +   A    LT M   LLK 
Sbjct: 590 NGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMK-ELLKQ 644

Query: 307 GVDVNAINRKGYTALDV 323
           G++V++ + +G TAL V
Sbjct: 645 GLNVDSEDHQGATALQV 661

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 46/232 (19%)

Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-----LEITRELLK 201
              L+++  A ++D+VK LL+   +       N  TPLH   +  +      EI + LL+
Sbjct: 36  VLPLYLAKEARNIDVVKILLDNGADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE 94

Query: 202 LDPDLSSLPDNEGRTPLHWAAIK--GRINIIDEILSLNLQSAEMR--TIHGETVLHLTVK 257
              ++++ PDN G TPL +A  K     +I++ +L      A +      GE +LHL ++
Sbjct: 95  YGANVNA-PDNNGITPLLYAISKKSNSYSIVEYLLDNG---ANVNIKNSDGENLLHLYLE 150

Query: 258 NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG 317
           +N+ +        L I KL      D N              V YLL  GV +N  +  G
Sbjct: 151 SNKID--------LKILKLLIDKGVDINAK----------NRVNYLLSYGVPINIKDVYG 192

Query: 318 YTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPIS 369
           +T L      A  +   + V  L + GA         +P+ +   GDT P+ 
Sbjct: 193 FTPLH----YAVYNNNPEFVKYLLDLGA---------NPNLVNKYGDT-PLH 230

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 21/159 (13%)

Query: 175 KKDLNGHTPLHLSCSKG---HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 231
            KD  G TPLH+    G   + ++ R LL+   D+++L D  G TPL         N+  
Sbjct: 112 AKDKVGRTPLHV-YLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANV-- 167

Query: 232 EILSLNLQ-SAEMRT--IHGETVLH---LTVKNNQYEAVKYLMETLNITKLANMPDNDGN 285
           E+L L +   A++        ++LH    + K       + + E +         D  GN
Sbjct: 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA----RIVRELIRAGCDPAATDMLGN 223

Query: 286 TILHLATAG---KLTTMVIYLLKLGVDVNAINRKGYTAL 321
           T LH    G   K + ++  L+  G+ +NA NR G T L
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPL 261

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 24/245 (9%)

Query: 113 NESVLY---VACERGRLDVAKQLLNYSSLLILEVDGLTTSLHV---SAMAGHLDIVKELL 166
            E+ LY   +      ++  ++LL   + +    +   T LH+    +     DIV+ LL
Sbjct: 11  MEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL 70

Query: 167 EARQEFAWKKDLNGHTPLHL-SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG 225
           EA  +     +  G TPLHL   +   L++ + L+K   D+++  D  GRTPLH      
Sbjct: 71  EAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA-KDKVGRTPLHVYLSGF 128

Query: 226 RIN--IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ--YEAVKYLMETLNITKLANM-- 279
            IN  +I  +L           ++G T L + +K+     E ++ L     I   A++  
Sbjct: 129 NINPKVIRLLLRKGA-DVNALDLYGMTPLAVLLKSRNANVELLRLL-----IDAGADVYA 182

Query: 280 PDNDGNTILH--LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
            D+   ++LH  L +      +V  L++ G D  A +  G T L  + + +S      ++
Sbjct: 183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS-CKRSLVL 241

Query: 338 PALEE 342
           P L  
Sbjct: 242 PLLIA 246

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
           +D +G TPLH++C+ GH+++ R LL+   D + L D +G+TPL  A   G   ++  +  
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLD--PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
           +G +P+ L+      E  + L+K    PD+   PD    + LH A  +G +  ++E+L L
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY-PDI--ESELHDAVEEGDVKAVEELLDL 90

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 296
              + ++    G T LHL     + + +K L+         ++P+ D  + LHLA     
Sbjct: 91  GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP---DIPNTDKFSPLHLAVMMGD 147

Query: 297 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
              +  L+     ++  +  G T L +    A   G + I   L ++GA
Sbjct: 148 IKGIELLIDHKACLDIEDCCGCTPLII----AMAKGDIAICKMLLDSGA 192

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
           GRT LH AAI GR+ ++  +L   +         G T LH+  +N   E +K L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL 254
           LL+  P   +  D  G TPLH AA  G + ++  +L   +    +R   G T L L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV-DLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 44  SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV---- 99
                LH  A  G +++   +L    + V A++   +TPLH A   G      + V    
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130

Query: 100 ---GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA 156
              G D  V    + D  + L+ A   G  D+ + LL   +          T+L  +A  
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN 190

Query: 157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           G +++VK LL+     +  K             +  L +T  ++ 
Sbjct: 191 GRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           N  D DG T LH+A A     +V  LL+ G D   +++ G T L++    A  +G  ++V
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLEL----AEENGFREVV 164

Query: 338 PAL-------EEAGARRCDQLPPMSPHDIQPIGDTSPISAQ----SSIPR 376
             L        E GA       P S     P  + SPIS+     S++P+
Sbjct: 165 QLLSRHSQCHFELGANA----KPDSFTGKPPSLEDSPISSHHPDFSAVPQ 210

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
           T LH+A   GRL  VK  +  G+D   I + + D  + L++A E G L+V K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD---INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA 291
           +L            +G T LHL  K    E V++L   L      N+ D+DG T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWL---LKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDL 206
           +G+TPLHL+   GHLE+ + LL+   D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 283 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINR 315
           DGNT LHLA       +V  LL+ G DVNA ++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 62  SEILKLCPEMVAAENEKME----TPLHEAC--REGRLNFVKLFVGIDPSVIYKLNRDNES 115
           +EI KL     A  N K      T LH A   ++ RL  + L  G + ++    ++ N S
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI---PDKTNNS 203

Query: 116 VLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVS-AMAGHLDIVKELLEARQEFAW 174
            L+ A +     +   LL   +          T LH+S       DI+K LLE   +   
Sbjct: 204 PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI 229
           K  + G T LH S         + LL+   D++SL ++   TPL  +A+K  + I
Sbjct: 264 KSYILGLTALHSSIKSE--RKLKLLLEYGADINSL-NSYKLTPLS-SAVKQYLCI 314

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 31/186 (16%)

Query: 160 DIVKEL--LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 217
            I+K +  ++  + ++    L    PLH +    +L++ + LL    +++  PD+   TP
Sbjct: 15  TILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQ-PDHRDLTP 73

Query: 218 LHWAAIKGRINIIDEILSLNLQ---SAEMRTIH----------GETVLHLTVKNNQYEAV 264
           LH    +     + E++    +      +  I            + +L    KN Q   +
Sbjct: 74  LHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDL 133

Query: 265 KYLMET-------LNITKL-------ANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVD 309
            Y+ +          ITKL        NM D + GNT LH AT  K   +   LL  G +
Sbjct: 134 VYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN 193

Query: 310 VNAINR 315
           VN  ++
Sbjct: 194 VNIPDK 199

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 115 SVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELL 166
           + L+ A   GRL++ K LL    + I   D    T+LH++A  G+L+++K LL
Sbjct: 3   TALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDL 206
           +G TPLHL+   G+LE+ + LL    D+
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS 136
            TPLH AC  G +  V++ +  G DP++   L++D ++ L +A E G  +V + L  +S
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGADPTL---LDKDGKTPLELAEENGFREVVQLLSRHS 171

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 213 EGRTPLHWAAIKGRINIIDEILS 235
           +G TPLH AA  G + ++  +L 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDL 206
           +G+TPLHL+   G+LE+ + LL+   D+
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	600
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.98
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02741	169	hypothetical protein; Provisional	99.77
PHA02743	166	Viral ankyrin protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.56
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.38
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.36
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.29
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.25
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.15
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.14
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.13
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.08
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.05
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.95
PF13606	30	Ank_3: Ankyrin repeat	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.65
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.43
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.42
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.42
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.33
PF13606	30	Ank_3: Ankyrin repeat	98.32
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.3
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.25
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.22
KOG0522	560	consensus Ankyrin repeat protein [General function	98.21
KOG0522	560	consensus Ankyrin repeat protein [General function	98.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.07
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.0
KOG2384	223	consensus Major histocompatibility complex protein	97.72
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.68
KOG0511	516	consensus Ankyrin repeat protein [General function	97.6
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.49
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.49
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.32
KOG2384	223	consensus Major histocompatibility complex protein	97.21
KOG0511	516	consensus Ankyrin repeat protein [General function	97.17
KOG2505	591	consensus Ankyrin repeat protein [General function	96.94
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.48
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.38
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.91
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.95
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.86
KOG2505	591	consensus Ankyrin repeat protein [General function	93.31
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.42
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	91.84
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.43
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.46
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.38

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-42  Score=356.31  Aligned_cols=314  Identities=26%  Similarity=0.353  Sum_probs=272.4

Q ss_pred             ccCccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhH
Q 007515            5 AINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLH   84 (600)
Q Consensus         5 ~~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh   84 (600)
                      +.+......|+.|+..+-++.++.+++.+...  ...+..+.+|||+|+..|+.+..+.|++++.+ ++..|+.|.||||
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~--~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh  159 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLSYGADT--PLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLH  159 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHhcCCCC--ChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhh
Confidence            34566778889999999999999999887654  34566789999999999999999999999966 8999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHh-----CCcccccccCCCChHHHHHHhcCCH
Q 007515           85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLN-----YSSLLILEVDGLTTSLHVSAMAGHL  159 (600)
Q Consensus        85 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~-----~~~~~~~~~~~~~t~Lh~A~~~g~~  159 (600)
                      +||+.++.|..+.|++.++++ .+.|.+|.+|+|.|+.+|..|+.+..+.     ....++..+.++.+|||.|+..|+.
T Consensus       160 ~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~  238 (929)
T KOG0510|consen  160 LAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDI  238 (929)
T ss_pred             HHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCH
Confidence            999999999889999999887 5568999999999999999999999988     5566777788888999999999999


Q ss_pred             HHHHHHHhcCccc--------------cccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          160 DIVKELLEARQEF--------------AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       160 ~~v~~Ll~~~~~~--------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      ++++.+|+.+...              .+..|.+|+||||+||+.|+.+.++.|+..|+++.. ++.++.||||.||..|
T Consensus       239 e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~-kn~d~~spLH~AA~yg  317 (929)
T KOG0510|consen  239 EMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS-KNKDEESPLHFAAIYG  317 (929)
T ss_pred             HHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc-cCCCCCCchHHHHHcc
Confidence            9999999876533              245788999999999999999999999999999876 7889999999999999


Q ss_pred             CHHHHHHHHh-ccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH
Q 007515          226 RINIIDEILS-LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  304 (600)
Q Consensus       226 ~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  304 (600)
                      +.+.++.||+ .+....+..|..|.||||+|+++|+..+++.|++++.........|.+|+||||+|+..|+..+|+.|+
T Consensus       318 ~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li  397 (929)
T KOG0510|consen  318 RINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLI  397 (929)
T ss_pred             cHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHH
Confidence            9999999999 454566778889999999999999999999999984332111156999999999999999999999999


Q ss_pred             hcCCCcccccCCCCCHHHH
Q 007515          305 KLGVDVNAINRKGYTALDV  323 (600)
Q Consensus       305 ~~gad~n~~n~~G~T~l~~  323 (600)
                      .+||++..+|++|.|++|+
T Consensus       398 ~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  398 SHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HcCCceeeccccccccccc
Confidence            9999999999999999995

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.4e-41  Score=356.79  Aligned_cols=304  Identities=19%  Similarity=0.243  Sum_probs=261.2

Q ss_pred             HcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCC--HHHHH
Q 007515           19 LRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGR--LNFVK   96 (600)
Q Consensus        19 ~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~--~~iv~   96 (600)
                      ..++.+.++.+++.+.+.  ...+..|.||||+||..|+.++|++|++.+++ ++.+|..|.||||+|+..++  .++++
T Consensus        48 ~~~~~~iv~~Ll~~Gadv--n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~  124 (446)
T PHA02946         48 KGLDERFVEELLHRGYSP--NETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERIN  124 (446)
T ss_pred             cCCCHHHHHHHHHCcCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHH
Confidence            455778899998887653  44677899999999999999999999999987 78999999999999988764  89999


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC--HHHHHHHHhcCccccc
Q 007515           97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH--LDIVKELLEARQEFAW  174 (600)
Q Consensus        97 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~  174 (600)
                      +|++.++++....+..|.|||+ |+..|+.+++++|++.+.+.+..+..|.||||.|+..++  .+++++|++.+.++. 
T Consensus       125 lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-  202 (446)
T PHA02946        125 LLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-  202 (446)
T ss_pred             HHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-
Confidence            9999999987777899999997 677799999999999999999888899999999887654  689999999999887 


Q ss_pred             cCCCCCChHHHHHHhcC--cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhccccc-----------
Q 007515          175 KKDLNGHTPLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR-INIIDEILSLNLQS-----------  240 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~-~~~v~~Ll~~~~~~-----------  240 (600)
                      .+|.+|.||||+|+..+  +.+++++|++ +++++. +|..|.||||+|+..++ .++++.|++.+...           
T Consensus       203 ~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~-~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~  280 (446)
T PHA02946        203 KPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNK-QNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFY  280 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCC-CCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHc
Confidence            78999999999999986  7899999985 788765 79999999999999988 58888888876321           


Q ss_pred             --------cccc-cccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          241 --------AEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       241 --------~~~~-~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                              .... +..|+||||+|+++|+.+++++|+++          +.+|.||||+|+..++.+++++|+.+|+++|
T Consensus       281 ~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~----------~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n  350 (446)
T PHA02946        281 DRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN----------DIICEDAMYYAVLSEYETMVDYLLFNHFSVD  350 (446)
T ss_pred             CchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC----------CCccccHHHHHHHhCHHHHHHHHHHCCCCCC
Confidence                    0111 13477999999999999999999986          3468999999999999999999999999999


Q ss_pred             cccCCCCCHHHHHhhhcCCcchhhHHHHHHHhc
Q 007515          312 AINRKGYTALDVVESDASNSGALQIVPALEEAG  344 (600)
Q Consensus       312 ~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~g  344 (600)
                      .. ..|.||+++|    ...++.++++.|+.+.
T Consensus       351 ~~-~~G~t~l~~a----~~~~~~~~~~~ll~~~  378 (446)
T PHA02946        351 SV-VNGHTCMSEC----VRLNNPVILSKLMLHN  378 (446)
T ss_pred             Cc-cccccHHHHH----HHcCCHHHHHHHHhcC
Confidence            96 5899999995    4567788999888754

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=354.38  Aligned_cols=313  Identities=23%  Similarity=0.270  Sum_probs=273.9

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE   89 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~   89 (600)
                      |+..|..|+..||.+.++.+++.++..++ ..+..|.||||.|++.|+.++|++|++.|++ ++..+..|.||||.|+..
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n-~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCIN-ISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKI   78 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence            45689999999999999999987765433 3456789999999999999999999999987 788899999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcC
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR  169 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~  169 (600)
                      |+.+++++|++.+++...           .+......++++.|++.+.+++..+..|.||||.|+..|+.++++.|++.+
T Consensus        79 ~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g  147 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG  147 (434)
T ss_pred             CCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC
Confidence            999999999998876521           233446789999999999999988888999999999999999999999999


Q ss_pred             ccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccc
Q 007515          170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE  249 (600)
Q Consensus       170 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  249 (600)
                      +++. ..|..|.||||+|+..|+.+++++|++.|+++.. .+..|.||||+|+..|+.+++++|++.+. .....+..|.
T Consensus       148 ad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~-~i~~~~~~g~  224 (434)
T PHA02874        148 ADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-KDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCKNGF  224 (434)
T ss_pred             CCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCC
Confidence            9886 7789999999999999999999999999998765 78899999999999999999999999884 5677888999


Q ss_pred             chhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC-cHHHHHHHHhcCCCcccccCCCCCHHHHHhhhc
Q 007515          250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK-LTTMVIYLLKLGVDVNAINRKGYTALDVVESDA  328 (600)
Q Consensus       250 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a  328 (600)
                      ||||.|+..+. +++++|+.    +..+|.+|.+|+||||+|+..+ +.+++++|+++|+|++.+|..|.|||++|....
T Consensus       225 TpL~~A~~~~~-~~i~~Ll~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        225 TPLHNAIIHNR-SAIELLIN----NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             CHHHHHHHCCh-HHHHHHHc----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            99999999876 56666663    4568999999999999999875 789999999999999999999999999976432


Q ss_pred             CCcchhhHHHHHHHhccc
Q 007515          329 SNSGALQIVPALEEAGAR  346 (600)
Q Consensus       329 ~~~~~~~i~~~L~~~ga~  346 (600)
                         ....+++.|+..++.
T Consensus       300 ---~~~~~ik~ll~~~~~  314 (434)
T PHA02874        300 ---NKDPVIKDIIANAVL  314 (434)
T ss_pred             ---CccHHHHHHHHhcCc
Confidence               234577888877753

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-41  Score=376.01  Aligned_cols=330  Identities=24%  Similarity=0.278  Sum_probs=261.2

Q ss_pred             CccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHH---------------------------------
Q 007515            7 NPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTA---------------------------------   53 (600)
Q Consensus         7 ~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa---------------------------------   53 (600)
                      +....++||.|+..|..|.|+.+++++|... ...+..|.||||+|+                                 
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~-~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELI-YITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccc-hhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            4556788888888888888888888887633 345667888888655                                 


Q ss_pred             -------------------------------------HhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHH
Q 007515           54 -------------------------------------RFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVK   96 (600)
Q Consensus        54 -------------------------------------~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~   96 (600)
                                                           ..|+.+++++|++.|.+ ++.+|..|.||||+||..|+.++|+
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~  195 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVN  195 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                                                 45677888888888877 7788888888888888888888888


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCc-----------------------------ccccccCCCC
Q 007515           97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS-----------------------------LLILEVDGLT  147 (600)
Q Consensus        97 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~-----------------------------~~~~~~~~~~  147 (600)
                      +|++.|+++. ..+..|.||||+|+..|+.+++++|++.+.                             +++..+..|.
T Consensus       196 ~LL~~Gad~n-~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~  274 (682)
T PHA02876        196 LLLSYGADVN-IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN  274 (682)
T ss_pred             HHHHCCCCcC-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            8888888764 346778888888888888887777765443                             2333345577


Q ss_pred             hHHHHHHhcCCH-HHHHHHHhcCccccccCCCCCChHHHHHHhcC-cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc-
Q 007515          148 TSLHVSAMAGHL-DIVKELLEARQEFAWKKDLNGHTPLHLSCSKG-HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK-  224 (600)
Q Consensus       148 t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~-  224 (600)
                      ||||.|+..++. ++++.|++.+.++. ..|.+|.||||+|+..| +.++++.|+..|+++.. .|..|.||||.|+.. 
T Consensus       275 TpLh~Aa~~~~~~~iv~lLl~~gadin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~-~d~~g~TpLh~A~~~~  352 (682)
T PHA02876        275 TPLHHASQAPSLSRLVPKLLERGADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQASTLD  352 (682)
T ss_pred             CHHHHHHhCCCHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC-cccCCCcHHHHHHHhC
Confidence            888888888875 57888888887765 67888888888888888 58888888888888765 688888888888875 


Q ss_pred             CCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCc-HHHHHHH
Q 007515          225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL-TTMVIYL  303 (600)
Q Consensus       225 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-~~iv~~L  303 (600)
                      ++.++++.|++.+ ..++.+|..|.||||+|+..++.+++++|++.   +.+++..+..|.||||+|+..++ ..++++|
T Consensus       353 ~~~~iv~lLl~~g-adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L  428 (682)
T PHA02876        353 RNKDIVITLLELG-ANVNARDYCDKTPIHYAAVRNNVVIINTLLDY---GADIEALSQKIGTALHFALCGTNPYMSVKTL  428 (682)
T ss_pred             CcHHHHHHHHHcC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCccccCCCCCchHHHHHHcCCHHHHHHHH
Confidence            4677777777765 56778888899999999999999999999887   56678888889999999887654 5678888


Q ss_pred             HhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          304 LKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       304 l~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      ++.|+++|.+|..|+|||++|...   ....+++++|++.|++..
T Consensus       429 l~~gadin~~d~~G~TpLh~Aa~~---~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        429 IDRGANVNSKNKDLSTPLHYACKK---NCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             HhCCCCCCcCCCCCChHHHHHHHh---CCcHHHHHHHHHCCCCCC
Confidence            899999999999999999997542   235679999999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8e-40  Score=366.97  Aligned_cols=323  Identities=21%  Similarity=0.228  Sum_probs=285.2

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC
Q 007515           11 ERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG   90 (600)
Q Consensus        11 ~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g   90 (600)
                      ...+..++..|+.+.++.+++.+.+.  ...+..|.||||+||..|+.++|++|++.|++ ++..+..|.||||+|+..|
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~Gadv--n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~~  222 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGGADV--NAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSK  222 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHcC
Confidence            45678889999999999999888664  34577899999999999999999999999988 7888999999999999999


Q ss_pred             CHHHHHHHHhCCccc----------------------------ccccCCCCCcHHHHHHHhCCH-HHHHHHHhCCccccc
Q 007515           91 RLNFVKLFVGIDPSV----------------------------IYKLNRDNESVLYVACERGRL-DVAKQLLNYSSLLIL  141 (600)
Q Consensus        91 ~~~iv~~Ll~~~~~~----------------------------~~~~~~~g~tpL~~A~~~g~~-e~v~~Ll~~~~~~~~  141 (600)
                      +.++++.|++.++++                            ....+..|.||||+|+..|+. +++++|++.+.+++.
T Consensus       223 ~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~  302 (682)
T PHA02876        223 NIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA  302 (682)
T ss_pred             CHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC
Confidence            999999888765432                            223467899999999999986 699999999999998


Q ss_pred             ccCCCChHHHHHHhcC-CHHHHHHHHhcCccccccCCCCCChHHHHHHhc-CcHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 007515          142 EVDGLTTSLHVSAMAG-HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK-GHLEITRELLKLDPDLSSLPDNEGRTPLH  219 (600)
Q Consensus       142 ~~~~~~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~  219 (600)
                      .+..|.||||.|+..| +.++++.|+..+.++. ..|..|.||||+|+.. ++.++++.|++.|+++.. +|..|.||||
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~-~d~~G~TpLh  380 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVN-AADRLYITPLHQASTLDRNKDIVITLLELGANVNA-RDYCDKTPIH  380 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC-CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc-CCCCCCCHHH
Confidence            8889999999999999 5999999999998887 7899999999999985 578999999999999866 7999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCc-hhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC-cH
Q 007515          220 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ-YEAVKYLMETLNITKLANMPDNDGNTILHLATAGK-LT  297 (600)
Q Consensus       220 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~-~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~-~~  297 (600)
                      +|+..|+.++++.|++.+ ...+..+..|.||||+|+..++ ..++++|++.   +.++|.+|.+|+||||+|+..+ +.
T Consensus       381 ~Aa~~~~~~iv~~Ll~~g-ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~---gadin~~d~~G~TpLh~Aa~~~~~~  456 (682)
T PHA02876        381 YAAVRNNVVIINTLLDYG-ADIEALSQKIGTALHFALCGTNPYMSVKTLIDR---GANVNSKNKDLSTPLHYACKKNCKL  456 (682)
T ss_pred             HHHHcCCHHHHHHHHHCC-CCccccCCCCCchHHHHHHcCCHHHHHHHHHhC---CCCCCcCCCCCChHHHHHHHhCCcH
Confidence            999999999999999988 5677788899999999997665 5678999887   6779999999999999999876 68


Q ss_pred             HHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          298 TMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       298 ~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      +++++|++.|+|+|.+|..|.||+++|...      .++++.|+..|++..
T Consensus       457 ~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~------~~~v~~Ll~~~a~~~  501 (682)
T PHA02876        457 DVIEMLLDNGADVNAINIQNQYPLLIALEY------HGIVNILLHYGAELR  501 (682)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHh------CCHHHHHHHCCCCCC
Confidence            999999999999999999999999997642      258899999988654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.1e-40  Score=340.44  Aligned_cols=300  Identities=24%  Similarity=0.318  Sum_probs=273.6

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      ..|..++|+||+|+.....+.++.|++.+++ ...+|.++.+|+|+|+..|+.+..+.|++.+.+++ ..+..+.||||+
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad-~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn-l~de~~~TpLh~  160 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLSYGAD-TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN-LEDENGFTPLHL  160 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHhcCCC-CChhhhhccCchhhccccchHHHHHHHHHhcCCcc-ccccCCCchhhH
Confidence            3466789999999999999999999999998 88999999999999999999999999999997774 458999999999


Q ss_pred             HHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHh-----cCccccccCCCCCChHHHHHHhcCcHH
Q 007515          120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE-----ARQEFAWKKDLNGHTPLHLSCSKGHLE  194 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~-----~~~~~~~~~d~~g~tpLh~A~~~g~~~  194 (600)
                      ||..++.|..+.|++.++++...+..+..|+|.|++.|..++.+.++.     +...++ ..+..|.||||.|+..|+.+
T Consensus       161 A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n~~~~pLhlAve~g~~e  239 (929)
T KOG0510|consen  161 AARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNNEKATPLHLAVEGGDIE  239 (929)
T ss_pred             HHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cccCCCCcchhhhhhcCCHH
Confidence            999999998899999999999888889999999999999999999998     333443 56778999999999999999


Q ss_pred             HHHHHHhcCCCCCC--------------CCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCc
Q 007515          195 ITRELLKLDPDLSS--------------LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ  260 (600)
Q Consensus       195 iv~~Ll~~~~~~~~--------------~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~  260 (600)
                      +++..|+.+.....              ..|++|.||||+|++.|+.+.++.|+..+ .+++.++.++.||||.|+.+|+
T Consensus       240 ~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G-a~I~~kn~d~~spLH~AA~yg~  318 (929)
T KOG0510|consen  240 MLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG-ASINSKNKDEESPLHFAAIYGR  318 (929)
T ss_pred             HHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC-CcccccCCCCCCchHHHHHccc
Confidence            99999998875432              25889999999999999999999999988 6899999999999999999999


Q ss_pred             hhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc---cccCCCCCHHHHHhhhcCCcchhhHH
Q 007515          261 YEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN---AINRKGYTALDVVESDASNSGALQIV  337 (600)
Q Consensus       261 ~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n---~~n~~G~T~l~~a~~~a~~~~~~~i~  337 (600)
                      .+.++-|++ .....++|..|..|+||||+|++.|+..++++|++.||+.+   ..|.+|.||||+    |..+++..++
T Consensus       319 ~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~----Aa~~g~~~av  393 (929)
T KOG0510|consen  319 INTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHL----AAKYGNTSAV  393 (929)
T ss_pred             HHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhH----HHHhccHHHH
Confidence            999999999 45566899999999999999999999999999999999988   569999999999    5567888999


Q ss_pred             HHHHHhccccc
Q 007515          338 PALEEAGARRC  348 (600)
Q Consensus       338 ~~L~~~ga~~~  348 (600)
                      +.|+.+||+..
T Consensus       394 ~~Li~~Ga~I~  404 (929)
T KOG0510|consen  394 QKLISHGADIG  404 (929)
T ss_pred             HHHHHcCCcee
Confidence            99999999873

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.5e-39  Score=348.30  Aligned_cols=322  Identities=18%  Similarity=0.181  Sum_probs=252.0

Q ss_pred             HcCCHHHHHHHHhhc-hhhhhccCCCCCCcHHHHHHH--hCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCC--HH
Q 007515           19 LRGDTQAFLSLIQQD-EAKIKQTVPGSLNTILHLTAR--FGHEELASEILKLCPEMVAAENEKMETPLHEACREGR--LN   93 (600)
Q Consensus        19 ~~gd~~~~~~ll~~~-~~~l~~~~~~~g~T~Lh~Aa~--~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~--~~   93 (600)
                      ..++.+.++.+++.+ .+ ++...+..|.||||.|+.  +++.+++++|++.|++ ++.+|..|.||||+|++.|+  .+
T Consensus       151 ~~v~leiVk~LLe~G~AD-IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVN-LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             cCCCHHHHHHHHHCCCCC-cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHH
Confidence            458999999999987 44 444447789999999865  4679999999999988 88999999999999999995  59


Q ss_pred             HHHHHHhCCcccccccCCCCCcHHHHHH---HhCCHHHHHHHHhCCcccccccCCCChHHH---HHHhcCCHHHHHHHHh
Q 007515           94 FVKLFVGIDPSVIYKLNRDNESVLYVAC---ERGRLDVAKQLLNYSSLLILEVDGLTTSLH---VSAMAGHLDIVKELLE  167 (600)
Q Consensus        94 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~---~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh---~A~~~g~~~~v~~Ll~  167 (600)
                      +|++|++.|+++. .++..|.||||.|+   ..++.++++.|++........  ....+++   .|+..|+.++++.|++
T Consensus       229 IVklLLe~GADVN-~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        229 VIKKIIELGGDMD-MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             HHHHHHHcCCCCC-CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHh
Confidence            9999999999875 45899999999875   467888888888764332111  1112333   4678888899999998


Q ss_pred             cCccccccCCCCCChHHHHHHh--cCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH--------------cCCHHHHH
Q 007515          168 ARQEFAWKKDLNGHTPLHLSCS--KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAI--------------KGRINIID  231 (600)
Q Consensus       168 ~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~--------------~g~~~~v~  231 (600)
                      .+++++ .+|.+|+||||+|+.  .++.+++++|++.|+++.. +|..|+||||+|+.              .++.++++
T Consensus       306 ~GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~-kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVk  383 (764)
T PHA02716        306 PGVKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE-PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ  383 (764)
T ss_pred             CCCcee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc-CCCCCCCHHHHHHHhhhhhccccccccccChHHHHH
Confidence            888876 678888999988764  4578889999988888755 78888999988765              36788888


Q ss_pred             HHHhccccccccccccccchhhH----hHhcCchhHHHHHHHhccc----------------------------------
Q 007515          232 EILSLNLQSAEMRTIHGETVLHL----TVKNNQYEAVKYLMETLNI----------------------------------  273 (600)
Q Consensus       232 ~Ll~~~~~~~~~~~~~g~t~Lh~----Av~~~~~~iv~~Ll~~~~~----------------------------------  273 (600)
                      .|++.+ .+++.+|..|+||||.    |...+..+++++|++....                                  
T Consensus       384 lLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~  462 (764)
T PHA02716        384 CLISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTD  462 (764)
T ss_pred             HHHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchh
Confidence            888877 5677888889999983    2234667888887764210                                  


Q ss_pred             ------------------------ccccCCCCCCCChHhHHHHhCCcH-----HHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          274 ------------------------TKLANMPDNDGNTILHLATAGKLT-----TMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       274 ------------------------~~~~n~~d~~G~T~Lh~A~~~~~~-----~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                                              ....|..|..|+||||+|+..|+.     +++++|++.|+|+|.+|++|+|||++|
T Consensus       463 ~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A  542 (764)
T PHA02716        463 LYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLT  542 (764)
T ss_pred             hhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHH
Confidence                                    012366788999999999998876     456999999999999999999999998


Q ss_pred             hhhcCC-cchhhHHHHHHHhccccc
Q 007515          325 ESDASN-SGALQIVPALEEAGARRC  348 (600)
Q Consensus       325 ~~~a~~-~~~~~i~~~L~~~ga~~~  348 (600)
                      ...... ..+.++++.|++.|+...
T Consensus       543 ~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        543 MRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             HHcCCccccHHHHHHHHHhcCCCcc
Confidence            765432 335689999999987644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8e-39  Score=337.69  Aligned_cols=311  Identities=18%  Similarity=0.187  Sum_probs=263.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHH--hCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC
Q 007515           13 HLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTAR--FGHEELASEILKLCPEMVAAENEKMETPLHEACREG   90 (600)
Q Consensus        13 ~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~--~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g   90 (600)
                      .+|.++..++.+.++.+++..       .+..+.++||.++.  .++.++|++|++.+.+ ++.+|..|.||||+|+..|
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~-------~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g   83 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI-------EPSGNYHILHAYCGIKGLDERFVEELLHRGYS-PNETDDDGNYPLHIASKIN   83 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc-------CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCC-CCccCCCCCCHHHHHHHcC
Confidence            468889999999999888642       12234799998774  4568999999999988 8999999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC--CHHHHHHHHhCCccccc-ccCCCChHHHHHHhcCCHHHHHHHHh
Q 007515           91 RLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG--RLDVAKQLLNYSSLLIL-EVDGLTTSLHVSAMAGHLDIVKELLE  167 (600)
Q Consensus        91 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~e~v~~Ll~~~~~~~~-~~~~~~t~Lh~A~~~g~~~~v~~Ll~  167 (600)
                      +.++|++|+++|+++. .+|..|.||||+|+..+  ..+++++|+++|++++. .+..+.|||| |+..++.++++.|++
T Consensus        84 ~~eiv~lLL~~GAdin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~  161 (446)
T PHA02946         84 NNRIVAMLLTHGADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS  161 (446)
T ss_pred             CHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh
Confidence            9999999999998885 56999999999998876  48999999999999884 4677888998 666789999999999


Q ss_pred             cCccccccCCCCCChHHHHHHhcC--cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcccccccc
Q 007515          168 ARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINIIDEILSLNLQSAEM  243 (600)
Q Consensus       168 ~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~  243 (600)
                      .+.+.. ..|..|+||||+|+..+  +.+++++|++.|+++.. +|.+|.||||+|+..|  +.++++.|+. + .+++.
T Consensus       162 ~gad~~-~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~-~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~  237 (446)
T PHA02946        162 IGFEAR-IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK-PDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNK  237 (446)
T ss_pred             cccccc-ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCC
Confidence            998876 78999999999998755  46899999999999865 7999999999999986  8899999885 4 67889


Q ss_pred             ccccccchhhHhHhcCc-hhHHHHHHHhcccc-----------------cccCCC-CCCCChHhHHHHhCCcHHHHHHHH
Q 007515          244 RTIHGETVLHLTVKNNQ-YEAVKYLMETLNIT-----------------KLANMP-DNDGNTILHLATAGKLTTMVIYLL  304 (600)
Q Consensus       244 ~~~~g~t~Lh~Av~~~~-~~iv~~Ll~~~~~~-----------------~~~n~~-d~~G~T~Lh~A~~~~~~~iv~~Ll  304 (600)
                      +|..|+||||+|++.++ .+++++|++.....                 ..++.. +..|.||||+|+..|+.+++++|+
T Consensus       238 ~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll  317 (446)
T PHA02946        238 QNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLL  317 (446)
T ss_pred             CCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999988 58999998864310                 012222 246889999999999999999999


Q ss_pred             hcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          305 KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       305 ~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      ++|+       .|.|||++|.    ..++.+++++|+.+|++..
T Consensus       318 ~~~~-------~~~t~L~~A~----~~~~~~~v~~Ll~~ga~~n  350 (446)
T PHA02946        318 DNDI-------ICEDAMYYAV----LSEYETMVDYLLFNHFSVD  350 (446)
T ss_pred             HCCC-------ccccHHHHHH----HhCHHHHHHHHHHCCCCCC
Confidence            9875       5799999964    4568899999999998855

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=342.24  Aligned_cols=305  Identities=21%  Similarity=0.169  Sum_probs=267.8

Q ss_pred             ccCccccHHHHHH---HHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhC---CHHHHHHHHHhCchhhhccCCC
Q 007515            5 AINPYMERHLFET---ILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFG---HEELASEILKLCPEMVAAENEK   78 (600)
Q Consensus         5 ~~~~~~~~~L~~A---~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g---~~e~v~~Ll~~~~~~l~~~n~~   78 (600)
                      ..+..+...|+..   ...++.+.++.+++.+.+.  ...+..|.||||+|+..|   +.++++.|++.|++ ++.++..
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~v~~Ll~~ga~v--n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~   82 (471)
T PHA03095          6 SVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADV--NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERC   82 (471)
T ss_pred             hhhhhhHHHHHHHHHcCCCCCHHHHHHHHHcCCCc--ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCC
Confidence            3444566666665   5678999999999887663  345678999999999999   99999999999988 8889999


Q ss_pred             CCcHhHHHHHcC-CHHHHHHHHhCCcccccccCCCCCcHHHHHH--HhCCHHHHHHHHhCCcccccccCCCChHHHHHHh
Q 007515           79 METPLHEACREG-RLNFVKLFVGIDPSVIYKLNRDNESVLYVAC--ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAM  155 (600)
Q Consensus        79 g~TpLh~Aa~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~  155 (600)
                      |.||||+|+..| +.+++++|++.|+++. ..+..|.||||+|+  ..++.+++++|+++|++++..+..|.||||.|+.
T Consensus        83 g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~  161 (471)
T PHA03095         83 GFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK  161 (471)
T ss_pred             CCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            999999999999 5999999999999874 45889999999999  5678999999999999999888889999999988


Q ss_pred             cC--CHHHHHHHHhcCccccccCCCCCChHHHHHHhc--CcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH--HH
Q 007515          156 AG--HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK--GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI--NI  229 (600)
Q Consensus       156 ~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~--~~  229 (600)
                      .+  +.++++.|++.+.+.... |..|.||||+++..  ++.++++.|++.|+++.. +|..|.||||+|+..|+.  .+
T Consensus       162 ~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~-~d~~g~tpLh~Aa~~~~~~~~~  239 (471)
T PHA03095        162 SRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA-TDMLGNTPLHSMATGSSCKRSL  239 (471)
T ss_pred             cCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCchHHH
Confidence            76  689999999999998844 89999999999875  788999999999999866 899999999999999975  57


Q ss_pred             HHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       230 v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                      ++.+++.+ ..++.+|..|+||||+|+..|+.+++++|++.   ++++|.+|.+|+||||+|+..++.++++.|++.+++
T Consensus       240 v~~ll~~g-~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        240 VLPLLIAG-ISINARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             HHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            77888776 57888899999999999999999999999987   678999999999999999999999999999999999


Q ss_pred             cccccCCCCC
Q 007515          310 VNAINRKGYT  319 (600)
Q Consensus       310 ~n~~n~~G~T  319 (600)
                      ++.......+
T Consensus       316 ~~~~~~~~~~  325 (471)
T PHA03095        316 AETVAATLNT  325 (471)
T ss_pred             HHHHHHHHHH
Confidence            9876554333

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.3e-38  Score=337.82  Aligned_cols=316  Identities=21%  Similarity=0.238  Sum_probs=259.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhchhh--hhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC
Q 007515           13 HLFETILRGDTQAFLSLIQQDEAK--IKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG   90 (600)
Q Consensus        13 ~L~~A~~~gd~~~~~~ll~~~~~~--l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g   90 (600)
                      .||.++..++.+.+.+.++.-...  .....+..+.||||.||..|+.++|++|++.+.+ ++.+|..|.||||+||..|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCc
Confidence            688999999988888887762111  1122334578999999999999999999999987 8899999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcC--CHHHHHHHHhc
Q 007515           91 RLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG--HLDIVKELLEA  168 (600)
Q Consensus        91 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~  168 (600)
                      +.++++.|++.+....   ...+.+|++.|+..++.++++.|+..+.......+  ...+......+  +.++++.|++.
T Consensus        82 ~~~~v~~Ll~~~~~~~---~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~  156 (477)
T PHA02878         82 NKLGMKEMIRSINKCS---VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSY  156 (477)
T ss_pred             cHhHHHHHHHHHhccc---cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHc
Confidence            9999999998765432   25678999999999999999999987543221111  00111111122  34699999999


Q ss_pred             CccccccCCCC-CChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Q 007515          169 RQEFAWKKDLN-GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH  247 (600)
Q Consensus       169 ~~~~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  247 (600)
                      +++++ ..|.. |.||||+|+..|+.+++++|++.|+++.. .|..|.||||.|+..|+.++++.|++.+ ..++.+|..
T Consensus       157 gadin-~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~in~~d~~  233 (477)
T PHA02878        157 GADIN-MKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENG-ASTDARDKC  233 (477)
T ss_pred             CCCCC-ccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCC
Confidence            99987 66766 99999999999999999999999999865 7899999999999999999999999987 578889999


Q ss_pred             ccchhhHhHhc-CchhHHHHHHHhcccccccCCCCC-CCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHh
Q 007515          248 GETVLHLTVKN-NQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE  325 (600)
Q Consensus       248 g~t~Lh~Av~~-~~~~iv~~Ll~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~  325 (600)
                      |+||||+|+.. ++.+++++|++.   +.++|.++. .|+||||+|  .++.+++++|+++|+|+|.+|..|.|||++|.
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~---gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEH---GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHc---CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999976 789999999998   667888876 799999999  56789999999999999999999999999987


Q ss_pred             hhcCCcchhhHHHHHHHhcc
Q 007515          326 SDASNSGALQIVPALEEAGA  345 (600)
Q Consensus       326 ~~a~~~~~~~i~~~L~~~ga  345 (600)
                      ..   ....++.+.|+..+.
T Consensus       309 ~~---~~~~~~~~~li~~~~  325 (477)
T PHA02878        309 KQ---YLCINIGRILISNIC  325 (477)
T ss_pred             HH---cCccchHHHHHHHHH
Confidence            53   223456666666543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=335.72  Aligned_cols=286  Identities=23%  Similarity=0.225  Sum_probs=259.0

Q ss_pred             HHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC---CHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC-C
Q 007515           50 HLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG---RLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG-R  125 (600)
Q Consensus        50 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~  125 (600)
                      ..|+..++.++|++|++.+.+ ++.++..|.||||+|+..|   +.+++++|++.|+++.. .+..|.||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~-~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA-PERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCc
Confidence            557788999999999999988 7899999999999999999   99999999999999854 4779999999999999 5


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHH--hcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC--cHHHHHHHHh
Q 007515          126 LDVAKQLLNYSSLLILEVDGLTTSLHVSA--MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLK  201 (600)
Q Consensus       126 ~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~  201 (600)
                      .+++++|+++|++++..+..|.||||.|+  ..++.++++.|++.+.++. ..|..|.||||+|+..+  +.++++.|++
T Consensus        97 ~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         97 LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999988888999999999  5668999999999999887 78999999999998876  6899999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhccccccccccccccchhhHhHhcCch--hHHHHHHHhccccccc
Q 007515          202 LDPDLSSLPDNEGRTPLHWAAIK--GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY--EAVKYLMETLNITKLA  277 (600)
Q Consensus       202 ~~~~~~~~~d~~g~tpL~~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~--~iv~~Ll~~~~~~~~~  277 (600)
                      .|+++... |..|.||||.|+..  ++.++++.|++.+ .+++.+|..|.||||+|+..++.  .+++.|++.   +.++
T Consensus       176 ~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~---g~di  250 (471)
T PHA03095        176 AGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA---GISI  250 (471)
T ss_pred             cCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc---CCCC
Confidence            99998774 89999999999875  7889999999987 57788999999999999999875  577777776   6789


Q ss_pred             CCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       278 n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      |.+|.+|+||||+|+..|+.+++++|++.|+|+|.+|.+|.||+++|.    ..++.++++.|++.+++.
T Consensus       251 n~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~----~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        251 NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV----RNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HhCCHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999999999999999964    456788999999988654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=335.33  Aligned_cols=284  Identities=23%  Similarity=0.322  Sum_probs=254.6

Q ss_pred             CHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHH-----HHHcCCHHHHH
Q 007515           22 DTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHE-----ACREGRLNFVK   96 (600)
Q Consensus        22 d~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~-----Aa~~g~~~iv~   96 (600)
                      ..+.++.+++++  .+....+..+.||||.|+..|+.++|++|++.|.+ ++..+..|.||||+     |+..|+.++++
T Consensus        14 ~~~~~~~~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~   90 (480)
T PHA03100         14 KVKNIKYIIMED--DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVK   90 (480)
T ss_pred             HHHHHHHHHhcC--ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHH
Confidence            345566666543  23344567789999999999999999999999987 78888899999999     99999999999


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHH--HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcC--CHHHHHHHHhcCccc
Q 007515           97 LFVGIDPSVIYKLNRDNESVLYVAC--ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG--HLDIVKELLEARQEF  172 (600)
Q Consensus        97 ~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~~~~~  172 (600)
                      +|++.|+++ ...+..|.||||+|+  ..|+.+++++|+++|.+++..+..|.||||.|+..+  +.++++.|++.++++
T Consensus        91 ~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di  169 (480)
T PHA03100         91 LLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI  169 (480)
T ss_pred             HHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc
Confidence            999999998 667899999999999  999999999999999999888888999999999999  999999999999988


Q ss_pred             cccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCC------CCHHHHHHHcCC--HHHHHHHHhccccccccc
Q 007515          173 AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEG------RTPLHWAAIKGR--INIIDEILSLNLQSAEMR  244 (600)
Q Consensus       173 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g------~tpL~~Aa~~g~--~~~v~~Ll~~~~~~~~~~  244 (600)
                      . ..|..|.||||+|+..|+.+++++|+++|+++.. .+..|      .||||.|+..|+  .++++.|++.+ .+++.+
T Consensus       170 n-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~  246 (480)
T PHA03100        170 N-AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA-GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIK  246 (480)
T ss_pred             c-cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC-CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCC
Confidence            6 6788999999999999999999999999999865 66777      899999999999  99999999987 567788


Q ss_pred             cccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccC
Q 007515          245 TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  315 (600)
Q Consensus       245 ~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~  315 (600)
                      |..|.||||+|+..++.+++++|++.   ++++|.+|.+|.||||+|+..++.+++++|+++|++++..+.
T Consensus       247 d~~g~TpL~~A~~~~~~~iv~~Ll~~---gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~~  314 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEFVKYLLDL---GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE  314 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHHH
Confidence            89999999999999999999999987   567899999999999999999999999999999999887654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.5e-36  Score=329.33  Aligned_cols=324  Identities=18%  Similarity=0.153  Sum_probs=255.7

Q ss_pred             ccccc-CccccHHHHHHHH--cCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCC--HHHHHHHHHhCchhhhccC
Q 007515            2 EIEAI-NPYMERHLFETIL--RGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGH--EELASEILKLCPEMVAAEN   76 (600)
Q Consensus         2 e~~~~-~~~~~~~L~~A~~--~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~--~e~v~~Ll~~~~~~l~~~n   76 (600)
                      |++.. +..+..+|+.|+.  .++.+.++.+++.+.+.  ...+..|.||||+|+..|+  .++|+.|++.|++ ++.+|
T Consensus       168 DIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV--N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD  244 (764)
T PHA02716        168 NLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV--NLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKC  244 (764)
T ss_pred             CcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCC
Confidence            45555 6778899998764  46889999999887653  3457789999999999996  5999999999988 89999


Q ss_pred             CCCCcHhHHHH---HcCCHHHHHHHHhCCcccccccCCCCCcHHH---HHHHhCCHHHHHHHHhCCcccccccCCCChHH
Q 007515           77 EKMETPLHEAC---REGRLNFVKLFVGIDPSVIYKLNRDNESVLY---VACERGRLDVAKQLLNYSSLLILEVDGLTTSL  150 (600)
Q Consensus        77 ~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~---~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~L  150 (600)
                      ..|.||||+|+   ..++.++++.|++......   ......+++   .|+..|+.+++++|+++|++++..+..|.|||
T Consensus       245 ~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~---~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPL  321 (764)
T PHA02716        245 VNGMSPIMTYIINIDNINPEITNIYIESLDGNK---VKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCL  321 (764)
T ss_pred             CCCCCHHHHHHHhhhccCHHHHHHHHHhccccc---cccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHH
Confidence            99999999885   5678999999987532211   011122333   47888999999999999999888888888999


Q ss_pred             HHHHh--cCCHHHHHHHHhcCccccccCCCCCChHHHHHHh--------------cCcHHHHHHHHhcCCCCCCCCCCCC
Q 007515          151 HVSAM--AGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS--------------KGHLEITRELLKLDPDLSSLPDNEG  214 (600)
Q Consensus       151 h~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--------------~g~~~iv~~Ll~~~~~~~~~~d~~g  214 (600)
                      |.|+.  .++.+++++|++.+.++. .+|..|+||||+|+.              .++.+++++|+++|+++.. .|..|
T Consensus       322 H~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~-kn~~G  399 (764)
T PHA02716        322 HQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA-VNCLG  399 (764)
T ss_pred             HHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC-cCCCC
Confidence            98764  457899999999988876 788899999998865              3678999999999998865 78899


Q ss_pred             CCHHHH----HHHcCCHHHHHHHHhcccc---------------------------------------------------
Q 007515          215 RTPLHW----AAIKGRINIIDEILSLNLQ---------------------------------------------------  239 (600)
Q Consensus       215 ~tpL~~----Aa~~g~~~~v~~Ll~~~~~---------------------------------------------------  239 (600)
                      .||||.    |...++.++++.|++.+..                                                   
T Consensus       400 ~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v  479 (764)
T PHA02716        400 YTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDV  479 (764)
T ss_pred             CChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchh
Confidence            999984    2334678888888774310                                                   


Q ss_pred             ---------ccccccccccchhhHhHhcCchh-----HHHHHHHhcccccccCCCCCCCChHhHHHHhCCcH-----HHH
Q 007515          240 ---------SAEMRTIHGETVLHLTVKNNQYE-----AVKYLMETLNITKLANMPDNDGNTILHLATAGKLT-----TMV  300 (600)
Q Consensus       240 ---------~~~~~~~~g~t~Lh~Av~~~~~~-----iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-----~iv  300 (600)
                               ..+..|..|+||||+|+.+|+.+     ++++|++.   ++++|.+|++|+||||+|+++|+.     ++|
T Consensus       480 ~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIv  556 (764)
T PHA02716        480 YHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMRNNRLSGHQWYIV  556 (764)
T ss_pred             hHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHHcCCccccHHHHH
Confidence                     11234668999999999998874     55999987   778999999999999999999966     999


Q ss_pred             HHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          301 IYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       301 ~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      +.|++.|++++...      +.+    +...++.++...|...|+.
T Consensus       557 k~LL~~ga~~~~~~------l~~----~~~~~~~~~~~ll~~~~~~  592 (764)
T PHA02716        557 KNILDKRPNVDIVI------IFL----DKCYANGKFPSLLLSEDDI  592 (764)
T ss_pred             HHHHhcCCCcchHH------HHH----HhhhhhhHHHHHHHHcchh
Confidence            99999999999883      555    3445566788888877764

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8e-37  Score=330.18  Aligned_cols=281  Identities=25%  Similarity=0.284  Sum_probs=255.6

Q ss_pred             CCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH-----HHHhCCHHHHH
Q 007515           56 GHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV-----ACERGRLDVAK  130 (600)
Q Consensus        56 g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~-----A~~~g~~e~v~  130 (600)
                      ...++++++++.+ +.....+..+.||||.|+..|+.++|++|++.|+++. ..+..+.||||+     |+..|+.++++
T Consensus        13 ~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~-~~~~~~~t~L~~~~~~~a~~~~~~~iv~   90 (480)
T PHA03100         13 IKVKNIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVK   90 (480)
T ss_pred             HHHHHHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC-CccccCcCHHHHHHHHHHHhhchHHHHH
Confidence            4457788888665 4577788999999999999999999999999998874 447889999999     99999999999


Q ss_pred             HHHhCCcccccccCCCChHHHHHH--hcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC--cHHHHHHHHhcCCCC
Q 007515          131 QLLNYSSLLILEVDGLTTSLHVSA--MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLDPDL  206 (600)
Q Consensus       131 ~Ll~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~  206 (600)
                      +|+++|++++..+..|.||||.|+  ..|+.++++.|++.+.++. ..|..|.||||+|+..|  +.+++++|+++|+++
T Consensus        91 ~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di  169 (480)
T PHA03100         91 LLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI  169 (480)
T ss_pred             HHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc
Confidence            999999999888888999999999  9999999999999998876 78889999999999999  999999999999998


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc------cchhhHhHhcCc--hhHHHHHHHhcccccccC
Q 007515          207 SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG------ETVLHLTVKNNQ--YEAVKYLMETLNITKLAN  278 (600)
Q Consensus       207 ~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g------~t~Lh~Av~~~~--~~iv~~Ll~~~~~~~~~n  278 (600)
                      .. .+..|.||||+|+..|+.++++.|++.+ ...+..+..|      .||||.|+..++  .+++++|++.   +.++|
T Consensus       170 n~-~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~---g~din  244 (480)
T PHA03100        170 NA-KNRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY---GVPIN  244 (480)
T ss_pred             cc-ccCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc---CCCCC
Confidence            65 6789999999999999999999999988 4566677777      899999999999  9999999997   66789


Q ss_pred             CCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          279 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       279 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      .+|..|+||||+|+..++.+++++|++.|+|+|.+|..|.||+++|..    .++.+++++|++.|++..
T Consensus       245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        245 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHH
Confidence            999999999999999999999999999999999999999999999654    567889999999998643

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-36  Score=319.14  Aligned_cols=332  Identities=18%  Similarity=0.164  Sum_probs=211.9

Q ss_pred             ccCccccHHHHHHHHcC---CHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhC--CHHHHHHHHHhCch-hhhccCCC
Q 007515            5 AINPYMERHLFETILRG---DTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFG--HEELASEILKLCPE-MVAAENEK   78 (600)
Q Consensus         5 ~~~~~~~~~L~~A~~~g---d~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g--~~e~v~~Ll~~~~~-~l~~~n~~   78 (600)
                      ..+..+.++|+.|+..|   +.+.++.|++.+.+.  ...|..|.||||+|+..|  +.|+|++|++.+.. ..+..+..
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi--n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER--LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC--cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            44567889999999997   599999999888664  355788999999999977  79999999998642 14456666


Q ss_pred             CCcHhHHHHH--cCCHHHHHHHHh-CCccccccc----CCCCCcHHHHHHHhCCHHHHHHHHhCCcccc--------ccc
Q 007515           79 METPLHEACR--EGRLNFVKLFVG-IDPSVIYKL----NRDNESVLYVACERGRLDVAKQLLNYSSLLI--------LEV  143 (600)
Q Consensus        79 g~TpLh~Aa~--~g~~~iv~~Ll~-~~~~~~~~~----~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~--------~~~  143 (600)
                      +++|||.++.  +++.++|++|++ .+.++....    +..|.+|++++...++.|+|++|+++|++++        .+.
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~  193 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDS  193 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccC
Confidence            7888888877  778888888885 333332221    2367788888888888888888888887763        222


Q ss_pred             CCCChHHHHHH------hcCCHHHHHHHHhcCccccccCCCCCChHHHH--HHhcCcHHHHHHHHh--------------
Q 007515          144 DGLTTSLHVSA------MAGHLDIVKELLEARQEFAWKKDLNGHTPLHL--SCSKGHLEITRELLK--------------  201 (600)
Q Consensus       144 ~~~~t~Lh~A~------~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~--A~~~g~~~iv~~Ll~--------------  201 (600)
                      ....|.||+++      ..++.++++.|+++|++++ .+|.+|+||||+  ++..++.|++++|++              
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN-~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~  272 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH-GRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQP  272 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccch
Confidence            33344556443      3456778888888887776 677788888874  444455666666666              


Q ss_pred             ------------------cCCC----------------------------------------------------------
Q 007515          202 ------------------LDPD----------------------------------------------------------  205 (600)
Q Consensus       202 ------------------~~~~----------------------------------------------------------  205 (600)
                                        +|.+                                                          
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~  352 (672)
T PHA02730        273 YIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLH  352 (672)
T ss_pred             hhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHh
Confidence                              3333                                                          


Q ss_pred             -------------------CCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhcccc-ccccccccccchhhH---hHhc
Q 007515          206 -------------------LSSLPDNEGRTPLHWAAIKGR----INIIDEILSLNLQ-SAEMRTIHGETVLHL---TVKN  258 (600)
Q Consensus       206 -------------------~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~~~~~-~~~~~~~~g~t~Lh~---Av~~  258 (600)
                                         ++.  +..|.||||+|+..++    .++++.|++++.. +++..|..|.||||.   |...
T Consensus       353 ~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        353 YGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             cCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhc
Confidence                               221  1345566666555553    5666666665532 345555556666652   2212


Q ss_pred             C---------chhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccC-CCCCHHHHHhhhc
Q 007515          259 N---------QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINR-KGYTALDVVESDA  328 (600)
Q Consensus       259 ~---------~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~-~G~T~l~~a~~~a  328 (600)
                      +         ..+++++|+..   ++++|.+|..|+||||+|+..++.+++++|+++||++|.+|. .|.||++.|..  
T Consensus       431 n~~~~~~e~~~~~ivk~LIs~---GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~--  505 (672)
T PHA02730        431 NCGYHCYETILIDVFDILSKY---MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY--  505 (672)
T ss_pred             cccccccchhHHHHHHHHHhc---ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH--
Confidence            1         12345666554   445566666666666666666666666666666666666664 35666665432  


Q ss_pred             CCcchhhHHHHHHHhccc
Q 007515          329 SNSGALQIVPALEEAGAR  346 (600)
Q Consensus       329 ~~~~~~~i~~~L~~~ga~  346 (600)
                      ...++.+++++|+++|+.
T Consensus       506 ~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        506 RRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             hhcCcHHHHHHHHHcCCC
Confidence            112345566666666543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-36  Score=318.15  Aligned_cols=280  Identities=23%  Similarity=0.284  Sum_probs=248.4

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCH
Q 007515           47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRL  126 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  126 (600)
                      ..|+.|+..|+.+.|+.|++.++..++..+..|.||||.|+..|+.++|++|++.|+++. ..+..|.|||+.|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n-~~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN-HINTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCH
Confidence            468999999999999999998877788889999999999999999999999999999875 4588899999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCC
Q 007515          127 DVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL  206 (600)
Q Consensus       127 e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  206 (600)
                      +++++|+++|.+...          .+....+.++++.|++.+.++. ..|..|.||||+|+..|+.+++++|++.|+++
T Consensus        82 ~iv~~Ll~~g~~~~~----------~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~  150 (434)
T PHA02874         82 DIIKLLIDNGVDTSI----------LPIPCIEKDMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDLESIKMLFEYGADV  150 (434)
T ss_pred             HHHHHHHHCCCCCCc----------chhccCCHHHHHHHHHCcCCCC-CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC
Confidence            999999999876532          1233456799999999998887 77899999999999999999999999999998


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCCh
Q 007515          207 SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT  286 (600)
Q Consensus       207 ~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T  286 (600)
                      .. +|.+|.||||+|+..|+.++++.|++.+ ...+..+..|.||||+|+..|+.+++++|++.   +..++.++..|.|
T Consensus       151 n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~---g~~i~~~~~~g~T  225 (434)
T PHA02874        151 NI-EDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGDYACIKLLIDH---GNHIMNKCKNGFT  225 (434)
T ss_pred             CC-cCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCcCCCCCCCC
Confidence            65 7899999999999999999999999987 46677889999999999999999999999987   5568889999999


Q ss_pred             HhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          287 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       287 ~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      |||+|+..+. +.+.+|+ .|+++|.+|.+|.||||+|...   ....+++++|++.|++..
T Consensus       226 pL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~---~~~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        226 PLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINP---PCDIDIIDILLYHKADIS  282 (434)
T ss_pred             HHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhc---CCcHHHHHHHHHCcCCCC
Confidence            9999999875 5666666 6899999999999999997542   335789999999998765

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.1e-35  Score=287.29  Aligned_cols=236  Identities=21%  Similarity=0.214  Sum_probs=187.1

Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhc
Q 007515           89 EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA  168 (600)
Q Consensus        89 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~  168 (600)
                      .++.+++++|+++++.   ..|.+|.||||+|+..|+.+++++|++.+++.+..  .+.||||.|+..|+.++++.|++.
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            3456667777766653   24666777777777777777777777776655433  245778888887888888888877


Q ss_pred             CccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhcccccccccccc
Q 007515          169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEG-RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH  247 (600)
Q Consensus       169 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  247 (600)
                      +.++. .+|..|+||||+|+..|+.+++++|+++|+++.. .+..| .||||+|+..|+.++++.|++.++...+.  ..
T Consensus        84 Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~-~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~  159 (284)
T PHA02791         84 GMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AI  159 (284)
T ss_pred             CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--cc
Confidence            77665 6788899999999999999999999999998765 56666 58999999999999999999876543211  25


Q ss_pred             ccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChH-hHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhh
Q 007515          248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTI-LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  326 (600)
Q Consensus       248 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~  326 (600)
                      |.||||+|+++|+.+++++|++.   ++++|.+|..|.|| ||+|+..|+.+++++|+++|+|+|++|.+| |+|+    
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~---gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l~----  231 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLLD----  231 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHC---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccCC----
Confidence            88999999999999999999997   56788999999987 999999999999999999999999999955 6664    


Q ss_pred             hcCCcchhhHHHHHHHhcccc
Q 007515          327 DASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       327 ~a~~~~~~~i~~~L~~~ga~~  347 (600)
                            ..+++++|++..++.
T Consensus       232 ------~~e~~~~ll~~~~~~  246 (284)
T PHA02791        232 ------DAEIAKMIIEKHVEY  246 (284)
T ss_pred             ------CHHHHHHHHHhhhhh
Confidence                  456999999887764

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=313.67  Aligned_cols=335  Identities=20%  Similarity=0.189  Sum_probs=208.7

Q ss_pred             cccCccccHHHHHHHHc---CCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHH----HHHHH-----------
Q 007515            4 EAINPYMERHLFETILR---GDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEEL----ASEIL-----------   65 (600)
Q Consensus         4 ~~~~~~~~~~L~~A~~~---gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~----v~~Ll-----------   65 (600)
                      +..+..+.++|+.|+..   |+.+.++.+++.+...  ...+..|.||||.|+..|+.++    ++.|+           
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v--~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~  103 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP--LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF  103 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc--cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc
Confidence            34566778889986554   8899999998877654  2456678888888888776432    33444           


Q ss_pred             --------------------HhCchhhhccCCCCCcHhHHHH--HcCCHHHHHHHHhCCcccccc--cCCCC--------
Q 007515           66 --------------------KLCPEMVAAENEKMETPLHEAC--REGRLNFVKLFVGIDPSVIYK--LNRDN--------  113 (600)
Q Consensus        66 --------------------~~~~~~l~~~n~~g~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~--~~~~g--------  113 (600)
                                          +.|.+ ++.+|..|.||||.|+  ..|+.+++++|++.|+++...  .+..|        
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence                                33333 4455555666665432  345566666666666555321  11112        


Q ss_pred             ---CcHHHHHHH-----------hCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCH--HHHHHHHhcCcccc---c
Q 007515          114 ---ESVLYVACE-----------RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHL--DIVKELLEARQEFA---W  174 (600)
Q Consensus       114 ---~tpL~~A~~-----------~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~--~~v~~Ll~~~~~~~---~  174 (600)
                         .||||+|+.           .++.+++++|+++|++++..+..|.||||+|+..|+.  ++++.|++ +.+..   .
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence               366666654           3455666666666666655555555666666666553  46666553 33322   1


Q ss_pred             cCCCCCChHHHHHHhc---------CcHHHHHHHHhcCCCCCC------CCCC------------CCCCHHHH---HHHc
Q 007515          175 KKDLNGHTPLHLSCSK---------GHLEITRELLKLDPDLSS------LPDN------------EGRTPLHW---AAIK  224 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~---------g~~~iv~~Ll~~~~~~~~------~~d~------------~g~tpL~~---Aa~~  224 (600)
                      ..|..|.+|+|+|+.-         .+.++++.|++.|++...      ..+.            .+.+++|.   |+..
T Consensus       262 ~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  341 (661)
T PHA02917        262 IDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTF  341 (661)
T ss_pred             ccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHc
Confidence            2344455555555521         144556666665543210      0001            12223332   2235


Q ss_pred             CC--HHHHHHHHhcccc-----------------------------ccccccccccchhhHhHhcCc-------------
Q 007515          225 GR--INIIDEILSLNLQ-----------------------------SAEMRTIHGETVLHLTVKNNQ-------------  260 (600)
Q Consensus       225 g~--~~~v~~Ll~~~~~-----------------------------~~~~~~~~g~t~Lh~Av~~~~-------------  260 (600)
                      |.  .++++.|++.+.+                             .....+..|+||||.|++.+.             
T Consensus       342 g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~  421 (661)
T PHA02917        342 GDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKG  421 (661)
T ss_pred             CCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhc
Confidence            54  4477777776532                             122234469999999875432             


Q ss_pred             ----------hhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCC
Q 007515          261 ----------YEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN  330 (600)
Q Consensus       261 ----------~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~  330 (600)
                                .+++++|+..   ++++|.+|..|+||||+|+..++.+++++|++.|+|+|.+|..|.|||++|..   .
T Consensus       422 ~~~~~~~~~~~~~v~~Ll~~---GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~---~  495 (661)
T PHA02917        422 LCDMSYACPILSTINICLPY---LKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAIN---E  495 (661)
T ss_pred             cchhhhhhhhHHHHHHHHHC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH---h
Confidence                      4567888887   67899999999999999999999999999999999999999999999999642   2


Q ss_pred             cchhhHHHHHHHhccccc
Q 007515          331 SGALQIVPALEEAGARRC  348 (600)
Q Consensus       331 ~~~~~i~~~L~~~ga~~~  348 (600)
                      .+..+++++|+.+|++..
T Consensus       496 ~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        496 SRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             CCCHHHHHHHHHcCCChh
Confidence            346789999999987643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=309.11  Aligned_cols=274  Identities=19%  Similarity=0.200  Sum_probs=124.3

Q ss_pred             CCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHh--CCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC------CH
Q 007515           21 GDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARF--GHEELASEILKLCPEMVAAENEKMETPLHEACREG------RL   92 (600)
Q Consensus        21 gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~--g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g------~~   92 (600)
                      .+.+.++.+++.+.+. +..  ..|.|+||.++..  ++.++|+.|++.|++ ++.++ .+.||||.|+.++      +.
T Consensus        14 ~~~~~v~~LL~~Gadv-N~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         14 VDKNALEFLLRTGFDV-NEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             CcHHHHHHHHHcCCCc-ccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcchhhHH
Confidence            4455555555544332 111  2344555443322  245555555555554 33333 3455555554432      23


Q ss_pred             HHHHHHHhCCcccccccCCCCCcHHHHHHHh---CCHHHHHHHHhCCccc-ccccCCCChHHHHHHhc--CCHHHHHHHH
Q 007515           93 NFVKLFVGIDPSVIYKLNRDNESVLYVACER---GRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMA--GHLDIVKELL  166 (600)
Q Consensus        93 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~e~v~~Ll~~~~~~-~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll  166 (600)
                      +++++|++.|+++. ..+..|.||||.|+..   |+.+++++|+++|+++ +..+..|.||||+|+..  ++.++++.|+
T Consensus        89 ~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         89 KIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            45555555555542 2244555555544433   3445555555555554 34444444555554432  3445555555


Q ss_pred             hcCccccccCCCCCChHHHHHHhcC----cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc------CCHHHHHHHHhc
Q 007515          167 EARQEFAWKKDLNGHTPLHLSCSKG----HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK------GRINIIDEILSL  236 (600)
Q Consensus       167 ~~~~~~~~~~d~~g~tpLh~A~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~------g~~~~v~~Ll~~  236 (600)
                      +.+.++....+..|.||||.|+..+    +.+++++|++.|+++.. .+..+.+|||.++..      +..+++++|+. 
T Consensus       168 ~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~-~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-  245 (494)
T PHA02989        168 SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET-NNNGSESVLESFLDNNKILSKKEFKVLNFILK-  245 (494)
T ss_pred             HcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc-cCCccccHHHHHHHhchhhcccchHHHHHHHh-
Confidence            5555444223444555555544332    44555555555554433 333445555444332      12333333332 


Q ss_pred             cccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhc
Q 007515          237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL  306 (600)
Q Consensus       237 ~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  306 (600)
                      + .+++.+|..|+||||+|+..++.+++++|++.   ++++|.+|..|+||||+|+..++.++++.|++.
T Consensus       246 ~-advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~---Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        246 Y-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKL---GDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             C-CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            2 33444444444444444444444444444443   334444444444444444444444444444443

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.3e-34  Score=312.04  Aligned_cols=314  Identities=17%  Similarity=0.133  Sum_probs=228.4

Q ss_pred             HHHHHHHHhhchhhhhccCCCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHH----HH
Q 007515           23 TQAFLSLIQQDEAKIKQTVPGSLNTILHLTARF---GHEELASEILKLCPEMVAAENEKMETPLHEACREGRLN----FV   95 (600)
Q Consensus        23 ~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~---g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~----iv   95 (600)
                      ++.+++++.++.. . ...|..|+||||+|+..   |+.++|+.|++.|.+ ++.++..|.||||+|+..|+.+    ++
T Consensus        12 ~~~~~~l~~~~~~-~-~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         12 LDELKQMLRDRDP-N-DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             HHHHHHHHhccCc-c-cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            4677888864433 2 45688899999997655   889999999999988 6789999999999999999854    55


Q ss_pred             HHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHH--hcCCHHHHHHHHhcCcccc
Q 007515           96 KLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSA--MAGHLDIVKELLEARQEFA  173 (600)
Q Consensus        96 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~  173 (600)
                      +.|++.+... .. + ...+++++|+.+|+.|++++|+++|++++..+..|.||||.|+  ..|+.+++++|++++.+++
T Consensus        89 ~~Ll~~~~~~-n~-~-~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917         89 MALLEATGYS-NI-N-DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             HHHHhccCCC-CC-C-CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            6777654321 11 1 1236677888888999999999999988888888888998543  4678899999999888775


Q ss_pred             c--cCCCCC-----------ChHHHHHHh-----------cCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH--
Q 007515          174 W--KKDLNG-----------HTPLHLSCS-----------KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI--  227 (600)
Q Consensus       174 ~--~~d~~g-----------~tpLh~A~~-----------~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~--  227 (600)
                      .  ..+..|           .||||+|+.           .++.+++++|+++|++++. .|.+|.||||+|+.+|+.  
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~-~d~~G~TpLh~A~~~g~~~~  244 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS-IDKNYCTALQYYIKSSHIDI  244 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc-CCCCCCcHHHHHHHcCCCcH
Confidence            2  122233           589998875           4578899999999988865 788899999999988874  


Q ss_pred             HHHHHHHhcccccc---ccccccccchhhHhH------------------------------------------------
Q 007515          228 NIIDEILSLNLQSA---EMRTIHGETVLHLTV------------------------------------------------  256 (600)
Q Consensus       228 ~~v~~Ll~~~~~~~---~~~~~~g~t~Lh~Av------------------------------------------------  256 (600)
                      ++++.|++ +.+..   ...|..|.+++|+|+                                                
T Consensus       245 eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~  323 (661)
T PHA02917        245 DIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLIL  323 (661)
T ss_pred             HHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHH
Confidence            68888875 32211   112222333333333                                                


Q ss_pred             ----------------hcCc--hhHHHHHHHhcc---------------------------cccccCCCCCCCChHhHHH
Q 007515          257 ----------------KNNQ--YEAVKYLMETLN---------------------------ITKLANMPDNDGNTILHLA  291 (600)
Q Consensus       257 ----------------~~~~--~~iv~~Ll~~~~---------------------------~~~~~n~~d~~G~T~Lh~A  291 (600)
                                      ..|.  .+++++|++.+.                           .+...+..|.+|+||||.|
T Consensus       324 ~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a  403 (661)
T PHA02917        324 KTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHL  403 (661)
T ss_pred             HHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHH
Confidence                            2333  336677766532                           1223445566799999998


Q ss_pred             HhCC-----------------------cHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          292 TAGK-----------------------LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       292 ~~~~-----------------------~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      ++.+                       ..+++++|+++|+|+|.+|..|.||||+|..    .+..+++++|++.|++..
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~----~~~~~~v~~Ll~~GAdin  479 (661)
T PHA02917        404 CKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVR----YNKQSLVSLLLESGSDVN  479 (661)
T ss_pred             HHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHCcCCCC
Confidence            7432                       3567899999999999999999999999653    457789999999998765

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-34  Score=302.19  Aligned_cols=242  Identities=21%  Similarity=0.264  Sum_probs=182.8

Q ss_pred             CcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCH
Q 007515           80 ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHL  159 (600)
Q Consensus        80 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~  159 (600)
                      +++||.|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|+++|++++.....+.+|||.|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            455555555555555555555555443 2244555555555555555555555555555544444455666666666777


Q ss_pred             HHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 007515          160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ  239 (600)
Q Consensus       160 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~  239 (600)
                      ++++.|++.+.......+.+|.||||+|+..|+.+++++|++.|+++.. ++..|.||||+|+..|+.++++.|++.+ .
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~-~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-~  159 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI-PNTDKFSPLHLAVMMGDIKGIELLIDHK-A  159 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhcC-C
Confidence            7777777666655555667789999999999999999999999988755 7888999999999999999999999877 4


Q ss_pred             ccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCC-hHhHHHHhCCcHHHHHHHHhcCCCcccc---cC
Q 007515          240 SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGN-TILHLATAGKLTTMVIYLLKLGVDVNAI---NR  315 (600)
Q Consensus       240 ~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~~~iv~~Ll~~gad~n~~---n~  315 (600)
                      ..+.+|..|.||||+|+..|+.+++++|++.   +..++..+.+|. ||+|+|+..++.+++++|+++|+|+|..   +.
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~  236 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEG  236 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCC
Confidence            6677888899999999999999999999887   667788888774 8999999999999999999999999976   67


Q ss_pred             CCCCHHHHHhhh
Q 007515          316 KGYTALDVVESD  327 (600)
Q Consensus       316 ~G~T~l~~a~~~  327 (600)
                      +|.||++++...
T Consensus       237 ~~~t~l~~~~~~  248 (413)
T PHA02875        237 EECTILDMICNM  248 (413)
T ss_pred             CchHHHHHHHhh
Confidence            899999987643

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-34  Score=303.20  Aligned_cols=315  Identities=17%  Similarity=0.137  Sum_probs=232.6

Q ss_pred             HHHHHHhhchhhhhccCCCCCCcHHHHHHHhC---CHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC--CHHHHHHHH
Q 007515           25 AFLSLIQQDEAKIKQTVPGSLNTILHLTARFG---HEELASEILKLCPEMVAAENEKMETPLHEACREG--RLNFVKLFV   99 (600)
Q Consensus        25 ~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g---~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g--~~~iv~~Ll   99 (600)
                      .++..++.... ++...|..|+||||+|+..|   +.++|++|++.|++ ++.+|..|.||||+|+..+  +.++|++|+
T Consensus        22 ~~~~~~~~~~~-in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd-in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll   99 (672)
T PHA02730         22 KIKLEIETCHN-LSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE-RLCRNNEGLTPLGVYSKRKYVKSQIVHLLI   99 (672)
T ss_pred             HHHHHHHHhcc-hhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC-CcccCCCCCChHHHHHHcCCCcHHHHHHHH
Confidence            34555554423 33456778999999999997   59999999999998 8899999999999999977  799999999


Q ss_pred             hCCccc-ccccCCCCCcHHHHHHH--hCCHHHHHHHHh-CCccccccc-----CCCChHHHHHHhcCCHHHHHHHHhcCc
Q 007515          100 GIDPSV-IYKLNRDNESVLYVACE--RGRLDVAKQLLN-YSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLEARQ  170 (600)
Q Consensus       100 ~~~~~~-~~~~~~~g~tpL~~A~~--~g~~e~v~~Ll~-~~~~~~~~~-----~~~~t~Lh~A~~~g~~~~v~~Ll~~~~  170 (600)
                      +.++.. ....+..+.+||+.++.  +++.+++++|+. .+.+++...     ..+.+|++++...++.++|++|++.++
T Consensus       100 ~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~  179 (672)
T PHA02730        100 SSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSEC  179 (672)
T ss_pred             hcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCC
Confidence            996533 12246678899998888  999999999997 555655442     256789999999999999999999999


Q ss_pred             ccc------ccCCCCCCh-HHHHH------HhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHh
Q 007515          171 EFA------WKKDLNGHT-PLHLS------CSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW--AAIKGRINIIDEILS  235 (600)
Q Consensus       171 ~~~------~~~d~~g~t-pLh~A------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~--Aa~~g~~~~v~~Ll~  235 (600)
                      +..      ...|..+++ .||+.      ..+++.+++++|+++|++++. +|.+|.||||+  |...|+.|+++.|++
T Consensus       180 ~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~-kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        180 YSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHG-RDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            884      113444554 44533      456789999999999999876 89999999995  556677999999998


Q ss_pred             --------------------------------cccccccc--------------------c-------------------
Q 007515          236 --------------------------------LNLQSAEM--------------------R-------------------  244 (600)
Q Consensus       236 --------------------------------~~~~~~~~--------------------~-------------------  244 (600)
                                                      .+.+ ...                    .                   
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~  337 (672)
T PHA02730        259 DVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQ  337 (672)
T ss_pred             ccccccccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhc
Confidence                                            2211 111                    1                   


Q ss_pred             -------------------------------------cccccchhhHhHhcCc----hhHHHHHHHhcccccccCCCCCC
Q 007515          245 -------------------------------------TIHGETVLHLTVKNNQ----YEAVKYLMETLNITKLANMPDND  283 (600)
Q Consensus       245 -------------------------------------~~~g~t~Lh~Av~~~~----~~iv~~Ll~~~~~~~~~n~~d~~  283 (600)
                                                           +..|.||||+|+..++    .+++++|++++. ..++|.+|.+
T Consensus       338 ~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga-~~dIN~kd~~  416 (672)
T PHA02730        338 QDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNG-HMAINHVSNN  416 (672)
T ss_pred             cchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCC-CccccccccC
Confidence                                                 1346678887777664    688888877632 1246777778


Q ss_pred             CChHhHH---HHhCC---------cHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          284 GNTILHL---ATAGK---------LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       284 G~T~Lh~---A~~~~---------~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      |.||||.   |...+         ..+++++|+++|+|+|++|..|+|||++|..    .++.+++++|+++||+..
T Consensus       417 G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~----~~~~eive~LI~~GAdIN  489 (672)
T PHA02730        417 GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVD----VNNIQFARRLLEYGASVN  489 (672)
T ss_pred             CCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHH----hCCHHHHHHHHHCCCCCC
Confidence            8888873   32221         2345778888888888888888888887543    345677888888887654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.7e-35  Score=324.58  Aligned_cols=334  Identities=29%  Similarity=0.348  Sum_probs=252.0

Q ss_pred             cccccCccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCc
Q 007515            2 EIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMET   81 (600)
Q Consensus         2 e~~~~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~T   81 (600)
                      ++.+.+...-.+|+.|+..|..+.+..++.++...  ...+..|.||||.||+.+..|.+++|++.+.+ +...+....|
T Consensus       234 dv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~--~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~-~~~~~~~~kt  310 (1143)
T KOG4177|consen  234 DVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASV--NVSTVRGETPLHMAARAGQVEVCKLLLQNGAD-VLAKARDDQT  310 (1143)
T ss_pred             cCCcccccCccHHHHHHhccchhHHHHHHhccccc--CcccccccCcchhhhccchhhhHhhhhccCcc-cccccccccC
Confidence            45677788889999999999999999999988664  34566789999999999999999999998765 5555555556


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCcccc--------------------------------cccCCCCCcHHHHHHHhCCHHHH
Q 007515           82 PLHEACREGRLNFVKLFVGIDPSVI--------------------------------YKLNRDNESVLYVACERGRLDVA  129 (600)
Q Consensus        82 pLh~Aa~~g~~~iv~~Ll~~~~~~~--------------------------------~~~~~~g~tpL~~A~~~g~~e~v  129 (600)
                      |+|+|.+.|+.++++++++.++...                                ......+.+|+++|+..|..+++
T Consensus       311 ~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v  390 (1143)
T KOG4177|consen  311 PLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVV  390 (1143)
T ss_pred             hhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHH
Confidence            6665555555555555554433221                                12245566677777777777777


Q ss_pred             HHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC-cHHHHHHHHhcCCCCCC
Q 007515          130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG-HLEITRELLKLDPDLSS  208 (600)
Q Consensus       130 ~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~~~  208 (600)
                      ++++..+.+++.....|.||||.|+..++.++++.+++.+.+.. ..+..|.||+|+|+..| +.+....+++.+.+++.
T Consensus       391 ~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~-~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~  469 (1143)
T KOG4177|consen  391 ELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPN-AKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNA  469 (1143)
T ss_pred             HhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChh-hHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcch
Confidence            77777776666666666666666666666666666666655554 55666777777777777 66666667777666644


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhcc--------------------------------ccccccccccccchhhHhH
Q 007515          209 LPDNEGRTPLHWAAIKGRINIIDEILSLN--------------------------------LQSAEMRTIHGETVLHLTV  256 (600)
Q Consensus       209 ~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~--------------------------------~~~~~~~~~~g~t~Lh~Av  256 (600)
                       .-..|.||||+|+..|+.+++..+++..                                ....+.++..|.||||.|+
T Consensus       470 -~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~  548 (1143)
T KOG4177|consen  470 -VSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV  548 (1143)
T ss_pred             -hccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH
Confidence             5566777777777777777777666533                                1334556678899999999


Q ss_pred             hcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhH
Q 007515          257 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI  336 (600)
Q Consensus       257 ~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i  336 (600)
                      .+|+.++|++|+++   +.+.+.+|+.|+||||.|+..|+.+++.+|+++|+++|+.|.+|.|||++    +...+..++
T Consensus       549 ~~g~v~~VkfLLe~---gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~i----A~~lg~~~~  621 (1143)
T KOG4177|consen  549 HYGNVDLVKFLLEH---GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHI----AVRLGYLSV  621 (1143)
T ss_pred             hcCCchHHHHhhhC---CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHH----HHHhcccch
Confidence            99999999999998   77899999999999999999999999999999999999999999999999    456678889


Q ss_pred             HHHHHHhcccc
Q 007515          337 VPALEEAGARR  347 (600)
Q Consensus       337 ~~~L~~~ga~~  347 (600)
                      ++.|...++..
T Consensus       622 ~k~l~~~~~~~  632 (1143)
T KOG4177|consen  622 VKLLKVVTATP  632 (1143)
T ss_pred             hhHHHhccCcc
Confidence            99999988874

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.1e-34  Score=279.52  Aligned_cols=218  Identities=28%  Similarity=0.393  Sum_probs=191.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhchh----hhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhh--------ccCCCCC
Q 007515           13 HLFETILRGDTQAFLSLIQQDEA----KIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVA--------AENEKME   80 (600)
Q Consensus        13 ~L~~A~~~gd~~~~~~ll~~~~~----~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~--------~~n~~g~   80 (600)
                      ..++|++.|++..+..++.+...    .+.. ...+|.|||-+||++||.++|++|++.+...++        -.+..|-
T Consensus         7 ~~~naa~~g~l~~l~~ll~~~s~~ei~~l~~-~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen    7 VVINAARDGKLQLLAKLLINSSNEEIISLIG-EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HHHHHhhhhhHHHHHHHHhCCchHHHHHHhc-cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCC
Confidence            44689999999999998865431    1111 234578999999999999999999997543222        2356788


Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHH
Q 007515           81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLD  160 (600)
Q Consensus        81 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (600)
                      +||-.|+..||.++|+.|++++++++.. ...+.|||-.||.-|+.|++++|+++++++...+..|.|.||+|+..||.+
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~t-T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~  164 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVD  164 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccccc-cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchH
Confidence            9999999999999999999999888654 566779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 007515          161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS  235 (600)
Q Consensus       161 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~  235 (600)
                      ++++|++.+.+++ .++..|+|+||.|+..|+.+++++|+++|+.+.  .|..|.|||..|+..|+.++|+.|++
T Consensus       165 I~qyLle~gADvn-~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  165 IAQYLLEQGADVN-AKSYKGNTALHDCAESGSVDIVQLLLKHGAKID--VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHhCCCcc-hhcccCchHHHhhhhcccHHHHHHHHhCCceee--ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999998 889999999999999999999999999999875  58889999999999999999999995

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=301.96  Aligned_cols=280  Identities=19%  Similarity=0.223  Sum_probs=240.8

Q ss_pred             hCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc--CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC------CH
Q 007515           55 FGHEELASEILKLCPEMVAAENEKMETPLHEACRE--GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG------RL  126 (600)
Q Consensus        55 ~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g------~~  126 (600)
                      ....++|++|++.|.+ ++.. ..|.||||.++..  ++.++|++|++.|++++.. + .+.||||.|+.++      +.
T Consensus        13 ~~~~~~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK-G-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC-C-CCCCcHHHHHhccCcchhhHH
Confidence            4779999999999998 6666 6799999876654  3689999999999998643 3 5799999998754      57


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHhc---CCHHHHHHHHhcCccccccCCCCCChHHHHHHhc--CcHHHHHHHHh
Q 007515          127 DVAKQLLNYSSLLILEVDGLTTSLHVSAMA---GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK--GHLEITRELLK  201 (600)
Q Consensus       127 e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~  201 (600)
                      +++++|+++|++++..+..|.||||.|+..   ++.++++.|+++|.+++...|..|+||||+|+..  ++.+++++|++
T Consensus        89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~  168 (494)
T PHA02989         89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS  168 (494)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            899999999999998888899999988765   6789999999999998557899999999998764  68999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcC----CHHHHHHHHhccccccccccccccchhhHhHhcC------chhHHHHHHHhc
Q 007515          202 LDPDLSSLPDNEGRTPLHWAAIKG----RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN------QYEAVKYLMETL  271 (600)
Q Consensus       202 ~~~~~~~~~d~~g~tpL~~Aa~~g----~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~------~~~iv~~Ll~~~  271 (600)
                      +|+++....+..|.||||.|+..+    +.++++.|++.+ ..++..+..+.|+||.++..+      ..+++++|+.  
T Consensus       169 ~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--  245 (494)
T PHA02989        169 FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--  245 (494)
T ss_pred             cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHHHHhchhhcccchHHHHHHHh--
Confidence            999987656788999999998764    899999999988 467777888999999877643      4677887765  


Q ss_pred             ccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       272 ~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                        +.++|.+|.+|+||||+|+..++.+++++|++.|+|+|.+|..|.|||++|..    .++.++++.|++.++..
T Consensus       246 --~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        246 --YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLKPGK  315 (494)
T ss_pred             --CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCh
Confidence              46799999999999999999999999999999999999999999999999654    46788999999887643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=277.22  Aligned_cols=235  Identities=14%  Similarity=0.062  Sum_probs=134.7

Q ss_pred             CCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 007515           56 GHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY  135 (600)
Q Consensus        56 g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~  135 (600)
                      ++.+++++|++.++.   ..|..|.||||+|+..|+.+++++|++.+++...   .++.||||+|+..|+.+++++|++.
T Consensus        10 ~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791         10 KSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             CHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            345555555554432   3455555666666666666666655555544322   1245566666666666666666655


Q ss_pred             CcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCC-hHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCC
Q 007515          136 SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGH-TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEG  214 (600)
Q Consensus       136 ~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  214 (600)
                      +++++..+..|.||||+|+..|+.++++.|++.+++++ ..+..|+ ||||+|+..|+.+++++|++++++...  ...|
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~g  160 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAIL  160 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cccC
Confidence            55555555555556666666666666666666555554 3444443 566666666666666666665543311  1235


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccccccccccch-hhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHh
Q 007515          215 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV-LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA  293 (600)
Q Consensus       215 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~  293 (600)
                      .||||+|+..|+.++++.|++.+ .+++..|..|.|| ||+|+.+|+.+++++|++.   +.++|.+|..| |+|     
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~---Ga~in~~~~~~-~~l-----  230 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY---DINIYSVNLEN-VLL-----  230 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC---CCCCccCcccC-ccC-----
Confidence            66666666666666666666655 3445555556654 6666666666666666665   45566666633 555     


Q ss_pred             CCcHHHHHHHHhcCCCc
Q 007515          294 GKLTTMVIYLLKLGVDV  310 (600)
Q Consensus       294 ~~~~~iv~~Ll~~gad~  310 (600)
                       ++.+++++||++.++.
T Consensus       231 -~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        231 -DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             -CCHHHHHHHHHhhhhh
Confidence             4557777777665553

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=302.74  Aligned_cols=296  Identities=17%  Similarity=0.149  Sum_probs=243.0

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHH
Q 007515            9 YMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR   88 (600)
Q Consensus         9 ~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~   88 (600)
                      ....+|+.|+..|+.+.++.+++.+.+.  ...+..|.||||+||..|+.+.+++|++.+... .  ...+.+||+.|+.
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadv--n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~--~~~~~~~l~~a~~  110 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNV--NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-S--VFYTLVAIKDAFN  110 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-c--cccchhhHHHHHH
Confidence            3456899999999999999999987653  356788999999999999999999999986542 1  2567899999999


Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh--CCHHHHHHHHhCCcccccccCC-CChHHHHHHhcCCHHHHHHH
Q 007515           89 EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER--GRLDVAKQLLNYSSLLILEVDG-LTTSLHVSAMAGHLDIVKEL  165 (600)
Q Consensus        89 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~e~v~~Ll~~~~~~~~~~~~-~~t~Lh~A~~~g~~~~v~~L  165 (600)
                      .|+.++++.|+..+.......+   ...+......  .+.+++++|+++|++++..+.. |.||||.|+..|+.++++.|
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            9999999999986533211111   0111111112  2356999999999999888777 89999999999999999999


Q ss_pred             HhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccc
Q 007515          166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK-GRINIIDEILSLNLQSAEMR  244 (600)
Q Consensus       166 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~-g~~~~v~~Ll~~~~~~~~~~  244 (600)
                      ++.++++. ..|..|.||||.|+..|+.++++.|++.|+++.. +|..|.||||+|+.. ++.++++.|++.+. +++..
T Consensus       188 l~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~-~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga-dvn~~  264 (477)
T PHA02878        188 LSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA-RDKCGNTPLHISVGYCKDYDILKLLLEHGV-DVNAK  264 (477)
T ss_pred             HHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhcCCHHHHHHHHHcCC-CCCcc
Confidence            99999886 7899999999999999999999999999999876 799999999999976 79999999999885 55555


Q ss_pred             c-ccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC-cHHHHHHHHhc-----CCCcccccCCC
Q 007515          245 T-IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK-LTTMVIYLLKL-----GVDVNAINRKG  317 (600)
Q Consensus       245 ~-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~-----gad~n~~n~~G  317 (600)
                      + ..|.||||+|  .++.+++++|++.   ++++|.+|.+|+||||+|+..+ ..+++++|+..     +.+++.+|.+|
T Consensus       265 ~~~~g~TpLh~A--~~~~~~v~~Ll~~---gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g  339 (477)
T PHA02878        265 SYILGLTALHSS--IKSERKLKLLLEY---GADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEG  339 (477)
T ss_pred             CCCCCCCHHHHH--ccCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHH
Confidence            5 4799999999  5678999999987   7789999999999999999754 45677776643     56777777777


Q ss_pred             CCH
Q 007515          318 YTA  320 (600)
Q Consensus       318 ~T~  320 (600)
                      .++
T Consensus       340 ~~~  342 (477)
T PHA02878        340 FID  342 (477)
T ss_pred             HHH
Confidence            655

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-32  Score=288.27  Aligned_cols=244  Identities=22%  Similarity=0.235  Sum_probs=198.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      .+++||.|++.|+.+++++|++.|.+ ++.++..|.||||+|+..|+.+++++|++.|+... ..+..+.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHCC
Confidence            35788999999999999999988876 67778888999999999999999999998887653 33567888999999999


Q ss_pred             CHHHHHHHHhCCcccc-cccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC
Q 007515          125 RLDVAKQLLNYSSLLI-LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD  203 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~-~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  203 (600)
                      +.+++++|++.+.... .....|.||||.|+..|+.++++.|++.++++. ..+..|.||||+|+..|+.+++++|+++|
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999998877543 334457789999999999999999998888876 67888999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-cchhhHhHhcCchhHHHHHHHhcccccccCCCCC
Q 007515          204 PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG-ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN  282 (600)
Q Consensus       204 ~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~  282 (600)
                      +++.. +|..|.||||+|+..|+.++++.|++.+. .++..+..| .|++|+|+..++.+++++|++++......+..+.
T Consensus       159 ~~~~~-~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~  236 (413)
T PHA02875        159 ACLDI-EDCCGCTPLIIAMAKGDIAICKMLLDSGA-NIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEG  236 (413)
T ss_pred             CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCC
Confidence            88754 78889999999999999999999998874 455555555 5788889999999999999988544434444578


Q ss_pred             CCChHhHHHHh
Q 007515          283 DGNTILHLATA  293 (600)
Q Consensus       283 ~G~T~Lh~A~~  293 (600)
                      +|.|||+.+..
T Consensus       237 ~~~t~l~~~~~  247 (413)
T PHA02875        237 EECTILDMICN  247 (413)
T ss_pred             CchHHHHHHHh
Confidence            89999998754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-33  Score=241.69  Aligned_cols=175  Identities=32%  Similarity=0.446  Sum_probs=142.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHH
Q 007515          145 GLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL-DPDLSSLPDNEGRTPLHWAAI  223 (600)
Q Consensus       145 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~  223 (600)
                      ++.||||+||..|+.+++.+|+....-..+.+|..||||||.||+.|+.++|+.|+.+ +++++. .++.|.||||+|+.
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna-~tn~G~T~LHyAag  115 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNA-TTNGGQTCLHYAAG  115 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcce-ecCCCcceehhhhc
Confidence            4444555555555555555555322222235588899999999999999999999988 788765 67889999999999


Q ss_pred             cCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHH
Q 007515          224 KGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  303 (600)
Q Consensus       224 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  303 (600)
                      .|..++++.|++.+ +.+...|..|.||||.|+.-|+.+++++|+..   ++-+|.+|+.|+||||.|...++.++..+|
T Consensus       116 K~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~---~a~~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ---GAPLNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             CChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhc---CCCCCcccccCccHHHHHHhccCchHHHHH
Confidence            99999999999887 78888899999999999999999999999887   567899999999999999888999999999


Q ss_pred             HhcCCCcccccCCCCCHHHHHh
Q 007515          304 LKLGVDVNAINRKGYTALDVVE  325 (600)
Q Consensus       304 l~~gad~n~~n~~G~T~l~~a~  325 (600)
                      ++.||+++..|++| ||+.+++
T Consensus       192 V~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  192 VRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHhccceeeccccC-chHHHHH
Confidence            99999999999999 9988754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.5e-33  Score=309.17  Aligned_cols=338  Identities=27%  Similarity=0.331  Sum_probs=268.5

Q ss_pred             cccCccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHh
Q 007515            4 EAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPL   83 (600)
Q Consensus         4 ~~~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpL   83 (600)
                      .+.+.....+++.++..+-++.++-++..+.+.  ...+..|-||||.|+..|+.++++++++.+.. .+..+..|+|||
T Consensus       203 ~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv--~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~-~~~~~vr~~tpl  279 (1143)
T KOG4177|consen  203 NASALNGFTPLHIACKKNRIKVVELLLKHGADV--SAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS-VNVSTVRGETPL  279 (1143)
T ss_pred             cccccCCCCchhhhccccccceeeeeeeccCcC--CcccccCccHHHHHHhccchhHHHHHHhcccc-cCcccccccCcc
Confidence            445566777888888888888777777766553  45677899999999999999999999999888 888899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHH
Q 007515           84 HEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK  163 (600)
Q Consensus        84 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~  163 (600)
                      |.||+.+..+++++|++.+.++.. .+....||++.|...|..++++++++.+..++.....+.+|+|+++..++.++..
T Consensus       280 h~AA~~~~~e~~~~ll~~ga~~~~-~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~  358 (1143)
T KOG4177|consen  280 HMAARAGQVEVCKLLLQNGADVLA-KARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAG  358 (1143)
T ss_pred             hhhhccchhhhHhhhhccCccccc-ccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHH
Confidence            999999999999999999888744 4788888998888888888888888888877777777777777777777777666


Q ss_pred             HHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCC--------------------------------CCC
Q 007515          164 ELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS--------------------------------LPD  211 (600)
Q Consensus       164 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~--------------------------------~~d  211 (600)
                      .+...++.-. ..+..|+||+|+|+..|..++++++++.|.+++.                                ..+
T Consensus       359 ~l~~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~  437 (1143)
T KOG4177|consen  359 ALLEHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKA  437 (1143)
T ss_pred             HhhccccccC-cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHh
Confidence            6655555443 4555666666666666666666666666655332                                134


Q ss_pred             CCCCCHHHHHHHcC-CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhc-------------------
Q 007515          212 NEGRTPLHWAAIKG-RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL-------------------  271 (600)
Q Consensus       212 ~~g~tpL~~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~-------------------  271 (600)
                      ..|+||+|+|+..| ..++...+++.+ ...+.....|.||||+|+..|+.++++.+++..                   
T Consensus       438 ~lG~T~lhvaa~~g~~~~~~~~l~~~g-~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  438 KLGYTPLHVAAKKGRYLQIARLLLQYG-ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             hcCCChhhhhhhcccHhhhhhhHhhcC-CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhh
Confidence            56778888888888 666666666554 677788889999999999999999999988742                   


Q ss_pred             -----------ccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHH
Q 007515          272 -----------NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL  340 (600)
Q Consensus       272 -----------~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L  340 (600)
                                 ..+...+.++..|+||||.|+..|+..+|++|+++|+|++++++.|+||||.|+.    .++.+++.+|
T Consensus       517 ~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~----~G~~~i~~LL  592 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQ----QGHNDIAELL  592 (1143)
T ss_pred             hhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHH----cChHHHHHHH
Confidence                       1233567788999999999999999999999999999999999999999999654    4588999999


Q ss_pred             HHhcccccCCC
Q 007515          341 EEAGARRCDQL  351 (600)
Q Consensus       341 ~~~ga~~~~~~  351 (600)
                      .++||.+....
T Consensus       593 lk~GA~vna~d  603 (1143)
T KOG4177|consen  593 LKHGASVNAAD  603 (1143)
T ss_pred             HHcCCCCCccc
Confidence            99999876543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-32  Score=291.69  Aligned_cols=293  Identities=18%  Similarity=0.190  Sum_probs=226.5

Q ss_pred             HHHHHHHcC---CHHHHHHHHhhchhhhhccCCCCCCcHHHHHHH--hCCHHHHHHHHHhCchhhhccCCCCCcHhHHHH
Q 007515           13 HLFETILRG---DTQAFLSLIQQDEAKIKQTVPGSLNTILHLTAR--FGHEELASEILKLCPEMVAAENEKMETPLHEAC   87 (600)
Q Consensus        13 ~L~~A~~~g---d~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~--~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa   87 (600)
                      .||+-+...   +.+.++.+++....  ...  ..+.|+++.+..  .++.++|++|++.|++ ++..|..|.||||.|+
T Consensus         5 ~l~~y~~~~~~~~~~~v~~ll~~~~~--~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~   79 (489)
T PHA02798          5 NLYNYITFSDNVKLSTVKLLIKSCNP--NEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTIL   79 (489)
T ss_pred             hhHHHeeecCcccHHHHHHHHhcCCh--hhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHH
Confidence            455555433   35688888865321  122  346677664443  4578999999999987 8888999999999987


Q ss_pred             Hc-----CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC---CHHHHHHHHhCCcccccccCCCChHHHHHHhcCC-
Q 007515           88 RE-----GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG---RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH-  158 (600)
Q Consensus        88 ~~-----g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~-  158 (600)
                      .+     ++.+++++|++.|+++. ..|..|.||||+|+.++   +.+++++|+++|++++..+..|.||||.|+..++ 
T Consensus        80 ~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~  158 (489)
T PHA02798         80 SNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHH  158 (489)
T ss_pred             HhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCc
Confidence            64     67899999999998874 45888999999999875   6899999999999988888888889999998887 


Q ss_pred             --HHHHHHHHhcCccccccCCCCCChHHHHHHhc----CcHHHHHHHHhcCCCCCCCCCCCCCCHHH-------HHHHcC
Q 007515          159 --LDIVKELLEARQEFAWKKDLNGHTPLHLSCSK----GHLEITRELLKLDPDLSSLPDNEGRTPLH-------WAAIKG  225 (600)
Q Consensus       159 --~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~-------~Aa~~g  225 (600)
                        .++++.|++.+.++....+..|.||||.++..    ++.+++++|+++|+++.. .+..|.++++       .+...+
T Consensus       159 ~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~-~~~~~~~~~~~~l~~l~~~~~~~  237 (489)
T PHA02798        159 IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK-ENKSHKKKFMEYLNSLLYDNKRF  237 (489)
T ss_pred             chHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc-CCccccchHHHHHHHHHhhcccc
Confidence              89999999988887754466788999988654    478899999999988765 5667777766       234456


Q ss_pred             CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          226 RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      +.++++.|+. + .+++.+|..|+||||+|+.+++.+++++|++.   ++++|.+|..|+||||+|+..++.++++.|++
T Consensus       238 ~~~i~~~l~~-~-~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~---GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~  312 (489)
T PHA02798        238 KKNILDFIFS-Y-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQL---GGDINIITELGNTCLFTAFENESKFIFNSILN  312 (489)
T ss_pred             hHHHHHHHHh-c-CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc---CCcccccCCCCCcHHHHHHHcCcHHHHHHHHc
Confidence            6777777665 3 46777888888888888888888888888876   66788888888888888888888888888888


Q ss_pred             cCCCcccccCCC
Q 007515          306 LGVDVNAINRKG  317 (600)
Q Consensus       306 ~gad~n~~n~~G  317 (600)
                      .|++++......
T Consensus       313 ~~~~~~~i~~~~  324 (489)
T PHA02798        313 KKPNKNTISYTY  324 (489)
T ss_pred             cCCCHHHHHHHH
Confidence            888887665433

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-32  Score=292.59  Aligned_cols=278  Identities=18%  Similarity=0.187  Sum_probs=236.7

Q ss_pred             CHHHHHHHHHhCchhhhccCCCCCcHhHHHHH--cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh-----CCHHHH
Q 007515           57 HEELASEILKLCPEMVAAENEKMETPLHEACR--EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER-----GRLDVA  129 (600)
Q Consensus        57 ~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~e~v  129 (600)
                      ..+.|+.|++.+.. .+.  ..|.|+++.+..  .++.++|++|+++|+++. ..+..|.||||.|+.+     ++.+++
T Consensus        17 ~~~~v~~ll~~~~~-~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         17 KLSTVKLLIKSCNP-NEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-GLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             cHHHHHHHHhcCCh-hhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-CCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            36899999987543 222  456777764443  458999999999999885 4589999999999864     678999


Q ss_pred             HHHHhCCcccccccCCCChHHHHHHhcC---CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCc---HHHHHHHHhcC
Q 007515          130 KQLLNYSSLLILEVDGLTTSLHVSAMAG---HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH---LEITRELLKLD  203 (600)
Q Consensus       130 ~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~  203 (600)
                      ++|+++|++++..+..|.||||+|+..+   +.++++.|++.|+++. ..|.+|.||||+|+..++   .+++++|++.|
T Consensus        93 ~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g  171 (489)
T PHA02798         93 KILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG  171 (489)
T ss_pred             HHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC
Confidence            9999999999999889999999999875   7899999999999987 889999999999999988   99999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHhccccccccccccccchhh-------HhHhcCchhHHHHHHHhcc
Q 007515          204 PDLSSLPDNEGRTPLHWAAIK----GRINIIDEILSLNLQSAEMRTIHGETVLH-------LTVKNNQYEAVKYLMETLN  272 (600)
Q Consensus       204 ~~~~~~~d~~g~tpL~~Aa~~----g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh-------~Av~~~~~~iv~~Ll~~~~  272 (600)
                      +++....+..|.||||.++..    ++.+++++|++.+ ..++..+..|+++++       .+...+..+++++|+.   
T Consensus       172 adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G-a~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~---  247 (489)
T PHA02798        172 VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG-FIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS---  247 (489)
T ss_pred             CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC-CCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh---
Confidence            998765566899999998764    5899999999988 456667778888876       2445677888888776   


Q ss_pred             cccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       273 ~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                       +.++|.+|..|+||||+|+..++.+++++|++.|+|+|.+|..|.|||++|.    ..++.++++.|++.|++..
T Consensus       248 -~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~----~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        248 -YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAF----ENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             -cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHH----HcCcHHHHHHHHccCCCHH
Confidence             3579999999999999999999999999999999999999999999999965    4567889999998887653

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-33  Score=239.10  Aligned_cols=205  Identities=26%  Similarity=0.331  Sum_probs=159.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHH
Q 007515           14 LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLN   93 (600)
Q Consensus        14 L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~   93 (600)
                      ....+.......+++++++.+..++.+.|.+|+||||+||.+|+.++|++|++.-...++.+|..|+||||.||..|+.+
T Consensus         7 ~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~e   86 (226)
T KOG4412|consen    7 GKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDE   86 (226)
T ss_pred             HHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHH
Confidence            34455666667778888888776777777788888888888888888888886443346677888888888888888888


Q ss_pred             HHHHHHhC-CcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccc
Q 007515           94 FVKLFVGI-DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEF  172 (600)
Q Consensus        94 iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~  172 (600)
                      +|+.|+.+ ++++ +..++.|.||||+|+..|..|++++|+++++.+...+..+.||||.|+.-|..+++++|+..+..+
T Consensus        87 vVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~  165 (226)
T KOG4412|consen   87 VVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL  165 (226)
T ss_pred             HHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCC
Confidence            88888887 6665 445788888888888888888888888888888777777888888888888888888888888666


Q ss_pred             cccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 007515          173 AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA  222 (600)
Q Consensus       173 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  222 (600)
                      + ..|..|+||||.|...|+.++...|+++|++... .|++| ||+-.|+
T Consensus       166 n-~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~-edke~-t~~~~a~  212 (226)
T KOG4412|consen  166 N-TQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDR-EDKEG-TALRIAC  212 (226)
T ss_pred             C-cccccCccHHHHHHhccCchHHHHHHHhccceee-ccccC-chHHHHH
Confidence            5 7788888888888777788888888888877644 67766 7766654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.98  E-value=2.7e-31  Score=259.84  Aligned_cols=214  Identities=28%  Similarity=0.365  Sum_probs=185.5

Q ss_pred             HHHHhCCHHHHHHHHHhCc--hh--hhccCCCCCcHhHHHHHcCCHHHHHHHHhCC-ccc-------ccccCCCCCcHHH
Q 007515           51 LTARFGHEELASEILKLCP--EM--VAAENEKMETPLHEACREGRLNFVKLFVGID-PSV-------IYKLNRDNESVLY  118 (600)
Q Consensus        51 ~Aa~~g~~e~v~~Ll~~~~--~~--l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~-~~~-------~~~~~~~g~tpL~  118 (600)
                      -|++.|.......|+....  ++  +--...+|.|||-.||++||.++|++|+++. ++.       ..-.+.+|.+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            6788888877777776532  11  2334567889999999999999999999843 221       1122457889999


Q ss_pred             HHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHH
Q 007515          119 VACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE  198 (600)
Q Consensus       119 ~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  198 (600)
                      .|+..||.++|+.|++++++++.......|||-.||..|+.+++++|++++.++. ..|..|.|.||+||.+|+.+++++
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh~~I~qy  168 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGHVDIAQY  168 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCchHHHHH
Confidence            9999999999999999999998877778899999999999999999999999987 889999999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHH
Q 007515          199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM  268 (600)
Q Consensus       199 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll  268 (600)
                      |++.|+|++. ++..|+|+||.|++.|++|+++.|++.+.  .-.+|..|.|||..|...|+.+++++|+
T Consensus       169 Lle~gADvn~-ks~kGNTALH~caEsG~vdivq~Ll~~ga--~i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  169 LLEQGADVNA-KSYKGNTALHDCAESGSVDIVQLLLKHGA--KIDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHhCCCcch-hcccCchHHHhhhhcccHHHHHHHHhCCc--eeeecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999976 88999999999999999999999999873  4456778999999999999999999998

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.3e-29  Score=264.22  Aligned_cols=297  Identities=15%  Similarity=0.082  Sum_probs=210.9

Q ss_pred             CCCCcHHHH-HHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHH-cCCHHHHHHHHhCCccc---------------
Q 007515           43 GSLNTILHL-TARFGHEELASEILKLCPEMVAAENEKMETPLHEACR-EGRLNFVKLFVGIDPSV---------------  105 (600)
Q Consensus        43 ~~g~T~Lh~-Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~-~g~~~iv~~Ll~~~~~~---------------  105 (600)
                      -+|.+++|+ |...|+.|+|++|+++|++ ++.++..|.||||+|+. .++.+++++|++.|++.               
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhc
Confidence            345556663 4556777888888887776 66666667788788755 57788888888777541               


Q ss_pred             --------------------ccccCCCCCcHHHHHHHhC-------CHHHHHHHHhCCcccccccCCCChHHHHHHhcC-
Q 007515          106 --------------------IYKLNRDNESVLYVACERG-------RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG-  157 (600)
Q Consensus       106 --------------------~~~~~~~g~tpL~~A~~~g-------~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g-  157 (600)
                                          ....+..|.||||+|+.++       +.|++++|+++|++.+..+..|.||||.|+.+. 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence                                1123455778888888777       678888888888777766667777888888777 


Q ss_pred             -CHHHHHHHHhcCccccc------------------cCCC-------CCCh-----------------------------
Q 007515          158 -HLDIVKELLEARQEFAW------------------KKDL-------NGHT-----------------------------  182 (600)
Q Consensus       158 -~~~~v~~Ll~~~~~~~~------------------~~d~-------~g~t-----------------------------  182 (600)
                       ..|+++.|++.......                  ..|.       .|.+                             
T Consensus       228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q  307 (631)
T PHA02792        228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ  307 (631)
T ss_pred             chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence             66777777653211000                  0000       0111                             


Q ss_pred             -HHHHHHhcC--cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc--ccchhhHhHh
Q 007515          183 -PLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH--GETVLHLTVK  257 (600)
Q Consensus       183 -pLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~--g~t~Lh~Av~  257 (600)
                       -||.=...+  +.+++++|++.|++..   ......+++.|+..|+.++++.|++.| ++++..|..  +.||||.|..
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~G-ADIN~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNG-NVVVEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcC-CchhhhcCCCCChhHHHHHHH
Confidence             111111222  4578888888888863   223566799999999999999999988 456667766  4699999887


Q ss_pred             cCchh---HHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCC----
Q 007515          258 NNQYE---AVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN----  330 (600)
Q Consensus       258 ~~~~~---iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~----  330 (600)
                      ....+   ++++|++.   ++++|.+|..|.||||+|+..++.+++++|+++|+++|.+|..|.||+++|...+..    
T Consensus       384 n~~~~v~~IlklLIs~---GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~  460 (631)
T PHA02792        384 IHESDVLSILKLCKPY---IDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPE  460 (631)
T ss_pred             hccHhHHHHHHHHHhc---CCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHH
Confidence            76654   46666666   668999999999999999999999999999999999999999999999998653322    


Q ss_pred             --cchhhHHHHHHHhcccc
Q 007515          331 --SGALQIVPALEEAGARR  347 (600)
Q Consensus       331 --~~~~~i~~~L~~~ga~~  347 (600)
                        ....++++.|+..|+..
T Consensus       461 i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        461 IAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHHHHHHHHhcCCCh
Confidence              12345788888887543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.1e-29  Score=259.59  Aligned_cols=207  Identities=28%  Similarity=0.361  Sum_probs=153.3

Q ss_pred             HHHHHHHhCCHHHHHHHHhC-CcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHH
Q 007515          116 VLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE  194 (600)
Q Consensus       116 pL~~A~~~g~~e~v~~Ll~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  194 (600)
                      -++.|+..|..+.++.|++. +.+++..++.|.++||+|+.+++.+++++|++++++++..-..-+.||||+|+++|+..
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~  126 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS  126 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence            34555555555555555555 55555555555556666666666666666666666555332245678888888888888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccc
Q 007515          195 ITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT  274 (600)
Q Consensus       195 iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  274 (600)
                      +++.|+++|+++.. .|.+|.+|||+|++.|+.-++-+++.++ .+++.+|.+|+||||+|+.+|....+..|++.   +
T Consensus       127 vv~lLlqhGAdpt~-~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f---~  201 (600)
T KOG0509|consen  127 VVDLLLQHGADPTL-KDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF---G  201 (600)
T ss_pred             HHHHHHHcCCCCce-ecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh---c
Confidence            88888888888755 7888888888888888888888888777 67777888888888888888777767777665   4


Q ss_pred             cccCCCC-CCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhh
Q 007515          275 KLANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD  327 (600)
Q Consensus       275 ~~~n~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~  327 (600)
                      ..++..| .+|+||||+|+..|+..++++|++.|++.+.+|.+|+||+++|.+.
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            4566666 8999999999999999999966799999999999999999997654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=252.35  Aligned_cols=211  Identities=26%  Similarity=0.329  Sum_probs=172.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCC
Q 007515           46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGR  125 (600)
Q Consensus        46 ~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  125 (600)
                      .+-++.|+++|..+.|+.+++.....++..|.+|-|+||+||.+++.+++++|++++++++..-..-+.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            45677888888888888888873334778888888888888888888888888888888866655677888888888888


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCC
Q 007515          126 LDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD  205 (600)
Q Consensus       126 ~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  205 (600)
                      ..+|++|+++|+++...+..|.+++|.|++.|+.-++-+++.++.+.+ .+|.+|+||||+|+.+|+...++.||+.+++
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            888888888888888888888888888888888888888888886665 7888888888888888887778888888888


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhc
Q 007515          206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  258 (600)
Q Consensus       206 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~  258 (600)
                      +....|.+|.||||+|+..|+..++. |+..+....+..|.+|+||+.+|.+.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            87766688888888888888888888 66666677788888888888888666

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.1e-27  Score=247.18  Aligned_cols=286  Identities=10%  Similarity=0.120  Sum_probs=227.5

Q ss_pred             HHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHH-hCCHHHHHHHHHhCch-----------------------
Q 007515           15 FETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTAR-FGHEELASEILKLCPE-----------------------   70 (600)
Q Consensus        15 ~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~-~g~~e~v~~Ll~~~~~-----------------------   70 (600)
                      +-+...|++|.++.|++++.+. + ..+..|+|+||+|+. .|+.|++++|++.|++                       
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdv-N-~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~  154 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEI-N-SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYN  154 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCc-c-cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccc
Confidence            4466789999999999987663 3 335568999999976 6999999999999853                       


Q ss_pred             ------------hhhccCCCCCcHhHHHHHcC-------CHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC--CHHHH
Q 007515           71 ------------MVAAENEKMETPLHEACREG-------RLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG--RLDVA  129 (600)
Q Consensus        71 ------------~l~~~n~~g~TpLh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~e~v  129 (600)
                                  .++..|..|.||||+|+.++       +.+++++|+++|+++... +..|.||||+|+.+.  +.|++
T Consensus       155 ~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~-d~~g~t~l~~~~~~~~i~~ei~  233 (631)
T PHA02792        155 WDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY-TYREHTTLYYYVDKCDIKREIF  233 (631)
T ss_pred             hhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc-CCCCChHHHHHHHcccchHHHH
Confidence                        13355678999999999999       899999999999998654 788999999999999  89999


Q ss_pred             HHHHhCCcccc-------------c--cc------------CCCC-----------------------------hHHHHH
Q 007515          130 KQLLNYSSLLI-------------L--EV------------DGLT-----------------------------TSLHVS  153 (600)
Q Consensus       130 ~~Ll~~~~~~~-------------~--~~------------~~~~-----------------------------t~Lh~A  153 (600)
                      +.|++......             .  .+            +++.                             -.||.-
T Consensus       234 ~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Y  313 (631)
T PHA02792        234 DALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEY  313 (631)
T ss_pred             HHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            99986422100             0  00            0010                             124444


Q ss_pred             HhcC--CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC--CCCHHHHHHHcCCHH-
Q 007515          154 AMAG--HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE--GRTPLHWAAIKGRIN-  228 (600)
Q Consensus       154 ~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~--g~tpL~~Aa~~g~~~-  228 (600)
                      ...+  +.++++.|+++|.+..   ......+++.||..|+.+++++|+++|+++.. .|.+  +.||||.|+.....+ 
T Consensus       314 l~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~-kD~~g~~~TpLh~A~~n~~~~v  389 (631)
T PHA02792        314 VSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVVE-DDDNIINIMPLFPTLSIHESDV  389 (631)
T ss_pred             HhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchhh-hcCCCCChhHHHHHHHhccHhH
Confidence            4444  5789999999998864   22356689999999999999999999999865 5665  469999988776654 


Q ss_pred             --HHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHh---C-------Cc
Q 007515          229 --IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA---G-------KL  296 (600)
Q Consensus       229 --~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~---~-------~~  296 (600)
                        +++.+++.+ ++++.+|..|+||||+|+..++.+++++|++.   ++++|.+|..|+||||+|+.   .       ..
T Consensus       390 ~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~---GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~  465 (631)
T PHA02792        390 LSILKLCKPYI-DDINKIDKHGRSILYYCIESHSVSLVEWLIDN---GADINITTKYGSTCIGICVILAHACIPEIAELY  465 (631)
T ss_pred             HHHHHHHHhcC-CccccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHH
Confidence              577778777 57888999999999999999999999999998   67899999999999999975   2       23


Q ss_pred             HHHHHHHHhcCCCcc
Q 007515          297 TTMVIYLLKLGVDVN  311 (600)
Q Consensus       297 ~~iv~~Ll~~gad~n  311 (600)
                      .++++.|+++|.+++
T Consensus       466 ~~il~lLLs~~p~i~  480 (631)
T PHA02792        466 IKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHhcCCChh
Confidence            567899999998876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=213.56  Aligned_cols=173  Identities=20%  Similarity=0.239  Sum_probs=147.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC--cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Q 007515          146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWAAI  223 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  223 (600)
                      +.+|||.|+..|+.+.++.|++.    .+..|..|.||||+|+..+  +.+++++|+++|++++...+..|.||||+|+.
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            45688888888888888888864    2356788999999998754  89999999999999876434589999999876


Q ss_pred             c---CCHHHHHHHHhccccccccccccccchhhHhHh--cCchhHHHHHHHhcccccccCCCCCCCChHhHH-HHhCCcH
Q 007515          224 K---GRINIIDEILSLNLQSAEMRTIHGETVLHLTVK--NNQYEAVKYLMETLNITKLANMPDNDGNTILHL-ATAGKLT  297 (600)
Q Consensus       224 ~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~--~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~-A~~~~~~  297 (600)
                      .   ++.++++.|++.+ .+++.+|..|.||||.|+.  .++.+++++|++.   +.+++.+|.+|+||||. |+..++.
T Consensus        97 ~~~~~~~eiv~~Ll~~g-adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~---gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         97 FNKNVEPEILKILIDSG-SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS---GVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             hCccccHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc---CCCcccccCCCCcHHHHHHHhcCCH
Confidence            3   4789999999876 5778899999999999886  4689999999987   66789999999999996 5678899


Q ss_pred             HHHHHHHhcCCCcccccCCCCCHHHHHhh
Q 007515          298 TMVIYLLKLGVDVNAINRKGYTALDVVES  326 (600)
Q Consensus       298 ~iv~~Ll~~gad~n~~n~~G~T~l~~a~~  326 (600)
                      +++++|++.|++++.+|..|.||+++|..
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            99999999999999999999999999754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=8.4e-25  Score=207.86  Aligned_cols=177  Identities=18%  Similarity=0.186  Sum_probs=142.3

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC--CHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG--RLNFVKLFVGIDPSVIYKLNRDNESVLYVA  120 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  120 (600)
                      ..+.||||.|+..|+.+.|+.|++.    .+..|..|.||||+|+..+  +.+++++|++.++++....+..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            3467899999999999999999874    4567888999999998754  899999999999988655446789999988


Q ss_pred             HHh---CCHHHHHHHHhCCcccccccCCCChHHHHHHh--cCCHHHHHHHHhcCccccccCCCCCChHHHH-HHhcCcHH
Q 007515          121 CER---GRLDVAKQLLNYSSLLILEVDGLTTSLHVSAM--AGHLDIVKELLEARQEFAWKKDLNGHTPLHL-SCSKGHLE  194 (600)
Q Consensus       121 ~~~---g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~-A~~~g~~~  194 (600)
                      +..   ++.+++++|++++++++..+..|.||||.|+.  .++.++++.|++.+.++. .+|.+|.||||. |+..++.+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin-~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc-cccCCCCcHHHHHHHhcCCHH
Confidence            764   46888888888888888877888888888775  357888888888887776 677888888885 45667888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          195 ITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       195 iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      ++++|+++|+++.. +|..|.|||++|+.++
T Consensus       174 iv~~Ll~~Gadi~~-~d~~g~tpl~la~~~~  203 (209)
T PHA02859        174 IFDFLTSLGIDINE-TNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHcCCCCCC-CCCCCCCHHHHHhhhh
Confidence            88888888887754 7778888888887654

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=8.2e-26  Score=191.41  Aligned_cols=109  Identities=33%  Similarity=0.652  Sum_probs=94.7

Q ss_pred             HHhhhhhcchhHHHHHHHHHHhhcccccCCCCcccc---CCcccccCCc-cchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 007515          403 TEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQV---SGKSLVGKQT-SFKVFMVCNIVALFLSLGIVIFLVSIIPFQ  478 (600)
Q Consensus       403 ~e~l~~~~~~~~vva~Liatv~f~a~~~~Pgg~~~~---~g~~~~~~~~-~f~~f~~~~~~a~~~S~~~~~~~~~~~~~~  478 (600)
                      +||++++|++++|||+||||||||||+|||||+||+   .|+|++.+++ .|++|+++|++||++|+++++++++.+...
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            368889999999999999999999999999999876   6999997777 999999999999999999998888533222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Q 007515          479 RKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTI  511 (600)
Q Consensus       479 ~~~~~~~l~~~~~~~~~~~~~~~~af~~~~~~~  511 (600)
                      .+..++.+.++..+||+++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            344556677888899999999999999999875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=6.2e-26  Score=240.28  Aligned_cols=297  Identities=25%  Similarity=0.266  Sum_probs=210.4

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  122 (600)
                      .+-+|+|..||..||.|+|+.|+.+|+. ++.+|.+|.+||.+|+..||..+|+.|+.+.+++....|+.+.|+|.+||.
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            3456777777877888888777777777 677777778888777777777777777777777777777777777777777


Q ss_pred             hCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCC-CCCChHHHHHHhcCcHHHHHHHHh
Q 007515          123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKD-LNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       123 ~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      .|..++|++|+..+++....+-...|||.+|...|..++++.|+..+.+++.... ..|-+||.+|..+||.+.++.|++
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            7777777777777776655555555677777777777777777777776663322 346777777777777777777777


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCC--
Q 007515          202 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--  279 (600)
Q Consensus       202 ~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~--  279 (600)
                      .|.+++.....+-+|.|-+|+..|+.|++..||... ...+.+...|-|||+-++..|..++=++|+..   +++.|.  
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~AsgGyvdvg~~li~~---gad~nasP  989 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA---GADTNASP  989 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhcCCccccchhhhhc---ccccccCC
Confidence            777777666666677777777777777777777765 46666777777777777777777777777766   333332  


Q ss_pred             CCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       280 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      .-....|+|-+++..|+.+.|..|+...+.++.+|++|.|+|.+    +...+++..+.+|.+.+++..
T Consensus       990 vp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwl----a~~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen  990 VPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWL----ASAGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred             CCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccch----hccCCccccchHHhhcccChh
Confidence            12334566777777777777777776667777777777777766    455566666666666666543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=3.3e-24  Score=218.89  Aligned_cols=190  Identities=21%  Similarity=0.155  Sum_probs=130.3

Q ss_pred             HHHhcCCHHHHHHHHhcCcccc-----ccCCCCCChHHHHHHh--cCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc
Q 007515          152 VSAMAGHLDIVKELLEARQEFA-----WKKDLNGHTPLHLSCS--KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK  224 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  224 (600)
                      .|+..+..++++.|+.++.+.+     ..++.+++|+||.++.  .|+.+++++|+++|+++..   .++.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHc
Confidence            4445555555555555554432     1245557777777777  6777777777777777643   2346777777777


Q ss_pred             CCHHHHHHHHhccccccccc-----cccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHH
Q 007515          225 GRINIIDEILSLNLQSAEMR-----TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTM  299 (600)
Q Consensus       225 g~~~~v~~Ll~~~~~~~~~~-----~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~i  299 (600)
                      |+.++++.|++++....+..     +..+.+++|.|..+++.+++++|++.   ++++|.+|..|+||||+|+..|+.++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~---GADIN~kD~~G~TpLh~Aa~~g~~ei  236 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY---IEDINQLDAGGRTLLYRAIYAGYIDL  236 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC---cCCcCcCCCCCCCHHHHHHHcCCHHH
Confidence            77777777777764322222     13466778888888888888888876   56778888888888888888888888


Q ss_pred             HHHHHhcCCCcccccCCCCCHHHHHhhhcC----CcchhhHHHHHHHhcccc
Q 007515          300 VIYLLKLGVDVNAINRKGYTALDVVESDAS----NSGALQIVPALEEAGARR  347 (600)
Q Consensus       300 v~~Ll~~gad~n~~n~~G~T~l~~a~~~a~----~~~~~~i~~~L~~~ga~~  347 (600)
                      +++|+++|+++|.+|..|.||||+|.....    ..++.+++++|++.|++.
T Consensus       237 VelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        237 VSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            888888888888888888888888765442    234567888888877643

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.92  E-value=1e-25  Score=238.64  Aligned_cols=313  Identities=19%  Similarity=0.228  Sum_probs=279.4

Q ss_pred             CccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHH
Q 007515            7 NPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEA   86 (600)
Q Consensus         7 ~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~A   86 (600)
                      .+..+..|--|+..|..|.+..++.++...  ...|+.|-++|.+|+..||..+|+.|++...++-...|..++|+|.+|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgani--ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANI--EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccc--cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence            445667788899999999999999987664  567889999999999999999999999999997778899999999999


Q ss_pred             HHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccc--cCCCChHHHHHHhcCCHHHHHH
Q 007515           87 CREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE--VDGLTTSLHVSAMAGHLDIVKE  164 (600)
Q Consensus        87 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~--~~~~~t~Lh~A~~~g~~~~v~~  164 (600)
                      |..|..++|++||..+++-. .+|....|||.+|...|..++++.|+..|..++..  ...|..||.+|..+||.+.++.
T Consensus       832 csggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             cCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence            99999999999999998774 45888999999999999999999999999887643  3445679999999999999999


Q ss_pred             HHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-cc
Q 007515          165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA-EM  243 (600)
Q Consensus       165 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~-~~  243 (600)
                      |++.+.+++.....+.+|+|-+|+..|+.+++.+||...+.+.. +-..|.|||+-++..|.+|+=..|+..+.+.. ..
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anveh-Raktgltplme~AsgGyvdvg~~li~~gad~nasP  989 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEH-RAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASP  989 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhh-hcccCCcccchhhcCCccccchhhhhcccccccCC
Confidence            99999999988888999999999999999999999999988754 78889999999999999999999999886532 23


Q ss_pred             ccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHH
Q 007515          244 RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV  323 (600)
Q Consensus       244 ~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~  323 (600)
                      .-....|+|-+++..|+.+.+..|+..   .+-+..++++|+|+|.+|+..|....+.+|++.++|++..|+.-.+++.-
T Consensus       990 vp~T~dtalti~a~kGh~kfv~~lln~---~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~ma 1066 (2131)
T KOG4369|consen  990 VPNTWDTALTIPANKGHTKFVPKLLNG---DATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMA 1066 (2131)
T ss_pred             CCCcCCccceeecCCCchhhhHHhhCC---ccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHH
Confidence            345677999999999999999999875   55678899999999999999999999999999999999999999999887


Q ss_pred             Hhh
Q 007515          324 VES  326 (600)
Q Consensus       324 a~~  326 (600)
                      |.+
T Consensus      1067 afR 1069 (2131)
T KOG4369|consen 1067 AFR 1069 (2131)
T ss_pred             HHH
Confidence            544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=5.3e-24  Score=217.37  Aligned_cols=230  Identities=12%  Similarity=0.017  Sum_probs=164.3

Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccc------cccCCCChHHHHHHh--cCCHHHHHHHH
Q 007515           95 VKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI------LEVDGLTTSLHVSAM--AGHLDIVKELL  166 (600)
Q Consensus        95 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~------~~~~~~~t~Lh~A~~--~g~~~~v~~Ll  166 (600)
                      .++++.++.++... ..++     +|+..+..|++++|+.++.+++      ......+|+||.++.  .|+.+++++|+
T Consensus        65 ~~~~~~~~~~i~~~-~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         65 YDYFRIHRDNIDQY-IVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHcCcchhhh-hhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            34555665555322 2222     6666677777777777766655      344556677777777  67777777777


Q ss_pred             hcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCC-----CCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 007515          167 EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP-----DNEGRTPLHWAAIKGRINIIDEILSLNLQSA  241 (600)
Q Consensus       167 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-----d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~  241 (600)
                      ++|+++..   .++.||||.|+..++.+++++|+++|++.....     +..+.+|+|.|+..++.++++.|++.+ +++
T Consensus       139 ~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADI  214 (437)
T PHA02795        139 DHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDI  214 (437)
T ss_pred             HCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCc
Confidence            77777652   234678888777777888888887776433211     124678888888888888888888877 567


Q ss_pred             ccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC--------cHHHHHHHHhcCCCcccc
Q 007515          242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK--------LTTMVIYLLKLGVDVNAI  313 (600)
Q Consensus       242 ~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~--------~~~iv~~Ll~~gad~n~~  313 (600)
                      +.+|..|+||||+|+..|+.+++++|++.   ++++|.+|..|.||||+|+..|        +.+++++|+++|++++..
T Consensus       215 N~kD~~G~TpLh~Aa~~g~~eiVelLL~~---GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        215 NQLDAGGRTLLYRAIYAGYIDLVSWLLEN---GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            78888888888888888888888888877   6778999999999999999988        468999999999999875


Q ss_pred             cCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          314 NRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       314 n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      ...+   +..      .....++++.+++.+..
T Consensus       292 ~~~~---~~~------~~~n~~~ik~lI~y~~~  315 (437)
T PHA02795        292 KLAI---LNN------TIENHDVIKLCIKYFMM  315 (437)
T ss_pred             hHHh---hhc------ccchHHHHHHHHHHHHh
Confidence            5322   111      11256788888887754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.4e-22  Score=229.43  Aligned_cols=253  Identities=17%  Similarity=0.138  Sum_probs=177.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHh--CchhhhccCCCCCcHhH-HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 007515           44 SLNTILHLTARFGHEELASEILKL--CPEMVAAENEKMETPLH-EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVA  120 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~--~~~~l~~~n~~g~TpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  120 (600)
                      .+++.++.||+.|+.+.|+.+++.  +.+ ++..|..|+|||| .|+.+++.+++++|++.+.     .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            457888899999999999888887  434 6778888999999 8888888889998888776     467888999888


Q ss_pred             HHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHH
Q 007515          121 CERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL  200 (600)
Q Consensus       121 ~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  200 (600)
                      +. +..+.++.++........  ..+  +.             .+.   .+.....+..|.||||+||.+|+.++++.|+
T Consensus        90 ~~-~~~~~v~~ll~~l~~~~~--~~~--~~-------------~~~---~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL  148 (743)
T TIGR00870        90 SL-EYVDAVEAILLHLLAAFR--KSG--PL-------------ELA---NDQYTSEFTPGITALHLAAHRQNYEIVKLLL  148 (743)
T ss_pred             Hh-ccHHHHHHHHHHHhhccc--ccC--ch-------------hhh---ccccccccCCCCcHHHHHHHhCCHHHHHHHH
Confidence            76 333333333332211110  000  10             000   0111122446888888888888888888888


Q ss_pred             hcCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcC--------
Q 007515          201 KLDPDLSSLP-------------DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN--------  259 (600)
Q Consensus       201 ~~~~~~~~~~-------------d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~--------  259 (600)
                      ++|++++...             ...|.+|||.|+..|+.++++.|++.+ .+++..|..|+||||+|+..+        
T Consensus       149 ~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~~~~~~~  227 (743)
T TIGR00870       149 ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMENEFKAEYEE  227 (743)
T ss_pred             hCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhhhhhHHHHH
Confidence            8888775321             135889999999999999999888865 567788888999999998876        


Q ss_pred             -chhHHHHHHHhccccccc----CCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          260 -QYEAVKYLMETLNITKLA----NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       260 -~~~iv~~Ll~~~~~~~~~----n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                       ...+.+++++........    +..|.+|.||||+|+..|+.+++++|++.+.+..........|.+.+
T Consensus       228 l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       228 LSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             HHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHh
Confidence             233555666554433333    67889999999999999999999999987766655555666666554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=2.1e-23  Score=215.91  Aligned_cols=247  Identities=26%  Similarity=0.278  Sum_probs=173.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhC------------chhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCC
Q 007515           47 TILHLTARFGHEELASEILKLC------------PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNE  114 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~------------~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~  114 (600)
                      +=|--|++.|+.+.|..+|+..            ++-.+..|.+|.|+||.||.+|+.+++++|++..+-+. ..+..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh-hhhccCc
Confidence            3466788888888888888752            12356667777788888888888888887777766553 3356777


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHH
Q 007515          115 SVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE  194 (600)
Q Consensus       115 tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  194 (600)
                      +|||+|+.+|+.|+++.++.+++.++.....+.+|||.|++.||.+++.+|+.++.+.. ..|.++.|+|.+|++-|..+
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhH
Confidence            77777777777777777777776666666666666666666666666666666666655 55666666666666666666


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccc
Q 007515          195 ITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT  274 (600)
Q Consensus       195 iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  274 (600)
                      +++.|++..-....                        +..   .....++..+-++||+|+++|+.++++.|++.   +
T Consensus       163 Vvq~ll~~~~~~~~------------------------~~~---~~~~~~~~~~~~plHlaakngh~~~~~~ll~a---g  212 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQS------------------------SLR---VGDIKRPFPAIYPLHLAAKNGHVECMQALLEA---G  212 (854)
T ss_pred             HHHHHhhhccchhh------------------------ccc---CCCCCCCCCCcCCcchhhhcchHHHHHHHHhc---C
Confidence            66666655111100                        000   11234455677888899988888888888887   5


Q ss_pred             cccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhh
Q 007515          275 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  326 (600)
Q Consensus       275 ~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~  326 (600)
                      -++|...++| |+||-|+..|..++|.+|++.|++..++|.+|+|+||+...
T Consensus       213 ~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  213 FDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             CCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence            5677666655 89999999999999999999999999999999999998754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=4.6e-24  Score=189.61  Aligned_cols=264  Identities=22%  Similarity=0.216  Sum_probs=205.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCH
Q 007515           47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRL  126 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  126 (600)
                      ..+..++..|-.+.-..+.....   ..++..|+.-+-.|.+.|+.+++..++..+++-+...+.+|.++++.++-.++.
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s---~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~  109 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEIS---ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSV  109 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHH---HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCc
Confidence            45666666666665555555432   345667777888888899988888888877777777778888999988888888


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCC
Q 007515          127 DVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL  206 (600)
Q Consensus       127 e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  206 (600)
                      +.+..++.++...+..+--+.+|+.+++...+.+.+..+.+.   ..+..|+.|.|||.+|+.+|+.++|++||+.|+++
T Consensus       110 ~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp  186 (296)
T KOG0502|consen  110 DKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP  186 (296)
T ss_pred             ceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh
Confidence            888888888776665555666788888888777777666554   33477889999999999999999999999999987


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCCh
Q 007515          207 SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT  286 (600)
Q Consensus       207 ~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T  286 (600)
                      .. ..+.-.++|.+|+..|..++|+.|++..+ +++..|.+|-|||.+|++.++.++++.|+..   +++++..|..|++
T Consensus       187 ~~-lgk~resALsLAt~ggytdiV~lLL~r~v-dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~  261 (296)
T KOG0502|consen  187 DA-LGKYRESALSLATRGGYTDIVELLLTREV-DVNVYDWNGGTPLLYAVRGNHVKCVESLLNS---GADVTQEDDSGYW  261 (296)
T ss_pred             hh-hhhhhhhhHhHHhcCChHHHHHHHHhcCC-CcceeccCCCceeeeeecCChHHHHHHHHhc---CCCcccccccCCc
Confidence            55 45666788999998899999988888774 6777788888888888888888888888776   6778888888888


Q ss_pred             HhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHH
Q 007515          287 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD  322 (600)
Q Consensus       287 ~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~  322 (600)
                      ++.+|+..|+- +|+..+++-+..+.+|+.-.||+|
T Consensus       262 ~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  262 IMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            88888888876 777777777777777776666653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=4e-23  Score=233.96  Aligned_cols=286  Identities=15%  Similarity=0.079  Sum_probs=189.6

Q ss_pred             ccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHH-HHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHH
Q 007515            8 PYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILH-LTARFGHEELASEILKLCPEMVAAENEKMETPLHEA   86 (600)
Q Consensus         8 ~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh-~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~A   86 (600)
                      ...+..++.|+..||.+.++.++++......+..|..|.|||| .|+..++.++++.|++.+.     .+..|+||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            4567899999999999999999988433223456778999999 8999999999999999876     678899999999


Q ss_pred             HHcC---CHHHHHHHHhCCcc-----cc----cccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHH
Q 007515           87 CREG---RLNFVKLFVGIDPS-----VI----YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSA  154 (600)
Q Consensus        87 a~~g---~~~iv~~Ll~~~~~-----~~----~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~  154 (600)
                      +..+   ...+++.+...++.     ..    ...+..|.||||+|+.+|+.+++++|+++|++++....+.. ..    
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~-~~----  164 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF-FV----  164 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch-hh----
Confidence            8732   22334444443322     11    11234689999999999999999999999988874322211 00    


Q ss_pred             hcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC---------
Q 007515          155 MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG---------  225 (600)
Q Consensus       155 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g---------  225 (600)
                                   ....  ......|.||||.|+..|+.+++++|++.+++++. .|..|+||||+|+..+         
T Consensus       165 -------------~~~~--~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~-~d~~g~T~Lh~A~~~~~~~~~~~~l  228 (743)
T TIGR00870       165 -------------KSQG--VDSFYHGESPLNAAACLGSPSIVALLSEDPADILT-ADSLGNTLLHLLVMENEFKAEYEEL  228 (743)
T ss_pred             -------------cCCC--CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh-HhhhhhHHHHHHHhhhhhhHHHHHH
Confidence                         0000  01224577888888888888888888888877654 6777888888888776         


Q ss_pred             CHHHHHHHHhcccc--cc----ccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhC-----
Q 007515          226 RINIIDEILSLNLQ--SA----EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG-----  294 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~--~~----~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~-----  294 (600)
                      ...+.+.+++....  ..    ...|.+|.||||+|+..|+.+++++|++..   ..........+.|.+++...     
T Consensus       229 ~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~---~~~kk~~a~~~~~~~~~~~~~~~~~  305 (743)
T TIGR00870       229 SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK---YKQKKFVAWPNGQQLLSLYWLEELD  305 (743)
T ss_pred             HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH---HhcceeeccCcchHhHhhhccccCC
Confidence            12233444433211  11    446778888888888888888888887742   11233345666677666542     


Q ss_pred             ---CcHHHHHHHHhcCC---CcccccCCCCCHHH
Q 007515          295 ---KLTTMVIYLLKLGV---DVNAINRKGYTALD  322 (600)
Q Consensus       295 ---~~~~iv~~Ll~~ga---d~n~~n~~G~T~l~  322 (600)
                         ....+.++++..++   .++..+..+.+|+.
T Consensus       306 ~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~P~~  339 (743)
T TIGR00870       306 GWRRKQSVLELIVVFVIGLKFPELSDMYLIAPLS  339 (743)
T ss_pred             cccccccHHHHHHHHHHhhcChHHHHHHHHhhhH
Confidence               12245555555443   23455555556654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-23  Score=215.30  Aligned_cols=254  Identities=24%  Similarity=0.350  Sum_probs=214.0

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchh-----------hhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCC
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEA-----------KIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEK   78 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~-----------~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~   78 (600)
                      +.+.+..|++.||.+.+..+++....           .-....|.+|.|+||.||.+|+.++++.|++..+. +...+.+
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~k   81 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTK   81 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhcc
Confidence            67889999999999999999985421           11123455799999999999999999999998776 7777899


Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC
Q 007515           79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH  158 (600)
Q Consensus        79 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (600)
                      |.+|||+|+..|+.+++++++..+ +..+..+.+|+||||.|+.+|+.|++.+|++++++....+..+.|+|-.|++.|.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence            999999999999999999999988 4456668999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccc-------cccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 007515          159 LDIVKELLEARQEF-------AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID  231 (600)
Q Consensus       159 ~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~  231 (600)
                      .++++.|++..-..       ...++..+-+|||+|+.+||.++++.|++.|-+++..  .+.-|+||.|+..|..++|.
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~--t~~gtalheaalcgk~evvr  238 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT--TEDGTALHEAALCGKAEVVR  238 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc--cccchhhhhHhhcCcchhhh
Confidence            99999999873221       1234556788999999999999999999999998763  34569999999999999999


Q ss_pred             HHHhccccccccccccccchhhHhHhc---CchhHHHHHH
Q 007515          232 EILSLNLQSAEMRTIHGETVLHLTVKN---NQYEAVKYLM  268 (600)
Q Consensus       232 ~Ll~~~~~~~~~~~~~g~t~Lh~Av~~---~~~~iv~~Ll  268 (600)
                      .|++.+ .+...++.+|+|+|.+-...   ...+++-++.
T Consensus       239 ~ll~~g-in~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  239 FLLEIG-INTHIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             HHHhhc-cccccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence            999987 57788899999998776543   3344444443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.5e-22  Score=230.57  Aligned_cols=173  Identities=27%  Similarity=0.332  Sum_probs=158.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      ..++||.|+..|+.++++.|++.+.+++ ..|.+|+||||+|+..|+.++++.|+++|++++. +|.+|+||||.|+..|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNAISAK  602 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHHHHhC
Confidence            4569999999999999999999999887 7899999999999999999999999999999865 8999999999999999


Q ss_pred             CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          226 RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      +.++++.|++.+...   ....|.++||.|+.+|+.+++++|++.   +.++|.+|.+|+||||+|+..|+.+++++|++
T Consensus       603 ~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~---Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        603 HHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQ---GLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             CHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            999999999765322   234678999999999999999999987   67899999999999999999999999999999


Q ss_pred             cCCCcccccCCC-CCHHHHHhh
Q 007515          306 LGVDVNAINRKG-YTALDVVES  326 (600)
Q Consensus       306 ~gad~n~~n~~G-~T~l~~a~~  326 (600)
                      +|+|++..|..| .||++++..
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999998 999988643

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=3e-23  Score=184.48  Aligned_cols=266  Identities=21%  Similarity=0.206  Sum_probs=220.3

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE   89 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~   89 (600)
                      --.+++.++..|-.+.-..+......    ..+..|+..+-.|.+.|+.+.+...+..+++.+...+..|..++|.|+-+
T Consensus        31 q~a~~~~~~~m~~t~p~~~l~~~~s~----~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~  106 (296)
T KOG0502|consen   31 QIAELFEQVEMGTTEPRCALTAEISA----LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPC  106 (296)
T ss_pred             HHHHHHHHhhccccchhHHHHHHHHH----HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCC
Confidence            34567777777777666665554322    23456788889999999999999999998887778888899999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcC
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR  169 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~  169 (600)
                      |+...+..++..+...+ ..+--+.+|+.+++...+.+.+..+.+.  .++..+..|.|||.+|+..|+.++|++|++.+
T Consensus       107 ~s~~k~sttltN~~rgn-evs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~G  183 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGARGN-EVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSG  183 (296)
T ss_pred             CCcceeeeeecccccCC-ccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcC
Confidence            99999999998877764 3477889999999999988888776654  34566778889999999999999999999999


Q ss_pred             ccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccc
Q 007515          170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE  249 (600)
Q Consensus       170 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  249 (600)
                      +++. .......|+|.+|++.|..++|++||+++.+++. .|.+|-|||.+|++.|+.++++.|+..+ +..+..+..|+
T Consensus       184 Adp~-~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv-yDwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy  260 (296)
T KOG0502|consen  184 ADPD-ALGKYRESALSLATRGGYTDIVELLLTREVDVNV-YDWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGY  260 (296)
T ss_pred             CChh-hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce-eccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCC
Confidence            9886 5666778999999999999999999999999865 7999999999999999999999999988 57788888999


Q ss_pred             chhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhH
Q 007515          250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  289 (600)
Q Consensus       250 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  289 (600)
                      +++..|+..|.. +++.++++   ..+.+.+|..-.||+|
T Consensus       261 ~~mdlAValGyr-~Vqqvie~---h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  261 WIMDLAVALGYR-IVQQVIEK---HALKLCQDSEKRTPLH  296 (296)
T ss_pred             cHHHHHHHhhhH-HHHHHHHH---HHHHHhhcccCCCCCC
Confidence            999999999987 77777776   3445667777777775

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=7.6e-22  Score=198.08  Aligned_cols=203  Identities=29%  Similarity=0.382  Sum_probs=128.2

Q ss_pred             HHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHH
Q 007515          119 VACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE  198 (600)
Q Consensus       119 ~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  198 (600)
                      -|+..|..+-++.|+..+..++..+.+|.|+||.++...+.+||++|++.+.+++ ..|..||||||.|+..|+..++++
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~~~i~~~  124 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGYLNIVEY  124 (527)
T ss_pred             hccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcchhhcccccHHHHHH
Confidence            3444444444444444444444444444445555555555555555555444444 444455555555555555555555


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHH----------------------H-cCCH---HHHHHHHhccccccccccccccchh
Q 007515          199 LLKLDPDLSSLPDNEGRTPLHWAA----------------------I-KGRI---NIIDEILSLNLQSAEMRTIHGETVL  252 (600)
Q Consensus       199 Ll~~~~~~~~~~d~~g~tpL~~Aa----------------------~-~g~~---~~v~~Ll~~~~~~~~~~~~~g~t~L  252 (600)
                      |+.+|++... .+.+|..|..++.                      . ....   +-+...+..+ ...+.++..|.|.|
T Consensus       125 li~~gA~~~a-vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G-~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  125 LIQHGANLLA-VNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAG-AELDARHARGATAL  202 (527)
T ss_pred             HHHhhhhhhh-ccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcc-ccccccccccchHH
Confidence            5555544433 2333333322110                      0 0011   1112222323 45556666799999


Q ss_pred             hHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhh
Q 007515          253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD  327 (600)
Q Consensus       253 h~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~  327 (600)
                      |+|+.+|..++.++|++.   +..++.+|.+|+||||.|+.+|..+++++|+++|++++..+..|.||+|++...
T Consensus       203 HvAaa~Gy~e~~~lLl~a---g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQA---GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHhhhHHHHHHHHHHh---ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            999999999999999998   667899999999999999999999999999999999999999999999997653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=9e-21  Score=216.01  Aligned_cols=174  Identities=21%  Similarity=0.215  Sum_probs=95.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC
Q 007515          112 DNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG  191 (600)
Q Consensus       112 ~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  191 (600)
                      .+.++|+.|+..|+.++++.|++.|.+++..+..|.||||+|+..|+.++++.|++++.+++ .+|.+|+||||+|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-IRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHHhC
Confidence            34455555555555555555555555555555555555555555555555555555555443 44555555666665555


Q ss_pred             cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhc
Q 007515          192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL  271 (600)
Q Consensus       192 ~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  271 (600)
                      +.++++.|++.++...   ...|.+|||.|+..|+.++++.|++.+ .+++.+|.+|+||||+|+..|+.+++++|++. 
T Consensus       603 ~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-  677 (823)
T PLN03192        603 HHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLLIMN-  677 (823)
T ss_pred             CHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc-
Confidence            5555555555444321   233445666666666666666665554 34455555566666666666666666666554 


Q ss_pred             ccccccCCCCCCC-ChHhHHHHh
Q 007515          272 NITKLANMPDNDG-NTILHLATA  293 (600)
Q Consensus       272 ~~~~~~n~~d~~G-~T~Lh~A~~  293 (600)
                        +++++..|.+| .||++++..
T Consensus       678 --GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        678 --GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             --CCCCCCCCCCCCCCHHHHHHH
Confidence              44455555555 666665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=7.9e-21  Score=181.26  Aligned_cols=160  Identities=26%  Similarity=0.348  Sum_probs=140.5

Q ss_pred             ccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc-----CCHHHHHHHHhcccccccc-cccc
Q 007515          174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK-----GRINIIDEILSLNLQSAEM-RTIH  247 (600)
Q Consensus       174 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~-----g~~~~v~~Ll~~~~~~~~~-~~~~  247 (600)
                      +..|.+|+|+|||++.++++++|+.||+.|......+++.|+||+++|+..     .+.++|..|...+.  ++. -...
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAsQ~  339 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKASQH  339 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhhhh
Confidence            467999999999999999999999999999766666899999999998864     56789999998773  333 3458


Q ss_pred             ccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH-hcCCCcccccCCCCCHHHHHhh
Q 007515          248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVES  326 (600)
Q Consensus       248 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~gad~n~~n~~G~T~l~~a~~  326 (600)
                      |+|+|++|+.+|+.++++.|+..   ++++|.+|.+|-|+|++|+++|+.+++++|| ..++|+...|.+|-|+|.+|. 
T Consensus       340 gQTALMLAVSHGr~d~vk~LLac---gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl-  415 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLAC---GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL-  415 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHc---cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH-
Confidence            99999999999999999999887   8899999999999999999999999999999 789999999999999999954 


Q ss_pred             hcCCcchhhHHHHHHH
Q 007515          327 DASNSGALQIVPALEE  342 (600)
Q Consensus       327 ~a~~~~~~~i~~~L~~  342 (600)
                         ..++.+|.-+|-.
T Consensus       416 ---eagh~eIa~mlYa  428 (452)
T KOG0514|consen  416 ---EAGHREIAVMLYA  428 (452)
T ss_pred             ---hcCchHHHHHHHH
Confidence               4567777766643

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=4.3e-20  Score=176.28  Aligned_cols=189  Identities=21%  Similarity=0.327  Sum_probs=143.4

Q ss_pred             CCHHHHHHHHHh----Cch----hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHH
Q 007515           56 GHEELASEILKL----CPE----MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLD  127 (600)
Q Consensus        56 g~~e~v~~Ll~~----~~~----~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e  127 (600)
                      -+.+.|+..|..    .+.    .++..|.+|+|+||||+.++|.++|+.||+.+.-.+...|+.|.||+++|+...-. 
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk-  315 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLK-  315 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhc-
Confidence            346776655543    232    36788999999999999999999999999999877788899999999998754200 


Q ss_pred             HHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCC
Q 007515          128 VAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS  207 (600)
Q Consensus       128 ~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  207 (600)
                                                 ...+.++|..|.+.+. ++.+....|+|+|++|+.+|+.++|+.||..|+|++
T Consensus       316 ---------------------------~~~d~~vV~~LF~mgn-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN  367 (452)
T KOG0514|consen  316 ---------------------------QPADRTVVERLFKMGD-VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN  367 (452)
T ss_pred             ---------------------------chhhHHHHHHHHhccC-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc
Confidence                                       0012244444444332 222445568888888888888888888888888875


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccc
Q 007515          208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT  274 (600)
Q Consensus       208 ~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  274 (600)
                      . +|.+|.|+|++|+..||.|+++.||.....+....|.+|.|+|.+|...|+.+|.-+|..+.+.+
T Consensus       368 i-QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~  433 (452)
T KOG0514|consen  368 I-QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNIK  433 (452)
T ss_pred             c-ccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHHhh
Confidence            5 78888888888888888888888888776677788888888888888888888888887775443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-19  Score=181.96  Aligned_cols=232  Identities=23%  Similarity=0.291  Sum_probs=180.4

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE   89 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~   89 (600)
                      -.-.++.|+..||.+.+..++..+...  ...+.+|.|+||-+|...+.++|++|+++++. ++..|..|+||||.|+.+
T Consensus        40 ~sa~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   40 DSAVFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             chHHHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhccc
Confidence            345688899999999999999988654  56678899999999999999999999999998 899999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC---HHHHHHHH
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH---LDIVKELL  166 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~---~~~v~~Ll  166 (600)
                      |+..++++|+..++++... |.+|..|+.+|...-..++...-.......          +-.+-....   .+=+...+
T Consensus       117 g~~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~----------iea~R~~~e~~ml~D~~q~l  185 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGID----------IEAARKAEEQTMLDDARQWL  185 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhccc----------HHHHhhhhHHHHHHHHHHHH
Confidence            9999999999999998554 888999988776655555444433321100          111100011   11122233


Q ss_pred             hcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc
Q 007515          167 EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI  246 (600)
Q Consensus       167 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  246 (600)
                      ..+.... ..+..|-|.||.|+.+|+.++.++|+++|.++.. +|.+|++|||.|+..|..++++.|++++ ...+..+.
T Consensus       186 ~~G~~~d-~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~-~D~dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~  262 (527)
T KOG0505|consen  186 NAGAELD-ARHARGATALHVAAANGYTEVAALLLQAGYSVNI-KDYDGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTK  262 (527)
T ss_pred             hcccccc-ccccccchHHHHHHhhhHHHHHHHHHHhccCccc-ccccCCCcccHHHHhhhHhHHHHHHHhh-cccchhhh
Confidence            3555554 4455599999999999999999999999998855 8999999999999999999999888877 56777888


Q ss_pred             cccchhhHhHhc
Q 007515          247 HGETVLHLTVKN  258 (600)
Q Consensus       247 ~g~t~Lh~Av~~  258 (600)
                      .|++|+-+|...
T Consensus       263 ~g~~p~dv~dee  274 (527)
T KOG0505|consen  263 MGETPLDVADEE  274 (527)
T ss_pred             cCCCCccchhhh
Confidence            899999988753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=4.4e-19  Score=162.26  Aligned_cols=141  Identities=20%  Similarity=0.249  Sum_probs=110.8

Q ss_pred             cCCCCCChHHHHHHhcCcH----HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHH---HHHHHhcccccccccc-c
Q 007515          175 KKDLNGHTPLHLSCSKGHL----EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI---IDEILSLNLQSAEMRT-I  246 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~---v~~Ll~~~~~~~~~~~-~  246 (600)
                      ..+.++.+++|.||+.|+.    +++++|++.++.+.. .|..|+||||+|+..|+.+.   +++|++.+ ..++.++ .
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d~~   92 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARELG   92 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCCCC
Confidence            3456677788888888887    555667777776543 67788888888888877554   67777766 4566666 4


Q ss_pred             cccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCC
Q 007515          247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT  319 (600)
Q Consensus       247 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T  319 (600)
                      .|+||||+|+..++.+++++|+..  .+.+++.+|..|.||||+|+..++.+++++|+++|++++.++..|..
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~--~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQ--LGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhc--cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            788888888888888888888852  14567888999999999999999999999999999999999887753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=2e-18  Score=148.26  Aligned_cols=142  Identities=27%  Similarity=0.301  Sum_probs=125.9

Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchh
Q 007515          183 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE  262 (600)
Q Consensus       183 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~  262 (600)
                      -+-+|+..+....|+.||+..++..+.+|.+|+||||.|+.+|+.+|++.|+..+ ++.+.+...|+||||-||+-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g-An~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG-ANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc-CCcccccccCccchhhhhcccchh
Confidence            4668889999999999999999888889999999999999999999999999877 677888889999999999999999


Q ss_pred             HHHHHHHhcccccccCCCCCCCChHhHHHHhCCcH-HHHHHHH-hcCCCcccccCCCCCHHHHHhhhc
Q 007515          263 AVKYLMETLNITKLANMPDNDGNTILHLATAGKLT-TMVIYLL-KLGVDVNAINRKGYTALDVVESDA  328 (600)
Q Consensus       263 iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~iv~~Ll-~~gad~n~~n~~G~T~l~~a~~~a  328 (600)
                      ++.+|+++   ++++|...+...||||+|+...+. ..+.+|+ +.++++..+|+.+.||+++|.+..
T Consensus       145 va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999988   778999999999999999987754 4566666 889999999999999999986643

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=2.3e-18  Score=158.30  Aligned_cols=130  Identities=21%  Similarity=0.299  Sum_probs=88.0

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcc-----ccccccccccccchhhHhHhcCc----hhHHHHHHHhcccccccCCC
Q 007515          210 PDNEGRTPLHWAAIKGRINIIDEILSLN-----LQSAEMRTIHGETVLHLTVKNNQ----YEAVKYLMETLNITKLANMP  280 (600)
Q Consensus       210 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~-----~~~~~~~~~~g~t~Lh~Av~~~~----~~iv~~Ll~~~~~~~~~n~~  280 (600)
                      ++..|.||||+|+..|+.++++.|+...     +..++.+|..|+||||+|+..++    .+++++|++.   +.++|.+
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~---gadin~~   93 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL---GADINAQ   93 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc---CCCCCCC
Confidence            4455666666666666666666654321     23455666667777777777666    3666666665   4566777


Q ss_pred             CC-CCChHhHHHHhCCcHHHHHHHHh-cCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          281 DN-DGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       281 d~-~G~T~Lh~A~~~~~~~iv~~Ll~-~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      |. +|+||||+|+..++.+++++|++ .|++++..|.+|.|||++|..    .+..+++++|++.++.
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID----NEDVAMMQILREIVAT  157 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            74 78888888888888888888885 578888888888888887543    3456777777777654

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=4.3e-18  Score=156.45  Aligned_cols=133  Identities=20%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhc------CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhccccccccc
Q 007515          175 KKDLNGHTPLHLSCSKGHLEITRELLKL------DPDLSSLPDNEGRTPLHWAAIKGR----INIIDEILSLNLQSAEMR  244 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~------~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~~~~~~~~~~  244 (600)
                      .+|..|.||||+|+..|+.++++.|+..      ++++. .+|..|.||||+|+..|+    .++++.|++.+ ..++.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-adin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-ADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCC
Confidence            5577888999999999999888887542      34443 367888999999998888    47788888876 455666


Q ss_pred             cc-cccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          245 TI-HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       245 ~~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                      +. .|+||||+|+..++.+++++|+...  +..++..|.+|.||||+|+..++.+++++|++.++...
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQP--GIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            64 7899999999999999999888632  34678888999999999999999999999988765543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.75  E-value=1.7e-17  Score=151.69  Aligned_cols=137  Identities=14%  Similarity=0.155  Sum_probs=97.0

Q ss_pred             CCCChHHHHHHhcCCH----HHHHHHHhcCccccccCCCCCChHHHHHHhcCcHH---HHHHHHhcCCCCCCCCC-CCCC
Q 007515          144 DGLTTSLHVSAMAGHL----DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE---ITRELLKLDPDLSSLPD-NEGR  215 (600)
Q Consensus       144 ~~~~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~d-~~g~  215 (600)
                      ..+.++||.|++.|+.    ++++.|++.+..+. ..|..|+||||+|+..|+.+   ++++|++.|+++.. ++ ..|.
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~-~d~~~g~   95 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA-RELGTGN   95 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC-CCCCCCC
Confidence            3344577777777776    44445555555544 66777888888888877654   36788888887765 45 4788


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCC
Q 007515          216 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGN  285 (600)
Q Consensus       216 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~  285 (600)
                      ||||+|+..|+.+++++|+......++.++..|+||||+|+..++.+++++|++.   +..++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~---ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN---GAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcccCCc
Confidence            8888888888888888888543456677777888888888888888888888776   455666666553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=2.3e-17  Score=162.57  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=93.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhcc----CCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           46 NTILHLTARFGHEELASEILKLCPEMVAAE----NEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        46 ~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~----n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      .++||.|+..|+.+++++|++.|++ ++.+    +..|.||||+|+..|+.+++++|++.|+++....+..|.||||.|+
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            4466666666777777777777766 4444    3467777777777777777777777777665433456777777777


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHh
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      ..|+.+++++|+++|++++..+..|.||||.|+..++.+++..+...      ..+..+.+|++++   ++.++++.|+.
T Consensus       113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~n~ei~~~Lis  183 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL---INFDILKILVS  183 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh---ccHHHHHHHHH
Confidence            77777777777777776666666666666666666665555443311      2234455565543   24556666655


Q ss_pred             cCC
Q 007515          202 LDP  204 (600)
Q Consensus       202 ~~~  204 (600)
                      ++.
T Consensus       184 h~v  186 (300)
T PHA02884        184 HFI  186 (300)
T ss_pred             HHH
Confidence            543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3e-17  Score=161.75  Aligned_cols=155  Identities=16%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             CCCCCCh-HHHHHHhcCcHHHHHHHHhcCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc-cccccc
Q 007515          176 KDLNGHT-PLHLSCSKGHLEITRELLKLDPDLSSL---PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGET  250 (600)
Q Consensus       176 ~d~~g~t-pLh~A~~~g~~~iv~~Ll~~~~~~~~~---~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t  250 (600)
                      +|..|+| +||.|+..|+.+++++|+++|+++...   .+..|.||||+|+..|+.++++.|++.+ ++++.. +..|.|
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~~g~T  106 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEEAKIT  106 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCCCCCC
Confidence            3444443 344444455666666666666665432   1345666666666666666666666655 334433 345666


Q ss_pred             hhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCC
Q 007515          251 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN  330 (600)
Q Consensus       251 ~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~  330 (600)
                      |||+|+..++.+++++|+..   +++++.+|.+|.||||+|+..++.+++..+.  |+.   .+..+.+|+.++      
T Consensus       107 pLh~Aa~~~~~eivklLL~~---GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~------  172 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSY---GADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL------  172 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh------
Confidence            66666666666666666655   4556666666666666666666655554443  222   344455565542      


Q ss_pred             cchhhHHHHHHHhccc
Q 007515          331 SGALQIVPALEEAGAR  346 (600)
Q Consensus       331 ~~~~~i~~~L~~~ga~  346 (600)
                       ...+++++|+.++..
T Consensus       173 -~n~ei~~~Lish~vl  187 (300)
T PHA02884        173 -INFDILKILVSHFIL  187 (300)
T ss_pred             -ccHHHHHHHHHHHHH
Confidence             235566666666663

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=5.4e-18  Score=153.54  Aligned_cols=96  Identities=24%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             ccccccchhhHhHhcCchh---HHHHHHHhcccccccCCCC-CCCChHhHHHHhCCcHHHHHHHHh-cCCCcccccCCCC
Q 007515          244 RTIHGETVLHLTVKNNQYE---AVKYLMETLNITKLANMPD-NDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGY  318 (600)
Q Consensus       244 ~~~~g~t~Lh~Av~~~~~~---iv~~Ll~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~-~gad~n~~n~~G~  318 (600)
                      +|..|+||||+|+..++.+   ++++|++.   +.++|.+| .+|+||||+|+..++.+++++|++ .|++++.+|..|.
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~---gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~  127 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW---GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFK  127 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc---CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCC
Confidence            3455566666666555542   34455544   34455555 356666666666666666666664 3666666666666


Q ss_pred             CHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          319 TALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       319 T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      |||++|.    ..++.+++++|+..|++
T Consensus       128 tpL~~A~----~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        128 TPYYVAC----ERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CHHHHHH----HcCCHHHHHHHHHcCCC
Confidence            6666643    23445566666666554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=1.5e-17  Score=150.58  Aligned_cols=133  Identities=19%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             ccCCCCCChHHHHHHhcCcHHHHHHHHhcCC--C----CCCCCCCCCCCHHHHHHHcCCHH---HHHHHHhccccccccc
Q 007515          174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDP--D----LSSLPDNEGRTPLHWAAIKGRIN---IIDEILSLNLQSAEMR  244 (600)
Q Consensus       174 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~--~----~~~~~d~~g~tpL~~Aa~~g~~~---~v~~Ll~~~~~~~~~~  244 (600)
                      ...|.+|.||||+||..|+.  +..+...+.  +    .....|.+|.||||+|+..|+.+   +++.|++.+ ..++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adin~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADINGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCcccc
Confidence            46788999999999999984  333332221  1    11235889999999999999874   678888887 466777


Q ss_pred             c-ccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          245 T-IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       245 ~-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                      + ..|+||||+|+..++.+++++|+...  +.++|.+|..|.||||+|+..++.+++++|+++|++.+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~--g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQP--GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCC--CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7 58999999999999999999998632  45688999999999999999999999999999999875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=5.4e-18  Score=156.91  Aligned_cols=132  Identities=28%  Similarity=0.410  Sum_probs=109.2

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCCh
Q 007515          207 SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT  286 (600)
Q Consensus       207 ~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T  286 (600)
                      .++-|..|.+|||+||+.|+..+++.|+..+ .-++..+....||||+|+.+|+.++++.|++.   ++++|..++.|||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rg-arvn~tnmgddtplhlaaahghrdivqkll~~---kadvnavnehgnt  102 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR---KADVNAVNEHGNT  102 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcc-cccccccCCCCcchhhhhhcccHHHHHHHHHH---hcccchhhccCCC
Confidence            3446778888999999999988888888877 56667777778999999999999999999887   7789999999999


Q ss_pred             HhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          287 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       287 ~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      |||+||-.|...+++-|+..|+.++..|++|.||+|.|.    ..-...+.+.-.++|..
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak----p~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK----PMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc----hHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999842    22222344555556643

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=9.4e-16  Score=161.90  Aligned_cols=213  Identities=24%  Similarity=0.276  Sum_probs=158.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCC---------cccccccCCCChHHHHHHh---cCCHHHHHHHHhcCcccccc----
Q 007515          112 DNESVLYVACERGRLDVAKQLLNYS---------SLLILEVDGLTTSLHVSAM---AGHLDIVKELLEARQEFAWK----  175 (600)
Q Consensus       112 ~g~tpL~~A~~~g~~e~v~~Ll~~~---------~~~~~~~~~~~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~----  175 (600)
                      ..+.++..|...+..+..+.+.+.+         .+.+....-|.|.||.|..   .++.++++.|++..|.+.+.    
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            3346777888888888777777655         3344445667889999987   34568899999988876543    


Q ss_pred             CCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHh
Q 007515          176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  255 (600)
Q Consensus       176 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  255 (600)
                      ....|.||||+|+.+.+.++|++|++.|+|+....-..-..|=..  +.++         .. .+-.-.-..|+.||.+|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq--k~~r---------k~-T~Y~G~~YfGEyPLSfA  247 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ--KASR---------KS-TNYTGYFYFGEYPLSFA  247 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc--cccc---------cc-cCCcceeeeccCchHHH
Confidence            344699999999999999999999999999864211110000000  0000         00 00111124689999999


Q ss_pred             HhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC--cccccCCCCCHHHHHhhhcCCcch
Q 007515          256 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD--VNAINRKGYTALDVVESDASNSGA  333 (600)
Q Consensus       256 v~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad--~n~~n~~G~T~l~~a~~~a~~~~~  333 (600)
                      +.-++.+++++|++.   ++++|.+|.+|||.||.-+..-..++.+++++.|++  ...+|++|.|||-+|+.    .+.
T Consensus       248 AC~nq~eivrlLl~~---gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak----lGk  320 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAH---GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK----LGK  320 (782)
T ss_pred             HHcCCHHHHHHHHhc---CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH----hhh
Confidence            999999999999996   888999999999999999999999999999999999  99999999999999654    456


Q ss_pred             hhHHHHHHHh
Q 007515          334 LQIVPALEEA  343 (600)
Q Consensus       334 ~~i~~~L~~~  343 (600)
                      .+|.+.+++.
T Consensus       321 ~emf~~ile~  330 (782)
T KOG3676|consen  321 KEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHh
Confidence            6777766665

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=1.4e-16  Score=136.94  Aligned_cols=142  Identities=23%  Similarity=0.239  Sum_probs=101.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHH
Q 007515           48 ILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLD  127 (600)
Q Consensus        48 ~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e  127 (600)
                      .+-.|+..+....|+.||+..+..++.+|.+|.||||-|+.+|+.+||+.|+..+++.. .+...|.||||-||..++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccchhhhhcccchh
Confidence            46677888888888888888888888888888888888888888888888887777764 34677888888888888888


Q ss_pred             HHHHHHhCCcccccccCCCChHHHHHHhcCCH-HHHHHHHhcCccccccCCCCCChHHHHHHhc
Q 007515          128 VAKQLLNYSSLLILEVDGLTTSLHVSAMAGHL-DIVKELLEARQEFAWKKDLNGHTPLHLSCSK  190 (600)
Q Consensus       128 ~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  190 (600)
                      ++..|+++|++++....+..||||+|+...+. ..+.+|+....--...++..+.||+.+|-+.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            88888888888877777777777777765553 3444444433333334455566666666544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=7e-16  Score=162.86  Aligned_cols=212  Identities=23%  Similarity=0.227  Sum_probs=135.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhch--------hhhhccCCCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhc----cC
Q 007515           12 RHLFETILRGDTQAFLSLIQQDE--------AKIKQTVPGSLNTILHLTARF---GHEELASEILKLCPEMVAA----EN   76 (600)
Q Consensus        12 ~~L~~A~~~gd~~~~~~ll~~~~--------~~l~~~~~~~g~T~Lh~Aa~~---g~~e~v~~Ll~~~~~~l~~----~n   76 (600)
                      +.++.+..+++.+....++....        ..+ ......|+|+||.|..+   ++.++++.|++..|.+++.    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            66777777777777766655432        111 12244578888888763   4567788888877765443    34


Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhc
Q 007515           77 EKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA  156 (600)
Q Consensus        77 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~  156 (600)
                      ..|.||||.|+.+.+.++|++|++.|+++....-..-..|=.    .+   ..+    +..+..-.-.-|..||..|+..
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~d----qk---~~r----k~T~Y~G~~YfGEyPLSfAAC~  250 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDD----QK---ASR----KSTNYTGYFYFGEYPLSFAACT  250 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccc----cc---ccc----cccCCcceeeeccCchHHHHHc
Confidence            567888888888888888888888877764221000000000    00   000    0000000112245677777777


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 007515          157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD-LSSLPDNEGRTPLHWAAIKGRINIIDEILS  235 (600)
Q Consensus       157 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~  235 (600)
                      ++.|++++|++++++++ .+|.+|+|.||..+..-..++.+.++++|++ ...+++..|.|||.+||+.|+.++++++++
T Consensus       251 nq~eivrlLl~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  251 NQPEIVRLLLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             CCHHHHHHHHhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            77777777777777776 7788888888888777777888888888777 223467788888888888888888888887


Q ss_pred             c
Q 007515          236 L  236 (600)
Q Consensus       236 ~  236 (600)
                      .
T Consensus       330 ~  330 (782)
T KOG3676|consen  330 R  330 (782)
T ss_pred             h
Confidence            6

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=3.2e-15  Score=121.72  Aligned_cols=89  Identities=37%  Similarity=0.505  Sum_probs=71.1

Q ss_pred             HHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcH
Q 007515          218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT  297 (600)
Q Consensus       218 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  297 (600)
                      ||+|++.|+.++++.|++.+. ..+.    |+||||+|+.+|+.+++++|++.   +..++.+|.+|+||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~-~~~~----~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA-DINL----GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS-TTTS----SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcC-CCCC----CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCCH
Confidence            678888888888888888553 2222    77888888888888888888876   556888899999999999999999


Q ss_pred             HHHHHHHhcCCCccccc
Q 007515          298 TMVIYLLKLGVDVNAIN  314 (600)
Q Consensus       298 ~iv~~Ll~~gad~n~~n  314 (600)
                      +++++|+++|++++.+|
T Consensus        73 ~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHHcCCCCCCcC
Confidence            99999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.60  E-value=6.1e-16  Score=143.42  Aligned_cols=132  Identities=28%  Similarity=0.381  Sum_probs=89.9

Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHh
Q 007515           88 REGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE  167 (600)
Q Consensus        88 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~  167 (600)
                      +.||.--|++.++.....++.-|..|.+|||+|+..|+..+++.|+..|+.++..+-+..||||+|+..||.++|+.|++
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~   88 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS   88 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH
Confidence            44444344444443333334445666666666666666666666666666666666666677777777777777777777


Q ss_pred             cCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 007515          168 ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA  221 (600)
Q Consensus       168 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  221 (600)
                      ...+++ ..++.|.||||+||..|+..+.+-|+..|+.+.. .++.|.|||..|
T Consensus        89 ~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~i-cnk~g~tpldka  140 (448)
T KOG0195|consen   89 RKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI-CNKKGMTPLDKA  140 (448)
T ss_pred             Hhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeee-cccCCCCchhhh
Confidence            777766 6677788888888888888888888888877643 677788888765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.56  E-value=6e-14  Score=121.57  Aligned_cols=123  Identities=40%  Similarity=0.625  Sum_probs=84.9

Q ss_pred             CCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHh
Q 007515          176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  255 (600)
Q Consensus       176 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  255 (600)
                      .|.+|.||||.|+..++.++++.|++.+.+... .+..|.+|+|.|+..++.++++.|++.++ ..+..+..|.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHH
Confidence            355677788888877777788887777776533 66677777777777777777777777663 3444556666777777


Q ss_pred             HhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHH
Q 007515          256 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  303 (600)
Q Consensus       256 v~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  303 (600)
                      +..++.+++++|++.   +...+..|..|.||+|+|...++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKH---GADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            777777777777665   234555666677777777777666666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.55  E-value=2.6e-14  Score=116.33  Aligned_cols=86  Identities=27%  Similarity=0.401  Sum_probs=59.2

Q ss_pred             HHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHH
Q 007515           49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDV  128 (600)
Q Consensus        49 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~  128 (600)
                      ||+||+.|+.+++++|++.+.+ ++.    |+||||+|+..|+.+++++|++.++++. ..+..|.||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHcCCHHH
Confidence            6777777777777777776654 222    6777777777777777777777776663 335677777777777777777


Q ss_pred             HHHHHhCCcccc
Q 007515          129 AKQLLNYSSLLI  140 (600)
Q Consensus       129 v~~Ll~~~~~~~  140 (600)
                      +++|++++.+++
T Consensus        75 ~~~Ll~~g~~~~   86 (89)
T PF12796_consen   75 VKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHTTT-TT
T ss_pred             HHHHHHcCCCCC
Confidence            777777766654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.54  E-value=1.1e-13  Score=119.87  Aligned_cols=91  Identities=35%  Similarity=0.477  Sum_probs=38.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER  123 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  123 (600)
                      .|.||||+|+..|+.+++++|++.+.. ....+..|.||||.|+..++.+++++|++.++.+ ...+..+.||+|.|+..
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHc
Confidence            344444444444444444444444433 2334444444444444444444444444444322 11233334444444444


Q ss_pred             CCHHHHHHHHhCC
Q 007515          124 GRLDVAKQLLNYS  136 (600)
Q Consensus       124 g~~e~v~~Ll~~~  136 (600)
                      ++.+++++|++++
T Consensus        84 ~~~~~~~~L~~~~   96 (126)
T cd00204          84 GNLDVVKLLLKHG   96 (126)
T ss_pred             CcHHHHHHHHHcC
Confidence            4444444444433

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.39  E-value=2e-12  Score=99.60  Aligned_cols=103  Identities=19%  Similarity=0.235  Sum_probs=91.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCc
Q 007515          217 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL  296 (600)
Q Consensus       217 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  296 (600)
                      -+.|++++|..+-|+.....+ .+++.. ..|++|||+|+-+|+.+++++|+..   ++.++.+|+.|-|||.-|+..|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~~-~ggR~plhyAAD~GQl~ilefli~i---GA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNEI-YGGRTPLHYAADYGQLSILEFLISI---GANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHHH-hCCcccchHhhhcchHHHHHHHHHh---ccccCCccccCCcHHHHHHHHhh
Confidence            467899999999999998877 333322 3799999999999999999999987   77899999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          297 TTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       297 ~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      .++|++|+++|||......+|.+.++..
T Consensus        80 ~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999999999998864

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=1.5e-11  Score=118.47  Aligned_cols=129  Identities=33%  Similarity=0.472  Sum_probs=95.0

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHhccc--ccccccccc
Q 007515          175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR-----INIIDEILSLNL--QSAEMRTIH  247 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~~~~  247 (600)
                      ..+..+.+++|.++..+..++++.++..+.++ ...+.+|.||||+|+..|+     .++++.|++.+.  ......|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            44555777777777777777777777777777 4477777888888887777     777777777776  466666777


Q ss_pred             ccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC
Q 007515          248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  307 (600)
Q Consensus       248 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  307 (600)
                      |.||||+|+..|+.+++++|++.   +..++..+..|.|++|.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA---GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc---CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            77777777777777777777766   4456666777777777777777777777777654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.38  E-value=1.8e-12  Score=99.88  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=83.2

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcC
Q 007515           11 ERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG   90 (600)
Q Consensus        11 ~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g   90 (600)
                      +..+.+++++|+.+.++..+.++.+. +...  .|.+|||+||-+|+.+++++|+..+++ ++.+|+.|-|||.-|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nV-n~~~--ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNV-NEIY--GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccH-HHHh--CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHh
Confidence            45677889999999999998877443 2322  688999999999999999999999988 8889999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCcHHH
Q 007515           91 RLNFVKLFVGIDPSVIYKLNRDNESVLY  118 (600)
Q Consensus        91 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  118 (600)
                      |.++|++|++.|++-. ....+|.+.+.
T Consensus        79 H~~cVklLL~~GAdrt-~~~PdG~~~~e  105 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRT-IHAPDGTALIE  105 (117)
T ss_pred             hHHHHHHHHHcCcccc-eeCCCchhHHh
Confidence            9999999999888763 23556655543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.36  E-value=2.4e-11  Score=117.02  Aligned_cols=78  Identities=33%  Similarity=0.480  Sum_probs=46.0

Q ss_pred             HHHHHHHHhcCc--cccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007515          159 LDIVKELLEARQ--EFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL  236 (600)
Q Consensus       159 ~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  236 (600)
                      .++++.|++.+.  +.....|..|+||||+|+..|+.++++.|++.++++.. .+..|.|+++.|+..++.++++.+++.
T Consensus       124 ~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc-cccCCCcchhhhcccchHHHHHHHHhc
Confidence            455555555544  34445566666666666666666666666666666544 455666666666666666666666654


Q ss_pred             c
Q 007515          237 N  237 (600)
Q Consensus       237 ~  237 (600)
                      .
T Consensus       203 ~  203 (235)
T COG0666         203 G  203 (235)
T ss_pred             C
Confidence            3

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=2e-11  Score=113.75  Aligned_cols=124  Identities=21%  Similarity=0.228  Sum_probs=109.9

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHH
Q 007515            9 YMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR   88 (600)
Q Consensus         9 ~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~   88 (600)
                      .-.++|++++-+||.+.+..++..-...  +..|.+|.|+|..|+..|+.++|+.|++.+.++...++..+.||||+||.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v--n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV--NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh--hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            3467899999999999999999864332  45688999999999999999999999999999878888999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 007515           89 EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY  135 (600)
Q Consensus        89 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~  135 (600)
                      +|+.++.++|++.|+.. ...|.-|+|+-.+|+.-|+.++|..+-++
T Consensus        89 SGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999876 45588999999999999999999887554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.29  E-value=2.1e-12  Score=94.43  Aligned_cols=50  Identities=36%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             cccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          275 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       275 ~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      .++|.+|..|+||||+|+..|+.+++++|++.|+|++.+|.+|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57899999999999999999999999999999999999999999999985

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=1e-11  Score=90.29  Aligned_cols=54  Identities=33%  Similarity=0.527  Sum_probs=39.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV   99 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll   99 (600)
                      |.|+||.||+.|+.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            57888888888888888888888766 6777888888888888888888888775

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.8e-11  Score=122.62  Aligned_cols=119  Identities=21%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCH
Q 007515           13 HLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRL   92 (600)
Q Consensus        13 ~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~   92 (600)
                      -|.+|+.+|.+|.|+..+.+-.+.  ...+..|-|+||-|+-.||.+||++|++.+.+ ++..|.+|+||||+||.++++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp--SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP--SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC--CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCch
Confidence            467888888888888887654432  23455688888888888888888888888887 788888888888888888888


Q ss_pred             HHHHHHHhCCcccccccCCCCCcHHHHH--HHhCCHHHHHHHHh
Q 007515           93 NFVKLFVGIDPSVIYKLNRDNESVLYVA--CERGRLDVAKQLLN  134 (600)
Q Consensus        93 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~e~v~~Ll~  134 (600)
                      .+++.|++.|+.+....-.+++|+..-+  .+.|..++.+||..
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            8888888888877666666777776544  23466666666653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=2.5e-11  Score=121.72  Aligned_cols=118  Identities=29%  Similarity=0.293  Sum_probs=102.4

Q ss_pred             HHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcH
Q 007515          218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT  297 (600)
Q Consensus       218 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  297 (600)
                      |.-|+..|.+|+|+.++..- .+....+..|-|+||-|+..|+.+||+||++.   +.++|..|.+|+||||+|+.+++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev-~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~---ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEV-TDPSQPNDEGITALHNAICAGHYEIVKFLIEF---GANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhh-cCCCCCCccchhHHhhhhhcchhHHHHHHHhc---CCcccCccCCCCchhhhhhhcCch
Confidence            45689999999999998765 56777888999999999999999999999987   788999999999999999999999


Q ss_pred             HHHHHHHhcCCCccccc-CCCCCHHHHHhhhcCCcchhhHHHHHH
Q 007515          298 TMVIYLLKLGVDVNAIN-RKGYTALDVVESDASNSGALQIVPALE  341 (600)
Q Consensus       298 ~iv~~Ll~~gad~n~~n-~~G~T~l~~a~~~a~~~~~~~i~~~L~  341 (600)
                      .+++.|++.|+-+-+.. .++.||.+-++.  ...|..++.++|-
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee--~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEE--MEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcch--hhhhHHHHHHHHH
Confidence            99999999999988765 688999886543  3456677888874

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.15  E-value=1.1e-10  Score=129.57  Aligned_cols=86  Identities=28%  Similarity=0.385  Sum_probs=43.9

Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchh
Q 007515          183 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE  262 (600)
Q Consensus       183 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~  262 (600)
                      .|+.|+..|+.+.++.|++.|++++. .|.+|.||||+|+..|+.++++.|++.+ .+++.+|..|.||||+|+.+++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~-~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHH
Confidence            45555555555555555555555433 4555555555555555555555555544 233444444444444444444444


Q ss_pred             HHHHHHHh
Q 007515          263 AVKYLMET  270 (600)
Q Consensus       263 iv~~Ll~~  270 (600)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            44444443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.14  E-value=1.1e-10  Score=84.80  Aligned_cols=54  Identities=35%  Similarity=0.521  Sum_probs=43.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 007515           79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL  133 (600)
Q Consensus        79 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll  133 (600)
                      |.||||+||+.|+.+++++|++.+.++... |.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~-d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQ-DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999998887555 899999999999999999999885

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.13  E-value=3.3e-10  Score=105.74  Aligned_cols=119  Identities=24%  Similarity=0.247  Sum_probs=69.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcH
Q 007515          114 ESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL  193 (600)
Q Consensus       114 ~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  193 (600)
                      .+||.-++..|+.+-+..|+..-..++..++.|.++|..|+..|+.++++.|++.+.+++...+..+.||||+|+-.|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            34555555555555555555554444555555555555555556666666666666665555555566666666666666


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 007515          194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI  233 (600)
Q Consensus       194 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~L  233 (600)
                      ++.+.|++.|+.... .+.-|+|+-.+||.-|+.++|..+
T Consensus        93 dvcrllldaGa~~~~-vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYL-VNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             hHHHHHHhccCcccc-ccchhhhHHHHHHHhcchHHHHHH
Confidence            666666666655433 455566666666666666665544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.08  E-value=7.9e-11  Score=86.06  Aligned_cols=55  Identities=29%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             HhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHH
Q 007515          234 LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA  291 (600)
Q Consensus       234 l~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  291 (600)
                      ++.++..++..|..|+||||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~---g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN---GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC---T--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC---cCCCCCCcCCCCCHHHhC
Confidence            3444455556666666666666666666666666643   455666666666666665

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.05  E-value=6.9e-10  Score=123.37  Aligned_cols=106  Identities=25%  Similarity=0.410  Sum_probs=91.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 007515          148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI  227 (600)
Q Consensus       148 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  227 (600)
                      ..|+.|+..|+.+.++.|++.+.+++ ..|.+|+||||+||..|+.+++++|++.|++++. .|.+|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcH
Confidence            46899999999999999999998886 7799999999999999999999999999999865 899999999999999999


Q ss_pred             HHHHHHHhccc------cccccccccccchhhHh
Q 007515          228 NIIDEILSLNL------QSAEMRTIHGETVLHLT  255 (600)
Q Consensus       228 ~~v~~Ll~~~~------~~~~~~~~~g~t~Lh~A  255 (600)
                      ++++.|++++.      ......+..|.+++..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999998721      33444555666665543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.95  E-value=3.1e-09  Score=107.53  Aligned_cols=127  Identities=22%  Similarity=0.281  Sum_probs=111.7

Q ss_pred             CccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCc-hhhhccCCCCCcHhHH
Q 007515            7 NPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP-EMVAAENEKMETPLHE   85 (600)
Q Consensus         7 ~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~-~~l~~~n~~g~TpLh~   85 (600)
                      -|...+.+.+|+..+|+-.+++....+.+.+.+  +.+..|.||+|+..|+-|+|++||+++| +++.+.++.|+|+||-
T Consensus       863 appiseeil~av~~~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhk  940 (1004)
T KOG0782|consen  863 APPISEEILRAVLSSDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHK  940 (1004)
T ss_pred             CCCccHHHHHHHHhccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHH
Confidence            345677899999999999999888887776433  4556899999999999999999999987 4788899999999999


Q ss_pred             HHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 007515           86 ACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS  136 (600)
Q Consensus        86 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~  136 (600)
                      |+..++..++++|++.|+.+ .+.|..|.||-.-|-..|+.|++.||-...
T Consensus       941 aa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  941 AACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999999998 556999999999999999999999987653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=1.7e-08  Score=62.86  Aligned_cols=30  Identities=53%  Similarity=0.735  Sum_probs=28.2

Q ss_pred             CCChHhHHHHhCCcHHHHHHHHhcCCCccc
Q 007515          283 DGNTILHLATAGKLTTMVIYLLKLGVDVNA  312 (600)
Q Consensus       283 ~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~  312 (600)
                      +|+||||+|++.|+.+++++|+++|+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=2.5e-08  Score=63.99  Aligned_cols=33  Identities=45%  Similarity=0.584  Sum_probs=31.3

Q ss_pred             CCChHhHHHHhCCcHHHHHHHHhcCCCcccccC
Q 007515          283 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  315 (600)
Q Consensus       283 ~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~  315 (600)
                      +|+||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            699999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.65  E-value=2.4e-08  Score=105.65  Aligned_cols=92  Identities=21%  Similarity=0.243  Sum_probs=81.9

Q ss_pred             HHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCC-CCChHhHHHHhCCcHHHHHHHHhcCCCc
Q 007515          232 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDV  310 (600)
Q Consensus       232 ~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~gad~  310 (600)
                      .+-+.|....++.|..|+|+||+|+..+..+++++|+++   +.+++.+|. .|+||||-|...|+.+++-+||.+|+.+
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh---Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH---GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc---CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            344456667788999999999999999999999999998   667888885 6999999999999999999999999999


Q ss_pred             ccccCCCCCHHHHHhh
Q 007515          311 NAINRKGYTALDVVES  326 (600)
Q Consensus       311 n~~n~~G~T~l~~a~~  326 (600)
                      .++|++|..||+...+
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            9999999999998865

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.43  E-value=5.4e-07  Score=90.43  Aligned_cols=84  Identities=27%  Similarity=0.333  Sum_probs=64.0

Q ss_pred             hhHhHhcCchhHHHHHHHhcccccccCCCCC-CCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCC
Q 007515          252 LHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN  330 (600)
Q Consensus       252 Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~  330 (600)
                      ||..++.++.+..--|+..   +++.|..+. .|+||||.|++.|+..-+++|+-+|||+++.|.+|.||+++|..    
T Consensus       137 LhasvRt~nlet~LRll~l---GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~----  209 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL---GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ----  209 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc---ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh----
Confidence            6777777777765555544   666777664 68999999999999999999999999999999999999999544    


Q ss_pred             cchhhHHHHHHH
Q 007515          331 SGALQIVPALEE  342 (600)
Q Consensus       331 ~~~~~i~~~L~~  342 (600)
                      .++-++.+.|.+
T Consensus       210 ~gH~~laeRl~e  221 (669)
T KOG0818|consen  210 GGHHELAERLVE  221 (669)
T ss_pred             cCchHHHHHHHH
Confidence            445455544443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.42  E-value=2.8e-07  Score=97.76  Aligned_cols=105  Identities=13%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             HHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHH
Q 007515           17 TILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVK   96 (600)
Q Consensus        17 A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~   96 (600)
                      +..++...-++.+++..-..+....|..|.|+||+|+..|..++++||+++|.++.-..-+.|.||||-|+.+|+++++-
T Consensus        24 ~~tKs~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~  103 (1267)
T KOG0783|consen   24 SKTKSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCAS  103 (1267)
T ss_pred             hhhcCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHH
Confidence            33444444567777666555556678889999999999999999999999999865555677999999999999999999


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHHH
Q 007515           97 LFVGIDPSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        97 ~Ll~~~~~~~~~~~~~g~tpL~~A~~  122 (600)
                      +|+.+|..+ ...|++|.+||..-++
T Consensus       104 lLL~~g~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  104 LLLSKGRSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHhcCCce-EEecccCCCHHHHHhh
Confidence            999999887 5669999999998776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.42  E-value=7.9e-07  Score=90.47  Aligned_cols=118  Identities=17%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             HHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcc-cccccCCCCCcHHHHHHHhCCHH
Q 007515           49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPS-VIYKLNRDNESVLYVACERGRLD  127 (600)
Q Consensus        49 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~e  127 (600)
                      +..|+..+..--+...-..+.+ +-.++.+..+.||+|+..|+-++|+++++++|. +....+..|+|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            3344555555445555555666 566777778888888888888888888888764 44555677777777777777777


Q ss_pred             HHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHh
Q 007515          128 VAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE  167 (600)
Q Consensus       128 ~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~  167 (600)
                      +..+|++.|+.+...+..|.||-..|-..|+.++..+|-.
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            7777777777666666666666666666666666666543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.33  E-value=4.5e-07  Score=90.61  Aligned_cols=92  Identities=28%  Similarity=0.266  Sum_probs=81.2

Q ss_pred             ccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH-hcCCCcccccCCCCCHHHHH
Q 007515          246 IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       246 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~gad~n~~n~~G~T~l~~a  324 (600)
                      .++...+++|++.|....++-+.-.   +.+++.+|.+.+|+||.|+..|+.+++++|+ ..++|++.+|+-|+||||- 
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~---g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd-  579 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ---GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD-  579 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh---cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH-
Confidence            3456789999999999988866554   6689999999999999999999999999999 6799999999999999997 


Q ss_pred             hhhcCCcchhhHHHHHHHhc
Q 007515          325 ESDASNSGALQIVPALEEAG  344 (600)
Q Consensus       325 ~~~a~~~~~~~i~~~L~~~g  344 (600)
                         |...++.+++++|.++-
T Consensus       580 ---A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 ---AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ---hHhcCcHHHHHHHHHHh
Confidence               66788999999998864

>PF13606 Ank_3: Ankyrin repeat

Probab=98.32  E-value=7.2e-07  Score=55.48  Aligned_cols=29  Identities=48%  Similarity=0.846  Sum_probs=22.7

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhcCCCCC
Q 007515          179 NGHTPLHLSCSKGHLEITRELLKLDPDLS  207 (600)
Q Consensus       179 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  207 (600)
                      +|+||||+||+.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47788888888888888888888877753

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.30  E-value=1e-06  Score=94.92  Aligned_cols=130  Identities=15%  Similarity=0.059  Sum_probs=102.9

Q ss_pred             cccCccccHHHHHHHHcCCHHHHHHHHhhchh--hhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCc
Q 007515            4 EAINPYMERHLFETILRGDTQAFLSLIQQDEA--KIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMET   81 (600)
Q Consensus         4 ~~~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~--~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~T   81 (600)
                      +............|+..||...+++.+++...  ...+..|.-|.++||+|+.+.|.|++++|++..-..        ..
T Consensus        19 ~~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gd   90 (822)
T KOG3609|consen   19 DADLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GD   90 (822)
T ss_pred             ccccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------ch
Confidence            34455667788899999999999999987755  344667778999999999999999999999876441        34


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCccc---------ccccCCCCCcHHHHHHHhCCHHHHHHHHhCCccccc
Q 007515           82 PLHEACREGRLNFVKLFVGIDPSV---------IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL  141 (600)
Q Consensus        82 pLh~Aa~~g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~  141 (600)
                      +|.+|++.|.+++|+.++.+...-         ....-..+.|||.+||..++.|+++.|+.++..+..
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            899999999999999999654321         111223567999999999999999999999887653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.25  E-value=1.2e-06  Score=87.78  Aligned_cols=96  Identities=21%  Similarity=0.225  Sum_probs=76.2

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhH
Q 007515          210 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  289 (600)
Q Consensus       210 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  289 (600)
                      ++.++..++++|++.|++..++.+.-.+ .+.+..|.+.+|+||+|+..|+.+++++|++..+  .+.+.+|..|+|||.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k--v~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQG-MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACK--VDPDPKDRWGRTPLD  578 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhc-ccccccccccchhheeecccCceeHHHHHHHHHc--CCCChhhccCCCcch
Confidence            3456677888888888888888877666 5677788888888888888888888888887653  357778888888888


Q ss_pred             HHHhCCcHHHHHHHHhcCC
Q 007515          290 LATAGKLTTMVIYLLKLGV  308 (600)
Q Consensus       290 ~A~~~~~~~iv~~Ll~~ga  308 (600)
                      -|...++.+++++|-+.-.
T Consensus       579 dA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhHhcCcHHHHHHHHHHhc
Confidence            8888888888888876643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.22  E-value=5.2e-06  Score=83.57  Aligned_cols=87  Identities=24%  Similarity=0.425  Sum_probs=80.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 007515          149 SLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       149 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~  228 (600)
                      -||..++.|+.+..-.|+..|++.+..-...|.||||.|++.|+..-+++|.-+|+|+.. .|.+|+||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-QDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC-CCCCCCcHHHHHHhcCchH
Confidence            589999999999999999999999877778899999999999999999999999999977 8999999999999999999


Q ss_pred             HHHHHHhc
Q 007515          229 IIDEILSL  236 (600)
Q Consensus       229 ~v~~Ll~~  236 (600)
                      +.+.|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            98888864

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=2.5e-06  Score=86.97  Aligned_cols=86  Identities=26%  Similarity=0.375  Sum_probs=54.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHh-ccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhC
Q 007515          216 TPLHWAAIKGRINIIDEILS-LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG  294 (600)
Q Consensus       216 tpL~~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~  294 (600)
                      .|+|.++...+.+-+...+. .-...++.+|..|+||||+|+.-|+.+.++.|+..   ++++..+|++|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a---~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA---GADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc---CCCccccccccccHHHHHHHc
Confidence            34777766665554444332 22334566666777777777777777777777665   555666777777777777777


Q ss_pred             CcHHHHHHHH
Q 007515          295 KLTTMVIYLL  304 (600)
Q Consensus       295 ~~~~iv~~Ll  304 (600)
                      |+.+++..++
T Consensus        99 g~~q~i~~vl  108 (560)
T KOG0522|consen   99 GNEQIITEVL  108 (560)
T ss_pred             CCHHHHHHHH
Confidence            7776666555

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=2.6e-06  Score=86.84  Aligned_cols=88  Identities=23%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCH
Q 007515           13 HLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRL   92 (600)
Q Consensus        13 ~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~   92 (600)
                      .++.++...+++.....+...........|..|+||||+|+.-||.+.++.|+..+++ +..+|..|.+|||.|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCCH
Confidence            3566666666666666555443333344555667777777777777777777776666 666677777777777777776


Q ss_pred             HHHHHHHhC
Q 007515           93 NFVKLFVGI  101 (600)
Q Consensus        93 ~iv~~Ll~~  101 (600)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            666666543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=1.3e-05  Score=82.24  Aligned_cols=93  Identities=25%  Similarity=0.287  Sum_probs=77.1

Q ss_pred             hhHhHhcCchhHHHHHHHhcccccccC-CCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCC
Q 007515          252 LHLTVKNNQYEAVKYLMETLNITKLAN-MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN  330 (600)
Q Consensus       252 Lh~Av~~~~~~iv~~Ll~~~~~~~~~n-~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~  330 (600)
                      |.-|+.......+-+|+.++......+ .-+.+|.|+||+|+..|+..+.++|+=+|+|+.++|..|+|||.+|    ..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~ya----r~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYA----RQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhH----hh
Confidence            456777777778888888866555433 3466789999999999999999999999999999999999999994    45


Q ss_pred             cchhhHHHHHHHhccccc
Q 007515          331 SGALQIVPALEEAGARRC  348 (600)
Q Consensus       331 ~~~~~i~~~L~~~ga~~~  348 (600)
                      .+..++++.|+.+|....
T Consensus       704 a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cccHHHHHHHHHcCCCcc
Confidence            677889999999997654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.09  E-value=4.9e-06  Score=53.25  Aligned_cols=26  Identities=35%  Similarity=0.446  Sum_probs=13.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCch
Q 007515           45 LNTILHLTARFGHEELASEILKLCPE   70 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~   70 (600)
                      |.||||+|+..|+.+++++|++.+.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555554444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.07  E-value=1e-05  Score=83.04  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCch---hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           48 ILHLTARFGHEELASEILKLCPE---MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        48 ~Lh~Aa~~g~~e~v~~Ll~~~~~---~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      -|--|+...+...+-.||.++..   .-...+.+|.|+||+||+.|++.+.++|+=.+.++ ..+|..|+|+|.+|-..|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            35556666666666666665532   12233455667777777777777777777555554 345677777777777777


Q ss_pred             CHHHHHHHHhCCcc
Q 007515          125 RLDVAKQLLNYSSL  138 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~  138 (600)
                      .-|++..|+++|..
T Consensus       706 sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYGCP  719 (749)
T ss_pred             cHHHHHHHHHcCCC
Confidence            77777777776653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.00  E-value=2.2e-05  Score=84.91  Aligned_cols=86  Identities=16%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCch---hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           45 LNTILHLTARFGHEELASEILKLCPE---MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~---~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      +.--.-.|+..|+.-.|+..++....   .++..|.-|+++|+.|+.+.|.+++++|++.+...        ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            44557789999999999999987543   47788999999999999999999999999876443        46888999


Q ss_pred             HhCCHHHHHHHHhCCcc
Q 007515          122 ERGRLDVAKQLLNYSSL  138 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~  138 (600)
                      ..|..+.|+.++.+...
T Consensus        97 ~~~~v~~VE~ll~~~~~  113 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVD  113 (822)
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999987654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.72  E-value=6.8e-05  Score=66.68  Aligned_cols=68  Identities=28%  Similarity=0.239  Sum_probs=50.5

Q ss_pred             ccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC-CCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLG-VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       276 ~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g-ad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      .+|.+|..|+|||+.|+..|..+.+.+|+.+| +++...|..|.++..+|.    ..+..+++..|.+.-.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae----k~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE----KGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH----hcChHHHHHHHHHHhccC
Confidence            57778888888888888888888888888887 788888888888887743    445666777776664433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.68  E-value=3.8e-05  Score=85.53  Aligned_cols=78  Identities=35%  Similarity=0.437  Sum_probs=73.4

Q ss_pred             cccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhh
Q 007515          247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  326 (600)
Q Consensus       247 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~  326 (600)
                      .|.++||.|+..+...+.++|++.   ++.+|..|..|+||||.+...|+...+..|+++|++.++.+.+|++|+++|..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            578999999999999999999998   66699999999999999999999999999999999999999999999999755


Q ss_pred             h
Q 007515          327 D  327 (600)
Q Consensus       327 ~  327 (600)
                      .
T Consensus       732 ~  732 (785)
T KOG0521|consen  732 A  732 (785)
T ss_pred             h
Confidence            4

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.60  E-value=8.3e-05  Score=72.79  Aligned_cols=64  Identities=31%  Similarity=0.387  Sum_probs=38.2

Q ss_pred             hHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCC
Q 007515           83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT  147 (600)
Q Consensus        83 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~  147 (600)
                      |.+||+.|+++.|+.|++.|.+++ .+|....+||++|+..||.++|++|+++|+.-......|.
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            566666666666666666555553 3366666666666666666666666666664443333343

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.49  E-value=0.00016  Score=80.23  Aligned_cols=108  Identities=23%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHh
Q 007515          214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA  293 (600)
Q Consensus       214 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~  293 (600)
                      |++.+|+++..+..-.++.+++.........|.+|...+|+ |..++.+..-+++..  .+.-++.+|..|+||||+|+.
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~--~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA--DGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee--cccccccccCCCCcccchHhh
Confidence            44444444444444444444443112222333444444444 222333333333222  122355555555555555555


Q ss_pred             CCcHHHHHHHHhcCCCccc------ccCCCCCHHHHH
Q 007515          294 GKLTTMVIYLLKLGVDVNA------INRKGYTALDVV  324 (600)
Q Consensus       294 ~~~~~iv~~Ll~~gad~n~------~n~~G~T~l~~a  324 (600)
                      .|+..++..|++.|++...      .+-.|.|+-+++
T Consensus       651 ~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la  687 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPGAVTDPSPETPGGKTAADLA  687 (975)
T ss_pred             cCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhh
Confidence            5555555555554443332      223466666653

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.49  E-value=0.00014  Score=80.58  Aligned_cols=128  Identities=20%  Similarity=0.138  Sum_probs=87.2

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      .....|.|.||+++..+..-+++.+++-.......-+.+|.-.+|+ |..++.+..-+++..+..-+..+|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3445678888888888888888888885222234456666667777 556667777777766666667778888888888


Q ss_pred             HHHhCCHHHHHHHHhCCcccc------cccCCCChHHHHHHhcCCHHHHHHHHhc
Q 007515          120 ACERGRLDVAKQLLNYSSLLI------LEVDGLTTSLHVSAMAGHLDIVKELLEA  168 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~~------~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~  168 (600)
                      |+.+|+..++..|++.++...      ....+|.|+-..|-.+|+..+..+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            888888888888887665433      2222345566666666666655555443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.32  E-value=0.00026  Score=78.95  Aligned_cols=79  Identities=20%  Similarity=0.116  Sum_probs=37.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC
Q 007515           79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH  158 (600)
Q Consensus        79 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (600)
                      |.|+||.|+.+|...++++|++.++++ +..+..|.+|+|.+...|+...+..|++++++....+.++.+++++|....+
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            344444444444444444444444442 3334444444444444444444444444444444444444444444443333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.21  E-value=0.001  Score=59.38  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=55.4

Q ss_pred             ccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 007515          174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ  239 (600)
Q Consensus       174 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~  239 (600)
                      +.+|..|||||+.|+..|+.+.+.+|+.+|.......|..|.+.+.+|-+.|..+++..|.+...+
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            367888999999999999999999999999555566888899999999999999999888886543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.17  E-value=0.00092  Score=65.72  Aligned_cols=54  Identities=28%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             HHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCc
Q 007515          117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQ  170 (600)
Q Consensus       117 L~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~  170 (600)
                      |+.||+.|+.|.|++|++.|.+++..+.....||.+|+..||.++++.|++.|+
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            444555555555555555444444443333344444444444444444444443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.94  E-value=0.0019  Score=65.84  Aligned_cols=66  Identities=24%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             CchhHHHHHHHhccccc---ccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          259 NQYEAVKYLMETLNITK---LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       259 ~~~~iv~~Ll~~~~~~~---~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      .....+++|.++.-.++   -....|.---|+||+|+..|..++|.+||+.|+|+..+|..|.||++++
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            34566777776643321   1223344467999999999999999999999999999999999999983

>smart00248 ANK ankyrin repeats

Probab=96.48  E-value=0.0041  Score=37.23  Aligned_cols=29  Identities=45%  Similarity=0.587  Sum_probs=24.3

Q ss_pred             CCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          283 DGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       283 ~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                      +|+||+|+|+..++.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47889999999999999999998887764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.38  E-value=0.027  Score=33.37  Aligned_cols=26  Identities=46%  Similarity=0.818  Sum_probs=14.7

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhcCCC
Q 007515          180 GHTPLHLSCSKGHLEITRELLKLDPD  205 (600)
Q Consensus       180 g~tpLh~A~~~g~~~iv~~Ll~~~~~  205 (600)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45555555555555555555555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.91  E-value=0.23  Score=44.70  Aligned_cols=19  Identities=26%  Similarity=0.503  Sum_probs=9.0

Q ss_pred             CcHhHHHHHcCCHHHHHHH
Q 007515           80 ETPLHEACREGRLNFVKLF   98 (600)
Q Consensus        80 ~TpLh~Aa~~g~~~iv~~L   98 (600)
                      ++..-.||+..+.++|+|+
T Consensus        77 q~LFElAC~~qkydiV~WI   95 (192)
T PF03158_consen   77 QELFELACEEQKYDIVKWI   95 (192)
T ss_pred             HHHHHHHHHHccccHHHHH
Confidence            3344444444455555544

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.95  E-value=0.64  Score=41.93  Aligned_cols=75  Identities=11%  Similarity=-0.030  Sum_probs=51.2

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHH
Q 007515            9 YMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR   88 (600)
Q Consensus         9 ~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~   88 (600)
                      .+.=-++.|++.|-++.+++.-+.-..    . -....+..-.||+..+.|+|+|+-+.-.    .  .+-.+..-.|..
T Consensus        45 ~~~CLl~HAVk~nmL~ILqkyke~L~~----~-~~~~q~LFElAC~~qkydiV~WI~qnL~----i--~~~~~iFdIA~~  113 (192)
T PF03158_consen   45 DMWCLLYHAVKYNMLSILQKYKEDLEN----E-RYLNQELFELACEEQKYDIVKWIGQNLH----I--YNPEDIFDIAFA  113 (192)
T ss_pred             CHHHHHHHHHHcCcHHHHHHHHHHhhc----c-hhHHHHHHHHHHHHccccHHHHHhhccC----C--CCchhhhhhhhh
Confidence            445567888888888887776543221    1 1245688999999999999999954321    1  122456778888


Q ss_pred             cCCHHH
Q 007515           89 EGRLNF   94 (600)
Q Consensus        89 ~g~~~i   94 (600)
                      ..+.++
T Consensus       114 ~kDlsL  119 (192)
T PF03158_consen  114 KKDLSL  119 (192)
T ss_pred             ccchhH
Confidence            888776

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.86  E-value=0.5  Score=43.90  Aligned_cols=115  Identities=11%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCc----hhhhccCCCCCcHhHHHHH
Q 007515           13 HLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCP----EMVAAENEKMETPLHEACR   88 (600)
Q Consensus        13 ~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~----~~l~~~n~~g~TpLh~Aa~   88 (600)
                      .|-+|+..-|.+.+..++.....         -.++|-+|...+..+++.+|+....    +...+..  +.--+.++..
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd---------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD---------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH---------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHh
Confidence            45667777777777666554322         2467888888888888888887632    2222211  1112333332


Q ss_pred             --cCCHHHHHHHHhCCcccc---cccCCCCCcHHHHHHHhCCHHHHHHHHhCCcc
Q 007515           89 --EGRLNFVKLFVGIDPSVI---YKLNRDNESVLYVACERGRLDVAKQLLNYSSL  138 (600)
Q Consensus        89 --~g~~~iv~~Ll~~~~~~~---~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~  138 (600)
                        ..+..++++.+++|-...   ...-+.|.|-|.-|+.+++.+++..|+++|+.
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence              234666666666653221   22345666777777777777777777776653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.31  E-value=0.15  Score=52.60  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=26.3

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 007515          180 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA  222 (600)
Q Consensus       180 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  222 (600)
                      -.|+||+|+..|..++|.+||+.++|+.. .|..|.||..+++
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~-kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDPST-KDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCchh-cccCCCCcccccc
Confidence            45666666666666666666666655543 5666666666655

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.42  E-value=0.69  Score=42.98  Aligned_cols=117  Identities=22%  Similarity=0.255  Sum_probs=70.0

Q ss_pred             HHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhccccc--ccCCCCCCCChHhHHHH--h
Q 007515          218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK--LANMPDNDGNTILHLAT--A  293 (600)
Q Consensus       218 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~--~~n~~d~~G~T~Lh~A~--~  293 (600)
                      |--|+...+.+.+..++....        .-.+++-+++.++..+++-+|+.......  ...+.  .+.--+.++.  .
T Consensus       157 ledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~h  226 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSEH  226 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhhc
Confidence            455666666666655554221        23456777777777777777776644322  11111  1111222322  2


Q ss_pred             CCcHHHHHHHHhcC-CCcccc---cCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          294 GKLTTMVIYLLKLG-VDVNAI---NRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       294 ~~~~~iv~~Ll~~g-ad~n~~---n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      ..+..++++.+++| +++|.+   -+.|.|-||-    |..++..+++.+|+++||-+.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDN----A~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDN----AMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHh----HHhcCcHHHHHHHHHcCcccc
Confidence            34667788888777 677754   4578888887    556677888888888888543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=91.84  E-value=5.9  Score=40.16  Aligned_cols=128  Identities=10%  Similarity=0.002  Sum_probs=77.5

Q ss_pred             cCccccHHHHHHHHcCCHHHHHHHHhhc-hhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhC-chh-hhccCCCCCcH
Q 007515            6 INPYMERHLFETILRGDTQAFLSLIQQD-EAKIKQTVPGSLNTILHLTARFGHEELASEILKLC-PEM-VAAENEKMETP   82 (600)
Q Consensus         6 ~~~~~~~~L~~A~~~gd~~~~~~ll~~~-~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~-~~~-l~~~n~~g~Tp   82 (600)
                      .++.+...|...+..++.+....++++- +....-..+..|+-.+......+..+....+++.- +.. --..+..|.-.
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            4667788888888888888888887763 22233445677888888888888877666666542 222 22456667666


Q ss_pred             hHHHHHcCCHHHHHHHHhCC-c-ccccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 007515           83 LHEACREGRLNFVKLFVGID-P-SVIYKLNRDNESVLYVACERGRLDVAKQLL  133 (600)
Q Consensus        83 Lh~Aa~~g~~~iv~~Ll~~~-~-~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll  133 (600)
                      +.-+...+..+....+++.- + ...-..|..|...+..+...+..+..+.++
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~  149 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFII  149 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHH
Confidence            66666666644444443321 1 111123566666666666655555444443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.43  E-value=1.7  Score=33.56  Aligned_cols=47  Identities=15%  Similarity=0.036  Sum_probs=26.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 007515           47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGI  101 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~  101 (600)
                      ..|..|+..|+.|+++.+++.+..        ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            345666666666666666654321        03346666666666666666653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.46  E-value=25  Score=35.55  Aligned_cols=226  Identities=10%  Similarity=0.012  Sum_probs=119.8

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHh-Cchh-hhccCCCCCcHhHHHHHcCCHHHHHHHHhCC--cccccccCCCCC
Q 007515           39 QTVPGSLNTILHLTARFGHEELASEILKL-CPEM-VAAENEKMETPLHEACREGRLNFVKLFVGID--PSVIYKLNRDNE  114 (600)
Q Consensus        39 ~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~-~~~~-l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~g~  114 (600)
                      -..+..|.-.|..+...+..+....+++. .+.. --..|..|+-.+......+..+-...+++.-  .-..-..+..|.
T Consensus        15 l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~   94 (322)
T cd07920          15 FAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGC   94 (322)
T ss_pred             ccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhH
Confidence            34566788899999999998888888875 2222 2346677888888888888766555544321  111123466777


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCC--ccc-ccccCCCChHHHHHHhcCCHHHHHHHH----hcCccccccCCCCCChHHHHH
Q 007515          115 SVLYVACERGRLDVAKQLLNYS--SLL-ILEVDGLTTSLHVSAMAGHLDIVKELL----EARQEFAWKKDLNGHTPLHLS  187 (600)
Q Consensus       115 tpL~~A~~~g~~e~v~~Ll~~~--~~~-~~~~~~~~t~Lh~A~~~g~~~~v~~Ll----~~~~~~~~~~d~~g~tpLh~A  187 (600)
                      -.+.-+...+..+....+++.-  ... ...+..|...+..+......+..+.++    .+-..+  ..+..|...+...
T Consensus        95 ~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l--~~~~~G~~vvq~~  172 (322)
T cd07920          95 RVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVAL--STHPYGCRVIQRC  172 (322)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--HcCccccHHHHHH
Confidence            7777676666654444443321  111 112233343444444444444333333    222222  3455676666666


Q ss_pred             HhcCcHH----HHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc--cccccccccchhhHhHhcCch
Q 007515          188 CSKGHLE----ITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS--AEMRTIHGETVLHLTVKNNQY  261 (600)
Q Consensus       188 ~~~g~~~----iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~Lh~Av~~~~~  261 (600)
                      ......+    +++.+...-...  ..|..|+..+..+...+..+..+.+++.-...  .-..+..|...+..+......
T Consensus       173 l~~~~~~~~~~l~~~l~~~~~~L--~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~  250 (322)
T cd07920         173 LEHCSEEQREPLLEEILEHALEL--VQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASK  250 (322)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCH
Confidence            6554433    333333322222  24667777777777776655444444322111  113345666666666666554


Q ss_pred             hHHHHHH
Q 007515          262 EAVKYLM  268 (600)
Q Consensus       262 ~iv~~Ll  268 (600)
                      +.-+.++
T Consensus       251 ~~~~~ii  257 (322)
T cd07920         251 EERELII  257 (322)
T ss_pred             HHHHHHH
Confidence            3333333

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.38  E-value=1.9  Score=33.28  Aligned_cols=47  Identities=15%  Similarity=0.226  Sum_probs=26.8

Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 007515           81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY  135 (600)
Q Consensus        81 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~  135 (600)
                      ..+..|+..|+.+|++.+++.+..        ....+..|+...+-|++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            345666666666666666643311        02346666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	600
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-07
1uoh_A	226	Human Gankyrin Length = 226		8e-09
1uoh_A	226	Human Gankyrin Length = 226		2e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-07
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		5e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		6e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		4e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		6e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 133/293 (45%), Gaps = 16/293 (5%)
Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T LH+ AR GH E+A  +L+     V A+ +  +TPLH A R G  N VKL +    +P+
Sbjct: 49  TPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
           +         + L++A   G ++    LL   +          T LHV+A  G + + + 
Sbjct: 108 LA---TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIK 224
           LLE R         NG TPLH++    +L+I +              N G TPLH AA +
Sbjct: 165 LLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQ 222
Query: 225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG 284
            ++ +   +L     SA   ++ G T LHL  +    E V  L   L+     N+ +  G
Sbjct: 223 NQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALL---LSKQANGNLGNKSG 278
Query: 285 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
            T LHL        +   L+K GV V+A  R GYT L V    AS+ G +++V
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV----ASHYGNIKLV 327

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
           T LH++A  GHL++VK LLEA  +    KD NG TPLHL+   GHLE+ +          
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
               N GRTPLH AA  G + ++  +L         +  +G T LHL  +N   E VK L
Sbjct: 63  AKDKN-GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 268 ME 269
           +E
Sbjct: 121 LE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           GRTPLH AA  G + ++  +L         +  +G T LHL  +N   E VK L+E    
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
               N  D +G T LHLA       +V  LL+ G DVNA ++ G T L +    A+ +G 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGH 113
Query: 334 LQIVPALEEAGA 345
           L++V  L EAGA
Sbjct: 114 LEVVKLLLEAGA 125

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 6/218 (2%)
Query: 75  ENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLN 134
           E++   +PLH A   G ++   + V    + I   + D  + L  A E   L+  K L+ 
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 135 YSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE 194
             +L+  +    +T LH++A  GH ++V+ LL   Q     +D  G TP+  +    H++
Sbjct: 66  AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 195 ITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL 254
           + +              NE    LHWAA  G ++I  EIL           IHG++ LH+
Sbjct: 126 LVK-LLLSKGSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHI 183
Query: 255 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
             + N+Y+ V   +   +   L N    +G T L  A+
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKN---KEGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 5/177 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
           + LH +A AGH+DI   L++A        + +  TPL  +    HLE  +          
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
                EG T LH AA KG   ++  +LS        +   G T +    +    + VK L
Sbjct: 72  PKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 324
              L+     N+ DN+ N  LH A       +   LL    D++A+N  G + L + 
Sbjct: 131 ---LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 74/178 (41%), Gaps = 39/178 (21%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
           L   L  +A AG  D V+ +L A        D +G+TPLHL+ S GHLEI  E       
Sbjct: 14  LGKKLLEAARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                   G TPLH AA  G + I++ +L            HG  V              
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLK-----------HGADV-------------- 106
Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                       N  DNDG+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 107 ------------NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           N  DNDG T LHLA +     +V  LLK G DVNA +  G T L +    A+ +G L+IV
Sbjct: 41  NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL----AAATGHLEIV 96
Query: 338 PALEEAGA 345
             L + GA
Sbjct: 97  EVLLKHGA 104

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
           T LH++A  GHL+IV+ LL+A  +    KD +G+TPLHL+  +GHLEI  E         
Sbjct: 49  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADV 106
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
                +G TPLH AA +G + I++ +L         +   G+T   +++ N   +  + L
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           +G TPLH AA +G + I++ +L         +   G T LHL  +    E V+ L++   
Sbjct: 46  DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 102
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                N  D DG T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
           L   L  +A AG  D V+ +L A       KD +G+TPLHL+  +GHLEI  E       
Sbjct: 2   LGKKLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                  +G TPLH AA +G + I++ +L         +   G T LHL  +    E V+
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 266 YLMETLNITKLANMPDNDGNTILHLA 291
            L++        N  D  G T   LA
Sbjct: 119 VLLKA---GADVNAQDKFGKTPFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           +G TPLH AA +G + I++ +L         +   G T LHL  +    E V+ L++   
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 332
                N  D DG T LHLA       +V  LLK G DVNA ++ G T  D+    A ++G
Sbjct: 91  -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL----AIDNG 145
Query: 333 ALQIVPALEEAG 344
              I   L++A 
Sbjct: 146 NEDIAEVLQKAA 157

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
           T LH++A  GHL++VK LLEA  +    KD NG TPLHL+   GHLE+ +          
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEIL 234
               N GRTPLH AA  G + ++  +L
Sbjct: 63  AKDKN-GRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 179 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 238
           NG TPLHL+   GHLE+ +              N GRTPLH AA  G + ++  +L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
                +  +G T LHL  +N   E VK L+E
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
           +G T LHL  +N   E VK L+E        N  D +G T LHLA       +V  LL+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           G DVNA ++ G T L +    A+ +G L++V  L EAGA
Sbjct: 58  GADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
           T LH++A  GHL+IV+ LL+A  +    KD +G+TPLHL+  +GHLEI  E         
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADV 94
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEIL 234
                +G TPLH AA +G + I++ +L
Sbjct: 95  NAKDKDGYTPLHLAAREGHLEIVEVLL 121

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           +G TPLH AA +G + I++ +L         +   G T LHL  +    E V+ L++   
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 332
                N  D DG T LHLA       +V  LLK G DVNA ++ G T  D+    A   G
Sbjct: 91  -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL----AIREG 145
Query: 333 ALQIVPALEEAG 344
              I   L++A 
Sbjct: 146 HEDIAEVLQKAA 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 117 LYVACERGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
           L  A E G  D  K LL N + +   + DG  T LH++A  GH ++VK LL ++      
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDG-KTPLHLAAENGHKEVVKLLL-SQGADPNA 65
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
           KD +G TPLHL+   GH E+ +              ++G+TPLH AA  G   ++  +LS
Sbjct: 66  KDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 236 LNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYL 267
              Q A+  T    G T L L  ++   E VK L
Sbjct: 125 ---QGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYLMET 270
           +G+TPLH AA  G   ++  +LS   Q A+   +   G+T LHL  +N   E VK L   
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLS---QGADPNAKDSDGKTPLHLAAENGHKEVVKLL--- 89
Query: 271 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 330
           L+     N  D+DG T LHLA       +V  LL  G D N  +  G T LD+    A  
Sbjct: 90  LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL----ARE 145
Query: 331 SGALQIVPALEEAGA 345
            G  ++V  LE+ G 
Sbjct: 146 HGNEEVVKLLEKQGG 160

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 77/195 (39%), Gaps = 40/195 (20%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
           L   L  +A AG  D V+ +L A        D  GHTPLHL+   GHLEI  E       
Sbjct: 14  LGKKLLEAARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                 N G TPLH AA  G + I++ +L            HG  V              
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLK-----------HGADV-------------- 106
Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
                       N  D +G T LHLA       +V  LLK G DVNA ++ G TA D + 
Sbjct: 107 ------------NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFD-IS 153
Query: 326 SDASNSGALQIVPAL 340
            D  N    +I+  L
Sbjct: 154 IDNGNEDLAEILQKL 168

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 90  GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
           G+L+ +K  +  D S+  + ++D+ + L+ AC  G  ++ + LL     +  + D   + 
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXX 209
           LH++A AG  +IVK LL  +       + NG TPLH + SK   EI              
Sbjct: 77  LHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 210 XXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
              +  T +H AA KG + ++  IL     S  ++   G T LHL     + E  K+L+
Sbjct: 136 DHYDA-TAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 124 GRLDVAKQ-LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
           G+LD  K+ +L   SL         T+LH +  AGH +IV+ LL+       K D  G +
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWS 75
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAE 242
           PLH++ S G  EI +              N G TPLH+AA K R  I   +L     + +
Sbjct: 76  PLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
            +  +  T +H        + V  L   L      N+ D +GNT LHLA   +      +
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHIL---LFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 303 LLKLGVDVNAINRKGYTALDVVE 325
           L+  G  +   N++  T L V +
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAK 213

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 117 LYVACERGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
           L  A E G  D  K L+ N + +   + DG  T LH +A  GH +IVK LL ++      
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDG-RTPLHYAAKEGHKEIVK-LLISKGADVNA 65
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
           KD +G TPLH +  +GH EI +              ++GRTPLH+AA +G   I+  ++S
Sbjct: 66  KDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 236 LNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYL 267
              + A++ T    G T L L  ++   E VK L
Sbjct: 125 ---KGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
           ++GRTPLH+AA +G   I+  ++S        +   G T LH   K    E VK L    
Sbjct: 35  SDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLL---- 89
Query: 272 NITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 329
            I+K A  N  D+DG T LH A       +V  L+  G DVN  +  G T LD+    A 
Sbjct: 90  -ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL----AR 144
Query: 330 NSGALQIVPALEEAGA 345
             G  +IV  LE+ G 
Sbjct: 145 EHGNEEIVKLLEKQGG 160

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 90  GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
           G+L+ +K  +  D S+  + ++D+ + L+ AC  G  ++ + LL     +  + D   + 
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXX 209
           LH++A AG  +IVK LL  +       + NG TPLH + SK   EI              
Sbjct: 77  LHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 210 XXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
              +  T +H AA KG + ++  IL     S  ++   G T LHL     + E  K+L+
Sbjct: 136 DHYDA-TAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 124 GRLDVAKQ-LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
           G+LD  K+ +L   SL         T+LH +  AGH +IV+ LL+       K D  G +
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWS 75
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAE 242
           PLH++ S G  EI +              N G TPLH+AA K R  I   +L     + +
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
            +  +  T +H        + V  L   L      N+ D +GNT LHLA   +      +
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHIL---LFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 303 LLKLGVDVNAINRKGYTALDVVE 325
           L+  G  +   N++  T L V +
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAK 213

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
           N G TPLH AA+ G + I+ E+L  +    +   ++G T LHL       E V+ L   L
Sbjct: 45  NTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL---L 100
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                 N  D  G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
           TT LH++A +GHL+IV+ LL+   +     D+ G+TPLHL+   GHLEI  E        
Sbjct: 48  TTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIV-EVLLKNGAD 105
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
                ++G TPLH AA  G + I+ E+L  +      +   G+T   +++ N   E +  
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAE 163
Query: 267 LMETLN 272
           +++ LN
Sbjct: 164 ILQKLN 169

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
           N G TPLH AA  G + I+ E+L  +    +   + G T LHL       E V+ L++  
Sbjct: 45  NTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN- 102
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                 N  D+DG T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
           ++GRTPLH+AA  G   I+  +LS        +   G T LH   +N   E VK L   L
Sbjct: 35  SDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLL---L 90
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS 331
           +     N  D+DG T LH A       +V  LL  G D N  +  G T LD+    A   
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL----AREH 146
Query: 332 GALQIVPALEEAGA 345
           G  +IV  LE+ G 
Sbjct: 147 GNEEIVKLLEKQGG 160

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILS--LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
           + G+TPLH AAIKG + I++ +L    ++ +A+     G+T LHL       E V+ L++
Sbjct: 45  DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM---GDTPLHLAALYGHLEIVEVLLK 101
Query: 270 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                   N  D  G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 102 N---GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 90  GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
           G+L  +K  +  D S+  + ++D+ + L+ AC  G  ++ + LL     +  + D   + 
Sbjct: 18  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 150 LHVSAMAGHLDIVKELL-EARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXX 208
           LH++A AG  +IVK LL +  Q  A  +  NG TPLH + SK   EI             
Sbjct: 78  LHIAASAGRDEIVKALLGKGAQVNAVNQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Query: 209 XXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
               E  T +H AA KG + +I  IL     S  ++   G T LHL     + E  K L+
Sbjct: 136 KDHYEA-TAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 84/214 (39%), Gaps = 34/214 (15%)
Query: 144 DGLTTSLHVS--AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXX 201
           +G  ++L V   A +G L+ +KE + A +  A + D +  T LH +CS GH EI  E   
Sbjct: 3   EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLL 61
Query: 202 XXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY 261
                     + G +PLH AA  GR  I+  +L    Q   +   +G T LH     N++
Sbjct: 62  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRH 120
Query: 262 EAVKYLMET------------------------------LNITKLANMPDNDGNTILHLA 291
           E    L+E                               L      N+ D +GNT LHLA
Sbjct: 121 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Query: 292 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
              +       L+  G  +   N++  T L V +
Sbjct: 181 CDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 90  GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
           G+L  +K  +  D S+  + ++D+ + L+ AC  G  ++ + LL     +  + D   + 
Sbjct: 17  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 150 LHVSAMAGHLDIVKELL-EARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXX 208
           LH++A AG  +IVK LL +  Q  A  +  NG TPLH + SK   EI             
Sbjct: 77  LHIAASAGRDEIVKALLGKGAQVNAVNQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 209 XXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
               E  T +H AA KG + +I  IL     S  ++   G T LHL     + E  K L+
Sbjct: 135 KDHYEA-TAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 34/215 (15%)
Query: 143 VDGLTTSLHVS--AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXX 200
           ++G  ++L V   A +G L+ +KE + A +  A + D +  T LH +CS GH EI  E  
Sbjct: 1   MEGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFL 59
Query: 201 XXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ 260
                      + G +PLH AA  GR  I+  +L    Q   +   +G T LH     N+
Sbjct: 60  LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNR 118
Query: 261 YEAVKYLMET------------------------------LNITKLANMPDNDGNTILHL 290
           +E    L+E                               L      N+ D +GNT LHL
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Query: 291 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
           A   +       L+  G  +   N++  T L V +
Sbjct: 179 ACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           G TPLH AA  G + I+ E+L  N          G T LHL  K    E V+ L   L  
Sbjct: 47  GDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL---LKY 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
               N  D  G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           +GRTPLH AA  G   ++  ++S        +   G T LH   +N   E VK L     
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLL----- 89
Query: 273 ITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 330
           I+K A  N  D+DG T LH A       +V  L+  G DVN  +  G T LD+    A  
Sbjct: 90  ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL----ARE 145
Query: 331 SGALQIVPALEEAGA 345
            G  ++V  LE+ G 
Sbjct: 146 HGNEEVVKLLEKQGG 160

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXX 203
           D  +T LH++A  GH +IV+ LL+   +    +D +G TPLHL+   GHLEI  E     
Sbjct: 45  DQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIV-EVLLKY 102
Query: 204 XXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA 263
                     G TPLH AA +G + I+ E+L  +      +   G+T   +++ N   E 
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-ED 160
Query: 264 VKYLMETLN 272
           +  +++ LN
Sbjct: 161 LAEILQKLN 169

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
           ++G TPLH AA  G   I+ E+L  +      R   G T LHL   N   E V+ L   L
Sbjct: 45  DQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL---L 100
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                 N  D  G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR 169
           ++D  S L+VA   GR D+   LL + +            LH++   GH  +VK LL++ 
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINI 229
            +   KKDL+G+TPL  +CS GH E+                N+G T LH A I+  + +
Sbjct: 143 AK-PNKKDLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           + E+L L+  S ++      T +    +N++      +ME L +
Sbjct: 201 V-ELLLLHGASVQVLNKRQRTAVDCAEQNSK------IMELLQV 237

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-- 270
           +G +PLH AA+ GR ++I  +L  +  +A  R       LHL  +   ++ VK L+++  
Sbjct: 85  DGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 271 -LNITKLA---------------------------NMPDNDGNTILHLATAGKLTTMVIY 302
             N   L+                           N  +N GNT LH A   K   +V  
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 303 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 339
           LL  G  V  +N++  TA+D  E ++     LQ+VP+
Sbjct: 204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
           L  A   GR D  + L+   + +  E     T LH++A  GHL+IV+ LL+   +     
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AV 76
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
           D  G TPL L+   GHLEI  E              EG TPLH AA+ G + I+ E+L  
Sbjct: 77  DHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV-EVLLK 134
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           N      +   G+T   +++ N   E +  +++ LN
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ +L A       +D +G TPLHL+   GHLEI  E             +
Sbjct: 21  AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDH 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
            G TPL  AA+ G + I++ +L            +G  V                     
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLK-----------NGADV--------------------- 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                N  D +G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 107 -----NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           G TPLH AA  G + I+ E+L  N          G T LHL       E V+ L++    
Sbjct: 47  GWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN--- 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
               N  D++G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 108 KLNRDNESVLYVAC---ERG-RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
           +L  D +S L++A    E+   ++V +Q+    + L  + +   T LH++ +    +I +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPL 218
            LL A  +   + D  G+TPLHL+C +G L     +T+              N  G T L
Sbjct: 63  ALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 219 HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 278
           H A+I G + I++ ++SL          +G T LHL V                   L N
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN 163
Query: 279 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
            PD                 +V  LLK G DVN +  +GY+
Sbjct: 164 -PD-----------------LVSLLLKCGADVNRVTYQGYS 186

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 75/195 (38%), Gaps = 40/195 (20%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
           L   L  +A AG  D V+ +L A        D  G TPLHL  + GHLEI  E       
Sbjct: 14  LGKKLLEAARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYAA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                   G TPLH AA +G + I++ +L            +G  V              
Sbjct: 72  DVNASDKSGWTPLHLAAYRGHLEIVEVLLK-----------YGADV-------------- 106
Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
                       N  D  G T LHLA       +V  LLK G DVNA ++ G TA D + 
Sbjct: 107 ------------NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFD-IS 153
Query: 326 SDASNSGALQIVPAL 340
            D  N    +I+  L
Sbjct: 154 IDNGNEDLAEILQKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
           G T LHL V N   E ++ L   L      N  D  G T LHLA       +V  LLK G
Sbjct: 47  GITPLHLVVNNGHLEIIEVL---LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            DVNA++ +GYT L +   D    G L+IV  L + GA
Sbjct: 104 ADVNAMDYQGYTPLHLAAED----GHLEIVEVLLKYGA 137

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 46/220 (20%)
Query: 109 LNRDNESVLYVAC---ERG-RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
           L  D +S L++A    E+   ++V +Q+    + L  + +   T LH++ +    +I + 
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPLH 219
           LL A  +   + D  G+TPLHL+C +G L     +T+              N  G T LH
Sbjct: 61  LLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 119
Query: 220 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 279
            A+I G + I++ ++SL          +G T LHL V                   L N 
Sbjct: 120 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN- 160
Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
           PD                 +V  LLK G DVN +  +GY+
Sbjct: 161 PD-----------------LVSLLLKCGADVNRVTYQGYS 183

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 67/171 (39%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ L+    +     D NG TPLHL+ + G LEI  E             +
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
            G TPLH AA  G + I++ +L            HG  V                     
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLK-----------HGADV--------------------- 98
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                N  D  G T LHLA       +V  LLK G DVNA +  G TA D+
Sbjct: 99  -----NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 231 DEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
           DE+  L    A++     +G T LHL   N Q E V+ L++        N  D+ G T L
Sbjct: 20  DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN---GADVNASDSAGITPL 76
Query: 289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           HLA       +V  LLK G DVNA +R G+T L +    A+ SG L+IV  L + GA
Sbjct: 77  HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL----AALSGQLEIVEVLLKHGA 129

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           G TPLH AA  G + I+ E+L  N      +   G T LHL  +    E V+ L++    
Sbjct: 47  GWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN--- 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
               N  D+ G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           GRTPLH AA  G + I+ E+L  N         +G T LHL       E V+ L   L  
Sbjct: 35  GRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL---LKY 90
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
               N  D  G T L+LA       +V  LLK G DVNA ++ G TA D+
Sbjct: 91  GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 87  CREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL 146
           CREG    V+L++    + + + +    S L+ AC  GR  V + L+   + + +   G 
Sbjct: 13  CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHLEITRE 198
            T LH++A  GH DIV++LL+      +K D+N     G+ PLH +C  G  ++  +
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWGQDQVAED 123

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
           G TPLH AA  G + I+ E+L  N          G T LHL       E V+ L++    
Sbjct: 47  GWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN--- 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
               N  D++G T LHLA       +V  LLK G DVNA ++ G TA D +  D  N   
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDL 161
Query: 334 LQIVPAL 340
            +I+  L
Sbjct: 162 AEILQKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ +L A        D +G TPLHL+ + GHLEI  E              
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
            G TPLH AA+ G + I++ +L            HG  V                     
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLLK-----------HGADV--------------------- 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                N  D  G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 107 -----NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 87  CREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL 146
           CREG    V+L++    + + + +    S L+ AC  GR  V + L+   + + +   G 
Sbjct: 8   CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHLEITRE 198
            T LH++A  GH DIV++LL+      +K D+N     G+ PLH +C  G  ++  +
Sbjct: 68  DTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWGQDQVAED 118

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ +L A        D +G TPLHL+ + GHLEI  E              
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
            G TPLH AA+ G + I++ +L            HG  V                     
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLLK-----------HGADV--------------------- 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
                N  D  G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 107 -----NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 72  VAAENEKMETPLHEACREGRLNFVKLFVGIDPSV-IYKLNRDNESVLYVACERGRLDVAK 130
           VA + E ++ PLHEA + G L++++    +D  V +  L++   + LY AC  G  D+ +
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLREC--LDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 131 QLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELL 166
            L    ++ + + + L  T+LH +A  G+ DIV+ LL
Sbjct: 124 XLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXX 207
           LH + M      V+ELL ++     +KD +G  PLH S S    EIT             
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKY 266
               + G TP H A   G + ++  +    L+    + T  G T LHL V    +E  ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 267 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 321
           L+E     ++    D      LH A +     ++  L  LG   VN  +++G+T L
Sbjct: 126 LIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXX 207
           LH + M      V+ELL ++     +KD +G  PLH S S    EIT             
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKY 266
               + G TP H A   G + ++  +    L+    + T  G T LHL V    +E  ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 267 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 321
           L+E     ++    D      LH A +     ++  L  LG   VN  +++G+T L
Sbjct: 126 LIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXX 207
           LH + M      V+ELL ++     +KD +G  PLH S S    EIT             
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKY 266
               + G TP H A   G + ++  +    L+    + T  G T LHL V    +E  ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 267 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 321
           L+E     ++    D      LH A +     ++  L  LG   VN  +++G+T L
Sbjct: 126 LIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
           +PLHEAC  G L+ VK+ +    + +  +  D  + L+ AC  G  D    LL + + + 
Sbjct: 94  SPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
            E D L + +H +A  GH++ V  L+        K    G TPL+L+C
Sbjct: 153 PESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLAC 198

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNG-----HTPLHLSCSKGHLEITREXXXX 202
           + LH + + GHL  VK LL+   +      +NG     HTPL  +C  G  +        
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQ------VNGVTADWHTPLFNACVSGSWDCVN--LLL 145
Query: 203 XXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE 262
                    ++  +P+H AA +G +  ++ +++    + + +  H  T L+L  +N Q  
Sbjct: 146 QHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRA 204
Query: 263 AVKYLMET---LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
            VK L+E+   +N  K  + P       LH         +   L+  G D  A N +G  
Sbjct: 205 CVKKLLESGADVNQGKGQDSP-------LHAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Query: 320 ALDVVESDA 328
            +++V  ++
Sbjct: 258 PVELVPPES 266

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEF-AWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
           T LH +A+   +D+VK  +           DLN  TPLH +  +GHL +  +        
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWATRQGHLSMVVQLMKYGADP 102
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
                 EG + +H AA  G  +I+  +++   Q  +M   +G T L              
Sbjct: 103 SLID-GEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 267 LMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
           L+ T N++   N+ D    NT LH A     TT++  LL+ G +V+A N KG +ALD+ +
Sbjct: 161 LLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           E  T LHWAAI  RI+++   +S      ++      T LH   +      V  LM+   
Sbjct: 41  ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--- 97
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
                ++ D +G + +HLA     T++V YL+  G DV+ +++ G T L
Sbjct: 98  YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ +L A        D  GHTPLHL+   GHLEI  E             N
Sbjct: 21  AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGN 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
            GRTPLH AA    + I+ E+L  +      +   G+T   +++ N   +  + L +
Sbjct: 79  TGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
           +G TPLH AA  G    + ++LS        R+  G T LHL  KN   E VK L+    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
                N    DGNT  HLA       +V  L   G DVNA
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
           G T LH   KN   E VK L   L+     N    DGNT LHLA       +V  LL  G
Sbjct: 9   GNTPLHNAAKNGHAEEVKKL---LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            DVNA ++ G T     E  A  +G  +IV  L+  GA
Sbjct: 66  ADVNARSKDGNTP----EHLAKKNGHHEIVKLLDAKGA 99

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
           +PLHEAC  G L+ VK+ +     V   +  D  + L+ AC  G  D    LL + + + 
Sbjct: 38  SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
            E D L + +H +A  GH++ V  L+        K    G TPL+L+C
Sbjct: 97  PESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLAC 142

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ +L A        D +G TPLHL+   GHLEI  E             N
Sbjct: 21  AARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIV-EVLLKYGADVNAEDN 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
            G TPLH AAI+G + I+ E+L  +      +   G+T   +++ N   E +  +++ LN
Sbjct: 79  FGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
           G T LHL    +  E V+ L++        N  DNDG+T LHLA       +V  LLK G
Sbjct: 47  GNTPLHLAADYDHLEIVEVLLKH---GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPAL 340
            DVNA ++ G TA D +  D  N    +I+  L
Sbjct: 104 ADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 231 DEILSLNLQSAEMR--TIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTI 287
           +E+L L  + A++    + G T LH    ++  + VK+L+E   NI    N PDN+G   
Sbjct: 54  EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI----NQPDNEGWIP 109
Query: 288 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
           LH A +     +  YL+  G  V A+N +G T LD+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLEA 168
           N + +  L  A + G ++  K+L    S+   +++G  +T LH +A    + +V+ LL+ 
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
             +    KD  G  PLH +CS GH E+  E                 TPLH AA KG+  
Sbjct: 67  GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 229 IIDEIL 234
           I   +L
Sbjct: 125 ICKLLL 130

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLEA 168
           N + +  L  A + G ++  K+L    S+   +++G  +T LH +A    + +V+ LL+ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
             +    KD  G  PLH +CS GH E+  E                 TPLH AA KG+  
Sbjct: 65  GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 229 IIDEIL 234
           I   +L
Sbjct: 123 ICKLLL 128

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDG-LTTSLHVSAMAGHLDIVKELLEA 168
           N + +  L  A + G ++  K+L    S+   +++G  +T LH +A    + +V+ LL+ 
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
             +    KD  G  PLH +CS GH E+  E                 TPLH AA KG+  
Sbjct: 69  GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 229 IIDEIL 234
           I   +L
Sbjct: 127 ICKLLL 132

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
           +T LH++A    + IV+ LL+   +    KD  G  PLH +CS GH E+T E        
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVT-ELLLKHGAC 116
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
                    TPLH AA K R+ +   +LS       +   HG++ + +       E + Y
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTY 175
Query: 267 LMETLNITKLANMPD------------------NDGNTILHLATAG---KLTTMVIYLLK 305
             +  ++ + A   D                      T LH A A    K   +   LL+
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 306 LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 346
            G +VN  N+   T L V    A N     ++  L + GA+
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAK 272

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
           D   T LH++A  GHL+IV+ LL+   +    +D+ G TPLHL+ + GHLEI
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEI 95

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 160 DIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXXX 205
           D+ K+LLEA         R   A   D+N     G TPLHL+  +GHLEI  E       
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                   GRTPLH AA  G + I++ +L         +   G+T   +++ N   E + 
Sbjct: 72  DVNARDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
            +++ LN
Sbjct: 130 EILQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 160 DIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXXX 205
           D+ K+LLEA         R   A   D+N     G TPLHL+  +GHLEI  E       
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                 + GRTPLH AA  G + I++ +L         +   G+T   +++ N   E + 
Sbjct: 72  DVNASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
            +++ LN
Sbjct: 130 EILQKLN 136

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 172 FAWKKDLNGHTPLHLSCSKGHLEITREXX---XXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
            A + D +G TPLH++  +G+L                     N  +TPLH A I    +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 229 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTI 287
           ++  +++       +   HG+T  HL  ++     ++ L+++     L     N DG T 
Sbjct: 61  VVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 288 LHLATAGKLTTMVIYLLKLGVDVNAINRK 316
           LH+A   +    V  LL+ G D++A++ K
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIK 148

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
           +A AG  D V+ L+     F    D  G +PLHL+   GH   T E              
Sbjct: 9   AARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTT-EVLLRAGVSRDARTK 65
Query: 213 EGRTPLHWAAIKGRINIIDEIL--SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
             RTPLH AA +G  NI++ +L    ++ + +M  +   T LH   ++N  E V+ L++
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---TALHWATEHNHQEVVELLIK 121

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 160 DIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXXX 205
           D+ K+LLEA         R   A   D+N     G TPLHL+  +GHLEI  E       
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
                   GRTPLH AA  G + I++ +L         +   G+T   +++ N   E + 
Sbjct: 72  DVNASDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
            +++ LN
Sbjct: 130 EILQKLN 136

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           ++P+++G T LH A     T +V +L++ GV+VNA +  G+T L      A++   +Q+ 
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 338 PALEEAGA 345
             L E+GA
Sbjct: 120 KFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           ++P+++G T LH A     T +V +L++ GV+VNA +  G+T L      A++   +Q+ 
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 338 PALEEAGA 345
             L E+GA
Sbjct: 120 KFLVESGA 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	600
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-52
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-47
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-47
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-46
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-45
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-44
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-41
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-41
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-40
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-22
2rfa_A	232	Transient receptor potential cation channel subfa	2e-33
2rfa_A	232	Transient receptor potential cation channel subfa	5e-25
2rfa_A	232	Transient receptor potential cation channel subfa	3e-18
2rfa_A	232	Transient receptor potential cation channel subfa	9e-09
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-17
2etb_A	256	Transient receptor potential cation channel subfam	9e-29
2etb_A	256	Transient receptor potential cation channel subfam	1e-26
2etb_A	256	Transient receptor potential cation channel subfam	8e-17
2etb_A	256	Transient receptor potential cation channel subfam	6e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  190 bits (486), Expect = 1e-54
 Identities = 92/308 (29%), Positives = 137/308 (44%), Gaps = 28/308 (9%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH+ AR GH E+A  +L+   + V A+ +  +TPLH A R G  N VKL +    + 
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN- 105

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIV 162
                      + L++A   G ++    LL   +    +   G  T LHV+A  G + + 
Sbjct: 106 --PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVA 162

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
           + LLE  A          NG TPLH++    +L+I + LL       S P   G TPLH 
Sbjct: 163 ELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHI 218

Query: 221 AAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLA 277
           AA + ++ +   +L            ++ G T LHL  +    E V  L+    N     
Sbjct: 219 AAKQNQVEVARSLLQ---YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG---- 271

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           N+ +  G T LHL        +   L+K GV V+A  R GYT L V    AS+ G +++V
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV----ASHYGNIKLV 327

Query: 338 PALEEAGA 345
             L +  A
Sbjct: 328 KFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  187 bits (477), Expect = 2e-53
 Identities = 83/306 (27%), Positives = 129/306 (42%), Gaps = 24/306 (7%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH+ +  GH  +   +L+         N K+ETPLH A R G     K  +      
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK- 72

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIV 162
             +    +D+++ L+ A   G  ++ K LL  ++   +    G  T LH++A  GH++ V
Sbjct: 73  --VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETV 129

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
             LLE  A Q         G TPLH++   G + +   LL+ D   ++     G TPLH 
Sbjct: 130 LALLEKEASQA---CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHV 185

Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANM 279
           A     ++I+  +L     S      +G T LH+  K NQ E  + L++   +     N 
Sbjct: 186 AVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA----NA 240

Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 339
               G T LHLA       MV  LL    + N  N+ G T L +     +  G + +   
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL----VAQEGHVPVADV 296

Query: 340 LEEAGA 345
           L + G 
Sbjct: 297 LIKHGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  186 bits (474), Expect = 6e-53
 Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 30/308 (9%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T LH+ AR GH E    +L+      A   +K  TPLH A + G++   +L +       
Sbjct: 115 TPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-- 171

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVK 163
                 ++  + L+VA     LD+ K LL    S      +G T  LH++A    +++ +
Sbjct: 172 -PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVAR 229

Query: 164 ELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA 221
            LL+          + + G TPLHL+  +GH E+   LL    + +   +  G TPLH  
Sbjct: 230 SLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLV 285

Query: 222 AIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-- 277
           A +G + + D ++         +  T  G T LH+       + VK+L     +   A  
Sbjct: 286 AQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVASHYGNIKLVKFL-----LQHQADV 337

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           N     G + LH A     T +V  LLK G   N ++  G T L +    A   G + + 
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI----AKRLGYISVT 393

Query: 338 PALEEAGA 345
             L+    
Sbjct: 394 DVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  186 bits (474), Expect = 7e-53
 Identities = 85/307 (27%), Positives = 132/307 (42%), Gaps = 26/307 (8%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH  AR GH  +  ++L               TPLH A REG +  V   +      
Sbjct: 81  QTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS- 138

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
                + +   + L+VA + G++ VA+ LL   +          T LHV+    +LDIVK
Sbjct: 139 --QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

Query: 164 ELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA 221
            LL              NG+TPLH++  +  +E+ R LL+     ++    +G TPLH A
Sbjct: 197 LLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-ESVQGVTPLHLA 252

Query: 222 AIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLAN 278
           A +G   ++  +LS   + A   +    G T LHL  +         L++  + +    +
Sbjct: 253 AQEGHAEMVALLLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV----D 305

Query: 279 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVP 338
                G T LH+A+      +V +LL+   DVNA  + GY+ L      A+  G   IV 
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ----AAQQGHTDIVT 361

Query: 339 ALEEAGA 345
            L + GA
Sbjct: 362 LLLKNGA 368

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  185 bits (471), Expect = 1e-52
 Identities = 83/280 (29%), Positives = 125/280 (44%), Gaps = 27/280 (9%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
              E   TPLH A   G L  VK  +  G         N   E+ L++A   G  +VAK 
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGAS---PNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 132 LLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSC 188
           LL   + +     D  T  LH +A  GH ++VK LLE  A           GHTPLH++ 
Sbjct: 66  LLQNKAKVNAKAKDDQT-PLHCAARIGHTNMVKLLLENNANPN---LATTAGHTPLHIAA 121

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTI 246
            +GH+E    LL+ +   + +   +G TPLH AA  G++ + + +L    + A       
Sbjct: 122 REGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLE---RDAHPNAAGK 177

Query: 247 HGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK 305
           +G T LH+ V +N  + VK L+    +     + P  +G T LH+A       +   LL+
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSP----HSPAWNGYTPLHIAAKQNQVEVARSLLQ 233

Query: 306 LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            G   NA + +G T L +    A+  G  ++V  L    A
Sbjct: 234 YGGSANAESVQGVTPLHL----AAQEGHAEMVALLLSKQA 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  174 bits (445), Expect = 7e-49
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 35/295 (11%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH+ A++G   +A E+L        A  +   TPLH A     L+ VKL +  G   
Sbjct: 147 FTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS- 204

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAGHL 159
              +    +  + L++A ++ +++VA+ LL Y        +  +    T LH++A  GH 
Sbjct: 205 --PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG----SANAESVQGVTPLHLAAQEGHA 258

Query: 160 DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 217
           ++V  LL   A        + +G TPLHL   +GH+ +   L+K    + +     G TP
Sbjct: 259 EMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTP 314

Query: 218 LHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 275
           LH A+  G I ++  +L      A    +T  G + LH   +    + V  L     +  
Sbjct: 315 LHVASHYGNIKLVKFLLQ---HQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-----LKN 366

Query: 276 LA--NMPDNDGNTILHLATAGKLTTMVIYLLKL---GVDVNAINRKGYTALDVVE 325
            A  N   +DG T L +A      ++   L  +      V   ++   +  + V+
Sbjct: 367 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  160 bits (407), Expect = 2e-43
 Identities = 52/272 (19%), Positives = 105/272 (38%), Gaps = 24/272 (8%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH+     + ++   +L        +      TPLH A ++ ++   +  +  G   
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS- 237

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIV 162
                 +    + L++A + G  ++   LL+  +   +    GLT  LH+ A  GH+ + 
Sbjct: 238 --ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVA 294

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
             L++     +        G+TPLH++   G++++ + LL+   D+++     G +PLH 
Sbjct: 295 DVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQ 350

Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP 280
           AA +G  +I+  +L  N  S    +  G T L +  +         L    + T    + 
Sbjct: 351 AAQQGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 409

Query: 281 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
           D    +                +L +  D   
Sbjct: 410 DKHRMSFPETVD---------EILDVSEDEGE 432

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
                 G T LH+A+      +V  LL+ G   N  N K  T L +    A+ +G  ++ 
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM----AARAGHTEVA 63

Query: 338 PALEEAGA 345
             L +  A
Sbjct: 64  KYLLQNKA 71

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  171 bits (435), Expect = 3e-48
 Identities = 57/286 (19%), Positives = 116/286 (40%), Gaps = 32/286 (11%)

Query: 72  VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
               +++    +H A R+G+ + V+  +  G+ P++    NR   + L++AC+ G +D A
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ---NRFGCTALHLACKFGCVDTA 69

Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
           K L +   +      G    +H++ MA   D+V  L+E            G  P  L   
Sbjct: 70  KYLASVGEV-HSLWHGQK-PIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNE 120

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ---SAEMRTI 246
               E+     ++   +      +G+T LHW    G   +  E++ + +Q   S   +  
Sbjct: 121 CDEREVN----EIGSHV---KHCKGQTALHWCVGLGPEYL--EMIKILVQLGASPTAKDK 171

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLL 304
             ET L   ++    EA+  +M+T+        +  +  GN+ LH A       + +  +
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231

Query: 305 KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQ 350
           ++G+DVN  + +    L +    +  +  + +   L +       Q
Sbjct: 232 EMGIDVNMEDNEHTVPLYL----SVRAAMVLLTKELLQKTDVFLIQ 273

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  168 bits (427), Expect = 5e-47
 Identities = 37/303 (12%), Positives = 86/303 (28%), Gaps = 50/303 (16%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
              +HL       +L    L      V    E+ + P             ++  G     
Sbjct: 85  QKPIHLAVMANKTDLV-VAL------VEGAKERGQMPESLLNECDEREVNEI--GSH--- 132

Query: 106 IYKLNRDNESVLYVACERG--RLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
               +   ++ L+     G   L++ K L+   +              T  L  +    +
Sbjct: 133 --VKHCKGQTALHWCVGLGPEYLEMIKILVQLGA----SPTAKDKADET-PLMRAMEFRN 185

Query: 159 LDIVKELLEARQEFAW----KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEG 214
            + +  +++     +       +  G++ LH +      ++    +++  D++   DNE 
Sbjct: 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM-EDNEH 244

Query: 215 RTPLHWAAIKGRINIIDEILS----LNLQSAE--------MRTIHGETVLHLTVKNNQYE 262
             PL+ +     + +  E+L       +Q+             +     +      ++ E
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 263 AVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTA 320
            ++ L       KL       N G              +    L     V   +R    +
Sbjct: 305 VLQLL-----QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARS 359

Query: 321 LDV 323
             V
Sbjct: 360 SAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  166 bits (422), Expect = 2e-46
 Identities = 49/319 (15%), Positives = 102/319 (31%), Gaps = 44/319 (13%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              +H+ AR G  +    +++        +N    T LH AC+ G ++  K     G   
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH 79

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
           S         +  +++A    + D+   L+  +       +       +       ++ +
Sbjct: 80  S-----LWHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLNECDEREVNE 128

Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWA 221
                       K   G T LH     G  +LE+ + L++L    ++  D    TPL  A
Sbjct: 129 IGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRA 180

Query: 222 AIKGRINIIDEILSLNLQSA----EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 277
                   +D ++      +    +     G + LH  +  N  +          +    
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF-----VEMGI 235

Query: 278 --NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD-------- 327
             NM DN+    L+L+    +  +   LL+            +    V+           
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 328 -ASNSGALQIVPALEEAGA 345
            A++    +++  L+E   
Sbjct: 296 AAADPSKQEVLQLLQEKLD 314

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  136 bits (345), Expect = 1e-35
 Identities = 38/272 (13%), Positives = 73/272 (26%), Gaps = 46/272 (16%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG--RLNFVKLFV--GI 101
                L       E+  EI          ++ K +T LH     G   L  +K+ V  G 
Sbjct: 112 QMPESLLNECDEREVN-EIG------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164

Query: 102 DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL------ILEVDGLTTSLHVSAM 155
                   ++ +E+ L  A E    +    +++                G +  LH + +
Sbjct: 165 S---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAIL 220

Query: 156 AGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL---- 209
               D+    +E          +D     PL+LS     + +T+ELL+            
Sbjct: 221 INWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277

Query: 210 --------PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY 261
                           +  AA   +  ++ ++L   L         G        K    
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVL-QLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336

Query: 262 EAVKYLMETLNITKLA--NMPDNDGNTILHLA 291
              +       +   A              ++
Sbjct: 337 AVKRMK-----LAPSAPVRTRSRSRARSSAVS 363

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  167 bits (426), Expect = 7e-47
 Identities = 52/327 (15%), Positives = 104/327 (31%), Gaps = 45/327 (13%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
                     G++ L  +      ++      +    LH     G     +      ++ 
Sbjct: 62  LYPNPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVN- 118

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV---------DGLTTSLHVSA 154
             I    R N +VL+        + ++ L+ + +   +           D  T  L ++ 
Sbjct: 119 --IID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-PLMLAV 174

Query: 155 MAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL--P 210
           +A    +V  L++  A        + +  + LH + +     +   +L        +   
Sbjct: 175 LARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231

Query: 211 DNEGRTPLHWAAIKGRINIID----------EILSLNLQSAEMRTIHGETVLHLTVKNNQ 260
           D  G T L   A     + +           ++        +     G T LH   + + 
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 261 YEAVKYLMETL--NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY 318
              VKYL+     N     +  D DG T + LA       +V+YL++ G  V A++   +
Sbjct: 292 MPIVKYLVGEKGSNK----DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 347

Query: 319 TALDVVESDASNSGALQIVPALEEAGA 345
           TA  +    A  +    IV   +    
Sbjct: 348 TARQL----AQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  138 bits (351), Expect = 2e-36
 Identities = 46/291 (15%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
              LH     G   +   I +    ++   + +  T LH           +  +  +   
Sbjct: 95  PIKLHT-EAAGSYAITEPITRESVNIIDPRHNR--TVLHWIASNSSAEKSEDLIVHEAKE 151

Query: 106 -------IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVS 153
                  +  ++ D  + L +A    R  +   L+   +    +         + +LH +
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA----DPTIYNKSERS-ALHQA 206

Query: 154 AMAGHLDIVKELLEARQEFAW--KKDLNGHTPLHLSCSKGHLEI--TRELL--------K 201
           A      ++  +L + +      + D NG T L +       +   + +LL         
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266

Query: 202 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY 261
                      +GRT LH+AA    + I+  ++     + + +   G+T + L  +  + 
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326

Query: 262 EAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 310
           E V YL     I + A     D   +T   LA A     +V    +   + 
Sbjct: 327 EVVMYL-----IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (327), Expect = 4e-33
 Identities = 48/288 (16%), Positives = 89/288 (30%), Gaps = 43/288 (14%)

Query: 80  ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
           +  L EA  +G +   +           +L   +          G   +          +
Sbjct: 38  QHSLLEASYDGYIKRQRN----------ELQHYSLYPNPQGYGNGNDFLGDFNHTNLQ-I 86

Query: 140 ILEVDGLT-TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE 198
             E +  +   LH  A AG   I + +             +  T LH   S    E + +
Sbjct: 87  PTEPEPESPIKLHTEA-AGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSED 143

Query: 199 LLKLDPDLSSLP-------DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGE 249
           L+  +              D +  TPL  A +  R  ++  ++      A   +      
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK---AGADPTIYNKSER 200

Query: 250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK---LTTMVIYLLKL 306
           + LH    N  +  + Y++ +  +       D +G T L +    +          L++ 
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

Query: 307 GVDVN--------AINRKGYTALDVVESDASNSGALQIVPAL-EEAGA 345
           G  V+        +   KG TAL      A+    + IV  L  E G+
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHY----AAQVSNMPIVKYLVGEKGS 304

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  113 bits (286), Expect = 1e-27
 Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 25/203 (12%)

Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL 200
             +     SL  ++  G++   +                   P       G+  +     
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 201 KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAE-MRTIHGETVLHLTVKNN 259
                 +  P+ E    LH  A  G   I + I     +S   +   H  TVLH    N+
Sbjct: 82  TNLQIPTE-PEPESPIKLHTEA-AGSYAITEPITR---ESVNIIDPRHNRTVLHWIASNS 136

Query: 260 QYEAVKYLMETLNITKLA-----NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
             E  + L+       +A     N  D D NT L LA   +   +V YL+K G D    N
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196

Query: 315 RKGYTALDVVESDASNSGALQIV 337
           +   +AL      A+ +    ++
Sbjct: 197 KSERSAL----HQAAANRDFGMM 215

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 5/98 (5%), Positives = 16/98 (16%), Gaps = 17/98 (17%)

Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
            +  L     +   +  +            N   +                +  +     
Sbjct: 37  SQHSLLEASYDGYIKRQR------------NELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84

Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
                   +    L       +  G+  I   +     
Sbjct: 85  QIPTEPEPESPIKLHT----EAA-GSYAITEPITRESV 117

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  163 bits (416), Expect = 2e-46
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 33/290 (11%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
           N +L    +    +L  ++L+    +   E E   TPLH A +  R + V+L +  G D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD- 64

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
                  ++  +   +A   G + + K  L+  +    +V      G  T+   +A+ G 
Sbjct: 65  --PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA----DVNECDFYG-FTAFMEAAVYGK 117

Query: 159 LDIVKELLEA---------RQEFAWKKDLNGHTPLHLSCSKGHLEITRELL-KLDPDLSS 208
           +  +K L +           +E   +    G T L  +  KGH+E+ + LL ++  D+++
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177

Query: 209 LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA----EMRTIHGETVLHLTVKNNQYEAV 264
             DN GR  L  A +    + ++ I  L L        +R   G+T L L V+      V
Sbjct: 178 -CDNMGRNALIHALLSSDDSDVEAITHL-LLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 265 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
           + L+E  +I    N  D+DG T L LA   KL  +   L K G   +  +
Sbjct: 236 QRLLEQEHIEI--NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  159 bits (405), Expect = 8e-45
 Identities = 59/290 (20%), Positives = 111/290 (38%), Gaps = 42/290 (14%)

Query: 80  ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
              L +A +   ++ V+  +    +V ++      + L+ A +  R D+ + LL + +  
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-- 63

Query: 140 ILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGH 192
             +      +G  T   ++A+AG + ++K  L   A      + D  G T    +   G 
Sbjct: 64  --DPVLRKKNGA-TPFLLAAIAGSVKLLKLFLSKGADVN---ECDFYGFTAFMEAAVYGK 117

Query: 193 LEITRELLK---------LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA-- 241
           ++  + L K            +        G T L  AA KG + ++ +IL L+   A  
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL-KIL-LDEMGADV 175

Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETL-----NITKLANMPDNDGNTILHLATAGKL 296
                 G   L   + ++    V+ +   L     ++    N+    G T L LA   K 
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV----NVRGERGKTPLILAVEKKH 231

Query: 297 TTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
             +V  LL +  +++N  +  G TAL +    A      +I   L + GA
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLL----AVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  144 bits (365), Expect = 4e-39
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 31/255 (12%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLE- 167
             ++  +L  A +   +D+ +QLL   +++   E +G  T LH +      DIV+ LL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 168 -ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR 226
            A       +  NG TP  L+   G +++ +  L    D++   D  G T    AA+ G+
Sbjct: 62  GADPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGK 117

Query: 227 INIIDEILS---------LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL--NITK 275
           +  +  +              +  E     G T L    +    E +K L++ +  ++  
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-- 175

Query: 276 LANMPDNDGNTILHLATA----GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS 331
             N  DN G   L  A        +  +   LL  G DVN    +G T L      A   
Sbjct: 176 --NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL----ILAVEK 229

Query: 332 GALQIVPAL-EEAGA 345
             L +V  L E+   
Sbjct: 230 KHLGLVQRLLEQEHI 244

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  158 bits (403), Expect = 9e-44
 Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 29/284 (10%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
           +T LHL A +    +   +L+   + V A+++    PLH AC  G     +L +  G   
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC- 116

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIV 162
             +  ++    + L+ A  + R++V   LL++ +   ++   G + ++ ++      + +
Sbjct: 117 --VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS-AVDMAPTPELRERL 173

Query: 163 KELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA 222
                            GH+ L  +  +  L   ++ L L+            T LH A 
Sbjct: 174 TYEF------------KGHSLLQAAR-EADLAKVKKTLALEIINFK-QPQSHETALHCAV 219

Query: 223 IKGRINIID--EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANM 279
                      E+L     +   +     T LH+  +    + ++ L +    +    N 
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM----NA 275

Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
            D+ G T LH A           LL  G D + I+ +G+TA  +
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  152 bits (387), Expect = 2e-41
 Identities = 69/309 (22%), Positives = 124/309 (40%), Gaps = 38/309 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              L   AR G+EE    +L        A + +  TPLH A    R+  V+L +  G D 
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD- 83

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIV 162
             ++  ++     L+ AC  G  +V + LL + + +  +++    T LH +A    +++ 
Sbjct: 84  --VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF-TPLHEAASKNRVEVC 140

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
             LL   A        + +G + + ++ +    E      K            G + L  
Sbjct: 141 SLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQ- 184

Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN---NQYEAVKYLMET-LNITKL 276
           AA +  +  + + L+L +     +    ET LH  V +    + +  + L+    N+   
Sbjct: 185 AAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV--- 240

Query: 277 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 336
            N  + D  T LH+A       ++  L K G  +NA++  G TAL      A+ +G LQ 
Sbjct: 241 -NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR----AALAGHLQT 295

Query: 337 VPALEEAGA 345
              L   G+
Sbjct: 296 CRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  150 bits (381), Expect = 1e-40
 Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 40/281 (14%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              LH    +GH E+  E+L      V A +    TPLHEA  + R+    L +  G D 
Sbjct: 92  LVPLHNACSYGHYEVT-ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD- 149

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
                +N   +S + +A      +         SLL              A    L  VK
Sbjct: 150 --PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA------------AREADLAKVK 195

Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKGH---LEITRELLKLDPDLSSLPDNEGRTPLHW 220
           + L        K+  +  T LH + +  H    ++   LL+   +++   + +  TPLH 
Sbjct: 196 KTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHV 253

Query: 221 AAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA- 277
           AA +   ++++ +       A+M      G+T LH        +  + L     ++  + 
Sbjct: 254 AAERAHNDVMEVLHK---HGAKMNALDSLGQTALHRAALAGHLQTCRLL-----LSYGSD 305

Query: 278 -NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG 317
            ++    G T   +         V  +L     +   +   
Sbjct: 306 PSIISLQGFTAAQMGNE-----AVQQILSESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (370), Expect = 4e-39
 Identities = 59/285 (20%), Positives = 103/285 (36%), Gaps = 45/285 (15%)

Query: 74  AENEKMETPLHEACREG-RLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAK 130
              E  +  L EA R G     + L     ++    +  +    + L++A    R+ + +
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMALLTPLNVN---CHASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 131 QLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTP 183
            LL + +    +V      GL   LH +   GH ++ + LL+  A        DL   TP
Sbjct: 76  LLLQHGA----DVHAKDKGGL-VPLHNACSYGHYEVTELLLKHGACVN---AMDLWQFTP 127

Query: 184 LHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM 243
           LH + SK  +E+   LL    D + + +  G++ +  A        +             
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERL-TYE--------- 176

Query: 244 RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA---GKLTTMV 300
               G ++L    + +  +  K L   +              T LH A A    K   + 
Sbjct: 177 --FKGHSLLQAAREADLAKVKKTLALEIIN----FKQPQSHETALHCAVASLHPKRKQVA 230

Query: 301 IYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
             LL+ G +VN  N+   T L V    A+      ++  L + GA
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHV----AAERAHNDVMEVLHKHGA 271

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
            G + L L+       +T              + +    L  AA  G    +  +L+   
Sbjct: 3   FGKSALDLADPSAKAVLTG-------------EYKKDE-LLEAARSGNEEKLMALLTPLN 48

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKL 296
            +         T LHL    N+   V+ L     +   A  +  D  G   LH A +   
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQLL-----LQHGADVHAKDKGGLVPLHNACSYGH 103

Query: 297 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
             +   LLK G  VNA++   +T L     +A++   +++   L   GA
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPL----HEAASKNRVEVCSLLLSHGA 148

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.8 bits (159), Expect = 2e-11
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 26/137 (18%)

Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH-LTVKNNQYEAVKYLMET 270
             G++ L  A    +  +  E              + +  L       N+ + +  L   
Sbjct: 2   EFGKSALDLADPSAKAVLTGE--------------YKKDELLEAARSGNEEKLMALL--- 44

Query: 271 LNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 328
                    +  D   +T LHLA       +V  LL+ G DV+A ++ G   L      A
Sbjct: 45  --TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN----A 98

Query: 329 SNSGALQIVPALEEAGA 345
            + G  ++   L + GA
Sbjct: 99  CSYGHYEVTELLLKHGA 115

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  155 bits (394), Expect = 3e-43
 Identities = 58/308 (18%), Positives = 113/308 (36%), Gaps = 43/308 (13%)

Query: 51  LTARFGHEELASEILKLCPEMVAAENEKME----TPLHEACREGRLNFVKLFVGIDPSVI 106
           + +   H   +S ++     M + + ++       P       G          +     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN---PLMGD-- 55

Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAGHLDIV 162
                 + S ++ A   G     + L++        V+ +T    + LH + + GHL  V
Sbjct: 56  ---AVSDWSPMHEAAIHGHQLSLRNLISQGW----AVNIITADHVSPLHEACLGGHLSCV 108

Query: 163 KELLEARQEFAW--KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
           K LL+     A       + HTPL  +C  G  +    LL+    +   P+++  +P+H 
Sbjct: 109 KILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHE 163

Query: 221 AAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 278
           AA +G +  ++ +++        + +  H  T L+L  +N Q   VK L     +   A+
Sbjct: 164 AARRGHVECVNSLIA---YGGNIDHKISHLGTPLYLACENQQRACVKKL-----LESGAD 215

Query: 279 M-PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           +      ++ LH         +   L+  G D  A N +G   +++          L  +
Sbjct: 216 VNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL----VPPESPLAQL 271

Query: 338 PALEEAGA 345
             LE  GA
Sbjct: 272 -FLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  132 bits (335), Expect = 6e-35
 Identities = 52/271 (19%), Positives = 93/271 (34%), Gaps = 54/271 (19%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           + +H  A  GH+      L      V        +PLHEAC  G L+ VK+ +  G    
Sbjct: 61  SPMHEAAIHGHQLSL-RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-- 117

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
            +  +  D  + L+ AC  G  D    LL + + +  E D   + +H +A  GH++ V  
Sbjct: 118 -VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNS 175

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA 222
           L+      +    K  +  TPL+L+C        ++LL+   D++        +PLH   
Sbjct: 176 LIAYGGNID---HKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVV 230

Query: 223 IKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN 282
                 +   ++             G              A        +        + 
Sbjct: 231 RTASEELACLLMD-----------FG--------------A--------DT----QAKNA 253

Query: 283 DGNTILHLATA-GKLTTMVIYLLKLGVDVNA 312
           +G   + L      L    ++L + G  +  
Sbjct: 254 EGKRPVELVPPESPLA--QLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  113 bits (285), Expect = 3e-28
 Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 26/195 (13%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            + LH     GH      +LK   + V        TPL  AC  G  + V L +  G   
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

Query: 104 SVIYKLNRDNE--SVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAG 157
                   +++  S ++ A  RG ++    L+ Y       +D       T L+++    
Sbjct: 152 ------QPESDLASPIHEAARRGHVECVNSLIAYGG----NIDHKISHLGTPLYLACENQ 201

Query: 158 HLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 215
               VK+LLE  A       +     +PLH        E+   L+    D  +  + EG+
Sbjct: 202 QRACVKKLLESGADVN----QGKGQDSPLHAVVRTASEELACLLMDFGADTQA-KNAEGK 256

Query: 216 TPLHWAAIKGRINII 230
            P+     +  +  +
Sbjct: 257 RPVELVPPESPLAQL 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  150 bits (380), Expect = 2e-41
 Identities = 46/287 (16%), Positives = 82/287 (28%), Gaps = 41/287 (14%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS- 136
           +T LH A       F+   +        +   N   ++ L++A   G     ++L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 137 SLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR------------QEFAWKKDLNGHTPL 184
            +L+ E  G T +LH++           LL+ R             +         H P 
Sbjct: 70  GVLVAERGGHT-ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 185 HLSCSKGHLEITRELL---KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL-----SL 236
            +                 +L  +     + +G TPLH A I     ++  +L      L
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAE---NYDGHTPLHVAVIHKDAEMV-RLLRDAGADL 184

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGK 295
           N          G T LHL V+      ++ L++   +           G T L  A    
Sbjct: 185 NKPEPT----CGRTPLHLAVEAQAASVLELLLKAGADP----TARMYGGRTPLGSALLRP 236

Query: 296 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 342
              +   L   G           +        + +          +E
Sbjct: 237 NPILARLLRAHGAPEPEDGGDKLSPCSS----SGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  145 bits (369), Expect = 9e-40
 Identities = 54/269 (20%), Positives = 87/269 (32%), Gaps = 34/269 (12%)

Query: 46  NTILHLTARFGHEELASEIL---KLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--G 100
           +T LHL     HE    + L       E +  +N+  +T LH A   G  + V+     G
Sbjct: 10  DTALHLAVIHQHEPFL-DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 101 IDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLT------------ 147
                +    R   + L++AC       A  LL    S      D               
Sbjct: 69  AG---VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
               V +     +  +   E  +     ++ +GHTPLH++      E+ R L     DL+
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVK 265
                 GRTPLH A      ++++ +L      A+   R   G T L   +        +
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLK---AGADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 266 YLMETLNITKLA--NMPDNDGNTILHLAT 292
            L         A       D  +    + 
Sbjct: 243 LL-----RAHGAPEPEDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  134 bits (339), Expect = 1e-35
 Identities = 59/262 (22%), Positives = 87/262 (33%), Gaps = 34/262 (12%)

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLL----NYSSLLILEVDGLTTSLHVSAMAGHLD 160
           V   +  D ++ L++A           LL     +  L +    G  T+LH++A+ G   
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEAS 59

Query: 161 IVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS---------- 208
            V++L    A        +  GHT LHL+C          LL+  P              
Sbjct: 60  TVEKLYAAGAGVL---VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 209 --LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
                +    P    +     N  +          E     G T LH+ V +   E V+ 
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176

Query: 267 LMETLNITKLA--NMPDND-GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
           L         A  N P+   G T LHLA   +  +++  LLK G D  A    G T L  
Sbjct: 177 L-----RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

Query: 324 VESDASNSGALQIVPALEEAGA 345
               A       +   L   GA
Sbjct: 232 ----ALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 3e-21
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 11/167 (6%)

Query: 42  PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV-- 99
           P + +    + ++   E       +     + AEN    TPLH A        V+L    
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 100 GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGH 158
           G D +          + L++A E     V + LL   +        G T  L  + +  +
Sbjct: 181 GADLNK--PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT-PLGSALLRPN 237

Query: 159 LDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD 203
             + + L    A +    +   +  +P   S S    +   E  + D
Sbjct: 238 PILARLLRAHGAPEP---EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  147 bits (375), Expect = 5e-41
 Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 20/243 (8%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
            E++   +PLH A   G ++   + V  G +   I   + D  + L  A E   L+  K 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 132 LLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK 190
           L+   +L+   + +G T  LH++A  GH ++V+ LL   Q     +D  G TP+  +   
Sbjct: 63  LIKAGALVDPKDAEGST-CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 191 GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHG 248
            H+++ + LL    D++   DNE    LHWAA  G ++I + +L+      ++    IHG
Sbjct: 122 KHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIAEILLA---AKCDLHAVNIHG 177

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKL 306
           ++ LH+  + N+Y+ V        +++ +   + + +G T L  A+        + + K 
Sbjct: 178 DSPLHIAARENRYDCVVLF-----LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

Query: 307 GVD 309
             D
Sbjct: 233 LQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  146 bits (370), Expect = 2e-40
 Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLE- 167
           +++  S L+ A E G +D+   L+   +++     D  T  L  +A   HL+ VK L++ 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKA 66

Query: 168 -ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAI 223
            A  +    KD  G T LHL+  KGH E+ + LL    +D +     D+ G TP+ WA  
Sbjct: 67  GALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ---DDGGWTPMIWATE 120

Query: 224 KGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM-- 279
              ++++  +LS   + +   +R       LH    +   +  + L     +    ++  
Sbjct: 121 YKHVDLVKLLLS---KGSDINIRDNEENICLHWAAFSGCVDIAEIL-----LAAKCDLHA 172

Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 339
            +  G++ LH+A        V+  L    DV   N++G T L      AS +  +     
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC----ASLNSQVWSALQ 228

Query: 340 LEEAGA 345
           + +A  
Sbjct: 229 MSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  138 bits (351), Expect = 1e-37
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 20/230 (8%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            + LH  A  GH ++   +L      +   +E   TPL EA     L  VK  +  G   
Sbjct: 12  RSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL- 69

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVD--GLTTSLHVSAMAGHLDI 161
             +   + +  + L++A ++G  +V + LL+   + +   D  G  T +  +    H+D+
Sbjct: 70  --VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDL 126

Query: 162 VKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 219
           VK LL   +       +D   +  LH +   G ++I   LL    DL +  +  G +PLH
Sbjct: 127 VKLLLSKGSDIN---IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIHGDSPLH 182

Query: 220 WAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYL 267
            AA + R + +   LS   + +   ++   GET L     N+Q  +   +
Sbjct: 183 IAARENRYDCVVLFLS---RDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  121 bits (307), Expect = 1e-31
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
            +  N  +PLH +   GH++I   L++   ++ +    + RTPL  AA    +  +  ++
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 235 SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET--LNITKLANMPDNDGNTILHL 290
                 A  + +   G T LHL  K   YE V+YL+    +++    N  D+ G T +  
Sbjct: 65  K---AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV----NCQDDGGWTPMIW 117

Query: 291 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           AT  K   +V  LL  G D+N  + +    L      A+ SG + I   L  A  
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHW----AAFSGCVDIAEILLAAKC 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (290), Expect = 2e-29
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 19/197 (9%)

Query: 47  TILHLTARFGHEELASEIL-----KLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGI 101
           T L   A   H E   + L           V  ++ +  T LH A ++G    V+  +  
Sbjct: 46  TPLMEAAENNHLEAV-KYLIKAGAL-----VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

Query: 102 DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLD 160
               +   +    + +  A E   +D+ K LL+  S + I + +     LH +A +G +D
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVD 158

Query: 161 IVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 218
           I + LL            +++G +PLH++  +   +     L  D D++   + EG TPL
Sbjct: 159 IAEILLAAKCDLH---AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-KNKEGETPL 214

Query: 219 HWAAIKGRINIIDEILS 235
             A++  ++    ++  
Sbjct: 215 QCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.9 bits (232), Expect = 2e-21
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
           +T LHL A+ GH E+   +L      V  +++   TP+  A     ++ VKL +  G D 
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD- 136

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIV 162
             I   + +    L+ A   G +D+A+ LL     L  + + G  + LH++A     D V
Sbjct: 137 --INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG-DSPLHIAARENRYDCV 193

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
              L   +       K+  G TPL  +     +    ++ K   D
Sbjct: 194 VLFLSRDSDVT---LKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTM 299
           +M   +  + LH   +    +    L     +   A  +    D  T L  A        
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHML-----VQAGANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 300 VIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           V YL+K G  V+  + +G T L +    A+  G  ++V  L   G 
Sbjct: 60  VKYLIKAGALVDPKDAEGSTCLHL----AAKKGHYEVVQYLLSNGQ 101

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (374), Expect = 6e-41
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 57/282 (20%)

Query: 72  VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           +   ++     + +A + G     +  V  G D   + + +++N ++L+ A    R+D+ 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD---VRQPDKENVTLLHWAAINNRIDLV 58

Query: 130 KQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHL 186
           K  ++  + +  L  D  +T LH +   GHL +V +L++  A        D  G + +HL
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHL 115

Query: 187 SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 246
           +   GH  I   L+    D+    D  G TPL WAA +                      
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYRT--------------------- 153

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDN-DGNTILHLATAGKLTTMVIYL 303
                       +  +  + L     +T     N+ D    NT LH A     TT++  L
Sbjct: 154 ------------HSVDPTRLL-----LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 304 LKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           L+ G +V+A N KG +ALD+    A     + ++  L+EA  
Sbjct: 197 LEAGANVDAQNIKGESALDL----AKQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  140 bits (355), Expect = 3e-38
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
              +    ++G  E   E+++   + V   +++  T LH A    R++ VK ++     V
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
                  N + L+ A  +G L +  QL+ Y +   +++ +G  + +H++A  GH  IV  
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG-CSCIHLAAQFGHTSIVAY 127

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGH-LEITRELLKLDPDLSSLPDNEGRTPLHWA 221
           L+      +     D NG TPL  +  + H ++ TR LL  +  ++        T LHWA
Sbjct: 128 LIAKGQDVD---MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

Query: 222 AIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
            + G   +I  +L      A  + + I GE+ L L  +      + +L E
Sbjct: 185 VLAGNTTVISLLLE---AGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG-RLNFVKLFVGIDPS 104
            + +HL A+FGH  + + ++    + V   ++   TPL  A      ++  +L +  + S
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVK 163
           V         + L+ A   G   V   LL   +++    + G + +L ++    ++ ++ 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMIN 227

Query: 164 ELLEARQEFAWK 175
            L EARQ   + 
Sbjct: 228 HLQEARQAKGYD 239

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  146 bits (370), Expect = 3e-40
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 15/249 (6%)

Query: 71  MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAK 130
           M+A+ +       +    E     +  F+    S+  + +R  E+ L++A    R D AK
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74

Query: 131 QLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
           +LL  S+   I +  G  T LH +  A    + + L+  R      +  +G TPL L+  
Sbjct: 75  RLLEASADANIQDNMGR-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIH 247
                +  +L+    D+++  D+ G++ LHWAA    ++    +L      A  +M+   
Sbjct: 134 LAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK---NGANKDMQNNR 189

Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLK 305
            ET L L  +   YE  K L     +   A  ++ D+       +A       +V  L  
Sbjct: 190 EETPLFLAAREGSYETAKVL-----LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244

Query: 306 LGVDVNAIN 314
                +  +
Sbjct: 245 EHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  127 bits (321), Expect = 2e-33
 Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 12/203 (5%)

Query: 145 GLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP 204
           G   + +         ++ + +        + D  G T LHL+      +  + LL+   
Sbjct: 22  GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 264
           D +   DN GRTPLH A       +   ++       + R   G T L L  +      +
Sbjct: 82  DANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140

Query: 265 KYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 322
           + L     I   A  N  D+ G + LH A A       + LLK G + +  N +  T L 
Sbjct: 141 EDL-----INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195

Query: 323 VVESDASNSGALQIVPALEEAGA 345
           +    A+  G+ +    L +  A
Sbjct: 196 L----AAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (287), Expect = 1e-28
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 175 KKDLNGHTPLHLSCSKG-------------HLEITRELLKLDPDLSSLPDNEGRTPLHWA 221
            +  +G TPL ++   G                +  + +     L +  D  G T LH A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 222 AIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET--LNITKLA 277
           A   R +    +L     SA   ++   G T LH  V  +     + L+     ++    
Sbjct: 65  ARYSRSDAAKRLLE---ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---- 117

Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           +   +DG T L LA    +  M+  L+    DVNA++  G +AL      A+    +   
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW----AAAVNNVDAA 173

Query: 338 PALEEAGA 345
             L + GA
Sbjct: 174 VVLLKNGA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  147 bits (374), Expect = 3e-40
 Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 32/279 (11%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
             + K +         G    ++  V          K+  D+ +V   AC  G  +   +
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKT----KVKFDDGAVFLAACSSGDTEEVLR 58

Query: 132 LLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSC 188
           LL   + +    VDGLT +LH + +  ++D+VK L+E  A      + D  G  PLH + 
Sbjct: 59  LLERGADINYANVDGLT-ALHQACIDDNVDMVKFLVENGANIN---QPDNEGWIPLHAAA 114

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG 248
           S G+L+I   L+     + ++ ++EG TPL  A  +    ++ +   +N Q         
Sbjct: 115 SCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELL-QNE-VNRQGV-----DI 166

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHLATAGKLTTMVIYLLKL 306
           E       +    +A ++L      +   N       G T LH+A A   T ++  L++ 
Sbjct: 167 EAARKEEERIMLRDARQWL-----NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
             DVN  +  G+T L      A++ G  +    L E   
Sbjct: 222 RYDVNIKDYDGWTPLHA----AAHWGKEEACRILVENLC 256

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  146 bits (370), Expect = 1e-39
 Identities = 59/314 (18%), Positives = 106/314 (33%), Gaps = 37/314 (11%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
                L    G E    E   +  +    + +        AC  G    V   +  G D 
Sbjct: 9   KRNEQLKRWIGSETDL-EPPVVKRKKTKVKFDD-GAVFLAACSSGDTEEVLRLLERGAD- 65

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAGHL 159
             I   N D  + L+ AC    +D+ K L+   +     ++         LH +A  G+L
Sbjct: 66  --INYANVDGLTALHQACIDDNVDMVKFLVENGA----NINQPDNEGWIPLHAAASCGYL 119

Query: 160 DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 217
           DI + L+   A        +  G TPL ++  +   E+ +  +       +    +    
Sbjct: 120 DIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEV-------NRQGVDIEAA 169

Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKL 276
                     +   + L+    +       G T LH+       E +K L++   ++   
Sbjct: 170 RKEEERIMLRDAR-QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV--- 225

Query: 277 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 336
            N+ D DG T LH A           L++   D+ A+N+ G TA DV    A       +
Sbjct: 226 -NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV----ADEDILGYL 280

Query: 337 VPALEEAGARRCDQ 350
               ++      ++
Sbjct: 281 EELQKKQNLLHSEK 294

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  145 bits (368), Expect = 2e-39
 Identities = 48/278 (17%), Positives = 99/278 (35%), Gaps = 28/278 (10%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
             +       G  E    +L+   + +   N    T LH+AC +  ++ VK  V  G + 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGAN- 98

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIV 162
             I + + +    L+ A   G LD+A+ L++  + +  +  +G T  L ++      +++
Sbjct: 99  --INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT-PLDIAEEEAMEELL 155

Query: 163 KELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA 222
           +  +        ++ ++              +  + L     +        G T LH AA
Sbjct: 156 QNEVN-------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-HAKSGGTALHVAA 207

Query: 223 IKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM- 279
            KG   ++  ++          ++   G T LH      + EA + L     +  L +M 
Sbjct: 208 AKGYTEVLKLLIQ---ARYDVNIKDYDGWTPLHAAAHWGKEEACRIL-----VENLCDME 259

Query: 280 -PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
             +  G T   +A    L  +     K  +  +    K
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.4 bits (137), Expect = 8e-09
 Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 49/177 (27%)

Query: 45  LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GID 102
           +        R    +   + L           +   T LH A  +G    +KL +    D
Sbjct: 166 IEAARKEEERIMLRDAR-QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIV 162
            ++     +D                               DG  T LH +A  G  +  
Sbjct: 225 VNI-----KDY------------------------------DGW-TPLHAAAHWGKEEAC 248

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 217
           + L+E     E     +  G T   ++       +     K +        +E R  
Sbjct: 249 RILVENLCDME---AVNKVGQTAFDVADEDILGYLEELQKKQNLL-----HSEKREK 297

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  144 bits (365), Expect = 1e-39
 Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 33/252 (13%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAGHLDIVKEL 165
           + D ++ L++A  +G L    +L+N       E+D       T LH++ +     +V+ L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 166 LE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL----KLDPDLSSLPDNEGRTPLH 219
           +   A        D +G T  HL+C        R LL        DL +  + +G T LH
Sbjct: 66  VTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALH 121

Query: 220 WAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 275
            A        +  +L     ++    +     G + L   V+NN    V+ L     +  
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIK----SGRSPLIHAVENNSLSMVQLL-----LQH 172

Query: 276 LA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
            A  N     G++ LH A+   L  +V  L++ G D +  N    T L V    A +   
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV----ARSRRV 228

Query: 334 LQIVPALEEAGA 345
           + I+       A
Sbjct: 229 IDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  142 bits (361), Expect = 4e-39
 Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 20/236 (8%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKM---ETPLHEACREGRLNFVKLFV--G 100
           +T LH+    G+      ++ L  +     +      +TPLH A      + V+L V  G
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 101 IDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAM 155
                   L+R  ++  ++ACE       + LL+ ++   L++     DGL T+LHV+  
Sbjct: 70  AS---PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVN 125

Query: 156 AGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 215
               + V+ LLE   +       +G +PL  +     L + + LL+   ++++     G 
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSGS 184

Query: 216 TPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
           + LH A+ +G + ++  ++      A   ++  H +T L +       + ++    
Sbjct: 185 SALHSASGRGLLPLVRTLVR---SGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  137 bits (348), Expect = 3e-37
 Identities = 47/250 (18%), Positives = 100/250 (40%), Gaps = 24/250 (9%)

Query: 71  MVAAENEKMETPLHEACREGRLNFVKLFV------GIDPSVIYKLNRDNESVLYVACERG 124
           M    +E  +TPLH A  +G L  V   V      G +   +   N   ++ L++A    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITT 57

Query: 125 RLDVAKQLLNYS-SLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAW---KKDLNG 180
              V + L+    S + L+  G T + H++        ++ LL++          ++ +G
Sbjct: 58  LPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 181 HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS 240
            T LH++ +    E  + LL+   D+ ++    GR+PL  A     ++++  +L      
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ---HG 173

Query: 241 A--EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLT 297
           A    +   G + LH          V+ L+ +  +     ++ +   +T L +A + ++ 
Sbjct: 174 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS----SLKNCHNDTPLMVARSRRVI 229

Query: 298 TMVIYLLKLG 307
            ++       
Sbjct: 230 DILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.4 bits (119), Expect = 9e-07
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKL----GVDVNAINRKGYTALDVVESDASNS 331
           +A   D DG+T LH+A        V  L+ L    G +++  N    T L +    A  +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL----AVIT 56

Query: 332 GALQIVPALEEAGA 345
               +V  L  AGA
Sbjct: 57  TLPSVVRLLVTAGA 70

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  143 bits (362), Expect = 2e-39
 Identities = 42/261 (16%), Positives = 82/261 (31%), Gaps = 45/261 (17%)

Query: 79  METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
           M  P  +  + G++                        ++ A          +L      
Sbjct: 1   MSKPPPKPVKPGQV-----------------------KVFRALYTFEPRTPDELYIEEGD 37

Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE 198
           +I   D   T+       G   ++            ++  +   PLH +  +G+L   RE
Sbjct: 38  IIYITDMSDTNWWKGTSKGRTGLIPSNY------VAEQAESIDNPLHEAAKRGNLSWLRE 91

Query: 199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTV 256
            L     ++ L D  G T L+WA   G  +I+ E+L     + E+  +   G+T LH   
Sbjct: 92  CLDNRVGVNGL-DKAGSTALYWACHGGHKDIV-EML-FTQPNIELNQQNKLGDTALHAAA 148

Query: 257 KNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
                + V+ L     + K A  ++ + +      +AT     +++             N
Sbjct: 149 WKGYADIVQLL-----LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203

Query: 315 RKGYTALDVVESDASNSGALQ 335
            + Y        D+       
Sbjct: 204 AEDYLDD----EDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  127 bits (321), Expect = 9e-34
 Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 22/202 (10%)

Query: 148 TSLHVSAMAGHLDIVKELL--EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
             +  +          EL   E              T      SKG   +       +  
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDII---YITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEA 263
                      PLH AA +G ++ + E L        +      G T L+        + 
Sbjct: 71  ------ESIDNPLHEAAKRGNLSWLRECLD---NRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 264 VKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
           V+ L    NI    N  +  G+T LH A       +V  LL  G   +  N +   A D+
Sbjct: 122 VEMLFTQPNIEL--NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

Query: 324 VESDASNSGALQIVPALEEAGA 345
               A+N+    ++   +   A
Sbjct: 180 ----ATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  115 bits (291), Expect = 1e-29
 Identities = 41/217 (18%), Positives = 88/217 (40%), Gaps = 20/217 (9%)

Query: 14  LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVA 73
           +F  +   + +    L  ++   I  T     +T        G   L           VA
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMS--DTNWWKGTSKGRTGLIPSN------YVA 67

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
            + E ++ PLHEA + G L++++  +   +    +  L++   + LY AC  G  D+ + 
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 132 LLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSC 188
           L    ++ + + + L  T+LH +A  G+ DIV+ LL   AR +    +++       ++ 
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD---LRNIEKKLAFDMAT 181

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG 225
           +     + ++    D    +L + E       + ++ 
Sbjct: 182 NAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEH 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (362), Expect = 3e-39
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 19/223 (8%)

Query: 80  ETPLHEACREGRLNFVKLFV---GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY- 135
             PLH+AC E     V+  +         + + ++D    L+ +      ++   LL+  
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSL---LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 136 ---SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAW-KKDLNGHTPLHLSCSKG 191
              +     +  G T   H++   G+L++VK L +   +    K    G T LHL+  K 
Sbjct: 60  ENVNLDDYPDDSGWT-PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV 251
             E+++ L++    +    D   + PLH AA  G + +I+ +  L   +   +   G T 
Sbjct: 119 WFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

Query: 252 LHLTVKNNQYEAVKYLMETL--NITKLANMPDNDGNTILHLAT 292
           L   +     +A   L+E          ++ DN G     +A 
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEY----DLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (295), Expect = 4e-30
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)

Query: 180 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS--LN 237
            + PLH +C +      +ELL   P L    D +GR PLHW+       I   +LS   N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 238 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL---NITKLANMPDNDGNTILHLATAG 294
           +   +     G T  H+       E VK L +     ++    N   N G T LHLA   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL----NKITNQGVTCLHLAVGK 117

Query: 295 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           K   +  +L++ G  V   ++     L      A++ G+L+++  L   G 
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHR----AASVGSLKLIELLCGLGK 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 49/184 (26%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKM---ETPLHEACREGRLNFVKLFV--GI 101
           T  H+    G+ E+  + L     +    N+      T LH A  +      +  +  G 
Sbjct: 74  TPFHIACSVGNLEVV-KSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

Query: 102 DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDI 161
              +     +D            +                        LH +A  G L +
Sbjct: 132 SVRI-----KDKF---------NQ----------------------IPLHRAASVGSLKL 155

Query: 162 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRTPL 218
           ++ L    +     +D  G TPL  + ++GH +    L++    + DL    DN+G    
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV---DNKGAKAE 212

Query: 219 HWAA 222
             A 
Sbjct: 213 DVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
           T LHL       E++  +++     V  +++  + PLH A   G L  ++L  G+  S +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167

Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVD--GLTTSLHVSAMAGHLDIVKE 164
              ++   + L+ A   G  D A  L+         VD  G   +  V   A +  + K 
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDV---ALNEQVKKF 223

Query: 165 LLE 167
            L 
Sbjct: 224 FLN 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  142 bits (361), Expect = 1e-38
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 44/284 (15%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMV---AAENEKM-ETPLHEACREGRLNFVKLFV-- 99
           ++  +      +  L    L      +   A +N    E PLH+A        VK+ +  
Sbjct: 32  HSASYYAIADNNVRLV-CTL------LNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84

Query: 100 GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGH 158
           G+D     + +    + LY A + G +   K  +     L+     G  TS + + M   
Sbjct: 85  GLD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 159 LDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 216
           + IV   L                 + +H++   GH+++   LL      ++  ++    
Sbjct: 142 VSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFI 196

Query: 217 P-LHWAAIKGRINIIDEILSLNLQSAEMRTIHG---ETVLHLTVKNNQYEAVKYLMETLN 272
           P +  A     I ++  +             +     +     V  +  E  K +     
Sbjct: 197 PDIKLAIDNKDIEMLQALFK-----------YDINIYSANLENVLLDDAEIAKMI----- 240

Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
           I K      +     L +    KL  ++    +L +      +K
Sbjct: 241 IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  137 bits (348), Expect = 8e-37
 Identities = 31/251 (12%), Positives = 73/251 (29%), Gaps = 33/251 (13%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-S 136
            +  + A  +  +  V   +  G   ++      +NE  L+ A       + K LL    
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSGL 86

Query: 137 SLLILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNG-HTPLHLSCSKGHL 193
                +  G T +L+ +  +G++  VK  ++   R          G  T  + +     +
Sbjct: 87  DDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKKNWRLM---FYGKTGWKTSFYHAVMLNDV 142

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGET- 250
            I    L   P           + +H     G ++++  +L                   
Sbjct: 143 SIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLD---YMTSTNTNNSLLFIP 197

Query: 251 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 310
            + L + N   E ++ L          N       +            +   +++  V+ 
Sbjct: 198 DIKLAIDNKDIEMLQAL-----FKYDIN-----IYSANLENVLLDDAEIAKMIIEKHVEY 247

Query: 311 NAINRKGYTAL 321
            + +      +
Sbjct: 248 KSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  133 bits (338), Expect = 2e-35
 Identities = 45/271 (16%), Positives = 93/271 (34%), Gaps = 34/271 (12%)

Query: 81  TPLHEACREGRLNFVKLFV-GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
                     +   +K F+   D    +K +    S  Y A     + +   LLN  +L 
Sbjct: 3   DLSRINT--WKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL- 56

Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
              ++     LH +A      IVK LL          + D  G+T L+ +   G+++  +
Sbjct: 57  KNLLENEF-PLHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNMQTVK 112

Query: 198 ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK 257
             +K +  L        +T  + A +   ++I+     L+   +        + +H+T+K
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV-SYF-LSEIPSTFDLAILLSCIHITIK 170

Query: 258 NNQYEAVKYLMETLNITKLA--NMPDNDGNT-ILHLATAGKLTTMVIYLLKLGVDVNAIN 314
           N   + +  L     +  +   N  ++      + LA   K   M+  L K  +++ + N
Sbjct: 171 NGHVDMMILL-----LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225

Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGA 345
                       +       +I   + E   
Sbjct: 226 L-----------ENVLLDDAEIAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.6 bits (192), Expect = 6e-16
 Identities = 15/197 (7%), Positives = 49/197 (24%), Gaps = 54/197 (27%)

Query: 45  LNTILHLTARFGHEELASEILKLCPEMVAAENEKM---ETPLHEACREGRLNFVKLFV-- 99
             T  +         + S  L             +    + +H   + G ++ + L +  
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLS-----EIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 100 GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHL 159
               +       ++                                    + ++     +
Sbjct: 184 MTSTNT-----NNS------------------------------LLFIPDIKLAIDNKDI 208

Query: 160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 219
           ++++ L +         D+N ++    +      EI + +++   +  S         + 
Sbjct: 209 EMLQALFK--------YDINIYSANLENVLLDDAEIAKMIIEKHVEYKS-DSYTKDLDIV 259

Query: 220 WAAIKGRINIIDEILSL 236
                  I   ++ L L
Sbjct: 260 KNNKLDEIISKNKELRL 276

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  136 bits (344), Expect = 2e-37
 Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 13/176 (7%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
            S+H  A  G LD +KE L        K D  G TPL  + + G +E  R LL+   D  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVK 265
                E  + L  A+  G  +I+  +L    +     +   +G T L   V+ N  + V+
Sbjct: 64  I-LAKERESALSLASTGGYTDIVGLLLE---RDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 266 YLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
            L     + + A      + G T + LA A     +   +    + +   N     
Sbjct: 120 AL-----LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  125 bits (316), Expect = 1e-33
 Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 180 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ 239
               +H   ++G L+  +E L+   +L + PD  G TPL WA+  G I  +  +L     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---W 58

Query: 240 SA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGK 295
            A   +     E+ L L       + V  L     + +    N+ D +G T L  A  G 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLL-----LERDVDINIYDWNGGTPLLYAVRGN 113

Query: 296 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
               V  LL  G D+      GYT +D+    A   G  ++   +E    
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDL----AVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  116 bits (294), Expect = 1e-30
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 14/161 (8%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
             +H+   +G L+ +K  +    +++ K +    + L  A   G ++  + LL + +   
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA--- 60

Query: 141 LEVDGLT----TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLE 194
            +   L     ++L +++  G+ DIV  LLE           D NG TPL  +    H++
Sbjct: 61  -DPHILAKERESALSLASTGGYTDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGNHVK 116

Query: 195 ITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
               LL    DL++   + G TP+  A   G   +   I +
Sbjct: 117 CVEALLARGADLTT-EADSGYTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (279), Expect = 2e-28
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 21/181 (11%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
           +  +H  A  G  +   E L+    +V   +E+  TPL  A   G +  V+  +  G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD- 61

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
              + L ++ ES L +A   G  D+   LL        ++     +G  T L  +    H
Sbjct: 62  --PHILAKERESALSLASTGGYTDIVGLLLERDV----DINIYDWNG-GTPLLYAVRGNH 114

Query: 159 LDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 216
           +  V+ LL   A       +  +G+TP+ L+ + G+ ++ + +      L    +     
Sbjct: 115 VKCVEALLARGADLT---TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ-SNLVPAD 170

Query: 217 P 217
           P
Sbjct: 171 P 171

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  137 bits (348), Expect = 2e-37
 Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 18/231 (7%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEK---METPLHEACREGRLNFVKLFV--G 100
           ++ LHL      + L  E+++     +A  N +    +TPLH A    +    +  +  G
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 101 IDPSVIYKLNRDNESVLYVACERGRLDVAKQLL----NYSSLLILEV---DGLTTSLHVS 153
            DP      +    + L++ACE+G L     L           IL+    +G  T LH++
Sbjct: 69  CDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH-TCLHLA 124

Query: 154 AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE 213
           ++ G+L IV+ L+    +   ++  NG T LHL+    + ++   LLK   D++ +   +
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQ 183

Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 264
           G +P      +    I  ++  L L++ +M     E       ++   E  
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQM-LPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  125 bits (317), Expect = 4e-33
 Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 148 TSLHVSAMAGHLDIVKELLE---ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP 204
           + LH++ +     +  E++        F   ++    TPLHL+      EI   LL    
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILS-----LNLQSAEMRTIHGETVLHLTVKNN 259
           D   L D  G TPLH A  +G +  +  +             +    +G T LHL   + 
Sbjct: 70  DPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 260 QYEAVKYLMETLNITKLA--NMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
               V+ L     ++  A  N  +  +G T LHLA   +   +V  LLK G DVN +  +
Sbjct: 129 YLGIVELL-----VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 317 GYTALDVVESDASNSGALQIVPALEEAGA 345
           GY+   +         + +I   L +   
Sbjct: 184 GYSPYQL----TWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  125 bits (317), Expect = 5e-33
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 31/233 (13%)

Query: 108 KLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV--------DGLTTSLHVSAMAGHL 159
           +L  D +S L++A       +  +++     +  ++           T  LH++ +    
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNNLQQT-PLHLAVITNQP 58

Query: 160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP-----DNEG 214
           +I + LL A  +    +D  G+TPLHL+C +G L     L +              +  G
Sbjct: 59  EIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 215 RTPLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 270
            T LH A+I G + I++ ++S    +N Q       +G T LHL V     + V  L++ 
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQE----PCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 271 -LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 322
             ++    N     G +   L      T +   L +L ++   +  +      
Sbjct: 174 GADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  121 bits (307), Expect = 1e-31
 Identities = 45/232 (19%), Positives = 76/232 (32%), Gaps = 22/232 (9%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFVGIDPSV---IYKLNRDNESVLYVACERGRLDVAK 130
              E  ++ LH A            +         +   N   ++ L++A    + ++A+
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 131 QLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPL 184
            LL       + +  G  T LH++   G L  V  L ++         L      GHT L
Sbjct: 63  ALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 185 HLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--E 242
           HL+   G+L I   L+ L  D+++     GRT LH A      +++  +L      A   
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVN 178

Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLAT 292
             T  G +   LT         + L                 +        T
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQL-----GQLTLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  102 bits (257), Expect = 6e-25
 Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T LHL       E+A E L          + +  TPLH AC +G L  V +       P 
Sbjct: 47  TPLHLAVITNQPEIA-EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 105 VIYKLN---RDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT--TSLHVSAMAGHL 159
           +   L     +  + L++A   G L + + L++  +  +   +     T+LH++    + 
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNP 164

Query: 160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 219
           D+V  LL+   +   +    G++P  L+  +    I ++L +L  +       E      
Sbjct: 165 DLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESEDEES 222

Query: 220 WAAIKGRINII-DE 232
           +           DE
Sbjct: 223 YDTESEFTEFTEDE 236

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLL 304
            G++ LHL + + +      ++  +    LA  N  +N   T LHLA       +   LL
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65

Query: 305 KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
             G D    + +G T L +    A   G L  V  L ++  
Sbjct: 66  GAGCDPELRDFRGNTPLHL----ACEQGCLASVGVLTQSCT 102

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  130 bits (331), Expect = 5e-35
 Identities = 49/205 (23%), Positives = 74/205 (36%), Gaps = 23/205 (11%)

Query: 148 TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK---L 202
           T+LH++A     D  K LLE  A       +D  G TPLH + S     + + L++    
Sbjct: 27  TALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83

Query: 203 DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE 262
           D D      ++G TPL  AA      ++ E L  +          G++ LH     N  +
Sbjct: 84  DLDAR---MHDGTTPLILAARLAVEGML-EDLINSHADVNAVDDLGKSALHWAAAVNNVD 139

Query: 263 AVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTA 320
           A   L     +   A  +M +N   T L LA           LL    + +  +      
Sbjct: 140 AAVVL-----LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 194

Query: 321 LDVVESDASNSGALQIVPALEEAGA 345
            D+    A       IV  L+E   
Sbjct: 195 RDI----AQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 2e-33
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 15/220 (6%)

Query: 56  GHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDN 113
               + S+ +     +    +   ET LH A R  R +  K  +    D       +   
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMG 58

Query: 114 ESVLYVACERGRLDVAKQLLNYSSLLILEVD--GLTTSLHVSAMAGHLDIVKELLE--AR 169
            + L+ A       V + L+   +  +      G TT L ++A      ++++L+   A 
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVEGMLEDLINSHAD 117

Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI 229
                  D  G + LH + +  +++    LLK   +     +N   TPL  AA +G    
Sbjct: 118 VN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYET 173

Query: 230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
             ++L  +  + ++          +  +   ++ V+ L E
Sbjct: 174 A-KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (311), Expect = 2e-32
 Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 12/192 (6%)

Query: 156 AGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 215
                ++ + +        + D  G T LHL+      +  + LL+   D +   DN GR
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGR 59

Query: 216 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 275
           TPLH A       +   ++       + R   G T L L  +      ++ L     I  
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL-----INS 114

Query: 276 LA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
            A  N  D+ G + LH A A       + LLK G + +  N +  T L +    A+  G+
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL----AAREGS 170

Query: 334 LQIVPALEEAGA 345
            +    L +  A
Sbjct: 171 YETAKVLLDHFA 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  105 bits (265), Expect = 5e-26
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 18/196 (9%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
            T LHL AR+   + A + L         ++    TPLH A         ++ +    + 
Sbjct: 26  ETALHLAARYSRSDAA-KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLD 160
           +     D  + L +A       + + L+N  +    +V      G + +LH +A   ++D
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHA----DVNAVDDLGKS-ALHWAAAVNNVD 139

Query: 161 IVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 218
               LL+  A ++    ++    TPL L+  +G  E  + LL    +     D+  R P 
Sbjct: 140 AAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPR 195

Query: 219 HWAAIKGRINIIDEIL 234
             A  +   +I+  +L
Sbjct: 196 DIAQERMHHDIV-RLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 81.7 bits (203), Expect = 8e-18
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 20/164 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH       + +   +++     + A      TPL  A R      ++  +    D 
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD- 117

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
             +  ++   +S L+ A     +D A  LL   +              T  L ++A  G 
Sbjct: 118 --VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREET-PLFLAAREGS 170

Query: 159 LDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL 200
            +  K LL+  A ++     D     P  ++  + H +I R L 
Sbjct: 171 YETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.0 bits (126), Expect = 9e-08
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            + LH  A   + + A  +L         +N + ETPL  A REG     K+ +    + 
Sbjct: 126 KSALHWAAAVNNVDAA-VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN- 183

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
                 +  +     +A ER   D+ + L  Y
Sbjct: 184 --RDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  134 bits (338), Expect = 1e-34
 Identities = 53/379 (13%), Positives = 113/379 (29%), Gaps = 55/379 (14%)

Query: 2   EIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELA 61
           ++  I   +  +LF+  +  +  + ++L  ++   I      ++  +  L   +      
Sbjct: 17  QLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR 76

Query: 62  SEILKLCPEMVAAENEKMETPLHEACREG---RLNFVKLFVGIDPSVIYKLNRDNESVLY 118
           +            +  K E     A   G    L+ + L +  D  ++  +  +N     
Sbjct: 77  NAKQLWSD--AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVIQAENYQAFR 133

Query: 119 VACERGRLDVAKQLLNYSSLL---ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
           +A E G L V  +L   +      +++ +    +  ++A  GHL ++  L E     A  
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATA 192

Query: 176 -KDLNGHTPLHLSCS-KGHLEITRELLKLDPDLSSLPDN--------------------- 212
                 +     +   +GH  +   LL     L+    +                     
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252

Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ---YEAVKYLME 269
           E       +   G  +++ +   L           G  +L   ++ N     + +++L+ 
Sbjct: 253 EMHDAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLS 302

Query: 270 TLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 327
              I  LA       D N +L LA           LL +   +       Y         
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYI------- 355

Query: 328 ASNSGALQIVPALEEAGAR 346
               G L +     E    
Sbjct: 356 NETGGRLDLRAVALEHHHH 374

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  126 bits (318), Expect = 8e-34
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD 203
           + +   +      G+   V+  L+  +    + D +G +PLH +C +G   +   L+   
Sbjct: 4   EFMD-DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 204 PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQY 261
             ++   +    TPLH AA  G  +I+ ++L      A++     HG   LH      Q 
Sbjct: 63  ARINV-MNRGDDTPLHLAASHGHRDIVQKLLQ---YKADINAVNEHGNVPLHYACFWGQD 118

Query: 262 EAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
           +  + L     +   A  ++ +  G   +  A A     +     K+G ++N I  K   
Sbjct: 119 QVAEDL-----VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK--- 170

Query: 320 ALDVVESDASNSGALQ 335
                  D    G  +
Sbjct: 171 -------DTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (303), Expect = 9e-32
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 16/171 (9%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
                +   C +G+    R  L    +  +  D+ G +PLHWA  +GR  +++ ++    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--- 60

Query: 239 QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 294
           + A   +     +T LHL   +   + V+ L     +   A  N  +  GN  LH A   
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKL-----LQYKADINAVNEHGNVPLHYACFW 115

Query: 295 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
               +   L+  G  V+  N+ G   +D     A       +    E+ G 
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDK----AKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  112 bits (282), Expect = 8e-29
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
             +   CREG    V+L++    + + + +    S L+ AC  GR  V + L+   +   
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA--- 63

Query: 141 LEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHL 193
             +        T  LH++A  GH DIV++LL+  A        + +G+ PLH +C  G  
Sbjct: 64  -RINVMNRGDDT-PLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQD 118

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           ++  +L+     +S   +  G  P+  A    R  +  E  
Sbjct: 119 QVAEDLVANGALVSI-CNKYGEMPVDKAKAPLRELLR-ERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (261), Expect = 4e-26
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              +    R G+       L      +   ++   +PLH ACREGR   V++ +  G   
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR- 64

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIV 162
             I  +NR +++ L++A   G  D+ ++LL Y + +  +   G    LH +   G   + 
Sbjct: 65  --INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQDQVA 121

Query: 163 KELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
           ++L+   A        +  G  P+  + +     +     K+  +L        R P   
Sbjct: 122 EDLVANGALVS---ICNKYGEMPVDKAKAPLRELLRERAEKMGQNL-------NRIPYKD 171

Query: 221 AAIKGR 226
              KG 
Sbjct: 172 TFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.4 bits (236), Expect = 1e-22
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 211 DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 270
             E    +     +G    +   L            HG + LH   +  +   V+ L   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML--- 58

Query: 271 LNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 328
             I + A  N+ +   +T LHLA +     +V  LL+   D+NA+N  G   L      A
Sbjct: 59  --IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL----HYA 112

Query: 329 SNSGALQIVPALEEAGA 345
              G  Q+   L   GA
Sbjct: 113 CFWGQDQVAEDLVANGA 129

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  102 bits (257), Expect = 5e-25
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 180 GHTPLHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS- 235
             +PL L+  +  ++   +LLK    +          G T LH AA+   +     ++  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQR---GAMGETALHIAALYDNLEAAMVLMEA 59

Query: 236 ---LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME----------TLNITKLANMPDN 282
              L  +        G+T LH+ V N     V+ L+                   +    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 283 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
            G   L  A       +V  L++ G D+ A +  G T L
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 19/147 (12%)

Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LN 272
             +PL  AA +  +  + ++L         R   GET LH+    +  EA   LME    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 273 I-TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK-------------GY 318
           +  +       +G T LH+A   +   +V  LL  G  V+A                 G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 319 TALDVVESDASNSGALQIVPALEEAGA 345
             L    S A+  G+ +IV  L E GA
Sbjct: 123 HPL----SFAACVGSEEIVRLLIEHGA 145

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 246 IHGETVLHLTVKNNQYEAV-KYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIY 302
           +  E+ L L  K N  +A+ K L       +    +     G T LH+A         + 
Sbjct: 1   MIWESPLLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALYDNLEAAMV 55

Query: 303 LLKLGVDV-----NAINRKGYTALDVVESDASNSGALQIVPALEEAGA----RRCDQLPP 353
           L++   ++      +   +G TAL +    A  +  + +V AL   GA    R    +  
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHI----AVINQNVNLVRALLARGASVSARATGSVFH 111

Query: 354 MSPHDIQPIGDT 365
             PH++   G+ 
Sbjct: 112 YRPHNLIYYGEH 123

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 22/105 (20%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVA------AENEKMETPLHEACREGRLNFVKLFV 99
              L   A  G EE+   +L      +       A++    T LH    +    F     
Sbjct: 122 EHPLSFAACVGSEEIV-RLL------IEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 100 ------GIDP---SVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
                        S+    N    +   +A   G + + + L+  
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (313), Expect = 3e-33
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
                +H   ++G +      ++ +  ++   D EG TPL WAA  G+I +++ +L    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQ--- 57

Query: 239 QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 294
             A  ++     E+ L L       + VK L     +      N  D +G T L  A  G
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKML-----LDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 295 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
                V  LL+ G D       GY ++D+    A   G   +   +E    
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDL----AVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  121 bits (307), Expect = 2e-32
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 18/171 (10%)

Query: 148 TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
            S+H  A  G +  +   +E           D  G TPL  + + G + +   LL+   D
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEA 263
              L      + L  A  KG  +I+  +L              +G T L   V  N  + 
Sbjct: 62  PQLL-GKGRESALSLACSKGYTDIVKMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKC 117

Query: 264 VKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
           VK L     +   A   +  + G   + LA A    ++   +    + +  
Sbjct: 118 VKML-----LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  109 bits (276), Expect = 4e-28
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
              +H+   +G + ++   +        I   + +  + L  A   G++ V + LL   +
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 138 LLILEVDGLT----TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKG 191
               +   L     ++L ++   G+ DIVK LL+         + D NG TPL  +    
Sbjct: 61  ----DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN---EYDWNGGTPLLYAVHGN 113

Query: 192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
           H++  + LL+   D +    + G   +  A   G  ++   I S
Sbjct: 114 HVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 44/159 (27%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T L   A  G   +   +L+   +      +  E+ L  AC +G  + VK+ +  G+D +
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
                  D                               +G  T L  +    H+  VK 
Sbjct: 97  E-----YDW------------------------------NG-GTPLLYAVHGNHVKCVKM 120

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           LLE  A       +  +G+  + L+ + G+  + + +  
Sbjct: 121 LLESGADPT---IETDSGYNSMDLAVALGYRSVQQVIES 156

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (310), Expect = 2e-32
 Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 21/200 (10%)

Query: 147 TTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP 204
              L  +       + + L +   + +   + D  G+TPL+++     +EI + L+    
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 264
           D++   ++   +P  +A  +GR  I+  +L            +G   L    +    + V
Sbjct: 64  DINL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 265 KYLME--TLNITKLANMPDNDGNTILHLATAGKLTT-----MVIYLLKLGVDVNAINRKG 317
           K L+E    +I    +  ++ G T L  A   +        +V  L++ G D +  +  G
Sbjct: 123 KLLLEDGREDI----DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178

Query: 318 YTALDVVESDASNSGALQIV 337
            TA+D     A+  G  +I 
Sbjct: 179 RTAMDY----ANQKGYTEIS 194

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  113 bits (285), Expect = 5e-29
 Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 16/198 (8%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
             +L    +   +++  EIL+     V   + +  TPL+ A     +   K  +  G D 
Sbjct: 7   GALLEAANQRDTKKVK-EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD- 64

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVD--GLTTSLHVSAMAGHLDI 161
             I   N  ++S    A  +GR ++   +L +++  + + +  G   +L  +A  GH+D 
Sbjct: 65  --INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG-GNALIPAAEKGHIDN 121

Query: 162 VKELLEARQEFAWKKDLNGHTPLHL-----SCSKGHLEITRELLKLDPDLSSLPDNEGRT 216
           VK LLE  +E    ++  G+T L         ++ + +I + L++   D S + DN GRT
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS-IKDNSGRT 180

Query: 217 PLHWAAIKGRINIIDEIL 234
            + +A  KG   I  +IL
Sbjct: 181 AMDYANQKGYTEIS-KIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (269), Expect = 8e-27
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
           K       L  +  +   ++   L      +  + D EG TPL+ A     I I   ++ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALID 60

Query: 236 LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET--LNITKLANMPDNDGNTILHLA 291
              + A   ++    ++         + E + Y+++    ++    N  +  G   L  A
Sbjct: 61  ---RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL----NKHNRYGGNALIPA 113

Query: 292 TAGKLTTMVIYLLKLG-VDVNAINRKGYTALDV-VESDASNSGALQIVPALEEAGA 345
                   V  LL+ G  D++  N  GYTAL   V     N     IV  L E GA
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  106 bits (267), Expect = 1e-26
 Identities = 43/212 (20%), Positives = 81/212 (38%), Gaps = 31/212 (14%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKE 164
             +  ++L  A +R    V + L + +     +V     +G  T L+++     ++I K 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTY----QVDEVDTEG-NTPLNIAVHNNDIEIAKA 57

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLH 219
           L++  A       ++    +P   + ++G  EI   +LK    D +     +  G   L 
Sbjct: 58  LIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH---NRYGGNALI 111

Query: 220 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL-----TVKNNQYEAVKYLMET-LNI 273
            AA KG I+ +  +L    +  + +   G T L              + VK LME   + 
Sbjct: 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ 171

Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLK 305
               ++ DN G T +  A     T +   L +
Sbjct: 172 ----SIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (266), Expect = 2e-26
 Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 41/216 (18%)

Query: 76  NEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
             ++   L  A +       ++          + +++ +  + L +A     +++AK L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ---VDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 134 ----------NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTP 183
                     + S           +    +   G  +I+  +L+       K +  G   
Sbjct: 60  DRGADINLQNSISD----------SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109

Query: 184 LHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAI-----KGRINIIDEILS 235
           L  +  KGH++  + LL+    D D     ++ G T L  A       +   +I+  ++ 
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQ---NDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 236 LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
                A   ++   G T +    +    E  K L +
Sbjct: 167 ---NGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.1 bits (165), Expect = 6e-13
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVI 301
           M+T     +L    + +  +  + L +T   +    +  D +GNT L++A       +  
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQV----DEVDTEGNTPLNIAVHNNDIEIAK 56

Query: 302 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            L+  G D+N  N    +        A   G  +I+  + +   
Sbjct: 57  ALIDRGADINLQNSISDSPY----LYAGAQGRTEILAYMLKHAT 96

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 7e-06
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEAC-----REGRLNFVKLFV- 99
              L   A  GH +    +L+   E +  +N+   T L EA       +   + VKL + 
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 100 -GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS 136
            G D       +    + +  A ++G  +++K L  Y+
Sbjct: 167 NGAD---QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  123 bits (312), Expect = 2e-32
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 15/185 (8%)

Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITREL 199
           E+ G   SL             E +    R +F    +      L  S  +G  ++ + +
Sbjct: 2   EITGQV-SLPPGKRTNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRI 56

Query: 200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVK 257
           +    D S  P++EG T LH A   G   I+  ++        +      G T LH    
Sbjct: 57  IYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQ---FGVNVNAADSDGWTPLHCAAS 112

Query: 258 NNQYEAVKYLMETL-NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
            N  +  K+L+E+   +       D               T    +L  +   +  +N+ 
Sbjct: 113 CNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 171

Query: 317 GYTAL 321
              AL
Sbjct: 172 VIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (278), Expect = 9e-28
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 32/232 (13%)

Query: 80  ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL------ 133
           +  L    R          +     V  K N    ++L  +   G  D+ ++++      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKG 191
           +  +      +G+T +LH +  AGH +IVK L++           D +G TPLH + S  
Sbjct: 64  SLPN-----DEGIT-ALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCN 114

Query: 192 HLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
           ++++ + L++        +  D +          +G      + L    +   +      
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS-QFLYGVQEKMGIMNKGVI 173

Query: 250 TVLHLTVKNNQYEAVKYLMETLNITK----------LANMPDNDGNTILHLA 291
             L      N  E      + + I             A + D +G    +L 
Sbjct: 174 YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (276), Expect = 2e-27
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 177 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
           ++ G   L         +   E +     +    +      L  ++++G  +++  I+  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY- 58

Query: 237 NLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHLAT 292
             +     +    G T LH  V     E VK+L     +    N+   D+DG T LH A 
Sbjct: 59  --EVDDPSLPNDEGITALHNAVCAGHTEIVKFL-----VQFGVNVNAADSDGWTPLHCAA 111

Query: 293 AGKLTTMVIYLLKLGVDVNAINRK-GYTALDVVESDASNSGALQIVPALEEAGA 345
           +     +  +L++ G  V A+      TA D  E      G  Q    L     
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  109 bits (275), Expect = 2e-27
 Identities = 31/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%)

Query: 112 DNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--AR 169
             +  L             + + +   +      L   L  S++ G  D+V+ ++     
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPL-ALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI 229
                  +  G T LH +   GH EI + L++   ++++  D++G TPLH AA    + +
Sbjct: 63  PS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQV 118

Query: 230 IDEILSL--NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGN 285
              ++     + +     +         ++    +  ++L           M   +    
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-----YGVQEKMGIMNKGVI 173

Query: 286 TILHLATAGKLTTMVIYLLKLGVDVNAINRKGY 318
             L          +    +K G  +  I+R+  
Sbjct: 174 YALWDYEPQNDDEL---PMKEGDCMTIIHREDE 203

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 92.3 bits (230), Expect = 3e-21
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 25/216 (11%)

Query: 29  LIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR 88
            I     ++K         +L  ++  G  +L   I+    +  +  N++  T LH A  
Sbjct: 24  RIAHG-MRVKFNPLPL--ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC 79

Query: 89  EGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL--ILEVD 144
            G    VK  V  G++   +   + D  + L+ A     + V K L+   + +  +   D
Sbjct: 80  AGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD 136

Query: 145 GLT-TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE----- 198
             T          G+    + L   +++     +      L     +   E+  +     
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMG-IMNKGVIYALWDYEPQNDDELPMKEGDCM 195

Query: 199 --LLKLDPD-----LSSLPDNEGRTPLHWAAIKGRI 227
             + + D D      + L D EG  P +   +  RI
Sbjct: 196 TIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 231

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 91.9 bits (229), Expect = 3e-21
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 210 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLM 268
           P+  G+  L             E ++       ++       +L  +    +++ V+ + 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIA---HGMRVKFNPLPLALLLDSSLEGEFDLVQRI- 56

Query: 269 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
               I ++   ++P+++G T LH A     T +V +L++ GV+VNA +  G+T L     
Sbjct: 57  ----IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC--- 109

Query: 327 DASNSGALQIVPALEEAGA 345
            A++   +Q+   L E+GA
Sbjct: 110 -AASCNNVQVCKFLVESGA 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  120 bits (304), Expect = 1e-31
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 24/194 (12%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
               +         +  L          +D    TPL ++C  G      +L++    L 
Sbjct: 10  IVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENFDKLE 62

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVK 265
              D EG T L WA    R+ I +++LS   + +    +   G+T L  ++     E   
Sbjct: 63  D-KDIEGSTALIWAVKNNRLGIAEKLLS---KGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118

Query: 266 YLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
           +L     +   A  N  + +G T L +A+    + +V  LL+LG D++A +  G TA   
Sbjct: 119 FL-----LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173

Query: 324 VESDASNSGALQIV 337
               A   G  +++
Sbjct: 174 ----ARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  111 bits (280), Expect = 2e-28
 Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 24/202 (11%)

Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE- 167
           ++++ E V  +  E+        L NY           T  L V+ M G  + + +L+E 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNYRD-----SYNRT-PLMVACMLGMENAIDKLVEN 57

Query: 168 -ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR 226
             + E    KD+ G T L  +     L I  +LL    ++++  D  G+TPL W+ I G 
Sbjct: 58  FDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLMWSIIFGY 113

Query: 227 INIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDN 282
             +   +L      A    R + GET L +  K  + E VK L     +   A++   D 
Sbjct: 114 SEMSYFLLE---HGANVNDRNLEGETPLIVASKYGRSEIVKKL-----LELGADISARDL 165

Query: 283 DGNTILHLATAGKLTTMVIYLL 304
            G T    A       ++    
Sbjct: 166 TGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (274), Expect = 1e-27
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 29/198 (14%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
             +  +       +   + L+         +    TPL  AC  G  N +   V      
Sbjct: 9   EIVEKIKDEKSINQNL-DFLR------NYRDSYNRTPLMVACMLGMENAIDKLVENFDK- 60

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
             +   + +  + L  A +  RL +A++LL+  S     V      G T  L  S + G+
Sbjct: 61  --LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS----NVNTKDFSGKT-PLMWSIIFGY 113

Query: 159 LDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 216
            ++   LLE  A       ++L G TPL ++   G  EI ++LL+L  D+S+  D  G T
Sbjct: 114 SEMSYFLLEHGANVN---DRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGLT 169

Query: 217 PLHWAAIKGRINIIDEIL 234
               A I GR  +I +I 
Sbjct: 170 AEASARIFGRQEVI-KIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.0 bits (248), Expect = 4e-24
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
            D NG     +   K   +   + L+      +  D+  RTPL  A + G  N ID+++ 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNL-DFLR------NYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 236 LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLAT 292
                   E + I G T L   VKNN+    + L+    N+    N  D  G T L  + 
Sbjct: 57  ---NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV----NTKDFSGKTPLMWSI 109

Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
               + M  +LL+ G +VN  N +G T L      AS  G  +IV  L E GA
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPL----IVASKYGRSEIVKKLLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.8 bits (206), Expect = 2e-18
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 27/167 (16%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T L +    G E    + L    + +  ++ +  T L  A +  RL   +  +  G + 
Sbjct: 36  RTPLMVACMLGMENAI-DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN- 93

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL--------EVDGLTTSLHVSAM 155
             +   +   ++ L  +   G  +++         L+          ++G T  L V++ 
Sbjct: 94  --VNTKDFSGKTPLMWSIIFGYSEMSY-------FLLEHGANVNDRNLEGET-PLIVASK 143

Query: 156 AGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL 200
            G  +IVK+LLE  A       +DL G T    +   G  E+ +   
Sbjct: 144 YGRSEIVKKLLELGADIS---ARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 30/138 (21%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAE-NEKM---ETPLHEACREGRLNFVKLFV-- 99
           +T L    +     +A E L        +  N K    +TPL  +   G        +  
Sbjct: 69  STALIWAVKNNRLGIA-EKLLS----KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123

Query: 100 GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL--------EVDGLTTSLH 151
           G +   +   N + E+ L VA + GR ++ K        L+         ++ GLT +  
Sbjct: 124 GAN---VNDRNLEGETPLIVASKYGRSEIVK-------KLLELGADISARDLTGLT-AEA 172

Query: 152 VSAMAGHLDIVKELLEAR 169
            + + G  +++K   E R
Sbjct: 173 SARIFGRQEVIKIFTEVR 190

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  121 bits (307), Expect = 1e-31
 Identities = 40/251 (15%), Positives = 71/251 (28%), Gaps = 23/251 (9%)

Query: 71  MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAK 130
           + +    +         ++G          I   V      + E+  + A  +       
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 62

Query: 131 QLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK 190
           QLL    +  ++ +G  T+L   A  G    V+ L EA  +   +    G T LH++   
Sbjct: 63  QLLEDRDVDAVDENG-RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 191 GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 250
              E+   L++L  D+    D  G T L  A    +       +             G  
Sbjct: 122 VRPEVVEALVELGADIEV-EDERGLTALELAREILKTTPKGNPMQ-----------FGRR 169

Query: 251 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 310
           +    V N     V    E   I          G  + +L                  + 
Sbjct: 170 IGLEKVINVLEGQVFEYAEVDEI----VEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED 225

Query: 311 NAINRKGYTAL 321
            A + +    L
Sbjct: 226 VAKDYE--DGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (287), Expect = 7e-29
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 32/251 (12%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV-GIDPSV 105
               +  + GH         +     A    + ETP   A R+     +   +   D   
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKADEQALSQLLEDRD--- 69

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
           +  ++ +  + L      G     + L    + L   ++ G  T+LH++A     ++V+ 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA 222
           L+E  A  E    +D  G T L L+            ++    +      E    +    
Sbjct: 130 LVELGADIE---VEDERGLTALELAREILKTTPKGNPMQFGRRI----GLEKVINVLEGQ 182

Query: 223 IKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN 282
           +        E+  +  +        G+ V +L    +  +             +A     
Sbjct: 183 VFE----YAEVDEIVEKRG-----KGKDVEYLVRWKDGGDCEWVK-----GVHVAEDVAK 228

Query: 283 DGNTILHLATA 293
           D    L  A A
Sbjct: 229 DYEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  102 bits (257), Expect = 8e-25
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           +    G     +    GH         +  D+     +E  TP   AA K     +   L
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQAL-SQL 64

Query: 235 SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM---PDNDGNTILH 289
              L+    +    +G T L         + V+ L         A++       G T LH
Sbjct: 65  ---LEDRDVDAVDENGRTALLFVAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTALH 116

Query: 290 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 346
           +A       +V  L++LG D+   + +G TAL++    A             + G R
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALEL----AREILKTTPKGNPMQFGRR 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 24/185 (12%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T L   A  G ++    + +   ++   +     T LH A    R   V+  V  G D  
Sbjct: 79  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-- 136

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
            I   +    + L +A E  +       + +   + LE      ++    +  + ++ + 
Sbjct: 137 -IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEI 192

Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE--GRTPLHWAA 222
           +          K   G    +L   K   +          +     D        L +A 
Sbjct: 193 VE---------KRGKGKDVEYLVRWKDGGDCEWVKGVHVAE-----DVAKDYEDGLEYAV 238

Query: 223 IKGRI 227
            +  I
Sbjct: 239 AESVI 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  114 bits (286), Expect = 9e-29
 Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 52/246 (21%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEF-------AWKKDLNGHTPLH---LSCSKGHLEITR 197
             L      G  + +  LLE  +         A+ +   G T L    L+   G      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 198 ELLKLDPDLSSLP----------DNEGRTPLHWAAIKGRINIIDEILS------------ 235
            LL++D D  +              +G + LH A  K  +  +  ++             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 295
              +        GE  L L     Q++ V YL+E  +        D+ GNT+LH      
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 296 LTT----------------MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 339
             +                M   L          N +G T L +    A+  G ++I   
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL----AAKEGKIEIFRH 239

Query: 340 LEEAGA 345
           + +   
Sbjct: 240 ILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  107 bits (270), Expect = 1e-26
 Identities = 50/258 (19%), Positives = 74/258 (28%), Gaps = 60/258 (23%)

Query: 47  TILHLTARFGH-EELASEILKLCPEM------VAAENEKMETPLHEA---CREGRLNFVK 96
             L      G  EEL   +  L             E    +T L +A    ++G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 97  LFVGIDPSVIYKLNRDNESV----------LYVACERGRLDVAKQLL---------NYSS 137
             + ID          N             L++A E+  L   K L+             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 138 LLILEVDGLT----TSLHVSAMAGHLDIVKELLEARQEFA--WKKDLNGHTPLHL----- 186
                           L ++A     D+V  LLE   + A     D  G+T LH      
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 187 -----------SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
                          G L++   L         + +++G TPL  AA +G+I I   IL 
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 236 LNLQSAEMRTIHGETVLH 253
                   R   G    H
Sbjct: 243 --------REFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.4 bits (196), Expect = 8e-17
 Identities = 43/211 (20%), Positives = 62/211 (29%), Gaps = 45/211 (21%)

Query: 180 GHTPLHLSCSKGHLEITRELL-------KLDPDLSSLPDNEGRTPLHWAAI---KGRINI 229
               L    S+G  E    LL       K   D +    + G+T L  A +    G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 230 IDEILS----------LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME---------- 269
           I  +L           L           G + LH+ ++    + VK L+E          
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 270 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV---DVNAINRKGYTAL--DVV 324
                K        G   L LA   K   +V YLL+       + A +  G T L   V+
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 325 ESD----------ASNSGALQIVPALEEAGA 345
            +D              G LQ+   L     
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQ 212

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
           N+ L +    G  ++ + +           N +  TPL  A +EG++   +  +  + S 
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

Query: 106 IYKLNRDN 113
               +  +
Sbjct: 248 AAAHHHHH 255

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  115 bits (290), Expect = 1e-28
 Identities = 48/272 (17%), Positives = 90/272 (33%), Gaps = 22/272 (8%)

Query: 75  ENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLN 134
           +  K+E  L                    +   +    N+   +V+ +    +V     N
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 135 YSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLEARQEFA--WKKDLNGHTPLHLSCSKG 191
               L + VD    T LH      +L++VK L++     +     D  G + L  +    
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSV 175

Query: 192 H---LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN------------IIDEILSL 236
           +         LL        L D+  RT LH   I   +             ++  I+  
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 296
             +  +  T   E+  +      +   ++ L     I  + N  D++G+T L++A     
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 297 TTMVIYLLKLGVDVNAINRKGYTALDV-VESD 327
            ++V  LL  G D    N+ G   +D     +
Sbjct: 296 ISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 84.3 bits (208), Expect = 6e-18
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREG----RLNFVKLFVGI 101
           NT LH      + EL   ++K         +   E+ L +A +         F  L   +
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 102 DPSVIYKLNRDNESVLYVACE----RGRLDVAKQ--------LLNYSSLLILEVDGLTTS 149
            P +I + +  N ++L+         G    AK         ++   +  I        S
Sbjct: 191 YPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249

Query: 150 LHVSAMAGHLDIVKELLEARQEFAW---KKDLNGHTPLHLSCSKGHLEITRELLKLDPDL 206
                     D + E L+ +   A     +D NG T L+++   G++ I   LL    D 
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309

Query: 207 SSLPDNEGRTPLHWAA 222
             + +  G  P+ + A
Sbjct: 310 -FIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 28/204 (13%), Positives = 49/204 (24%), Gaps = 41/204 (20%)

Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
           L   L         ++   L         +   +     H+S      E+         +
Sbjct: 63  LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
           L+   D  G TPLHW      + ++  ++            HG              +  
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVK-----------HG--------------S-- 155

Query: 266 YLMETLNITKLANMPDNDGNTILHLAT----AGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
                 N        DN G + L  A          T    L  L   +   +    T L
Sbjct: 156 ------NR----LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

Query: 322 DVVESDASNSGALQIVPALEEAGA 345
             +   +  +G         +   
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILM 229

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  110 bits (277), Expect = 2e-28
 Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 26/167 (15%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
           +  E     L  A   GR+  V+  +  G +P+     N      + V    G   VA+ 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM-MGSARVAEL 62

Query: 132 LLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPL 184
           LL + +    E        LT  +H +A  G LD +  L    AR +    +D  G  P+
Sbjct: 63  LLLHGA----EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPV 115

Query: 185 HLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 231
            L+   GH ++ R L       ++     G       A +G  +I D
Sbjct: 116 DLAEELGHRDVARYL------RAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.0 bits (240), Expect = 2e-23
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
                L  + ++G +E  R LL+   +P+    P++ GR P+      G   + + +L  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVMM-MGSARVAELLLL- 65

Query: 237 NLQSA--EMRTIHGETV-LHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 291
               A          T  +H   +    + +  L         A  ++ D  G   + LA
Sbjct: 66  --HGAEPNCADPATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVRDAWGRLPVDLA 118

Query: 292 TAGKLTTMVIYLLKLGVDVNAINRKGYTAL----DVVE 325
                  +  YL          N     A     D+ +
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.2 bits (225), Expect = 2e-21
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 26/164 (15%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAGHLDIVKEL 165
              +   L  A  RGR++  + LL   +      +         + V  M G   + + L
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGA----NPNAPNSYGRRPIQV-MMMGSARVAELL 63

Query: 166 LE--ARQEFAWKKDLNGHT-PLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHW 220
           L   A        D    T P+H +  +G L+    L +     D+    D  GR P+  
Sbjct: 64  LLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDL 117

Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 264
           A   G  ++   + +    +       G     +       +  
Sbjct: 118 AEELGHRDVARYLRA---AAGG---TRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.5 bits (153), Expect = 8e-12
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 248 GETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
               L       + E V+ L+E   N     N P++ G   + +   G        LL  
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGANP----NAPNSYGRRPIQVMMMGSARV-AELLLLH 66

Query: 307 GVDVNAINRKGYT-ALDVVESDASNSGALQIVPALEEAGAR 346
           G + N  +    T  +     DA+  G L  +  L  AGAR
Sbjct: 67  GAEPNCADPATLTRPV----HDAAREGFLDTLVVLHRAGAR 103

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 45/151 (29%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
             + +    G   +A  +L    E   A+   +  P+H+A REG L+ + +    G    
Sbjct: 47  RPIQV-MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
           V     RD           GR                        + ++   GH D+ + 
Sbjct: 106 V-----RDAW---------GR----------------------LPVDLAEELGHRDVARY 129

Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
           L  A           G     +  ++G  +I
Sbjct: 130 LRAA------AGGTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 277 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 336
           A          L  A A      V  LL+ G + NA N  G   + V        G+ ++
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV----MMM-GSARV 59

Query: 337 VPALEEAGA 345
              L   GA
Sbjct: 60  AELLLLHGA 68

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  112 bits (281), Expect = 2e-28
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 23/238 (9%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
              + A         +  +          + ++D+ + L+ AC  G  ++ + LL     
Sbjct: 9   MICNLAYSGKLDELKERILADKSL---ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV- 64

Query: 139 LILEV-----DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
               V      G +  LH++A AG  +IVK LL          + NG TPLH + SK   
Sbjct: 65  ---PVNDKDDAGWS-PLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRH 119

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
           EI   LL+   +  +  D+   T +H AA KG + ++  +L     S  ++   G T LH
Sbjct: 120 EIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLH 177

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 311
           L     + E  K+L+          + + +  T L +A  G    +++  L  G + +
Sbjct: 178 LACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGL--GLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  112 bits (281), Expect = 3e-28
 Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 14/201 (6%)

Query: 147 TTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP 204
               +++      ++ + +L   +      + D +  T LH +CS GH EI   LL+L  
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 264
            ++   D+ G +PLH AA  G   I+  +L            +G T LH     N++E  
Sbjct: 65  PVND-KDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 265 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 324
             L+E        +  D+   T +H A A     MV  LL      N  + +G T L + 
Sbjct: 123 VMLLEG---GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL- 178

Query: 325 ESDASNSGALQIVPALEEAGA 345
              A +   ++    L   GA
Sbjct: 179 ---ACDEERVEEAKFLVTQGA 196

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (279), Expect = 5e-28
 Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
            I +L      +EL  E +     +    ++   T LH AC  G    V+  +  G+   
Sbjct: 9   MICNLAYSGKLDELK-ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-- 65

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
            +   +    S L++A   G  ++ K LL   + +        T LH +A     +I   
Sbjct: 66  -VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK 224
           LLE        KD    T +H + +KG+L++   LL      +   D EG TPLH A  +
Sbjct: 125 LLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDE 182

Query: 225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
            R+     +++    S  +     +T L +         +   + 
Sbjct: 183 ERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGL--GLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (278), Expect = 6e-28
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 18/237 (7%)

Query: 112 DNESVLYVACERGRLDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIVKELLE--A 168
            N  +  +A      ++ +++L   SL    + D  T +LH +  AGH +IV+ LL+   
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGV 64

Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN 228
                  KD  G +PLH++ S G  EI + LL     +++  +  G TPLH+AA K R  
Sbjct: 65  PVN---DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHE 120

Query: 229 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
           I   +L     + + +  +  T +H        + V  L+         N+ D +GNT L
Sbjct: 121 IAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPL 176

Query: 289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           HLA   +      +L+  G  +   N++  T L V        G L ++      G 
Sbjct: 177 HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA------KGGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 95.7 bits (238), Expect = 1e-22
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           +  ++     +L+ S    E+   +L      +   D + RT LHWA   G   I++ +L
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLL 60

Query: 235 SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
                      +   G + LH+       E VK L+         N  + +G T LH A 
Sbjct: 61  Q---LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAA 114

Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           +     + + LL+ G + +A +    TA+      A+  G L++V  L    A
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHR----AAAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.2 bits (234), Expect = 6e-22
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
            T LH     GH E+  E L      V  +++   +PLH A   G    VK  +     V
Sbjct: 41  RTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL 165
               N++  + L+ A  + R ++A  LL   +    +     T++H +A  G+L +V  L
Sbjct: 100 NAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

Query: 166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG 225
           L  +      +D  G+TPLHL+C +  +E  + L+     +    + E +TPL  A   G
Sbjct: 159 LFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI-ENKEEKTPLQVAK--G 214

Query: 226 RINIIDEILS 235
            + +I + L+
Sbjct: 215 GLGLILKRLA 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  111 bits (279), Expect = 5e-28
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             L  +A+ G L++V++ ++   + + + +  G T LH +    +  I   L+    +++
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVN 81

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL--TVKNNQYEAVK 265
           S PD+ G TPLH AA      I   ++             G T        +    +   
Sbjct: 82  S-PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
           YL    ++ +   + ++     L    + +    + +     V V   +    T      
Sbjct: 141 YL---ADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWW-- 194

Query: 326 SDASNSGALQIVP 338
             A+  G    VP
Sbjct: 195 --AALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  101 bits (255), Expect = 1e-24
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 162 VKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 219
           ++ +L        A +  LN    L  +   G LE+ ++ +K   D S  P+ EG T LH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALH 59

Query: 220 WAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 277
            A      +I+D +++     A +     HG T LH     N       L     +   A
Sbjct: 60  NAICGANYSIVDFLIT---AGANVNSPDSHGWTPLHCAASCNDTVICMAL-----VQHGA 111

Query: 278 N---MPDNDGNTILHLATAGKLTT--MVIYLLKLGVDVNAINRKGYTAL 321
                  +DG T        +        YL  +   +  +N     AL
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  101 bits (254), Expect = 1e-24
 Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 24/196 (12%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
              L +A   G L  V+  V    DPS   + N +  + L+ A       +   L+   +
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 138 LLILEV-----DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHL--SCSK 190
                V      G  T LH +A      I   L++           +G T         +
Sbjct: 79  ----NVNSPDSHG-WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 191 GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHG 248
           G+ +    L  ++  +    ++     L   + +      DE+     +S  +  R    
Sbjct: 134 GYADCATYLADVEQSMGL-MNSGAVYALWDYSAEF----GDELSFREGESVTVLRRDGPE 188

Query: 249 ETVLHLTVKNNQYEAV 264
           ET       + Q   V
Sbjct: 189 ETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 14/190 (7%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
            +L   A  G  E+  +         +  NE+  T LH A      + V   +  G +  
Sbjct: 23  VLLLDAALTGELEVV-QQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-- 79

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL--TTSLHVSAMA--GHLD 160
            +   +    + L+ A       +   L+ + +  I         T+         G+ D
Sbjct: 80  -VNSPDSHGWTPLHCAASCNDTVICMALVQHGA-AIFATTLSDGATAFEKCDPYREGYAD 137

Query: 161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
               L +  ++     +      L    ++   E+          +    D    T   W
Sbjct: 138 CATYLAD-VEQSMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLR-RDGPEETDWWW 194

Query: 221 AAIKGRINII 230
           AA+ G+   +
Sbjct: 195 AALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLK 305
              +L       + E V+       + ++   + P+ +G T LH A  G   ++V +L+ 
Sbjct: 21  PLVLLLDAALTGELEVVQQA-----VKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75

Query: 306 LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            G +VN+ +  G+T L      A++     I  AL + GA
Sbjct: 76  AGANVNSPDSHGWTPLHC----AASCNDTVICMALVQHGA 111

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 25/179 (13%), Positives = 41/179 (22%), Gaps = 47/179 (26%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVA------AENEKMETPLHEACREGRLNFVKLFVG 100
           T LH      +  +  + L      +       + +    TPLH A            V 
Sbjct: 56  TALHNAICGANYSIV-DFL------ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ 108

Query: 101 IDPSVIYKLNRDNESVLYVA--CERGRLDVAKQLLN------------------YSS--- 137
              ++      D  +          G  D A  L +                  YS+   
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168

Query: 138 --LLILEVDGLT---------TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLH 185
             L   E + +T         T    +A+ G    V             +        H
Sbjct: 169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 2e-27
 Identities = 54/295 (18%), Positives = 86/295 (29%), Gaps = 68/295 (23%)

Query: 3   IEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTV------PGSLNTILH---LTA 53
            +    Y  R +F+ + + + Q   SL+   +   K+        P +  T L    L  
Sbjct: 6   EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 54  RFGHEELASEIL----------KLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GI 101
             G  +  + +L          +           K +T LH A     +  V L V  G 
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 102 DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDI 161
           D          N         R      +                   L ++A    L I
Sbjct: 126 DVQA-----AANGDFFKKTKGRPGFYFGE-----------------LPLSLAACTNQLAI 163

Query: 162 VKELLEARQEFA--WKKDLNGHTPLHLSCSKGHLEITRELLKLD---------------P 204
           VK LL+   + A    +D  G+T LH         +                        
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN 259
            L  + + +G TPL  AA  G+I ++  IL         R IH     H    ++
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  110 bits (276), Expect = 4e-27
 Identities = 37/269 (13%), Positives = 76/269 (28%), Gaps = 61/269 (22%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDN-------ESVLYVA---CER 123
                    + +A  +     ++  +        +L           ++ L  A      
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 124 GRLDVAKQLLNYSSLLILEVDGLT-----------TSLHVSAMAGHLDIVKELLEA---- 168
           G+ D    LL+ +         +            T+LH++    ++ +V  L+E     
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 169 ---------RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL--PDNEGRTP 217
                    ++         G  PL L+     L I + LL+     + +   D+ G T 
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187

Query: 218 LHWAAIKGRINI---------------IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE 262
           LH         +               +   L   L+  E+    G T L L   + +  
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247

Query: 263 AVKYLMETLNITKLANMPDNDGNTILHLA 291
            + Y+++           +       H A
Sbjct: 248 VLAYILQR----------EIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (275), Expect = 4e-27
 Identities = 48/247 (19%), Positives = 82/247 (33%), Gaps = 53/247 (21%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFA-------WKKDLNGHTPLH---LSCSKGHLEITR 197
            S+  +    +   ++ LL   Q          +K    G T L    L+   G  +   
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 198 ELLKLDPDLSSLP----------DNEGRTPLHWAAIKGRINII-------------DEIL 234
            LL +     SL             +G+T LH A  +  + ++                 
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134

Query: 235 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA--- 291
                        GE  L L    NQ   VK+L++        +  D+ GNT+LH     
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194

Query: 292 ------TAGKLTTMVIYLLKLGVDVN-------AINRKGYTALDVVESDASNSGALQIVP 338
                     +T+M   +L LG  ++         NRKG T L +    A++SG + ++ 
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL----AASSGKIGVLA 250

Query: 339 ALEEAGA 345
            + +   
Sbjct: 251 YILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 24/131 (18%)

Query: 47  TILHLTARFGHEELASEILK--LCPEMVAAENEKMETPLHEACREGRLNFVKLFVGID-- 102
             L L A      +   +L+    P  ++A +    T LH                    
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 103 -------------PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
                          +    NR   + L +A   G++ V   +L        E+      
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------REIHEPEC- 262

Query: 150 LHVSAMAGHLD 160
            H +A   H  
Sbjct: 263 RHAAAHHHHHH 273

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  107 bits (269), Expect = 2e-27
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           +    L  +   G  +  R L+      ++  D  G +PLH AA  G  +   E+L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTT-EVLLRAG 57

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKL 296
            S + RT    T LH+         V+ L     +   A  N  D    T LH AT    
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVL-----LKHGADVNAKDMLKMTALHWATEHNH 112

Query: 297 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 341
             +V  L+K G DV+  ++   TA D+    + ++G   +   L+
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDI----SIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 96.3 bits (241), Expect = 1e-23
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 25/165 (15%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDN--ESVLYVACERGRLDVAKQLLNY 135
              L EA R G+ + V++ +  G           D    S L++A + G     + LL  
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAP------FTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 136 SSLLILEVDGLT----TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCS 189
                   D  T    T LH++A  GH +IV+ LL+  A       KD+   T LH +  
Sbjct: 57  GV----SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN---AKDMLKMTALHWATE 109

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
             H E+   L+K   D+ +      +T    +   G  ++  EIL
Sbjct: 110 HNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLA-EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.1 bits (238), Expect = 4e-23
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 112 DNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--AR 169
           D    L  A   G+ D  + L+   +    +  G T+ LH++A  GH    + LL     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI 229
           ++    +     TPLH++ S+GH  I   LLK   D+++  D    T LHWA       +
Sbjct: 60  RD---ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEV 115

Query: 230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
           + E+L         ++   +T   +++ N   +  + L
Sbjct: 116 V-ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.9 bits (162), Expect = 5e-13
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 248 GETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
               L    +  Q + V+ LM      T      D  G + LHLA      +    LL+ 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-----DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           GV  +A  +   T L +    A++ G   IV  L + GA
Sbjct: 57  GVSRDARTKVDRTPLHM----AASEGHANIVEVLLKHGA 91

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.5 bits (161), Expect = 8e-13
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 45/160 (28%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            + LHL A++GH     E+L        A  +   TPLH A  EG  N V++ +  G D 
Sbjct: 35  TSPLHLAAQYGHFSTT-EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
           +      +D                                   T+LH +    H ++V+
Sbjct: 94  NA-----KDML---------KM----------------------TALHWATEHNHQEVVE 117

Query: 164 ELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
            L++  A       +     T   +S   G+ ++  E+L+
Sbjct: 118 LLIKYGADVH---TQSKFCKTAFDISIDNGNEDLA-EILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  107 bits (269), Expect = 2e-27
 Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             L  +A  G +  V+ LL          +  G T L +    G   I  ELLK     +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 62

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVK 265
              D  G +P+H AA  G ++ +  ++      A++      G   +HL V+      V 
Sbjct: 63  V-QDTSGTSPVHDAARTGFLDTLKVLVE---HGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK 305
           +L    ++    +  D  G T L LA       +V  L  
Sbjct: 119 FLAAESDL----HRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  101 bits (255), Expect = 2e-25
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 16/159 (10%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVD--GLTTSLHVSAMAGHLDIVKELLE--ARQEF 172
           L  A  RG +   ++LL+   +    ++  G  T+L V  M G   I  ELL+  A    
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFG-KTALQV-MMFGSTAIALELLKQGASPN- 62

Query: 173 AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE 232
              +D +G +P+H +   G L+  + L++   D++  PD  G  P+H A  +G   ++  
Sbjct: 63  --VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVV-S 118

Query: 233 ILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
            L      +    R   G T L L ++    + V  L  
Sbjct: 119 FL---AAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 98.3 bits (246), Expect = 3e-24
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 13/158 (8%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLL 139
             L  A   G +  V+  +  +      LNR  ++ L V    G   +A +LL   +S  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
           + +  G T+ +H +A  G LD +K L+E  A        D  G  P+HL+  +GH  +  
Sbjct: 63  VQDTSG-TSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAVVS 118

Query: 198 ELLK-LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
            L    D       D  G TPL  A  +G  +++ +IL
Sbjct: 119 FLAAESDLHRR---DARGLTPLELALQRGAQDLV-DIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 24/165 (14%)

Query: 180 GHTPLHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
               L  + ++G ++  R LL      PD     +  G+T L      G   I  E+L  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL---NRFGKTALQVMM-FGSTAIALELLK- 56

Query: 237 NLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLAT 292
             Q A   ++   G + +H   +    + +K L     +   A  N+PD  G   +HLA 
Sbjct: 57  --QGASPNVQDTSGTSPVHDAARTGFLDTLKVL-----VEHGADVNVPDGTGALPIHLAV 109

Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
               T +V +L     D++  + +G T L++    A   GA  +V
Sbjct: 110 QEGHTAVVSFLAA-ESDLHRRDARGLTPLEL----ALQRGAQDLV 149

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 86.3 bits (215), Expect = 4e-20
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 12/160 (7%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              L   A  G  +    +L        A N   +T L      G        +  G   
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS- 60

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIV 162
                 +    S ++ A   G LD  K L+ + + + + +  G    +H++   GH  +V
Sbjct: 61  --PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVV 117

Query: 163 KELLE-ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
             L   +      ++D  G TPL L+  +G  ++   L  
Sbjct: 118 SFLAAESDLH---RRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 284 GNTILHLATA-GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 342
               L  A A G +  +   L +  V  +A+NR G TAL V        G+  I   L +
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV----MMF-GSTAIALELLK 56

Query: 343 AGA 345
            GA
Sbjct: 57  QGA 59

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  106 bits (267), Expect = 7e-27
 Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 12/176 (6%)

Query: 148 TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
            ++  +AM G  +   EL E     + +  K    +  L  +  +   +I+  L+    D
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL---QSAEM--RTIHGETVLHLTVKNNQ 260
           + S    EG T        G  +I        +   + A++       + V+   + N  
Sbjct: 68  IKS-RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 261 YEAVKY--LMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
            +  +   L + +         + D  G T L      +    +  +       N 
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.6 bits (207), Expect = 7e-19
 Identities = 24/205 (11%), Positives = 49/205 (23%), Gaps = 53/205 (25%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
             +  A   G           +     K +    ++LY                      
Sbjct: 8   RTVSAAAMLGTYEDFLEL--FEKGYEDKESVLKSNILYDV-------------------- 45

Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITR- 197
                    L  +       I   L+   A  +    +   G T        G  +IT  
Sbjct: 46  ---------LRNNNDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQGGGNDITGT 93

Query: 198 -ELLKL------DPDLSSLPDNEGRTPLHWAAIKGRINIID--EILSLNLQSA----EMR 244
            EL K+      D           +  +        ++  +   +  L    +     ++
Sbjct: 94  TELCKIFLEKGADIT---ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150

Query: 245 TIHGETVLHLTVKNNQYEAVKYLME 269
              G T L    +  +  A+K + +
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 44/199 (22%)

Query: 14  LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEM-- 71
           +    + G  + FL L ++   + K++V  S   IL+   R  ++E   +I         
Sbjct: 10  VSAAAMLGTYEDFLELFEKG-YEDKESVLKS--NILYDVLRNNNDEARYKISMFLINKGA 66

Query: 72  -VAAENEKMETPLHEACREGRLN------FVKLFV--GIDPSVIYKLNRDNESVLYVACE 122
            + +  ++  T      + G  +        K+F+  G D   I  L +  + V++    
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIF 123

Query: 123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
              +D  + +  Y  +                      +              KD  G T
Sbjct: 124 NYFVDENEMIPLYKLIFS----------QSGL-----QL-----LI-------KDKWGLT 156

Query: 183 PLHLSCSKGHLEITRELLK 201
            L            + +  
Sbjct: 157 ALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 10/104 (9%)

Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
               +        YE    L E     K + +  N    +L          + ++L+  G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALE------EAGA 345
            D+ +  ++G T            G   I    E      E GA
Sbjct: 66  ADIKSRTKEGTTLF----FPLFQGGGNDITGTTELCKIFLEKGA 105

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 10/104 (9%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 46  NTILHLTARFGHEELAS--EILKLCPEM---VAAENEKMETPLHEACREGRLNFVKLFV- 99
            T+     + G  ++    E+ K+  E    + A  +  +  + +      ++  ++   
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135

Query: 100 --------GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
                   G+   +    ++   + L       +    K + +Y
Sbjct: 136 YKLIFSQSGLQLLIK---DKWGLTALEFVKRCQKPIALKMMEDY 176

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (266), Expect = 8e-27
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 17/163 (10%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           +    L  +   G  +  R L+    D+++  D  G TPLH AA  G + I++ +L    
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLK--- 68

Query: 239 QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 294
             A        G T L L       E V+ L     +   A  N  D +G+T LHLA   
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVL-----LKNGADVNANDMEGHTPLHLAAMF 123

Query: 295 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
               +V  LLK G DVNA ++ G TA D+    + ++G   + 
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDI----SIDNGNEDLA 162

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  103 bits (259), Expect = 8e-26
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 21/166 (12%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
             L EA R GR + V++ +  G D   +   +    + L++A   G L++ + LL   + 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA- 71

Query: 139 LILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKG 191
              +V      G+T  L ++A+ GHL+IV+ LL+  A        D+ GHTPLHL+   G
Sbjct: 72  ---DVNAVDHAGMT-PLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAMFG 124

Query: 192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN 237
           HLEI   LLK   D+++  D  G+T    +   G  ++ + +  LN
Sbjct: 125 HLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (251), Expect = 8e-25
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 21/162 (12%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--AR 169
           L  A   GR D  + L+   +    +V      G  T LH++A  GHL+IV+ LL+  A 
Sbjct: 18  LLEAARAGRDDEVRILMANGA----DVNAEDASG-WTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI 229
                  D  G TPL L+   GHLEI   LLK   D+++  D EG TPLH AA+ G + I
Sbjct: 73  VN---AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEI 128

Query: 230 IDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
           ++ +L      A    +   G+T   +++ N   +  + L +
Sbjct: 129 VEVLLK---NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.3 bits (228), Expect = 1e-21
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 21/167 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              L   AR G ++    IL      V AE+    TPLH A   G L  V++ +  G D 
Sbjct: 15  GKKLLEAARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD- 72

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
             +  ++    + L +A   G L++ + LL   +    +V     +G T  LH++AM GH
Sbjct: 73  --VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHT-PLHLAAMFGH 125

Query: 159 LDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD 203
           L+IV+ LL+  A       +D  G T   +S   G+ ++   L KL+
Sbjct: 126 LEIVEVLLKNGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.2 bits (207), Expect = 7e-19
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 211 DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 268
            ++    L  AA  GR + +  +++     A        G T LHL   N   E V+ L 
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVL- 66

Query: 269 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
               +   A  N  D+ G T L LA       +V  LLK G DVNA + +G+T L +   
Sbjct: 67  ----LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL--- 119

Query: 327 DASNSGALQIVPALEEAGA 345
            A+  G L+IV  L + GA
Sbjct: 120 -AAMFGHLEIVEVLLKNGA 137

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  105 bits (265), Expect = 1e-26
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
            +      L  +   G +E  ++L  +        +    TPLH+AA   R+++++ +L 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 236 LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 291
                A    +   G   LH       YE  + L     +   A  N+ D    T LH A
Sbjct: 64  ---HGADVHAKDKGGLVPLHNACSYGHYEVAELL-----VKHGAVVNVADLWKFTPLHEA 115

Query: 292 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            A     +   LL+ G D    NR G T LD+      + G   I   L    A
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDL----VKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 73  AAENEKMETPLHEACREGRLNFVKLFV---GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
           A  N + +  L EA + G +  VK       ++      +     + L+ A    R+ V 
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVN---CRDIEGRQSTPLHFAAGYNRVSVV 58

Query: 130 KQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHT 182
           + LL + +    +V      GL   LH +   GH ++ + L++  A        DL   T
Sbjct: 59  EYLLQHGA----DVHAKDKGGLV-PLHNACSYGHYEVAELLVKHGAVVN---VADLWKFT 110

Query: 183 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           PLH + +KG  EI + LL+   D +   + +G TPL      G  +I  ++L
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVK-DGDTDIQ-DLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.0 bits (139), Expect = 8e-10
 Identities = 39/159 (24%), Positives = 53/159 (33%), Gaps = 45/159 (28%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T LH  A +    +  E L      V A+++    PLH AC  G     +L V  G   +
Sbjct: 44  TPLHFAAGYNRVSVV-EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 102

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
           V      D                                   T LH +A  G  +I K 
Sbjct: 103 V-----ADLW---------KF----------------------TPLHEAAAKGKYEICKL 126

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           LL+  A      KK+ +G+TPL L    G  +I   L  
Sbjct: 127 LLQHGADPT---KKNRDGNTPLDLV-KDGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 3e-05
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 17/97 (17%)

Query: 46  NTILHLTARFGHEELASEIL-----KLCPEMVAAENEKMETPLHEACREGRLNFVKLFV- 99
              LH    +GH E+A E+L           V   +    TPLHEA  +G+    KL + 
Sbjct: 76  LVPLHNACSYGHYEVA-ELLVKHGAV-----VNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 100 -GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
            G D     K NRD  + L +  + G  D+   L   
Sbjct: 130 HGAD---PTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  106 bits (266), Expect = 1e-26
 Identities = 35/174 (20%), Positives = 54/174 (31%), Gaps = 27/174 (15%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLN--GHTPLHLSCSKGHLEITRELLK-LDP 204
               +    GH                  D+     TP   +  K   +   +LL+  D 
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYI------AADVVSEYETPWWTAARKADEQALSQLLEDRDV 69

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQ 260
           D     D  GRT L + A  G    +  +      L+ +        G T LH+     +
Sbjct: 70  DA---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----GGLTALHMAAGYVR 122

Query: 261 YEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
            E V+ L     +   A   + D  G T L LA     TT     ++ G  +  
Sbjct: 123 PEVVEAL-----VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (263), Expect = 3e-26
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           +    G     +    GH         +  D+     +E  TP   AA K     +   L
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQAL-SQL 63

Query: 235 SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM---PDNDGNTILH 289
              L+    +    +G T L         + V+ L         A++       G T LH
Sbjct: 64  ---LEDRDVDAVDENGRTALLFVAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTALH 115

Query: 290 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 346
           +A       +V  L++LG D+   + +G TAL++    A             + G R
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALEL----AREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  100 bits (252), Expect = 9e-25
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 71  MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAK 130
           + +    +         ++G          I   V      + E+  + A  +       
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 61

Query: 131 QLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK 190
           QLL    +  ++ +G  T+L   A  G    V+ L EA  +   +    G T LH++   
Sbjct: 62  QLLEDRDVDAVDENG-RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120

Query: 191 GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
              E+   L++L  D+    D  G T L  A    +       + 
Sbjct: 121 VRPEVVEALVELGADIEV-EDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.9 bits (237), Expect = 9e-23
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 12/163 (7%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE-A 168
             +      +  + G           ++ +    +   T    +A       + +LLE  
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV--VSEY-ETPWWTAARKADEQALSQLLEDR 67

Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN 228
             +     D NG T L      G  +  R L +   DL       G T LH AA   R  
Sbjct: 68  DVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124

Query: 229 IIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
           +++ ++      A  E+    G T L L  +  +       M+
Sbjct: 125 VVEALVE---LGADIEVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 22/124 (17%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
           T L   A  G ++    + +   ++   +     T LH A    R   V+  V  G D  
Sbjct: 78  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-- 135

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
            I   +    + L +A E  +       +                       G   ++  
Sbjct: 136 -IEVEDERGLTALELAREILKTTPKGNPM-----------------QFGRRIGLEKVINV 177

Query: 165 LLEA 168
           L   
Sbjct: 178 LEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 7/65 (10%)

Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
           + +    +G     +      +   +    +  DV +   +  T        A+     Q
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPW----WTAARKADEQ 58

Query: 336 IVPAL 340
            +  L
Sbjct: 59  ALSQL 63

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  106 bits (265), Expect = 8e-26
 Identities = 48/249 (19%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 148 TSLHVSA----MAGHLDIVKELLE--AR-QEFAWKKDLNGHTPLH---LSCSKGHLEITR 197
             L          G   ++  LL    R  +  +++   G T L    L+ S G  +   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 198 ELLKLDPDLSSLP----------DNEGRTPLHWAAIKGR-------------INIIDEIL 234
            LL +     ++              G+T LH A  +               ++      
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 235 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLAT 292
               +        GE  L L    NQ   V YL E  N  K A     D+ GNT+LH   
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE--NGHKQADLRRQDSRGNTVLHALV 184

Query: 293 AGK---------LTTMVIYLLKLGVDVNA-------INRKGYTALDVVESDASNSGALQI 336
           A           +T M   LL     +         +N  G + L +    A+ +G + I
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM----AAKTGKIGI 240

Query: 337 VPALEEAGA 345
              +     
Sbjct: 241 FQHIIRREI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 92.1 bits (229), Expect = 5e-21
 Identities = 45/253 (17%), Positives = 75/253 (29%), Gaps = 53/253 (20%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKM-------ETPLHEA---CREGRLNFVK 96
            IL      G  +    +L           ++        +T L +A      GR + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 97  LFVGIDPSVIYKLNRDNESV----------LYVACERGRLDVAKQLLNY----------- 135
           + + I           N             L++A ER      + L+             
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 136 ----SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFA--WKKDLNGHTPLHLSCS 189
                        G    L ++A      IV  L E   + A   ++D  G+T LH   +
Sbjct: 127 FFQPKDEGGYFYFG-ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185

Query: 190 KGH---------LEITRELLKLDPDL------SSLPDNEGRTPLHWAAIKGRINIIDEIL 234
                        ++   LL     L       +L +N+G +PL  AA  G+I I   I+
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

Query: 235 SLNLQSAEMRTIH 247
              +  A     H
Sbjct: 246 RREIADAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 36/168 (21%)

Query: 214 GRTPLHWAAIKGRINIIDEILSL------NLQSAEM-RTIHGETVLHLTVKNNQY---EA 263
            R  L     +G  + ++ +LS        L   E      G+T L   + N      + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 264 VKYLME----TLNITKLANMPDND----GNTILHLATAGKLTTMVIYLLKLGVDVNAINR 315
           +  L++    T N+ +  N P  D    G T LH+A   +    V  L++ G DV+A  R
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 316 K--------------GYTALDVVESDASNSGALQIVPALEEAGARRCD 349
                          G   L    S A+ +    IV  L E G ++ D
Sbjct: 125 GRFFQPKDEGGYFYFGELPL----SLAACTNQPHIVHYLTENGHKQAD 168

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (258), Expect = 8e-26
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 144 DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           +     L  +A  G L+ +  LL+          ++  G T L +    G+ EI R LL 
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVM-KLGNPEIARRLLL 58

Query: 202 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNN 259
              +     D  G   +H AA  G ++ +  +L      A   +    G   LHL  K  
Sbjct: 59  RGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEG 114

Query: 260 QYEAVKYLME--TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
               V++L++    N+       ++ G+T   LA       +V  +   G
Sbjct: 115 HLRVVEFLVKHTASNV----GHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 99.8 bits (250), Expect = 9e-25
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
                L  + ++G LE    LL+ + ++++  +  GRT L      G   I   +L    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLL--- 58

Query: 239 QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 294
           + A  +++   G  V+H   +    + ++ L     +   A  N+ DN+GN  LHLA   
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTL-----LEFQADVNIEDNEGNLPLHLAAKE 113

Query: 295 KLTTMVIYLLKLG-VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
               +V +L+K    +V   N KG TA D+    A   G  ++V  ++  GA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDL----ARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 97.8 bits (245), Expect = 4e-24
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 17/165 (10%)

Query: 112 DNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELL 166
              + L  A  RG L+    LL  +      V      G  T+L V  + G+ +I + LL
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNV----NVNAQNGFG-RTALQVMKL-GNPEIARRLL 57

Query: 167 E--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK 224
              A  +    KD  G   +H +   G L+  + LL+   D++   DNEG  PLH AA +
Sbjct: 58  LRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKE 113

Query: 225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
           G + +++ ++     +   R   G+T   L     + E V  +  
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 28/171 (16%)

Query: 76  NEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
            E     L  A   G L  +   +   ++   +   N    + L V    G  ++A++LL
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMKL-GNPEIARRLL 57

Query: 134 NYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHL 186
              +            G    +H +A AG LD ++ LLE  A       +D  G+ PLHL
Sbjct: 58  LRGA----NPDLKDRTGFA-VIHDAARAGFLDTLQTLLEFQADVN---IEDNEGNLPLHL 109

Query: 187 SCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           +  +GHL +   L+K    +       +++G T    A + GR  ++  ++
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHR---NHKGDTACDLARLYGRNEVV-SLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.7 bits (198), Expect = 1e-17
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              L   A  G  E     L      V A+N    T L    + G     +  +  G + 
Sbjct: 6   GNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGAN- 62

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
                 +R   +V++ A   G LD  + LL + +    +V     +G    LH++A  GH
Sbjct: 63  --PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA----DVNIEDNEGNL-PLHLAAKEGH 115

Query: 159 LDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           L +V+ L++        ++  G T   L+   G  E+   +  
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 78.2 bits (194), Expect = 3e-17
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 211 DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 268
                  L  AA +G +  +  +L     +     +   G T L +    N  E  + L+
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ---NNVNVNAQNGFGRTALQVMKLGNP-EIARRLL 57

Query: 269 ET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 327
               N     ++ D  G  ++H A        +  LL+   DVN  + +G   L +    
Sbjct: 58  LRGANP----DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL---- 109

Query: 328 ASNSGALQIVPALEEAGA 345
           A+  G L++V  L +  A
Sbjct: 110 AAKEGHLRVVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVA---AENEKMETPLHEACREGRLNFVKLFVGID 102
             ++H  AR G  +     L+   E  A    E+ +   PLH A +EG L  V+  V   
Sbjct: 71  FAVIHDAARAGFLD----TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
            S +   N   ++   +A   GR +V   +   
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 148 TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
           T LH++++ G +  V+ LL+  +       KD  G TPLH +C+ GHL++   LL+    
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
           +++    +  +PLH AA  G ++I+ ++L     S     I G   +  T   +    + 
Sbjct: 69  VNT-TGYQNDSPLHDAAKNGHVDIV-KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126

Query: 266 YL 267
             
Sbjct: 127 LP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 50/174 (28%)

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 233
            +  G T LH++  KG +     LL+   DP++    D+ G TPLH A            
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEAC----------- 51

Query: 234 LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 291
                                   +   + V+ L     +   A  N      ++ LH A
Sbjct: 52  -----------------------NHGHLKVVELL-----LQHKALVNTTGYQNDSPLHDA 83

Query: 292 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
                  +V  LL  G   NA+N  G   +D       +     ++   E+  +
Sbjct: 84  AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY----TDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 85.2 bits (212), Expect = 6e-20
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 20/137 (14%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
             N + ET LH A  +G +  V+  +  G D       +    + L+ AC  G L V + 
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 132 LLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPL 184
           LL + +     V         + LH +A  GH+DIVK LL   A +      ++ G  P+
Sbjct: 62  LLQHKA----LVNTTGYQN-DSPLHDAAKNGHVDIVKLLLSYGASRN---AVNIFGLRPV 113

Query: 185 HLSCSKGHLEITRELLK 201
             +  +    +     K
Sbjct: 114 DYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH     GH ++   +L+     V     + ++PLH+A + G ++ VKL +  G   
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS- 101

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLN 134
                +N      +    +     +      
Sbjct: 102 --RNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 48/174 (27%)

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
               +    L  + ++G +E  R+LL+   D ++  +  GR P+                
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMM------------ 53

Query: 235 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTI-LHLA 291
                                      +  + L     +   A  N  D    T  +H A
Sbjct: 54  -----------------------MGSAQVAELL-----LLHGAEPNCADPATLTRPVHDA 85

Query: 292 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
                   ++ L + G  ++  +  G   +D+    A   G   I   L  A  
Sbjct: 86  AREGFLDTLVVLHRAGARLDVCDAWGRLPVDL----AEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 20/137 (14%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
                 +  L  A   G++  V+  +  G D      LNR     + V    G   VA+ 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMM-MGSAQVAEL 62

Query: 132 LLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPL 184
           LL + +    E        LT  +H +A  G LD +  L    AR +     D  G  P+
Sbjct: 63  LLLHGA----EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPV 115

Query: 185 HLSCSKGHLEITRELLK 201
            L+  +GH +I R L  
Sbjct: 116 DLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 88.7 bits (221), Expect = 3e-21
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLE- 167
              +++ L  A  RG+++  +QLL   +    L   G    + V  M G   + + LL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG-RRPIQV-MMMGSAQVAELLLLH 66

Query: 168 -ARQEFAWKKDLNGHT-PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG 225
            A        D    T P+H +  +G L+    L +    L    D  GR P+  A  +G
Sbjct: 67  GAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQG 122

Query: 226 RINIIDEILS 235
             +I   + +
Sbjct: 123 HRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMV 300
            M     +  L       Q E V+ L+E   +     N  +  G   + +   G    + 
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADP----NALNRFGRRPIQVMMMGSA-QVA 60

Query: 301 IYLLKLGVDVNAINRKGYT-ALDVVESDASNSGALQIVPALEEAGA 345
             LL  G + N  +    T  +     DA+  G L  +  L  AGA
Sbjct: 61  ELLLLHGAEPNCADPATLTRPV----HDAAREGFLDTLVVLHRAGA 102

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.0 bits (144), Expect = 8e-11
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 8/125 (6%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
             L   A  G  E     L        A N     P+      G     +L +  G +P+
Sbjct: 14  AGLATAAARGQVETV-RQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN 71

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVK 163
                       ++ A   G LD    L    + L + +  G    + ++   GH DI +
Sbjct: 72  C--ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL-PVDLAEEQGHRDIAR 128

Query: 164 ELLEA 168
            L  A
Sbjct: 129 YLHAA 133

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.9 bits (227), Expect = 5e-22
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 148 TSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
                +   G LD VK+ +          +    G  PLH +   G LEI   LL    D
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEA 263
           +++ PD    TPL  A  +G ++ +  +LS   + A   ++   G T    T        
Sbjct: 66  INA-PDKHHITPLLSAVYEGHVSCVKLLLS---KGADKTVKGPDGLTAFEATDNQAIKAL 121

Query: 264 VK 265
           ++
Sbjct: 122 LQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.1 bits (225), Expect = 9e-22
 Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 48/162 (29%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
                   +   G L+  ++ +    D++      GR PLH+AA  G++ I         
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEI--------- 55

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATA-GK 295
                                    +++L     + K A  N PD    T L  A   G 
Sbjct: 56  -------------------------LEFL-----LLKGADINAPDKHHITPLLSAVYEGH 85

Query: 296 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           ++  V  LL  G D       G TA +       N     ++
Sbjct: 86  VSC-VKLLLSKGADKTVKGPDGLTAFEA----TDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 84.4 bits (210), Expect = 8e-20
 Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 44/162 (27%)

Query: 73  AAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAK 130
                  +     A + G L+ VK +V  G D       NR  E                
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV------NRTLE---------------- 38

Query: 131 QLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSC 188
                         G    LH +A  G L+I++ LL   A        D +  TPL  + 
Sbjct: 39  -------------GGR-KPLHYAADCGQLEILEFLLLKGADIN---APDKHHITPLLSAV 81

Query: 189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII 230
            +GH+   + LL    D +     +G T       +    ++
Sbjct: 82  YEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 50/157 (31%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKME---TPLHEACREGRLNFVKLFV--G 100
           +       + G      + +K         N  +E    PLH A   G+L  ++  +  G
Sbjct: 8   DKEFMWALKNGDL----DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 101 IDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLD 160
            D +       D                                   T L  +   GH+ 
Sbjct: 64  ADINA-----PDK------------------------------HH-ITPLLSAVYEGHVS 87

Query: 161 IVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
            VK LL   A +     K  +G T    + ++    +
Sbjct: 88  CVKLLLSKGADKT---VKGPDGLTAFEATDNQAIKAL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.5 bits (226), Expect = 7e-22
 Identities = 59/169 (34%), Positives = 77/169 (45%), Gaps = 46/169 (27%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           NG TPLHL+   GHLE+ + LL+   D+++  D  GRTPLH AA  G             
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG------------- 46

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKL 296
                         HL       E VK L     +   A  N  D +G T LHLA     
Sbjct: 47  --------------HL-------EVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGH 80

Query: 297 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
             +V  LL+ G DVNA ++ G T L +    A+ +G L++V  L EAGA
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 20/131 (15%)

Query: 80  ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
            TPLH A R G L  VKL +  G D   +   +++  + L++A   G L+V K LL   +
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 138 LLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSK 190
               +V     +G T  LH++A  GHL++VK LLE  A       KD NG TPLHL+   
Sbjct: 60  ----DVNAKDKNGRT-PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARN 111

Query: 191 GHLEITRELLK 201
           GHLE+ + LL+
Sbjct: 112 GHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.1 bits (160), Expect = 6e-13
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 16/130 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LHL AR GH E+  ++L      V A+++   TPLH A R G L  VKL +  G D 
Sbjct: 3   RTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGH 158
             +   +++  + L++A   G L+V K LL   +    +V     +G T  LH++A  GH
Sbjct: 61  --VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRT-PLHLAARNGH 113

Query: 159 LDIVKELLEA 168
           L++VK LLEA
Sbjct: 114 LEVVKLLLEA 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 9e-21
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 173 AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE 232
                 +G+TPLH +   GH E  ++LL    D+++    +G TPLH AA  G   I+  
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKL 60

Query: 233 ILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTIL 288
           +L+   + A    R+  G T  HL  KN  +E VK L       K A++       +   
Sbjct: 61  LLA---KGADVNARSKDGNTPEHLAKKNGHHEIVKLL-----DAKGADVNARSWGSSHHH 112

Query: 289 H 289
           H
Sbjct: 113 H 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 76.3 bits (189), Expect = 5e-17
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKE 164
           ++D  + L+ A + G  +  K+LL+  +    +V     DG  T LH++A  GH +IVK 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGA----DVNARSKDG-NTPLHLAAKNGHAEIVKL 60

Query: 165 LLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 219
           LL   A       +  +G+TP HL+   GH EI + L     D+++          H
Sbjct: 61  LLAKGADVN---ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA-RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.6 bits (164), Expect = 1e-13
 Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 45/137 (32%)

Query: 211 DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 270
             +G TPLH AA  G                           H        E VK L   
Sbjct: 6   SKDGNTPLHNAAKNG---------------------------HA-------EEVKKL--- 28

Query: 271 LNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 328
             ++K A  N    DGNT LHLA       +V  LL  G DVNA ++ G T   +    A
Sbjct: 29  --LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL----A 82

Query: 329 SNSGALQIVPALEEAGA 345
             +G  +IV  L+  GA
Sbjct: 83  KKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.2 bits (129), Expect = 5e-09
 Identities = 34/147 (23%), Positives = 47/147 (31%), Gaps = 52/147 (35%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAE-NEKME---TPLHEACREGRLNFVKLFV--G 100
           T LH  A+ GH E   ++L        A+ N + +   TPLH A + G    VKL +  G
Sbjct: 11  TPLHNAAKNGHAEEVKKLLS-----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 101 IDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLD 160
            D +      R                                DG  T  H++   GH +
Sbjct: 66  ADVNA-----RSK------------------------------DGN-TPEHLAKKNGHHE 89

Query: 161 IVKELLE--ARQEFAWKKDLNGHTPLH 185
           IVK L    A       +        H
Sbjct: 90  IVKLLDAKGADVN---ARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.8 bits (123), Expect = 3e-08
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 277 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 336
                 DGNT LH A        V  LL  G DVNA ++ G T L +    A+ +G  +I
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL----AAKNGHAEI 57

Query: 337 VPALEEAGA 345
           V  L   GA
Sbjct: 58  VKLLLAKGA 66

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.9 bits (201), Expect = 6e-19
 Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 8/93 (8%)

Query: 144 DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           +G  T LH++A  GHL++VK LLE  A       KD NG TPLHL+   GHLE+ + LL+
Sbjct: 1   NG-RTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 202 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
              D+++  D  GRTPLH AA  G + ++ ++L
Sbjct: 57  AGADVNA-KDKNGRTPLHLAARNGHLEVV-KLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 77.4 bits (192), Expect = 1e-17
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           NG TPLHL+   GHLE+ + LL+   D+++  D  GRTPLH AA  G + ++  +L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE--- 56

Query: 239 QSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 269
             A    +  +G T LHL  +N   E VK L+E
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.4 bits (166), Expect = 3e-14
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 15/92 (16%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLILEV-----DGLTTSLHVSAMAGHLDIVKELLE--AR 169
           L++A   G L+V K LL   +    +V     +G  T LH++A  GHL++VK LLE  A 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGA----DVNAKDKNG-RTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
                 KD NG TPLHL+   GHLE+ + LL+
Sbjct: 61  VN---AKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.6 bits (164), Expect = 6e-14
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLL 304
           +G T LHL  +N   E VK L     +   A  N  D +G T LHLA       +V  LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 305 KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           + G DVNA ++ G T L      A+ +G L++V  L EAGA
Sbjct: 56  EAGADVNAKDKNGRTPL----HLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.1 bits (142), Expect = 6e-11
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 15/95 (15%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
           TPLH A R G L  VKL +  G D   +   +++  + L++A   G L+V K LL   + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 139 LILEV-----DGLTTSLHVSAMAGHLDIVKELLEA 168
              +V     +G T  LH++A  GHL++VK LLEA
Sbjct: 60  ---DVNAKDKNGRT-PLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 3e-07
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 20/99 (20%)

Query: 46  NTILHLTARFGHEELASEILKLCPEM-------VAAENEKMETPLHEACREGRLNFVKLF 98
            T LHL AR GH E+         ++       V A+++   TPLH A R G L  VKL 
Sbjct: 3   RTPLHLAARNGHLEVV--------KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 99  V--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
           +  G D   +   +++  + L++A   G L+V K LL  
Sbjct: 55  LEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 81.7 bits (203), Expect = 9e-19
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           +    L  +   G  +  R L+    D+++  D  G TPL+ A   G + I++ +L    
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLK--- 68

Query: 239 QSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 294
             A++      G T LHL       E  + L     +   A  N  D  G T   ++   
Sbjct: 69  NGADVNAVDAIGFTPLHLAAFIGHLEIAEVL-----LKHGADVNAQDKFGKTAFDISIGN 123

Query: 295 KLTTMVIYLLK 305
               +   L K
Sbjct: 124 GNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.0 bits (196), Expect = 9e-18
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 22/131 (16%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLIL--------EVDGLTTSLHVSAMAGHLDIVKELLE- 167
           L  A   G+ D  +       +L+         +  GLT  L+++   GHL+IV+ LL+ 
Sbjct: 18  LLEAARAGQDDEVR-------ILMANGADVNAKDEYGLT-PLYLATAHGHLEIVEVLLKN 69

Query: 168 -ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR 226
            A        D  G TPLHL+   GHLEI   LLK   D+++  D  G+T    +   G 
Sbjct: 70  GADVN---AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGN 125

Query: 227 INIIDEILSLN 237
            ++ + +  LN
Sbjct: 126 EDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 20/132 (15%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
             L EA R G+ + V++ +  G D   +   +    + LY+A   G L++ + LL   + 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA- 71

Query: 139 LILEV-----DGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKG 191
              +V      G  T LH++A  GHL+I + LL+  A       +D  G T   +S   G
Sbjct: 72  ---DVNAVDAIG-FTPLHLAAFIGHLEIAEVLLKHGADVN---AQDKFGKTAFDISIGNG 124

Query: 192 HLEITRELLKLD 203
           + ++   L KL+
Sbjct: 125 NEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T L+L    GH E+  E+L      V A +    TPLH A   G L   ++ +  G D 
Sbjct: 48  LTPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD- 105

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYS 136
             +   ++  ++   ++   G  D+A+ L   +
Sbjct: 106 --VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 282 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 341
           +D    L  A        V  L+  G DVNA +  G T L +    A+  G L+IV  L 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYL----ATAHGHLEIVEVLL 67

Query: 342 EAGA 345
           + GA
Sbjct: 68  KNGA 71

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.5 bits (197), Expect = 3e-18
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKD 177
                    +  L+   S   +  D     L  +A AG  D V+ L+   A       KD
Sbjct: 1   GSSHHHHHHSSGLVPRGS--HMGSDL-GKKLLEAARAGQDDEVRILMANGADVA---AKD 54

Query: 178 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 231
            NG TPLHL+   GHLE+ + LL+   D+ +  D  G+T    +   G  ++ +
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 154 AMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPD 211
           +   H      L+   +          +    L  +   G  +  R L+    D+++  D
Sbjct: 2   SSHHHHHHSSGLVPRGS------HMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KD 54

Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYL 267
             G TPLH AA  G + ++  +L      A+   +   G+T   +++ N   +  + L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLE---AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 47/155 (30%)

Query: 188 CSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH 247
            S  H   +  L+     +     ++    L  AA  G                      
Sbjct: 2   SSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAG---------------------- 35

Query: 248 GETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
                         + V+ LM    ++       D +G+T LHLA       +V  LL+ 
Sbjct: 36  -----QD-------DEVRILMANGADV----AAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALE 341
           G DV A ++ G TA D+    + ++G   +   L+
Sbjct: 80  GADVXAQDKFGKTAFDI----SIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
            ++ +     L     + + ++M  +D    L  A        V  L+  G DV A ++ 
Sbjct: 3   SHHHHHHSSGL-----VPRGSHM-GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 317 GYTALDVVESDASNSGALQIVPALEEAGA 345
           G T L      A+ +G L++V  L EAGA
Sbjct: 57  GSTPL----HLAARNGHLEVVKLLLEAGA 81

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 53  ARFGHEELASEILKLCPEMVAAE-NEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKL 109
           +   H   +S ++        +     +   L EA R G+ + V++ +  G D   +   
Sbjct: 2   SSHHHHHHSSGLVP-----RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAK 53

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL 165
           +++  + L++A   G L+V K LL   + +  +     T+  +S   G+ D+ + L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
              L   AR G ++    IL      VAA+++   TPLH A R G L  VKL +  G D 
Sbjct: 25  GKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD- 82

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQL 132
             +   ++  ++   ++ + G  D+A+ L
Sbjct: 83  --VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
             ET LHL V++    ++  +   +  +   +     G+T LH          +  LL+ 
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR 347
              +   N  G T LD+    A           L +A + R
Sbjct: 228 KASIEIANESGETPLDI----AKRLKHEHCEELLTQALSGR 264

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAW--KKDLNGHTPLHLSCSKGHLEITRELLKLDPD 205
           T+LH++  +     +  +    Q      K+   G T LH  C   + E  + LL+    
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 206 LSSLPDNEGRTPLHWAAIKGRINIID 231
           +  + +  G TPL  A      +  +
Sbjct: 231 I-EIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 179 NGHTPLHLSCSKGHLEITR--ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
              T LHL+            + L  +         +G T LH+  +      + ++L  
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KLLLR 226

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
              S E+    GET L +  +       + L + L+
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 76  NEKMETPLHEACREGRLNFVKL--FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
           +E  ET LH A R      + +  F+  +   + K      + L+  C     +  K LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 134 NY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQ 170
              +S+ I    G  T L ++    H    + L +A  
Sbjct: 226 RGKASIEIANESGE-TPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 112 DNESVLYVACERG---RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
            +E+ L++A        L +   L+  S  L  +    +T+LH   +  + + +K LL  
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDN 212
           +       + +G TPL ++    H      L +      +   +
Sbjct: 228 KASIEIA-NESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 46  NTILHLTARFGHEELAS--EILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GI 101
            T LHL  R          + L      +  +  K  T LH  C       +KL +    
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

Query: 102 DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
              +    N   E+ L +A         + L    S
Sbjct: 230 SIEI---ANESGETPLDIAKRLKHEHCEELLTQALS 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 75/540 (13%), Positives = 153/540 (28%), Gaps = 176/540 (32%)

Query: 160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRT 216
           DI+    +A     +  + +        C K   ++ + +L    +D  +    D    T
Sbjct: 20  DILSVFEDA-----FVDNFD--------C-KDVQDMPKSILSKEEID-HIIMSKDAVSGT 64

Query: 217 P-LHWAAIKGRINI----IDEILSLN---LQSA---EMRTIHGETVLHLTVKNNQYEAV- 264
             L W  +  +  +    ++E+L +N   L S    E R     T +++  ++  Y    
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 265 ---KY------LMETLNITKLANMPDNDGNTILH-LATAGKLTTMVIYLLKLGVDVNAIN 314
              KY          L    L  +     N ++  +  +GK T + + +           
Sbjct: 125 VFAKYNVSRLQPYLKLR-QALLELRPAK-NVLIDGVLGSGK-TWVALDVCL---SYKVQC 178

Query: 315 RKGYTA--LDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQS 372
           +  +    L++   ++  +  L+++  L         Q+ P           TS     S
Sbjct: 179 KMDFKIFWLNLKNCNSPET-VLEMLQKL-------LYQIDPN---------WTSRSDHSS 221

Query: 373 SIPRRAPRESPSRHHRRRNRRRREKQ---IELQTEGLRNARKTIIIVA------VLIAT- 422
           +I  R    S     RR  + +  +    +      L N +      A      +L+ T 
Sbjct: 222 NIKLRI--HSIQAELRRLLKSKPYENCLLV------LLNVQNAKAWNAFNLSCKILLTTR 273

Query: 423 ---VTFAAG---------INPPGGFNQVSGKSLVGKQTSFKVFM----VCNIVALFLSL- 465
              VT              +          KSL+ K    +       V       LS+ 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 466 --GIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIW---TILPRGRGMVW 520
              I   L +   ++  +  +L      ++  S++ L  A    ++   ++ P       
Sbjct: 334 AESIRDGLATWDNWKHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPS---AH 386

Query: 521 VSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEK---------------NRSPN 565
           +   +              L ++          W  + +                 + P 
Sbjct: 387 IPTIL--------------LSLI----------WFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 566 SSISRVEELRMMKKTS-------HES------SNSDLDSSDQG------------GYHLY 600
            S   +  + +  K         H S           DS D              G+HL 
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 72/478 (15%), Positives = 153/478 (32%), Gaps = 142/478 (29%)

Query: 2   EIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELA 61
           EI+ I   M +      LR     F +L+ + E  +++ V   L           ++ L 
Sbjct: 50  EIDHI--IMSKDAVSGTLR----LFWTLLSKQEEMVQKFVEEVLRI--------NYKFLM 95

Query: 62  SEILKLC--PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV 119
           S I      P M         T ++   R+   N        D  V  K N         
Sbjct: 96  SPIKTEQRQPSM--------MTRMYIEQRDRLYN--------DNQVFAKYNVS------- 132

Query: 120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH------LDIVKEL-LEARQEF 172
                RL    +L    +LL L        +    + G       LD+     ++ + +F
Sbjct: 133 -----RLQPYLKLRQ--ALLELRPAKNVL-ID--GVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 173 A--WKKDLNGHTPLHLSCSKGHLEITRELL-KLDPDLSSLPDNEGRTPLHWAAIKGRIN- 228
              W    N ++P  +      LE+ ++LL ++DP+ +S  D+     L   +I+  +  
Sbjct: 183 KIFWLNLKNCNSPETV------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 229 ------------IID-----EIL-SLNLQSAEMRT---------IHGETVLHLTVKNNQY 261
                       ++      +   + NL    + T         +   T  H+++ ++  
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 262 -----EAVKYLMETLNITKLANMPD--NDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
                E    L++ L+  +  ++P      N    L+   +          +   +   +
Sbjct: 297 TLTPDEVKSLLLKYLDC-RPQDLPREVLTTNP-RRLSIIAES---------IRDGLATWD 345

Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGARRC-DQLPPMSPHDIQPIGDTSPISAQ-- 371
              +   D + +   +S     +  LE A  R+  D+L       + P   ++ I     
Sbjct: 346 NWKHVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLS------VFP--PSAHIPTILL 392

Query: 372 ----SSIPRRAPRESPSRHHRRR--NRRRREKQIEL---------QTEGLRNARKTII 414
                 + +       ++ H+     ++ +E  I +         + E      ++I+
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 42/297 (14%), Positives = 91/297 (30%), Gaps = 104/297 (35%)

Query: 58  EELASEILKLCP---EMVAAE---------------NEKMETPLHEAC------REGRLN 93
           ++L  E+L   P    ++A                  +K+ T + E+        E R  
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKM 374

Query: 94  FVKLF-----VGIDPSVIYKL--NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL 146
           F +L        I   ++  +  +     V+          V  +L  YS L+  +    
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---------VVVNKLHKYS-LVEKQPKES 424

Query: 147 TTSLHVSAMAGHLDIVKELLEARQ---------EFAWKKDLNGHTPL--------HLSCS 189
           T S+     + +L++  +L                    D +   P         H+   
Sbjct: 425 TISIP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--- 477

Query: 190 KG-HLEITR--ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 246
            G HL+     E + L   +    D        +   K    I  +  + N   + + T+
Sbjct: 478 -GHHLKNIEHPERMTLFRMV--FLD------FRFLEQK----IRHDSTAWNASGSILNTL 524

Query: 247 HGETVL-----HLTVKNNQYEA-----VKYLM---------ETLNITKLANMPDNDG 284
                L     ++   + +YE      + +L          +  ++ ++A M +++ 
Sbjct: 525 Q---QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 247 HGETVLHLTVKNNQYEAVKYLMETL-----NITKLANMPDNDGNTILHLATAGKLTTMVI 301
             E VLHL VK     ++  L++ +     ++    +    DGNT LH A        + 
Sbjct: 189 PEELVLHLAVKVANQASL-PLVDFIIQNGGHL----DAKAADGNTALHYAALYNQPDCLK 243

Query: 302 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
            LLK    V  +N  G TALD+    A      +    LE+A
Sbjct: 244 LLLKGRALVGTVNEAGETALDI----ARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 148 TSLHVSAMAGH---LDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP 204
             LH++    +   L +V  +++       K   +G+T LH +      +  + LLK   
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRA 250

Query: 205 DLSSLPDNEGRTPLHWAAIKGRINIID 231
            + ++ +  G T L  A  K      +
Sbjct: 251 LVGTV-NEAGETALDIARKKHHKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 180 GHTPLHLSCSKGH---LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
               LHL+    +   L +   +++    L +    +G T LH+AA+  + + + ++L  
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCL-KLLLK 247

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
                      GET L +  K +  E  + L +
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 112 DNESVLYVACERGR---LDVAKQLLNYSSLL-ILEVDGLTTSLHVSAMAGHLDIVKELLE 167
             E VL++A +      L +   ++     L     DG  T+LH +A+    D +K LL+
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG-NTALHYAALYNQPDCLKLLLK 247

Query: 168 --ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDN 212
             A        +  G T L ++  K H E    L +      + P +
Sbjct: 248 GRALVGT---VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 68  CPEMVAAENEKMETPLHEACR---EGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACE 122
            P          E  LH A +   +  L  V   +  G     +     D  + L+ A  
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGNTALHYAAL 235

Query: 123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQ 170
             + D  K LL   +L+    +   T+L ++    H +  + L +A+ 
Sbjct: 236 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 39/220 (17%), Positives = 56/220 (25%), Gaps = 42/220 (19%)

Query: 168 ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL-SSLPDNEGRTPLHWAAIKGR 226
                       G      S     L    + L    D+       +  TPL  A     
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN- 246

Query: 227 INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT 286
                     +L + E    +G  V                          N  D+ G  
Sbjct: 247 ----------SLLACEFLLQNGANV--------------------------NQADSAGRG 270

Query: 287 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 346
            LH AT    T +    LK G D+ A + +G   L +    A  +    IV  L  A  R
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI----AMETANADIVTLLRLAKMR 326

Query: 347 RCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRH 386
             +     +  +             S  P +  R S   H
Sbjct: 327 EAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH 366

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 14/201 (6%)

Query: 82  PLHEACREGRLNFV------KLFVGIDPSVIYKLN-----RDNESVLYVACERGRLDVAK 130
           P     R+ +  ++      K F+   P +  +       R    V      R R    +
Sbjct: 125 PGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLR 184

Query: 131 QLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK-DLNGHTPLHLSCS 189
                 S  +  +         S     L  + + L    +  W     +  TPL  + +
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE 249
              L     LL+   +++   D+ GR PLH A I G   +    L         R   G 
Sbjct: 245 ANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFLKRGA-DLGARDSEGR 302

Query: 250 TVLHLTVKNNQYEAVKYLMET 270
             L + ++    + V  L   
Sbjct: 303 DPLTIAMETANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 9e-04
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLT----TSLHVSAMAGHLDIVKEL 165
            +DN + L  A     L   + LL   +     V+         LH + + GH  +    
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGA----NVNQADSAGRGPLHHATILGHTGLACLF 287

Query: 166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEG 214
           L+   +    +D  G  PL ++    + +I   L       +     + 
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	600
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.59
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.56

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-48  Score=411.58  Aligned_cols=333  Identities=28%  Similarity=0.349  Sum_probs=217.8

Q ss_pred             ccccCccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcH
Q 007515            3 IEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETP   82 (600)
Q Consensus         3 ~~~~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~Tp   82 (600)
                      ++..+..+.++|+.|+..|+.+.++.+++.+.+.  ...+..|.||||+||..|+.++|++|++.+.+ ++.++..|.||
T Consensus         7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~   83 (437)
T 1n11_A            7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTP   83 (437)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCH
Confidence            4455566666777777777777777776654332  23344566666666666666666666666655 55566666666


Q ss_pred             hHHHHHcCCHHHHHHHHhCCccccc--------------------------------ccCCCCCcHHHHHHHhCCHHHHH
Q 007515           83 LHEACREGRLNFVKLFVGIDPSVIY--------------------------------KLNRDNESVLYVACERGRLDVAK  130 (600)
Q Consensus        83 Lh~Aa~~g~~~iv~~Ll~~~~~~~~--------------------------------~~~~~g~tpL~~A~~~g~~e~v~  130 (600)
                      ||+|+..|+.++|++|++.++++..                                ..+..|.||||+|+..|+.++++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            6666666666666666665554421                                12334444555555555555555


Q ss_pred             HHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCC
Q 007515          131 QLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP  210 (600)
Q Consensus       131 ~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~  210 (600)
                      +|++++.+++..+..+.||||.|+..|+.+++++|++.+.+.. ..+.+|.||||+|+..|+.+++++|++.++++.. .
T Consensus       164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~  241 (437)
T 1n11_A          164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-E  241 (437)
T ss_dssp             HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-C
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-C
Confidence            5555554444444445555555555555555555555555443 4455566666666666666666666666666543 5


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHH
Q 007515          211 DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL  290 (600)
Q Consensus       211 d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~  290 (600)
                      +..|.||||+|+..|+.+++++|++.+ ...+..+..|.||||+|+..|+.+++++|++.   +..+|.+|..|+||||+
T Consensus       242 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~  317 (437)
T 1n11_A          242 SVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHV  317 (437)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCCHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccCCCCCCCCCCHHHH
Confidence            666777777777777777777777765 34566677778888888888888888888776   55678888999999999


Q ss_pred             HHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          291 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       291 A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      |+..|+.+++++|+++|+++|.+|..|.|||++|..    .++.+++++|+++|+++.
T Consensus       318 A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             HHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred             HHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCC
Confidence            999999999999999999999999999999998654    467889999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-47  Score=407.87  Aligned_cols=295  Identities=29%  Similarity=0.368  Sum_probs=223.3

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      ..+..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   86 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHC   86 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCCHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHH
Confidence            4567899999999999999999999999887 78899999999999999999999999999998874 458899999999


Q ss_pred             HHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHH
Q 007515          120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL  199 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  199 (600)
                      |+..|+.+++++|++++.+++..+..+.||||.|+..|+.++++.|++.+.+.. ..+..|.||||+|+..|+.+++++|
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999988888888889999999999999999998877765 5677788888888888888888888


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCC
Q 007515          200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM  279 (600)
Q Consensus       200 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~  279 (600)
                      ++.++++.. .+..|.||||+|+..|+.+++++|++.+. ..+..+..|.||||+|+..++.+++++|++.   +..+|.
T Consensus       166 l~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~  240 (437)
T 1n11_A          166 LERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQY---GGSANA  240 (437)
T ss_dssp             HHTTCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTC
T ss_pred             HhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCC
Confidence            888877654 67777788888877777777777777663 4445556666777777777777777766665   334555


Q ss_pred             CCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       280 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      +|..|.||||+|+..|+.+++++|++.|++++..|..|.|||++|..    .++.+++++|++.|++
T Consensus       241 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~  303 (437)
T 1n11_A          241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ----EGHVPVADVLIKHGVM  303 (437)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHHTCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCcc
Confidence            55666666666666666666666666666666655556666555432    2334444555544444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.2e-41  Score=349.37  Aligned_cols=292  Identities=23%  Similarity=0.238  Sum_probs=254.5

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccC-CCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEMVAAEN-EKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n-~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      ..|+|+||.||+.|+.++|++||+.|++ ++.++ ..|.||||+||..|+.++|++|+++++++.. .+..+.+|++.++
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~-~~~~~~~~~~~~~  100 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh-hccCCCchhHHHH
Confidence            3478999999999999999999999988 66665 4599999999999999999999999988754 5889999999999


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccc---------cCCCCCChHHHHHHhcCc
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAW---------KKDLNGHTPLHLSCSKGH  192 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~---------~~d~~g~tpLh~A~~~g~  192 (600)
                      ..+..+++..+++.+.+++..+..|.||||.|+..|+.++++.|++.+.++..         ..+..|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence            99999999999999999988888899999999999999999999998876542         345679999999999999


Q ss_pred             HHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHH
Q 007515          193 LEITRELLK-LDPDLSSLPDNEGRTPLHWAAIKGR----INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL  267 (600)
Q Consensus       193 ~~iv~~Ll~-~~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~L  267 (600)
                      .+++++|++ .|+++.. .|..|.||+|.++..++    .++++.|++.+ .+++.+|..|+||||+|+..++.+++++|
T Consensus       181 ~~~v~~LL~~~gad~n~-~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~L  258 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRL  258 (337)
T ss_dssp             HHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCCCcCc-cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence            999999996 5788755 78999999998877544    35778888876 57788899999999999999999999999


Q ss_pred             HHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       268 l~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      ++..  +.++|.+|.+|+||||+|++.|+.++|++|+++|+|+|..     |||++|..    .++.+++++|+++||++
T Consensus       259 l~~~--~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~----~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          259 LEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARR----NYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             HTST--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHH----TTCHHHHHHHHHTTCCC
T ss_pred             HHhc--CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHH----cCCHHHHHHHHHCcCCC
Confidence            8753  4578999999999999999999999999999999999765     59999654    46788999999999987


Q ss_pred             cC
Q 007515          348 CD  349 (600)
Q Consensus       348 ~~  349 (600)
                      ..
T Consensus       328 d~  329 (337)
T 4g8k_A          328 DF  329 (337)
T ss_dssp             --
T ss_pred             CC
Confidence            53

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-41  Score=335.22  Aligned_cols=266  Identities=24%  Similarity=0.259  Sum_probs=219.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER  123 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  123 (600)
                      +|+|+||.|++.|+.++|++|++.+++.....+..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHc
Confidence            367888888888888888888888877333347778888888888888888888888887764 3477888888888888


Q ss_pred             CCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccC---------CCCCChHHHHHHhcCcHH
Q 007515          124 GRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK---------DLNGHTPLHLSCSKGHLE  194 (600)
Q Consensus       124 g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~tpLh~A~~~g~~~  194 (600)
                      |+.+++++|++++.+++..+..+.||||.|+..|+.+++++|++.+.++....         +..|.||||+|+..|+.+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            88888888888888877777777788888888888888888888877665221         677889999999999999


Q ss_pred             HHHHHHhc-CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHH
Q 007515          195 ITRELLKL-DPDLSSLPDNEGRTPLHWAAIKGR----INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME  269 (600)
Q Consensus       195 iv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~  269 (600)
                      ++++|++. +.++.. .|..|.||||.|+..|+    .++++.|++.+ ..++.+|..|+||||+|+..|+.+++++|++
T Consensus       163 ~v~~Ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          163 VLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCc-cCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            99999987 777654 78889999999999888    88888888876 4677788888999999999999999999988


Q ss_pred             hcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCccccc
Q 007515          270 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN  314 (600)
Q Consensus       270 ~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n  314 (600)
                      ..  +.+++.+|.+|+||||+|+..++.+++++|+++|++++.+|
T Consensus       241 ~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          241 QE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             cc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            32  55688888999999999999999999999999999988876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-40  Score=342.35  Aligned_cols=291  Identities=19%  Similarity=0.225  Sum_probs=256.6

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE   89 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~   89 (600)
                      ..+.|+.|+..||.+.|+.|++.+.+ ++...+..|.||||+||..|+.++|++|++.+++ ++.++..+.+|++.++..
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhc
Confidence            56789999999999999999998765 3344455699999999999999999999999988 888999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccc----------cCCCChHHHHHHhcCCH
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE----------VDGLTTSLHVSAMAGHL  159 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~----------~~~~~t~Lh~A~~~g~~  159 (600)
                      +...++..+++.+.++. ..|..|.|||++|+..|+.+++++|++++++++..          ...|.||||.|+..|+.
T Consensus       103 ~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             TCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             ccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence            99999999999998874 45899999999999999999999999998876532          34567899999999999


Q ss_pred             HHHHHHHhc-CccccccCCCCCChHHHHHHhcCc----HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007515          160 DIVKELLEA-RQEFAWKKDLNGHTPLHLSCSKGH----LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL  234 (600)
Q Consensus       160 ~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll  234 (600)
                      +++++|+++ +.+++ ..|..|.||||.++..++    .+++++|+++|++++. +|..|.||||+|+..|+.++++.|+
T Consensus       182 ~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          182 EVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             HHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            999999976 55554 889999999998876543    4688999999999865 7999999999999999999999999


Q ss_pred             hccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccc
Q 007515          235 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI  313 (600)
Q Consensus       235 ~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~  313 (600)
                      +.....++.+|..|+||||+|+++|+.+++++|++.   ++++|     +.||||+|+..++.++|++|+++||++|..
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~---GAd~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTD-----CGDLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT---SCSST-----TCCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCC-----CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            987788999999999999999999999999999987   44444     457999999999999999999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.9e-41  Score=345.24  Aligned_cols=313  Identities=19%  Similarity=0.233  Sum_probs=268.8

Q ss_pred             cCccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHH
Q 007515            6 INPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHE   85 (600)
Q Consensus         6 ~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~   85 (600)
                      .+.+..+.|+.|+..|+.+.+++++.+..... ...+..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   97 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHH
Confidence            35567889999999999999999998754433 34567789999999999999999999999887 78889999999999


Q ss_pred             HHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHH
Q 007515           86 ACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL  165 (600)
Q Consensus        86 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L  165 (600)
                      |+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++++.+++..+..+.++++.|+..+..+.+...
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            999999999999999988774 4588899999999999999999999999998888888888899999888777777665


Q ss_pred             HhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhccccccc
Q 007515          166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK---GRINIIDEILSLNLQSAE  242 (600)
Q Consensus       166 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~  242 (600)
                      ..             .+++..++..++.+.++.++........ .+..|.||||+|+..   ++.++++.|++.+ ..++
T Consensus       177 ~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~  241 (351)
T 3utm_A          177 FK-------------GHSLLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVN  241 (351)
T ss_dssp             HH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTT
T ss_pred             hc-------------ccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcC
Confidence            53             2467888889999999999987765433 678899999999999   5689999999987 5678


Q ss_pred             cccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHH
Q 007515          243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD  322 (600)
Q Consensus       243 ~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~  322 (600)
                      .+|..|+||||+|+..|+.+++++|++.   +.++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||++
T Consensus       242 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~  318 (351)
T 3utm_A          242 EKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ  318 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence            8899999999999999999999999987   6789999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCcchhhHHHHHHHhcccc
Q 007515          323 VVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       323 ~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      +|        ..+++++|.+.+...
T Consensus       319 ~a--------~~~~~~~l~~~~~~~  335 (351)
T 3utm_A          319 MG--------NEAVQQILSESTPMR  335 (351)
T ss_dssp             HS--------CHHHHHHHHHC----
T ss_pred             hh--------hHHHHHHHHhccccc
Confidence            95        345888888876544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-40  Score=328.55  Aligned_cols=264  Identities=20%  Similarity=0.212  Sum_probs=245.1

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcC
Q 007515           78 KMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG  157 (600)
Q Consensus        78 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g  157 (600)
                      +|+||||.|++.|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++++.+++..+..+.||||.|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            57899999999999999999999999887766888999999999999999999999999999888888999999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCC---------CCCCCCHHHHHHHcCCHH
Q 007515          158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP---------DNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       158 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~tpL~~Aa~~g~~~  228 (600)
                      +.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++.++++....         +..|.||||.|+..|+.+
T Consensus        84 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             CHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            9999999999998876 778999999999999999999999999999876532         778999999999999999


Q ss_pred             HHHHHHhccccccccccccccchhhHhHhcCc----hhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH
Q 007515          229 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ----YEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  304 (600)
Q Consensus       229 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~----~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  304 (600)
                      ++++|++..+...+..+..|+||||+|+..++    .+++++|++.   +.++|.+|..|+||||+|+..++.+++++|+
T Consensus       163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999998667888999999999999999999    8999999987   6678999999999999999999999999999


Q ss_pred             h-cCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccccC
Q 007515          305 K-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  349 (600)
Q Consensus       305 ~-~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~~  349 (600)
                      + .|++++.+|..|.|||++|..    .++.+++++|++.|++...
T Consensus       240 ~~~g~~~~~~~~~g~t~l~~A~~----~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          240 EQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             hccCCCccccCCCCCcHHHHHHH----cCcHHHHHHHHHcCCCCCc
Confidence            7 899999999999999999654    4678999999999998653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.5e-39  Score=319.70  Aligned_cols=257  Identities=22%  Similarity=0.292  Sum_probs=161.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCch----------hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCC
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPE----------MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNR  111 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~----------~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~  111 (600)
                      ...|.|+||+|+..|+.+.+..++..++.          .+..+|..|.||||+||..|+.+++++|++.+.++. ..|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence            45678888888888887666666554321          245566777777777777777777777777766653 3466


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC
Q 007515          112 DNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG  191 (600)
Q Consensus       112 ~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  191 (600)
                      .|.||||+|+..|+.+++++|++++.+++                                  ..|..|+||||+|+..|
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------------------------------~~~~~g~t~L~~A~~~~  136 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVN----------------------------------GVTADWHTPLFNACVSG  136 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSS----------------------------------CCCTTCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCC----------------------------------CCCCCCCCHHHHHHHcC
Confidence            66777777776666666666666655443                                  44556666777777767


Q ss_pred             cHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhc
Q 007515          192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL  271 (600)
Q Consensus       192 ~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  271 (600)
                      +.+++++|++.++++..  +.+|.||||+|+..|+.++++.|++.+ ..++..|..|+||||+|+..|+.+++++|++. 
T Consensus       137 ~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-  212 (285)
T 3d9h_A          137 SWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLES-  212 (285)
T ss_dssp             CHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             HHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-
Confidence            77777777776666542  344677777777777777777777665 34566666777777777777777777777766 


Q ss_pred             ccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHh-ccc
Q 007515          272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA-GAR  346 (600)
Q Consensus       272 ~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~-ga~  346 (600)
                        +.++| .|..|+||||+|+..++.+++++|+++|+|++.+|.+|+||+++|.      +..+++++|++. |++
T Consensus       213 --ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~------~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          213 --GADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP------PESPLAQLFLEREGAS  279 (285)
T ss_dssp             --TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC------TTSHHHHHHHHHC---
T ss_pred             --CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc------CccHHHHHHHHhhccC
Confidence              44455 3788999999999999999999999999999999999999999964      235788888887 554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-40  Score=340.30  Aligned_cols=315  Identities=17%  Similarity=0.201  Sum_probs=219.8

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHH
Q 007515            9 YMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR   88 (600)
Q Consensus         9 ~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~   88 (600)
                      .+...|..++..|+.+.+..+++.....     + .-.++++-+...|+.+++++++..      ..+..|.||||+|+.
T Consensus        36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~g~t~L~~Aa~  103 (373)
T 2fo1_E           36 SSQHSLLEASYDGYIKRQRNELQHYSLY-----P-NPQGYGNGNDFLGDFNHTNLQIPT------EPEPESPIKLHTEAA  103 (373)
T ss_dssp             ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred             ccccccccccCCccccchhhhhhhhccc-----c-CccccCCCCCcccccccccccccc------CCCCCCccHHHHHhc
Confidence            3667788888888888888887655332     1 123566778888999998887654      346789999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccC-CCCCcHHHHHHHhCCHHHHHHHH--------hCCcccccccCCCChHHHHHHhcCCH
Q 007515           89 EGRLNFVKLFVGIDPSVIYKLN-RDNESVLYVACERGRLDVAKQLL--------NYSSLLILEVDGLTTSLHVSAMAGHL  159 (600)
Q Consensus        89 ~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~e~v~~Ll--------~~~~~~~~~~~~~~t~Lh~A~~~g~~  159 (600)
                      .++ ++++.|+..+  +. ..+ ..|.||||+|+..|+.+++++|+        +.+.+++..+..|.||||+|+..|+.
T Consensus       104 ~~~-~~~~~L~~~~--~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~  179 (373)
T 2fo1_E          104 GSY-AITEPITRES--VN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR  179 (373)
T ss_dssp             SSS-CCCSCCSTTT--TT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCc-hHHHHhcccc--cc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChH
Confidence            554 7888876643  32 234 78999999999999988877776        78888888888899999999999999


Q ss_pred             HHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC---CCCCCCCCCCCCCHHHHHHHcC---CHHHHHHH
Q 007515          160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD---PDLSSLPDNEGRTPLHWAAIKG---RINIIDEI  233 (600)
Q Consensus       160 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~---~~~~~~~d~~g~tpL~~Aa~~g---~~~~v~~L  233 (600)
                      +++++|++.+.++. ..|..|.||||+|+..|+.+++++|++.+   .++.. .|..|.||||+|+..|   +.++++.|
T Consensus       180 ~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~~~~v~~L  257 (373)
T 2fo1_E          180 RLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLL  257 (373)
T ss_dssp             HHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             HHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence            99999999998886 77889999999999999999999999987   56544 7889999999999998   89999999


Q ss_pred             Hhcccccc-------ccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhc
Q 007515          234 LSLNLQSA-------EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL  306 (600)
Q Consensus       234 l~~~~~~~-------~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  306 (600)
                      ++.+.+..       ...|..|.||||+|+..|+.+++++|++..  +.++|.+|.+|+||||+|+..|+.+++++|+++
T Consensus       258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  335 (373)
T 2fo1_E          258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ  335 (373)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99875422       135678999999999999999999999873  257899999999999999999999999999999


Q ss_pred             CCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       307 gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      |++++.+|..|.|||++|..    .++.+++++|++.|+++
T Consensus       336 gad~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          336 GASVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred             CCCccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence            99999999999999999654    57889999999999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8e-39  Score=320.25  Aligned_cols=243  Identities=21%  Similarity=0.270  Sum_probs=149.7

Q ss_pred             CccccHHHHHHHHcCCHHHHHHHHhhchhh---------hhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCC
Q 007515            7 NPYMERHLFETILRGDTQAFLSLIQQDEAK---------IKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENE   77 (600)
Q Consensus         7 ~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~---------l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~   77 (600)
                      .++....+|.|+..|+.+.+.+++...+..         .....+..|.||||+||..|+.++|++|++.+.+ ++.+|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCC
Confidence            356788999999999999999976654331         1234577899999999999999999999999887 889999


Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcC
Q 007515           78 KMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG  157 (600)
Q Consensus        78 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g  157 (600)
                      .|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++++.+++.... +.||||.|+..|
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-g~t~L~~A~~~g  168 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRG  168 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCT-TSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHcC
Confidence            99999999999999999999999998874 4588999999999999999999999998877653322 445666666666


Q ss_pred             CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 007515          158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN  237 (600)
Q Consensus       158 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~  237 (600)
                      +.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++.|+++.  .+..|.||||+|+..|+.+++++|++.+
T Consensus       169 ~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          169 HVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             CHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            6666666665555544 445555555555555555555555555555543  2445555555555555555555555543


Q ss_pred             ccccccccccccchhhHhH
Q 007515          238 LQSAEMRTIHGETVLHLTV  256 (600)
Q Consensus       238 ~~~~~~~~~~g~t~Lh~Av  256 (600)
                       .+++.+|..|+||||+|+
T Consensus       246 -ad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          246 -ADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             -CCTTCCCTTSCCGGGGSC
T ss_pred             -CCCCCcCCCCCCHHHHhc
Confidence             233344444444444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.8e-39  Score=331.97  Aligned_cols=279  Identities=18%  Similarity=0.159  Sum_probs=219.0

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 007515           39 QTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLY  118 (600)
Q Consensus        39 ~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  118 (600)
                      ...|..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++.+++..   +..|.||||
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L~   89 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIH   89 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHHH
Confidence            34567799999999999999999999999887 88999999999999999999999999999988542   358999999


Q ss_pred             HHHHhCCHHHHHHHHhC----CcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC--c
Q 007515          119 VACERGRLDVAKQLLNY----SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--H  192 (600)
Q Consensus       119 ~A~~~g~~e~v~~Ll~~----~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~  192 (600)
                      +|+..|+.+++++|++.    +.+++......          ....       .........|..|.||||+|+..|  +
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~----------~~~~-------~~~~~~~~~~~~g~t~L~~A~~~g~~~  152 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNEC----------DERE-------VNEIGSHVKHCKGQTALHWCVGLGPEY  152 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCC----------CCCC-------EEEETTEEEEESCCCHHHHHHHSCGGG
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhc----------chHh-------hhhhccccCCCCCCCHHHHHHHcCCch
Confidence            99999999999999997    44332100000          0000       000011235677889999999999  8


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc----cccccccccchhhHhHhcCchhHHHHHH
Q 007515          193 LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS----AEMRTIHGETVLHLTVKNNQYEAVKYLM  268 (600)
Q Consensus       193 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~----~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll  268 (600)
                      .+++++|++.|+++.. .|..|.||||+|+..|+.+++++|++.+++.    ++..|..|+||||+|+..|+.+++++|+
T Consensus       153 ~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  231 (364)
T 3ljn_A          153 LEMIKILVQLGASPTA-KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV  231 (364)
T ss_dssp             HHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            9999999999888765 7888999999999999999999999877542    6778888999999999999999999998


Q ss_pred             HhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCccc------------ccCCCCCHHHHHhhhcCCcchhhH
Q 007515          269 ETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA------------INRKGYTALDVVESDASNSGALQI  336 (600)
Q Consensus       269 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~------------~n~~G~T~l~~a~~~a~~~~~~~i  336 (600)
                      +.   +.++|.+|.+|.||||+|+..|+.+++++|+++|++++.            .+..|+||+..    +...++.+.
T Consensus       232 ~~---gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----aa~~~~~~~  304 (364)
T 3ljn_A          232 EM---GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP----AAADPSKQE  304 (364)
T ss_dssp             TT---TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC----SSCCHHHHH
T ss_pred             Hc---CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh----hhhccCHHH
Confidence            87   667888999999999999999999999999988877644            56678888887    445555555


Q ss_pred             HHHHHHhccc
Q 007515          337 VPALEEAGAR  346 (600)
Q Consensus       337 ~~~L~~~ga~  346 (600)
                      +..|+..+++
T Consensus       305 v~~ll~~~~~  314 (364)
T 3ljn_A          305 VLQLLQEKLD  314 (364)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555444444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-39  Score=333.47  Aligned_cols=280  Identities=17%  Similarity=0.176  Sum_probs=230.3

Q ss_pred             HHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccC-CCCCcHhHHHHHcCCHH
Q 007515           15 FETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAEN-EKMETPLHEACREGRLN   93 (600)
Q Consensus        15 ~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n-~~g~TpLh~Aa~~g~~~   93 (600)
                      ..+...|+++.++.++.       ...+..|.|+||+||..|+ +++++|++.   .++..| ..|.||||+||..|+.+
T Consensus        71 ~~~~~~g~~~~~~~~~~-------~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~  139 (373)
T 2fo1_E           71 NGNDFLGDFNHTNLQIP-------TEPEPESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAE  139 (373)
T ss_dssp             ------------------------------CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCS
T ss_pred             CCCCccccccccccccc-------cCCCCCCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHCCCHH
Confidence            34455566666655533       2346789999999999554 788877653   366677 78999999999999998


Q ss_pred             HHHHHH--------hCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHH
Q 007515           94 FVKLFV--------GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL  165 (600)
Q Consensus        94 iv~~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L  165 (600)
                      ++++|+        +.+.++. ..|..|.||||+|+..|+.+++++|++++++++..+..+.||||.|+..|+.+++++|
T Consensus       140 ~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~L  218 (373)
T 2fo1_E          140 KSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM  218 (373)
T ss_dssp             CCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            888776        6777764 4589999999999999999999999999999998888899999999999999999999


Q ss_pred             HhcC---ccccccCCCCCChHHHHHHhcC---cHHHHHHHHhcCCCCCC-------CCCCCCCCHHHHHHHcCCHHHHHH
Q 007515          166 LEAR---QEFAWKKDLNGHTPLHLSCSKG---HLEITRELLKLDPDLSS-------LPDNEGRTPLHWAAIKGRINIIDE  232 (600)
Q Consensus       166 l~~~---~~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~tpL~~Aa~~g~~~~v~~  232 (600)
                      ++.+   .++. ..|..|.||||+|+..+   +.+++++|++.|+++..       ..|..|.||||+|+..|+.+++++
T Consensus       219 l~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  297 (373)
T 2fo1_E          219 LNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY  297 (373)
T ss_dssp             TTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred             HhcCccccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence            9987   3444 77999999999999998   89999999999998754       256789999999999999999999


Q ss_pred             HHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCc
Q 007515          233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV  310 (600)
Q Consensus       233 Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~  310 (600)
                      |++.++..++.+|..|+||||+|+..|+.+++++|++.   +.+++.+|.+|+||||+|+..|+.+++++|+++|++.
T Consensus       298 Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99998788999999999999999999999999999997   6789999999999999999999999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-38  Score=328.14  Aligned_cols=254  Identities=22%  Similarity=0.285  Sum_probs=186.6

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHH
Q 007515           72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLH  151 (600)
Q Consensus        72 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh  151 (600)
                      .+..|..|.||||+||..|+.++|++|++.++++. ..|..|.||||+|+..|+.+++++|++++.+.+  ...+.||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC--CBTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCHHH
Confidence            34556677888888888888888888888776653 447777777777777777777777777776432  224455666


Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC--CHHH
Q 007515          152 VSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINI  229 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~~~  229 (600)
                      .|+..|+.+++++|++.+.+..       ..+-..........+      ...+ ....|..|.||||+|+..|  +.++
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~-------~~~~~~~~~~~~~~~------~~~~-~~~~~~~g~t~L~~A~~~g~~~~~~  155 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERG-------QMPESLLNECDEREV------NEIG-SHVKHCKGQTALHWCVGLGPEYLEM  155 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-------CCHHHHHTCCCCCCE------EEET-TEEEEESCCCHHHHHHHSCGGGHHH
T ss_pred             HHHHcCCHHHHHHHHHhccccC-------CCHHHHHhhcchHhh------hhhc-cccCCCCCCCHHHHHHHcCCchHHH
Confidence            6666666666666665522210       001000000000000      0000 1125678999999999999  9999


Q ss_pred             HHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhccc--ccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC
Q 007515          230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI--TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  307 (600)
Q Consensus       230 v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~--~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  307 (600)
                      +++|++.+ ..++..|..|+||||+|+..|+.+++++|++....  ...+|.+|..|+||||+|+..|+.+++++|+++|
T Consensus       156 v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  234 (364)
T 3ljn_A          156 IKILVQLG-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG  234 (364)
T ss_dssp             HHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred             HHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            99999987 57788899999999999999999999999998432  2238999999999999999999999999999999


Q ss_pred             CCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       308 ad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      +|+|.+|..|.|||++|..    .++.+++++|++.|++.
T Consensus       235 ad~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          235 IDVNMEDNEHTVPLYLSVR----AAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHH----TCCHHHHHHHHHHSCHH
T ss_pred             CCCCCCCCCCCCHHHHHHH----hChHHHHHHHHHcCCch
Confidence            9999999999999999654    47889999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.3e-37  Score=320.30  Aligned_cols=284  Identities=23%  Similarity=0.216  Sum_probs=255.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      +..+.|+||.||+.|+.+.|+.|+...+..++.+|..|.||||+|+..|+.++|++|++.++++. ..+..|.||||+|+
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   99 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHHH
Confidence            34578999999999999999999998666688999999999999999999999999999998874 45889999999999


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHh
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      ..|+.+++++|++++.+++..+..+.||||.|+..|+.+++++|++.+.++. ..+..|.||+++|+..+..+.+.+...
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~  178 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFK  178 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhc
Confidence            9999999999999999998888889999999999999999999999998876 778899999999999888888877664


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhc---CchhHHHHHHHhcccccccC
Q 007515          202 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN---NQYEAVKYLMETLNITKLAN  278 (600)
Q Consensus       202 ~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~---~~~~iv~~Ll~~~~~~~~~n  278 (600)
                                   ..+++.++..++.+.++.++.... .....+..|.||||+|+..   +..+++++|++.   +.++|
T Consensus       179 -------------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~---g~~~~  241 (351)
T 3utm_A          179 -------------GHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRK---GANVN  241 (351)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT---TCCTT
T ss_pred             -------------ccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc---CCCcC
Confidence                         357888999999999999998764 3444677899999999999   668999999987   66789


Q ss_pred             CCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          279 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       279 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      .+|.+|+||||+|+..|+.+++++|+++|+++|.+|..|.|||++|..    .++.+++++|++.|+++.
T Consensus       242 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~  307 (351)
T 3utm_A          242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPS  307 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999654    567899999999998754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.4e-37  Score=302.87  Aligned_cols=227  Identities=23%  Similarity=0.271  Sum_probs=104.7

Q ss_pred             hccCCCCCcHhHHHHHcC-------------CHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCccc
Q 007515           73 AAENEKMETPLHEACREG-------------RLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL  139 (600)
Q Consensus        73 ~~~n~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~  139 (600)
                      +.+|..|.||||+|+..|             +.+++++|++.++++....|..|.||||+|+..|+.+++++|++++.++
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   83 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA   83 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            344445555555555444             6666666666666655555566666666666666666666666666555


Q ss_pred             ccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 007515          140 ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH  219 (600)
Q Consensus       140 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~  219 (600)
                      +..+..+.||||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.|+++.. .|..|.||||
T Consensus        84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~  162 (253)
T 1yyh_A           84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALH  162 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC-BCTTSCBHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC-cCCCCCCHHH
Confidence            544444555555555555555555555555433334555566666666666666666666665555543 4555555555


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHH
Q 007515          220 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTM  299 (600)
Q Consensus       220 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~i  299 (600)
                      +|+..|+.+++++|++.+ ..++.+|..|+||||+|+..|+.+++++|++.   +.+++.+|..|+||||+|+..|+.++
T Consensus       163 ~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCHHH
Confidence            555555555555555544 23444444455555555555555555555444   33344455555555555555555555


Q ss_pred             HHHHH
Q 007515          300 VIYLL  304 (600)
Q Consensus       300 v~~Ll  304 (600)
                      +++|.
T Consensus       239 ~~~l~  243 (253)
T 1yyh_A          239 VRLLD  243 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.9e-37  Score=304.24  Aligned_cols=261  Identities=19%  Similarity=0.167  Sum_probs=186.2

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHhCch--hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 007515           39 QTVPGSLNTILHLTARFGHEELASEILKLCPE--MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESV  116 (600)
Q Consensus        39 ~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~--~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  116 (600)
                      ...+..|.||||+||..|+.++|++|++.++.  .++.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCH
Confidence            34678899999999999999999999998665  478899999999999999999999999999998874 458899999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHH-
Q 007515          117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI-  195 (600)
Q Consensus       117 L~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i-  195 (600)
                      ||+|+..|+.+++++|++++..........  .+                .....   .....+.++++.++..+.... 
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--~~----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~  140 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDT--YL----------------TQSQD---CTPDTSHAPAAVDSQPNPENEE  140 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------------------------
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHH--Hh----------------hcccc---cCcchhcchhhhccccccchhh
Confidence            999999999999999999887643221110  00                00000   123345667777766554433 


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-ccccchhhHhHhcCchhHHHHHHHhcccc
Q 007515          196 TRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRT-IHGETVLHLTVKNNQYEAVKYLMETLNIT  274 (600)
Q Consensus       196 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  274 (600)
                      ...+...+.++.. .+..|.||||+|+..|+.+++++|++.+. .++..+ ..|+||||+|+..|+.+++++|++.   +
T Consensus       141 ~~~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---g  215 (282)
T 1oy3_D          141 EPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---G  215 (282)
T ss_dssp             ---CCCGGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---T
T ss_pred             hhhhhhhhhcCCC-cCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---C
Confidence            3333344444433 68889999999999999999999998874 455555 4599999999999999999999987   6


Q ss_pred             cccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhh
Q 007515          275 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  326 (600)
Q Consensus       275 ~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~  326 (600)
                      .++|.+|..|+||||+|+..++.+++++|+++|++++.+|.+|.||++++..
T Consensus       216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            6789999999999999999999999999999999999999999999999754

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.7e-36  Score=299.74  Aligned_cols=267  Identities=18%  Similarity=0.143  Sum_probs=189.4

Q ss_pred             ccccCccccHHHHHHHHcCCHHHHHHHHhhchhh-hhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCc
Q 007515            3 IEAINPYMERHLFETILRGDTQAFLSLIQQDEAK-IKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMET   81 (600)
Q Consensus         3 ~~~~~~~~~~~L~~A~~~gd~~~~~~ll~~~~~~-l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~T   81 (600)
                      ++.+++.+.++|+.|+..|+.+.++.+++.+... .....+..|.||||+||..|+.++|++|++.+.+ ++.+|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            3567889999999999999999999999877552 1345677899999999999999999999999988 7899999999


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHH
Q 007515           82 PLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDI  161 (600)
Q Consensus        82 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (600)
                      |||+|+..|+.+++++|++.++........   +.+                ....  ......+.++++.+...+....
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~~----------------~~~~--~~~~~~~~~~~~~~~~~~~~~~  139 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASD---TYL----------------TQSQ--DCTPDTSHAPAAVDSQPNPENE  139 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHH---HHh----------------hccc--ccCcchhcchhhhccccccchh
Confidence            999999999999999999988765321110   000                0000  0111223345655555544433


Q ss_pred             HHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 007515          162 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA  241 (600)
Q Consensus       162 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~  241 (600)
                      ...++.......+..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+..|+.+++++|++.+ ..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~  218 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADP  218 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCC
Confidence            3333333222334778899999999999999999999999999987744456999999999999999999999986 577


Q ss_pred             ccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC
Q 007515          242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  295 (600)
Q Consensus       242 ~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  295 (600)
                      +.+|..|+||||+|+.+++.+++++|++.   +..++.+|.+|.|||++|....
T Consensus       219 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          219 TARMYGGRTPLGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHT---TCCCCCCC--------------
T ss_pred             cccccCCCCHHHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCcc
Confidence            88999999999999999999999999988   6779999999999999997655

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.7e-36  Score=288.63  Aligned_cols=226  Identities=25%  Similarity=0.311  Sum_probs=130.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER  123 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  123 (600)
                      .++|+||.|+..|+.+.++++++.++..++..|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHHHHc
Confidence            356666666666666666666666665556666666666666666666666666666655542 2345555555555555


Q ss_pred             CCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC
Q 007515          124 GRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD  203 (600)
Q Consensus       124 g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  203 (600)
                      |+.+++++|++++.+++                                  ..|..|.||||+|+..|+.+++++|++.+
T Consensus        84 ~~~~~v~~Ll~~g~~~~----------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  129 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVN----------------------------------AVNQNGCTPLHYAASKNRHEIAVMLLEGG  129 (231)
T ss_dssp             TCHHHHHHHHHTTCCTT----------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCCCC----------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            55555555555444322                                  33445555555555555555555555555


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCC
Q 007515          204 PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND  283 (600)
Q Consensus       204 ~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~  283 (600)
                      .++.. .+..|.||||.|+..|+.++++.|++.+                                     .+++.+|.+
T Consensus       130 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-------------------------------------~~~~~~~~~  171 (231)
T 3aji_A          130 ANPDA-KDHYDATAMHRAAAKGNLKMVHILLFYK-------------------------------------ASTNIQDTE  171 (231)
T ss_dssp             CCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-------------------------------------CCSCCCCTT
T ss_pred             CCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcC-------------------------------------CCccccCCC
Confidence            55433 4445555555555555555555554432                                     234555666


Q ss_pred             CChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       284 G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      |+||||+|+..++.+++++|+++|++++.+|..|.||+++|    ...++.+++++|.++|++
T Consensus       172 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A----~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA----KGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS----CHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH----HhhHHHHHHHHHcccccc
Confidence            66666666666666666666666666666666666666663    334455666666666553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.7e-36  Score=291.86  Aligned_cols=165  Identities=22%  Similarity=0.305  Sum_probs=81.1

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHh---CchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 007515           41 VPGSLNTILHLTARFGHEELASEILKL---CPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVL  117 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~---~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  117 (600)
                      .|..|+||||+||..|+.+++++|++.   .+..++..|..|.||||+|+..|+.+++++|++.++++. ..+..|.|||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l   83 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAA   83 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHH
Confidence            345555666666666666555555551   222245555555555555555555555555555554442 2244555555


Q ss_pred             HHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHH
Q 007515          118 YVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR  197 (600)
Q Consensus       118 ~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~  197 (600)
                      |+|+..|+.+++++|++.+....                             .++ ...|..|.||||+|+..|+.++++
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~-----------------------------~~~-~~~~~~g~t~L~~A~~~~~~~~~~  133 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGT-----------------------------LDL-EARNYDGLTALHVAVNTECQETVQ  133 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTS-----------------------------CCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcc-----------------------------ccc-cccCcCCCcHHHHHHHcCCHHHHH
Confidence            55555555555555554443100                             011 133444555555555555555555


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007515          198 ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL  236 (600)
Q Consensus       198 ~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  236 (600)
                      +|++.|+++....+..|.||||+|+..|+.++++.|++.
T Consensus       134 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (241)
T 1k1a_A          134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH  172 (241)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            555555554432224455555555555555554444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-35  Score=286.50  Aligned_cols=231  Identities=24%  Similarity=0.360  Sum_probs=143.2

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHH
Q 007515           72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLH  151 (600)
Q Consensus        72 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh  151 (600)
                      ++.+|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++++.+++..         
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---------   73 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK---------   73 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC---------
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC---------
Confidence            45566777777777777777777777777766653 33566777777777777777777776666555444         


Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 007515          152 VSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID  231 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~  231 (600)
                                               |..|.||||+|+..|+.+++++|++.++......+..|.||||.|+..|+.++++
T Consensus        74 -------------------------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  128 (237)
T 3b7b_A           74 -------------------------DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK  128 (237)
T ss_dssp             -------------------------CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             -------------------------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHH
Confidence                                     4445555555555555555555555552222234455555555555555555555


Q ss_pred             HHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          232 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       232 ~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                      +|++.+ ..++.++..|.||||+|+..|+.+++++|++.   +.+++.+|..|+||||+|+..++.+++++|+++|++++
T Consensus       129 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          129 LLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             HHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence            555544 23444455555666666666666666666554   44567777888888888888888888888888888888


Q ss_pred             cccCCCCCHHHHHhhhcCCcchhhHHHHHH
Q 007515          312 AINRKGYTALDVVESDASNSGALQIVPALE  341 (600)
Q Consensus       312 ~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~  341 (600)
                      .+|.+|.||+++|..........++++.|.
T Consensus       205 ~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~  234 (237)
T 3b7b_A          205 LKNKEGETPLQCASLNSQVWSALQMSKALQ  234 (237)
T ss_dssp             CCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888543322222234444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4e-35  Score=284.75  Aligned_cols=225  Identities=24%  Similarity=0.302  Sum_probs=171.0

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      ..+..|.||||+||..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   83 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHL   83 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHH
Confidence            4577899999999999999999999999887 78899999999999999999999999999998764 458899999999


Q ss_pred             HHHhCCHHHHHHHHhCC-cccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHH
Q 007515          120 ACERGRLDVAKQLLNYS-SLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE  198 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~-~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  198 (600)
                      |+..|+.+++++|++++ .+++..+..+.||||.|+..++.+++++|++.+.++. ..|..|.||||+|+..|+.+++++
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCCCHHHHHH
Confidence            99999999999999987 5555555556667777777777777777777666654 556667777777777777777777


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHH
Q 007515          199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME  269 (600)
Q Consensus       199 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~  269 (600)
                      |++.|+++.. .|..|.||||+|+..|+.++++.|++.+ .+.+.+|..|+||||+|+.+++.+.+..+++
T Consensus       163 Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          163 LLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHcCCCCCC-cCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7776666544 5666666777766666666666666655 3445556666666666666666554444443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.8e-35  Score=287.74  Aligned_cols=233  Identities=25%  Similarity=0.274  Sum_probs=173.6

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHH
Q 007515           73 AAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHV  152 (600)
Q Consensus        73 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~  152 (600)
                      +.+|..|+||||+||..|+.+++++|++..                              .+.+.+++..+..|.||||.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~------------------------------~~~~~~~~~~~~~g~t~L~~   52 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLF------------------------------QQGGRELDIYNNLRQTPLHL   52 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHH------------------------------HHTTCCSCCCCTTSCCHHHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHH------------------------------HhcCCCCCcccccCCCHHHH
Confidence            445566666666666666666666665410                              01333333333334444444


Q ss_pred             HHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCC----CCCCCCCCCCCCHHHHHHHcCCHH
Q 007515          153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP----DLSSLPDNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       153 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~tpL~~Aa~~g~~~  228 (600)
                      |+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++.++    ++. ..+..|.||||+|+..|+.+
T Consensus        53 A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~  130 (241)
T 1k1a_A           53 AVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQE  130 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHH
Confidence            444455555555555444443 557788899999999999999999999887    443 37889999999999999999


Q ss_pred             HHHHHHhcccccccccc-ccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC
Q 007515          229 IIDEILSLNLQSAEMRT-IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  307 (600)
Q Consensus       229 ~v~~Ll~~~~~~~~~~~-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  307 (600)
                      +++.|++.+. ..+..+ ..|.||||+|+..++.+++++|++.   +.++|.+|.+|+||||+|+..++.+++++|+++|
T Consensus       131 ~~~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          131 TVQLLLERGA-DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             HHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999885 455555 7899999999999999999999998   6779999999999999999999999999999999


Q ss_pred             CCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcc
Q 007515          308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA  345 (600)
Q Consensus       308 ad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga  345 (600)
                      ++++.+|..|.||+++    +...++.++++.|.+.++
T Consensus       207 a~~~~~~~~g~tpl~~----A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          207 ADSSLKNCHNDTPLMV----ARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CCTTCCCTTSCCTTTT----CSSHHHHHHHTC------
T ss_pred             CCCCCcCCCCCCHHHH----HHhcCcHHHHhhhccCCC
Confidence            9999999999999999    566788889888876553

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.7e-35  Score=280.51  Aligned_cols=220  Identities=19%  Similarity=0.221  Sum_probs=157.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC--cccccccCCCCCcHHHHHHH
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGID--PSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~  122 (600)
                      |+||||.||..|+.++|++|++.++......|..|.||||+|+..|+.+++++|++.+  +++....+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999998877778999999999999999999999999988  55555467888999999999


Q ss_pred             hCCHHHHHHHHhCC--cccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHH
Q 007515          123 RGRLDVAKQLLNYS--SLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL  200 (600)
Q Consensus       123 ~g~~e~v~~Ll~~~--~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  200 (600)
                      .|+.+++++|++++  .+++..+..+.||||.|+..|+.+++++|++.+.++. ..|..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999988887  5555555556666666666666666666666666554 55666666666666666666666666


Q ss_pred             hcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHH
Q 007515          201 KLD-PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME  269 (600)
Q Consensus       201 ~~~-~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~  269 (600)
                      +.+ .++ ...|..|+||||+|+..|+.+++++|++..+.+.+.+|..|+||||+|+..   ++.++|++
T Consensus       161 ~~g~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          161 GLGKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             TTTCCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             hcCcccc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            666 443 335666666666666666666666666333345556666666666666543   34444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8e-35  Score=281.46  Aligned_cols=225  Identities=22%  Similarity=0.241  Sum_probs=186.5

Q ss_pred             ccccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHH
Q 007515            8 PYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEAC   87 (600)
Q Consensus         8 ~~~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa   87 (600)
                      ...+..|+.|+..|+.+.++++++.++.. ....+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHH
Confidence            34667899999999999999999988764 345678899999999999999999999999887 8889999999999999


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHh
Q 007515           88 REGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE  167 (600)
Q Consensus        88 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~  167 (600)
                      ..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++++.+++..+..+.||||.|+..|+.+++++|++
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999998874 458899999999999999999999999988877666667777777777777777777777


Q ss_pred             cCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 007515          168 ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN  237 (600)
Q Consensus       168 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~  237 (600)
                      .+.++. .+|..|.||||+|+..|+.+++++|+++|+++.. +|..|.||||+|+..++.+++++|.+.+
T Consensus       161 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          161 YKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI-ENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             TTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             cCCCcc-ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            776665 5667777777777777777777777777777643 6777777777777777777777776654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-35  Score=289.68  Aligned_cols=227  Identities=17%  Similarity=0.151  Sum_probs=170.7

Q ss_pred             CCCCCCcHHHHHHHhC-------------CHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCccccc
Q 007515           41 VPGSLNTILHLTARFG-------------HEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIY  107 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g-------------~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~  107 (600)
                      .|..|.||||+|+..|             +.+++++|++.+++.....|..|.||||+|+..|+.+++++|++.++++. 
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-   84 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-   84 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            4667889999999877             88999999999988667778999999999999999999999999988774 


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHhCCc-ccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHH
Q 007515          108 KLNRDNESVLYVACERGRLDVAKQLLNYSS-LLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHL  186 (600)
Q Consensus       108 ~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~-~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  186 (600)
                      ..+..|.||||+|+..|+.+++++|++++. +++..+..+.||||.|+..|+.++++.|++.+.++. ..|..|+||||+
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~  163 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHW  163 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSCBHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCCCHHHH
Confidence            458889999999999999999999999887 677777778889999999999999999999888876 778889999999


Q ss_pred             HHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHH
Q 007515          187 SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY  266 (600)
Q Consensus       187 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~  266 (600)
                      |+..|+.+++++|++.|+++.. .|..|.||||+|+..|+.++++.|++.+ .+.+.+|..|+||||+|+++|+.+++++
T Consensus       164 A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          164 AAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999998765 7888999999999999999999999987 4677888899999999999999999999


Q ss_pred             HHHhc
Q 007515          267 LMETL  271 (600)
Q Consensus       267 Ll~~~  271 (600)
                      |.+..
T Consensus       242 l~~~~  246 (253)
T 1yyh_A          242 LDLEH  246 (253)
T ss_dssp             HHC--
T ss_pred             HHHHh
Confidence            98753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.4e-34  Score=278.96  Aligned_cols=222  Identities=25%  Similarity=0.317  Sum_probs=163.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC
Q 007515           79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH  158 (600)
Q Consensus        79 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (600)
                      |+||||+|++.|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|++++++.+.                 
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------   64 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL-----------------   64 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG-----------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-----------------
Confidence            789999999999999999999988888777788888888888888888888888888743321                 


Q ss_pred             HHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007515          159 LDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD--PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL  236 (600)
Q Consensus       159 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  236 (600)
                                    ....|..|+||||+|+..|+.+++++|++.+  +++.. .+..|.||||.|+..|+.+++++|++.
T Consensus        65 --------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~  129 (228)
T 2dzn_A           65 --------------DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIEN  129 (228)
T ss_dssp             --------------GGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             --------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHc
Confidence                          1123555666666666666666666666665  44433 556666666666666666666666665


Q ss_pred             cccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH-hcCCCcccccC
Q 007515          237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINR  315 (600)
Q Consensus       237 ~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~gad~n~~n~  315 (600)
                      + ...+.+|..|+||||+|+..|+.+++++|++..  ..++|.+|.+|+||||+|+..++.+++++|+ +.|+|++.+|.
T Consensus       130 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          130 G-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             T-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT--CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             C-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC--cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            4 345566666777777777777777777776652  1457888899999999999999999999999 88999999999


Q ss_pred             CCCCHHHHHhhhcCCcchhhHHHHHHH
Q 007515          316 KGYTALDVVESDASNSGALQIVPALEE  342 (600)
Q Consensus       316 ~G~T~l~~a~~~a~~~~~~~i~~~L~~  342 (600)
                      +|.||+++|..       .++.++|++
T Consensus       207 ~g~t~l~~A~~-------~~~~~~l~~  226 (228)
T 2dzn_A          207 KGAKAEDVALN-------EQVKKFFLN  226 (228)
T ss_dssp             TSCBGGGGCSS-------TTHHHHHHT
T ss_pred             CCCcHHHHHHH-------HHHHHHHHh
Confidence            99999998532       246666654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=274.66  Aligned_cols=232  Identities=23%  Similarity=0.254  Sum_probs=146.5

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 007515           41 VPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVA  120 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  120 (600)
                      .+..|.|+||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+++.....+..|.|||++|
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            456678888888888888888888888776 7777888888888888888888888888888877666666678888888


Q ss_pred             HHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCc-HHHHHHH
Q 007515          121 CERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-LEITREL  199 (600)
Q Consensus       121 ~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~iv~~L  199 (600)
                      +..|+.+++++|++.+.+++..+..+.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..++ .+++++|
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            88888888888877776665444444455555555555555555555444443 344445555555553333 4444555


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCC
Q 007515          200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM  279 (600)
Q Consensus       200 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~  279 (600)
                      ++.++++....+.                                  .|.||||+|+.+++.+++++|++.   +.+++.
T Consensus       163 ~~~~~~~~~~~~~----------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~  205 (240)
T 3eu9_A          163 LTFNVSVNLGDKY----------------------------------HKNTALHWAVLAGNTTVISLLLEA---GANVDA  205 (240)
T ss_dssp             HHTTCCTTCCCTT----------------------------------TCCCHHHHHHHHTCHHHHHHHHHH---TCCTTC
T ss_pred             HhcCCCcchhhcc----------------------------------CCCcHHHHHHHcCCHHHHHHHHHc---CCCCCC
Confidence            5554444332122                                  444555555555555555555544   334555


Q ss_pred             CCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       280 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                      +|..|.||||+|+..++.+++++|++.|++..
T Consensus       206 ~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          206 QNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            66666666666666666666666666665544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-34  Score=290.77  Aligned_cols=260  Identities=21%  Similarity=0.222  Sum_probs=216.6

Q ss_pred             HHHHhCCHHHHHHHHHhCchh--------hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 007515           51 LTARFGHEELASEILKLCPEM--------VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        51 ~Aa~~g~~e~v~~Ll~~~~~~--------l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  122 (600)
                      .++..++.+.++.++......        ....+..|.||||.||..|+.++|++|++.++++. ..+..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH
Confidence            567788888888888765431        11224467899999999999999999999998864 458899999999999


Q ss_pred             hCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhc
Q 007515          123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL  202 (600)
Q Consensus       123 ~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  202 (600)
                      .|+.+++++|++++.+++..+..|.||||+|+..|+.+++++|++.+.++. ..|..|.||||+|+..++.++++.++..
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            999999999999999988888888899999999999999999999988876 7788999999999999999999988865


Q ss_pred             C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCC
Q 007515          203 D-PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD  281 (600)
Q Consensus       203 ~-~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d  281 (600)
                      . .+... .+..+.+++        ...+..++..+.......+..|.||||+|+..|+.+++++|++.   +.++|.+|
T Consensus       162 ~~~~~~~-~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~d  229 (299)
T 1s70_B          162 QGVDIEA-ARKEEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKD  229 (299)
T ss_dssp             HTCCHHH-HHHHHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCC
T ss_pred             cCCCchh-hhhhhhhHH--------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCcC
Confidence            3 22211 111122222        23455666666666666778999999999999999999999987   67799999


Q ss_pred             CCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          282 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       282 ~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      .+|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999996

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=288.21  Aligned_cols=216  Identities=25%  Similarity=0.303  Sum_probs=140.6

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhCchh-------hhccCCCCCcHhHHHHHcCCH-HHHHHHHhCCcccccccCCC
Q 007515           41 VPGSLNTILHLTARFGHEELASEILKLCPEM-------VAAENEKMETPLHEACREGRL-NFVKLFVGIDPSVIYKLNRD  112 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~-------l~~~n~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~~  112 (600)
                      .|..+.++|+.||..|+.++|++|++.+...       ++..+..|.||||.|+..++. .+++.|++.|.++. ..|.+
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT-CCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCCC
Confidence            3555678888888888888888888876542       455667788888888877765 47788888887764 44778


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCc
Q 007515          113 NESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH  192 (600)
Q Consensus       113 g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  192 (600)
                      |.||||+|+..|+.+++++|++.+++++..+..+.||+|.|+..++.++++.|++.+.+++ .+|..|+||||+||..|+
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCC
Confidence            8888888888888888888888888777777777777777777777777777777777765 667777777777777777


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCc
Q 007515          193 LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ  260 (600)
Q Consensus       193 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~  260 (600)
                      .+++++|++.|++++. .+..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+++++
T Consensus       165 ~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          165 HELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCc
Confidence            7777777777777654 6777777777777777777777777765 4566677777777777766654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-35  Score=289.97  Aligned_cols=237  Identities=20%  Similarity=0.298  Sum_probs=156.3

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHH
Q 007515           74 AENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVS  153 (600)
Q Consensus        74 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A  153 (600)
                      .+|.++.+||+.||+.|+.++|++|++.++.......                          ...+..+..+.||||.|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~--------------------------~~~~~~~~~~~t~L~~a   59 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE--------------------------DTVSAADPEFCHPLCQC   59 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc--------------------------ccccccCccCCCHHHHH
Confidence            4566677888888888888888888877655321100                          00111223344566666


Q ss_pred             HhcCCH-HHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 007515          154 AMAGHL-DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE  232 (600)
Q Consensus       154 ~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~  232 (600)
                      +..++. .+++.|++.+.+++ ..|.+|+||||+||..|+.+++++|++.++++.. .+.+|.||+|.|+..++.++++.
T Consensus        60 ~~~~~~~~~v~~Ll~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~  137 (269)
T 4b93_B           60 PKCAPAQKRLAKVPASGLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKC  137 (269)
T ss_dssp             ---------------CCCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHH
Confidence            665554 36677777776665 6778888888888888888888888888888755 67888888888888888888888


Q ss_pred             HHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCccc
Q 007515          233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA  312 (600)
Q Consensus       233 Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~  312 (600)
                      |++.+ .+++.+|..|+||||+|+..|+.+++++|++.   +.++|.+|..|+||||+|+..|+.++|++|+++|+|+|.
T Consensus       138 Ll~~g-~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          138 LLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHTT-CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            88876 46677788888888888888888899988887   567888999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHhhhcCCcch-hhHHHHHHHhccc
Q 007515          313 INRKGYTALDVVESDASNSGA-LQIVPALEEAGAR  346 (600)
Q Consensus       313 ~n~~G~T~l~~a~~~a~~~~~-~~i~~~L~~~ga~  346 (600)
                      +|.+|+|||++|..    .+. .++++.|...++.
T Consensus       214 ~d~~G~TpL~~A~~----~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          214 LNKRQRTAVDCAEQ----NSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             CCTTSCCSGGGSCT----TCHHHHHTTC-------
T ss_pred             cCCCCCCHHHHHHh----CCcHHHHHHHHHHhchh
Confidence            99999999998632    232 4455555555554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.3e-34  Score=286.64  Aligned_cols=223  Identities=16%  Similarity=0.072  Sum_probs=104.5

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHH
Q 007515           72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLH  151 (600)
Q Consensus        72 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh  151 (600)
                      ++.+|..|.||||+|+..|+.+++++|++.++++...   +|.||||+|+..|+.+++++|++++.+++..+..|.||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            4455555555555555555555555555555544322   2455555555555555555555554444433333333444


Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCCCCC-ChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 007515          152 VSAMAGHLDIVKELLEARQEFAWKKDLNG-HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII  230 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v  230 (600)
                      +|+..|+.+++++|++.+.++. ..|..| .||||+|+..|+.+++++|++++++...  ...                 
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~-----------------  160 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAI-----------------  160 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CST-----------------
T ss_pred             HHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccC-----------------
Confidence            4444444444444444433333 333344 3444444444444444444444443311  113                 


Q ss_pred             HHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChH-hHHHHhCCcHHHHHHHHhcCCC
Q 007515          231 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTI-LHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       231 ~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                                       |.||||+|+..|+.+++++|++.   +.++|.+|..|+|| ||+|+..++.+++++|+++|++
T Consensus       161 -----------------g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          161 -----------------LLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             -----------------HHHHHHHHHHTTCHHHHHHHHHH---HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             -----------------CccHHHHHHHcChHHHHHHHHHc---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence                             44444444444444444444443   33344555555554 5555555555555555555555


Q ss_pred             cccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          310 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       310 ~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      ++..|..           +...++.+++++|+++|++..
T Consensus       221 ~~~~~~~-----------a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          221 IYSANLE-----------NVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             STTTTGG-----------GGTTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCChh-----------hhhcCCHHHHHHHHHcCCCCC
Confidence            5555421           222344555555555555443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=273.91  Aligned_cols=230  Identities=25%  Similarity=0.303  Sum_probs=166.0

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHh
Q 007515          110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS  189 (600)
Q Consensus       110 ~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  189 (600)
                      |..|.|||+.|+..|+.+++++|++.+.+++..+..+.||||.|+..|+.+++++|++.+++.....+..|.||||+|+.
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence            34444444444444444444444444444444444444555555555555555555555555554455567788888888


Q ss_pred             cCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCc-hhHHHHHH
Q 007515          190 KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ-YEAVKYLM  268 (600)
Q Consensus       190 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~-~~iv~~Ll  268 (600)
                      .|+.+++++|++.|+++.. .+..|.||||.|+..|+.++++.|++.+ ...+..+..|.||||+|+..++ .+++++|+
T Consensus        86 ~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            8888888888888777654 6777888888888888888888888766 3566677788888888886655 78888888


Q ss_pred             HhcccccccCCCCC-CCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          269 ETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       269 ~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      +.   +..++..+. .|+||||+|+..++.+++++|+++|++++.+|..|.||+++|.    ..++.+++++|++.|++.
T Consensus       164 ~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          164 TF---NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK----QRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HT---TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHHC---
T ss_pred             hc---CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHhhhcc
Confidence            76   556788887 9999999999999999999999999999999999999999964    457889999999999876


Q ss_pred             c
Q 007515          348 C  348 (600)
Q Consensus       348 ~  348 (600)
                      .
T Consensus       237 ~  237 (240)
T 3eu9_A          237 G  237 (240)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.7e-34  Score=284.92  Aligned_cols=199  Identities=18%  Similarity=0.142  Sum_probs=161.5

Q ss_pred             cccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 007515          139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL  218 (600)
Q Consensus       139 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  218 (600)
                      ++..+..|.||||+|+..|+.++++.|++.+.++. ..  +|+||||+|+..|+.+++++|+++|+++.. .|..|.|||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L   99 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTAL   99 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHH
Confidence            34445555666666666666666666666666654 22  488899999999999999999998888765 788899999


Q ss_pred             HHHHHcCCHHHHHHHHhccccccccccccc-cchhhHhHhcCchhHHHHHHHhcccccccCCCCC-CCChHhHHHHhCCc
Q 007515          219 HWAAIKGRINIIDEILSLNLQSAEMRTIHG-ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKL  296 (600)
Q Consensus       219 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~  296 (600)
                      |+|+..|+.+++++|++.+ ..++..+..| .||||+|+..|+.+++++|++....   .  .|. .|+||||+|+..|+
T Consensus       100 ~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---~--~~~~~g~t~L~~A~~~g~  173 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T--FDLAILLSCIHITIKNGH  173 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---T--CCCSTHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---c--ccccCCccHHHHHHHcCh
Confidence            9999999999999999886 4677778788 7999999999999999999887432   2  333 89999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCH-HHHHhhhcCCcchhhHHHHHHHhcccccCCC
Q 007515          297 TTMVIYLLKLGVDVNAINRKGYTA-LDVVESDASNSGALQIVPALEEAGARRCDQL  351 (600)
Q Consensus       297 ~~iv~~Ll~~gad~n~~n~~G~T~-l~~a~~~a~~~~~~~i~~~L~~~ga~~~~~~  351 (600)
                      .+++++|+++|+++|.+|..|.|| |++|..    .++.+++++|+++|++.....
T Consensus       174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTTTT
T ss_pred             HHHHHHHHHcCCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCCCC
Confidence            999999999999999999999998 999654    467899999999999877543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-34  Score=290.55  Aligned_cols=275  Identities=17%  Similarity=0.165  Sum_probs=224.1

Q ss_pred             HHHHcCCHHHHHHHHhhchhhh-------hccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHH
Q 007515           16 ETILRGDTQAFLSLIQQDEAKI-------KQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR   88 (600)
Q Consensus        16 ~A~~~gd~~~~~~ll~~~~~~l-------~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~   88 (600)
                      .++..+..+.++.++.......       ....+..|.|+||.||..|+.++|++|++.+.+ ++..|..|.||||+||.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence            3677788888888887654321       112234578999999999999999999999987 88899999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhc
Q 007515           89 EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA  168 (600)
Q Consensus        89 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~  168 (600)
                      .|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++++.+++..+..|.||||.|+..++.++++.++..
T Consensus        83 ~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B           83 DDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            999999999999998874 4588999999999999999999999999999988888899999999999999999998875


Q ss_pred             CccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc
Q 007515          169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG  248 (600)
Q Consensus       169 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  248 (600)
                      ........+..+.++++        ..+..++..+.......+..|.||||+|+..|+.++++.|++.+ .+++..|..|
T Consensus       162 ~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g  232 (299)
T 1s70_B          162 QGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDG  232 (299)
T ss_dssp             HTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTC
T ss_pred             cCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCC
Confidence            43322122222222322        34455666666655657788999999999999999999999877 5678888999


Q ss_pred             cchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       249 ~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      .||||+|+..|+.+++++|++.   +.+++.+|..|+||||+|++. ..+.++.|++
T Consensus       233 ~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~  285 (299)
T 1s70_B          233 WTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTAFDVADED-ILGYLEELQK  285 (299)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHH
T ss_pred             CcHHHHHHhcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999999999987   667899999999999999653 4455555553

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-33  Score=271.66  Aligned_cols=215  Identities=22%  Similarity=0.270  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcC
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR  169 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~  169 (600)
                      |+.+++++|++.++++....+..|.||||+|+..|+.+++++|++++.+++..+..+.||||.|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            45555566666666555555556666666666666666666666655555444444455555555555555555555555


Q ss_pred             ccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccc
Q 007515          170 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE  249 (600)
Q Consensus       170 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  249 (600)
                      +......|..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++.+ ...+..|..|.
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  159 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREE  159 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCC
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCc
Confidence            433335555666666666666666666666666666543 4556666666666666666666666654 34444455555


Q ss_pred             chhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       250 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                      ||||+|+..++.+++++|++.   +.+++.+|..|.||||+|+..++.+++++|+++|+.
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            555555555555555555554   334555555566666666666655555555555554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-35  Score=299.96  Aligned_cols=260  Identities=17%  Similarity=0.104  Sum_probs=205.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccc---------------
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYK---------------  108 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~---------------  108 (600)
                      .+.+|+|    ..+.++|++|++.+.+ ++..+..|.|+++     |+.++|+.|++++.+....               
T Consensus        22 ~~~~~~~----~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~   91 (327)
T 1sw6_A           22 RTAGPII----TFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS   91 (327)
T ss_dssp             ---CCEE----ECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------
T ss_pred             ccccchh----hhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccc
Confidence            3455666    4566889999999887 7888899999988     9999999999887553220               


Q ss_pred             -cCCCCCcHHHHHHHhCCHHHHHHHHhCCccccc-ccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHH
Q 007515          109 -LNRDNESVLYVACERGRLDVAKQLLNYSSLLIL-EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHL  186 (600)
Q Consensus       109 -~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~-~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  186 (600)
                       ......+.+|+|+..+..+++++|++.+.+++. .+..|.||||+|+..|+.+++++|++.+.++. .+|..|+||||+
T Consensus        92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~  170 (327)
T 1sw6_A           92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVK  170 (327)
T ss_dssp             ------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHH
T ss_pred             cccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHH
Confidence             111122345888888889999999999999998 78889999999999999999999999998887 889999999999


Q ss_pred             HHhcCc---HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhcc-------------------ccc
Q 007515          187 SCSKGH---LEITRELLKLDPDLSSLPDNEGRTPLHWAAI----KGRINIIDEILSLN-------------------LQS  240 (600)
Q Consensus       187 A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~----~g~~~~v~~Ll~~~-------------------~~~  240 (600)
                      |+..|+   .++++.|++.+.......|..|+||||+|+.    .|+.++++.|++.+                   ...
T Consensus       171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~  250 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK  250 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred             HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence            999998   6777888877633234578999999999999    89999999999874                   456


Q ss_pred             cccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCH
Q 007515          241 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTA  320 (600)
Q Consensus       241 ~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~  320 (600)
                      ++.++..|.||||.|+.      +++|++.     .+|.+|.+|+||||+|+..|+.+++++|+++|+|++.+|.+|+||
T Consensus       251 ~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          251 PNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             ---------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             cccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            77888999999999996      8888886     489999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 007515          321 LDVVE  325 (600)
Q Consensus       321 l~~a~  325 (600)
                      ||+|.
T Consensus       320 L~~A~  324 (327)
T 1sw6_A          320 VDFGA  324 (327)
T ss_dssp             GGGTC
T ss_pred             HHHHH
Confidence            99964

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.8e-33  Score=266.35  Aligned_cols=214  Identities=20%  Similarity=0.236  Sum_probs=163.8

Q ss_pred             CCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 007515           21 GDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVG  100 (600)
Q Consensus        21 gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~  100 (600)
                      |+.+.++.+++.+.. +....+..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGAS-LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCC-cccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            455666667766654 3344567788888888888888888888888776 67788888888888888888888888888


Q ss_pred             CCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCC
Q 007515          101 IDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNG  180 (600)
Q Consensus       101 ~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  180 (600)
                      .++......+..|.||||+|+..|+.+++++|++++.+++..+..+.||||.|+..|+.+++++|++.+.++. ..|..|
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g  158 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNRE  158 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCC
Confidence            8775556667888888888888888888888888888777777777778888888888888888887777665 667777


Q ss_pred             ChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 007515          181 HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL  238 (600)
Q Consensus       181 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  238 (600)
                      .||||+|+..|+.+++++|+++|+++.. .|..|.||||+|+..|+.+++++|++.+.
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            7888888888888888888887777644 67777788888888888888877777663

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=1.3e-31  Score=259.08  Aligned_cols=206  Identities=20%  Similarity=0.215  Sum_probs=155.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccc----cccCCCCCcHHHH
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI----YKLNRDNESVLYV  119 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~~  119 (600)
                      .|+||||+||..|+.+++++|++..+..++.+|..|.||||+|+..|+.+++++|++.++++.    ...+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999998444489999999999999999999999999999998764    3456789999999


Q ss_pred             HHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHH
Q 007515          120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL  199 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  199 (600)
                      |+..|+.+++++|++++.+++..+...  .++.                   .....|..|.||||+|+..|+.+++++|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~--~~~~-------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~L  140 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGS--VFHY-------------------RPHNLIYYGEHPLSFAACVGSEEIVRLL  140 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSG--GGSC-------------------CTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCc--ceee-------------------cccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999998876544321  1100                   1123455677777777777777777777


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhcccccc-----ccccccccchhhHhHhcCchhHHHHHHHh
Q 007515          200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINII----DEILSLNLQSA-----EMRTIHGETVLHLTVKNNQYEAVKYLMET  270 (600)
Q Consensus       200 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v----~~Ll~~~~~~~-----~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~  270 (600)
                      +++|+++.. .|..|.||||+|+..|+.+++    +.|++.+....     +.+|..|+||||+|+++|+.+++++|+++
T Consensus       141 l~~ga~~~~-~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          141 IEHGADIRA-QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHTTCCTTC-CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHCCCCCCC-CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            777776644 566777777777777777666    66666654332     45666777777777777777777777766


Q ss_pred             c
Q 007515          271 L  271 (600)
Q Consensus       271 ~  271 (600)
                      .
T Consensus       220 g  220 (232)
T 2rfa_A          220 R  220 (232)
T ss_dssp             H
T ss_pred             C
Confidence            3

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.9e-32  Score=264.59  Aligned_cols=222  Identities=21%  Similarity=0.275  Sum_probs=154.9

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCch---hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPE---MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESV  116 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~---~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  116 (600)
                      ..+..|+||||+|+..|+.+++++|++.+..   .++.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence            3566788888888888888888888887653   367788888888888888888888888888887764 347788888


Q ss_pred             HHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHH
Q 007515          117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEIT  196 (600)
Q Consensus       117 L~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  196 (600)
                      ||+|+..|+.+++++|++.+.+...                            .......|..|.||||+|+..|+.+++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v  133 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASIHGYLGIV  133 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhH----------------------------HHHhhccCCCCCCHHHHHHHcCCHHHH
Confidence            8888888888888888887654211                            111235566677777777777777777


Q ss_pred             HHHHhcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhccccc
Q 007515          197 RELLKLDPDLSSLPDN-EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK  275 (600)
Q Consensus       197 ~~Ll~~~~~~~~~~d~-~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~  275 (600)
                      ++|++.|+++.. .+. .|.||||+|+..|+.+++++|++.+ ..++.+|..|.||||+|+.+++.+++++|++.+.. .
T Consensus       134 ~~Ll~~g~~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~  210 (236)
T 1ikn_D          134 ELLVSLGADVNA-QEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE-N  210 (236)
T ss_dssp             HHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG-G
T ss_pred             HHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh-h
Confidence            777777777655 444 7777777777777777777777765 45666777777777777777777777777776432 2


Q ss_pred             ccCCCCCCCChHhHHHHh
Q 007515          276 LANMPDNDGNTILHLATA  293 (600)
Q Consensus       276 ~~n~~d~~G~T~Lh~A~~  293 (600)
                      ....++.+|.||.+.+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          211 LQMLPESEDEESYDTESE  228 (236)
T ss_dssp             GSSCCCCCTTTCCCCC--
T ss_pred             hhcCCccchHHHHhhhcc
Confidence            344667777777665543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.2e-32  Score=265.41  Aligned_cols=211  Identities=22%  Similarity=0.236  Sum_probs=119.6

Q ss_pred             cCCCCCcHhHHHHHcCCHHHHHHHHhCCcc---cccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHH
Q 007515           75 ENEKMETPLHEACREGRLNFVKLFVGIDPS---VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLH  151 (600)
Q Consensus        75 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh  151 (600)
                      .|..|.||||+|+..|+.++++.|++.+..   .....+..|.||||+|+..|+.+++++|++++.+++           
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------   72 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-----------   72 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-----------
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------
Confidence            455666666666666666666666655432   123334455555555555555555555554443332           


Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCC-----CCCCCCCCCCHHHHHHHcCC
Q 007515          152 VSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL-----SSLPDNEGRTPLHWAAIKGR  226 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~tpL~~Aa~~g~  226 (600)
                                             ..|..|+||||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+
T Consensus        73 -----------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  129 (236)
T 1ikn_D           73 -----------------------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY  129 (236)
T ss_dssp             -----------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC
T ss_pred             -----------------------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC
Confidence                                   33445555555555555566666666555432     12345566677777777777


Q ss_pred             HHHHHHHHhccccccccccc-cccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          227 INIIDEILSLNLQSAEMRTI-HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       227 ~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      .+++++|++.+ ..++..+. .|.||||+|+..|+.+++++|++.   +.+++.+|..|.||||+|+..++.+++++|++
T Consensus       130 ~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  205 (236)
T 1ikn_D          130 LGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  205 (236)
T ss_dssp             HHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHHH
Confidence            77776666665 34444444 666666666666666666666665   44566666666666666666666666666666


Q ss_pred             cCCCcc--cccCCCCCHHHH
Q 007515          306 LGVDVN--AINRKGYTALDV  323 (600)
Q Consensus       306 ~gad~n--~~n~~G~T~l~~  323 (600)
                      +|++..  ..+.+|.||.+.
T Consensus       206 ~ga~~~~~~~~~~~~~~~~~  225 (236)
T 1ikn_D          206 LTLENLQMLPESEDEESYDT  225 (236)
T ss_dssp             TSCGGGSSCCCCCTTTCCCC
T ss_pred             cchhhhhcCCccchHHHHhh
Confidence            666555  556666666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=9e-31  Score=253.22  Aligned_cols=202  Identities=22%  Similarity=0.263  Sum_probs=116.5

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhC-CcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhc
Q 007515           78 KMETPLHEACREGRLNFVKLFVGI-DPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA  156 (600)
Q Consensus        78 ~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~  156 (600)
                      .|+||||+|++.|+.++++.|++. +.++ ...|..|.||||+|+..|+.+++++|++++.+....              
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------------   66 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE--------------   66 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC--------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc--------------
Confidence            366777777777777777777665 4333 334666666666666666666666666655543210              


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCC------------CCCCCCHHHHHHHc
Q 007515          157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP------------DNEGRTPLHWAAIK  224 (600)
Q Consensus       157 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~------------d~~g~tpL~~Aa~~  224 (600)
                                     .....|..|+||||+|+..|+.+++++|+++|+++....            |..|.||||+|+..
T Consensus        67 ---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  131 (232)
T 2rfa_A           67 ---------------PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV  131 (232)
T ss_dssp             ---------------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH
T ss_pred             ---------------cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc
Confidence                           012456678888888888888888888888877765421            22455666666666


Q ss_pred             CCHHHHHHHHhccccccccccccccchhhHhHhcCchhHH----HHHHHhcccc---cccCCCCCCCChHhHHHHhCCcH
Q 007515          225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV----KYLMETLNIT---KLANMPDNDGNTILHLATAGKLT  297 (600)
Q Consensus       225 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv----~~Ll~~~~~~---~~~n~~d~~G~T~Lh~A~~~~~~  297 (600)
                      |+.+++++|++.+ .+++.+|..|+||||+|+..++.+++    ++|++.....   ...+.+|..|+||||+|+..|+.
T Consensus       132 ~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~  210 (232)
T 2rfa_A          132 GSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI  210 (232)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence            6666666655554 34445555555555555555555554    4444442211   01134555555555555555555


Q ss_pred             HHHHHHHhcCCCc
Q 007515          298 TMVIYLLKLGVDV  310 (600)
Q Consensus       298 ~iv~~Ll~~gad~  310 (600)
                      +++++|+++|++.
T Consensus       211 ~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          211 VMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCccc
Confidence            5555555555443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-32  Score=280.39  Aligned_cols=255  Identities=10%  Similarity=0.029  Sum_probs=198.8

Q ss_pred             cCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhc-----------------cCCCCCcH
Q 007515           20 RGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAA-----------------ENEKMETP   82 (600)
Q Consensus        20 ~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~-----------------~n~~g~Tp   82 (600)
                      ....+.++.+++++...  ...+..|.|++|     |+.++|+.|++.+.+ .+.                 +.....+.
T Consensus        29 ~~~~dlv~~ll~~ga~i--~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKI--MKALPSPVVNDN-----EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQ  100 (327)
T ss_dssp             ECCTTCCCSTTTSSCCC--EECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred             hhcCchHHHHhhCCccc--ccCCCCCCcccC-----chhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccch
Confidence            34445566677666443  334677899988     999999999998744 111                 11112234


Q ss_pred             hHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC---H
Q 007515           83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH---L  159 (600)
Q Consensus        83 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~---~  159 (600)
                      +|.|+..+..+++++|++.+.++....+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..|+   .
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            5888888889999999999998876569999999999999999999999999999999888999999999999998   6


Q ss_pred             HHHHHHHhcCccccccCCCCCChHHHHHHh----cCcHHHHHHHHhc--------------------CCCCCCCCCCCCC
Q 007515          160 DIVKELLEARQEFAWKKDLNGHTPLHLSCS----KGHLEITRELLKL--------------------DPDLSSLPDNEGR  215 (600)
Q Consensus       160 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~  215 (600)
                      ++++.|++......+..|..|+||||+|+.    .|+.+++++|++.                    ++++.. .+..|.
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~g~  259 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNGERK  259 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccccCC
Confidence            888888888744445889999999999999    8999999999987                    677655 789999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC
Q 007515          216 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  295 (600)
Q Consensus       216 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  295 (600)
                      ||||.|+.      +++|++.   .++.+|..|+||||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|++.|
T Consensus       260 t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          260 DSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTCC--
T ss_pred             ChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcC
Confidence            99999985      8888887   4778899999999999999999999999988   7789999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2e-30  Score=244.91  Aligned_cols=192  Identities=22%  Similarity=0.288  Sum_probs=151.4

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      +.||||.|+..|+.+.++.|++.++...+..|.+|+||||+|+..|+.+++++|++.|+++.. .+..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcC
Confidence            445777777777777777777777644446777888888888888888888888888887755 6778888888888888


Q ss_pred             CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCc-----HHHH
Q 007515          226 RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL-----TTMV  300 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-----~~iv  300 (600)
                      +.+++++|++.++...+..+..|.||||+|+..++.+++++|++..  ..+++.+|..|+||||+|+..++     .+++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG--REDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC--CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            8888888887776777778888888888888888888888888773  14677888888888888888776     7888


Q ss_pred             HHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhc
Q 007515          301 IYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG  344 (600)
Q Consensus       301 ~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~g  344 (600)
                      ++|+++|++++.+|..|.|||++|..    .++.+++++|+++|
T Consensus       162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLMENGADQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             HHHHHCCCCCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence            88888888888888888888888544    46677888887765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=5.3e-30  Score=241.94  Aligned_cols=193  Identities=24%  Similarity=0.196  Sum_probs=155.3

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  122 (600)
                      ..+.|+||.||..|+.+.++.|++.++..++..|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence            3567889999999999999999888875588888888999999999999999999998888764 347788888888888


Q ss_pred             hCCHHHHHHHH-hCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCc-----HHHH
Q 007515          123 RGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-----LEIT  196 (600)
Q Consensus       123 ~g~~e~v~~Ll-~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv  196 (600)
                      .|+.+++++|+ ..+.+++..+..+.||||.|+..|+.+++++|++.++...+..|..|+||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            88888888888 45556666666777788888888888888888888744444777788888888887776     7888


Q ss_pred             HHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 007515          197 RELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN  237 (600)
Q Consensus       197 ~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~  237 (600)
                      ++|+++|+++.. +|..|.||||+|+..|+.+++++|++.+
T Consensus       162 ~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLMENGADQSI-KDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHCCCCCCc-cCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            888888887754 6778888888888888888888887653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.3e-30  Score=257.03  Aligned_cols=223  Identities=17%  Similarity=0.209  Sum_probs=159.6

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHh----CCcccc---cccCCCCCcHHHHHHHh---CCHHHHHHHHhCCccccc
Q 007515           72 VAAENEKMETPLHEACREGRLNFVKLFVG----IDPSVI---YKLNRDNESVLYVACER---GRLDVAKQLLNYSSLLIL  141 (600)
Q Consensus        72 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~---~~~~~~g~tpL~~A~~~---g~~e~v~~Ll~~~~~~~~  141 (600)
                      .+..|..|.||||.||+.|+.++|+.|++    .+.++.   ...+..|.||||+|+..   |+.+++++|++++++...
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            45678889999999999999998888886    343332   13477899999999976   889999999887764321


Q ss_pred             ccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCC---------
Q 007515          142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDN---------  212 (600)
Q Consensus       142 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~---------  212 (600)
                                          ++.+++...   ...|..|+||||+|+..|+.+++++|+++|+++.. .+.         
T Consensus        86 --------------------~~~~i~~~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~  141 (273)
T 2pnn_A           86 --------------------LKQFVNASY---TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKG  141 (273)
T ss_dssp             --------------------HHHHHTCCC---CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSS
T ss_pred             --------------------hhHHhhccc---ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccccccccc
Confidence                                112222211   13567899999999999999999999999888765 444         


Q ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHhc--cccccccccccccchhhHhHhcCc---------hhHHHHHHHhcccccc
Q 007515          213 -----EGRTPLHWAAIKGRINIIDEILSL--NLQSAEMRTIHGETVLHLTVKNNQ---------YEAVKYLMETLNITKL  276 (600)
Q Consensus       213 -----~g~tpL~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~Lh~Av~~~~---------~~iv~~Ll~~~~~~~~  276 (600)
                           .|.||||+|+..|+.+++++|++.  .+.+++.+|..|+||||+|+..++         .+++++|++.   +.+
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~  218 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL---GAK  218 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh---hhh
Confidence                 688888888888888888888883  335677888888888888888877         6888888877   444


Q ss_pred             cC-------CCCCCCChHhHHHHhCCcHHHHHHHHhcCC-CcccccCCCCCHH
Q 007515          277 AN-------MPDNDGNTILHLATAGKLTTMVIYLLKLGV-DVNAINRKGYTAL  321 (600)
Q Consensus       277 ~n-------~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga-d~n~~n~~G~T~l  321 (600)
                      +|       .+|.+|+||||+|+..|+.+++++|+++|+ |+......+.+|-
T Consensus       219 ~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            44       588899999999999999999999999888 7877777766654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.5e-30  Score=258.28  Aligned_cols=210  Identities=18%  Similarity=0.206  Sum_probs=144.9

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCch---hhh----ccCCCCCcHhHHHHHc---CCHHHHHHHHhCCcccc---
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPE---MVA----AENEKMETPLHEACRE---GRLNFVKLFVGIDPSVI---  106 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~---~l~----~~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~---  106 (600)
                      ..+..|.|+||.||+.|+.++|+.|++.+.+   .++    ..|..|.||||+|+..   |+.+++++|++.+++..   
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            4567899999999999999999999985321   122    4588999999999987   99999999999876531   


Q ss_pred             ---c----ccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCC
Q 007515          107 ---Y----KLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN  179 (600)
Q Consensus       107 ---~----~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  179 (600)
                         .    ..|..|.||||+|+..|+.+++++|++++.+++..+..+.  +                  ........+..
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--~------------------~~~~~~~~~~~  147 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF--F------------------KKTKGRPGFYF  147 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG--G------------------SSCSSSCCCCS
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc--c------------------ccccccccccC
Confidence               1    1456899999999999999999999999888776554220  0                  00011133445


Q ss_pred             CChHHHHHHhcCcHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcccccc------
Q 007515          180 GHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGR---------INIIDEILSLNLQSA------  241 (600)
Q Consensus       180 g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~tpL~~Aa~~g~---------~~~v~~Ll~~~~~~~------  241 (600)
                      |.||||+|+..|+.+++++|++   .|+++.. +|.+|+||||+|+..|+         .++++.|++.+.+..      
T Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~  226 (273)
T 2pnn_A          148 GELPLSLAACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE  226 (273)
T ss_dssp             CBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence            6666666666666666666666   6666544 56666677776666666         566666666653221      


Q ss_pred             ccccccccchhhHhHhcCchhHHHHHHHh
Q 007515          242 EMRTIHGETVLHLTVKNNQYEAVKYLMET  270 (600)
Q Consensus       242 ~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~  270 (600)
                      +.+|..|+||||+|++.|+.+++++|++.
T Consensus       227 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  255 (273)
T 2pnn_A          227 EITNRKGLTPLALAASSGKIGVLAYILQR  255 (273)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence            24566666777777777777777776666

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.3e-30  Score=254.37  Aligned_cols=204  Identities=20%  Similarity=0.184  Sum_probs=146.9

Q ss_pred             CCcHHHHHHHhCCHH----HHHHHHHhCchhhhc----cCCCCCcHhHHHHHc---CCHHHHHHHHhCCcccccc-----
Q 007515           45 LNTILHLTARFGHEE----LASEILKLCPEMVAA----ENEKMETPLHEACRE---GRLNFVKLFVGIDPSVIYK-----  108 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e----~v~~Ll~~~~~~l~~----~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~-----  108 (600)
                      |+||||.||..|+.+    ++++|++.+.+ ++.    +|..|.||||+|+..   |+.+++++|++.+++....     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            789999999999997    55666667776 565    899999999999999   9999999999988765321     


Q ss_pred             -----cCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChH
Q 007515          109 -----LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTP  183 (600)
Q Consensus       109 -----~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  183 (600)
                           .|..|.||||+|+..|+.+++++|++++.+++..+..+..+                    .+ ....|..|.||
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~--------------------~~-~~~~~~~g~tp  139 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ--------------------KH-QGTCFYFGELP  139 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS--------------------CC-SSSCCCSCSSH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc--------------------cc-ccccccCCCCH
Confidence                 24679999999999999999999999988877655442100                    00 11233446777


Q ss_pred             HHHHHhcCcHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhcccccc------cccc
Q 007515          184 LHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAI--KGRIN-------IIDEILSLNLQSA------EMRT  245 (600)
Q Consensus       184 Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~tpL~~Aa~--~g~~~-------~v~~Ll~~~~~~~------~~~~  245 (600)
                      ||+|+..|+.+++++|++   .|+++.. +|.+|+||||+|+.  .++.+       +++.|++.+.+..      +.+|
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d  218 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN  218 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC
Confidence            777777777777777777   6666644 56667777777776  66666       7777776653221      5666


Q ss_pred             ccccchhhHhHhcCchhHHHHHHHhc
Q 007515          246 IHGETVLHLTVKNNQYEAVKYLMETL  271 (600)
Q Consensus       246 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~  271 (600)
                      ..|+||||+|++.|+.+++++|+++.
T Consensus       219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          219 HQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            67777777777777777777777663

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=5e-30  Score=252.04  Aligned_cols=205  Identities=20%  Similarity=0.180  Sum_probs=127.0

Q ss_pred             CCCcHhHHHHHcCCHH----HHHHHHhCCccccc---ccCCCCCcHHHHHHHh---CCHHHHHHHHhCCcccccccCCCC
Q 007515           78 KMETPLHEACREGRLN----FVKLFVGIDPSVIY---KLNRDNESVLYVACER---GRLDVAKQLLNYSSLLILEVDGLT  147 (600)
Q Consensus        78 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~e~v~~Ll~~~~~~~~~~~~~~  147 (600)
                      .|+||||.|+..|+.+    ++++|++.+.++..   ..+..|.||||+|+..   |+.+++++|++.+.+.+....   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence            3677888888888876    45556666666644   2577777777777777   777777777776655432110   


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC-------------C
Q 007515          148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE-------------G  214 (600)
Q Consensus       148 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g  214 (600)
                                       ++..  . ....|..|.||||+|+..|+.+++++|+++|+++.. .+..             |
T Consensus        78 -----------------~~~~--~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           78 -----------------LVNA--Q-CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             -----------------GGGC--C-CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCSSSCCCSC
T ss_pred             -----------------hccc--c-cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-ccccccccccccccccCC
Confidence                             0000  0 113456788899998888888888888888888765 4444             6


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhc--cccccccccccccchhhHhHh--cCchh-------HHHHHHHhccccccc------
Q 007515          215 RTPLHWAAIKGRINIIDEILSL--NLQSAEMRTIHGETVLHLTVK--NNQYE-------AVKYLMETLNITKLA------  277 (600)
Q Consensus       215 ~tpL~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~Lh~Av~--~~~~~-------iv~~Ll~~~~~~~~~------  277 (600)
                      .||||+|+..|+.+++++|++.  .+.+++.+|..|+||||+|+.  .++.+       ++++|++.   +.++      
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~~  213 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQL  213 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCCG
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCccccccc
Confidence            6666666666666666666662  224455555556666666655  45554       55555554   3333      


Q ss_pred             -CCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          278 -NMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       278 -n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                       +.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence             55555555555555555555555555555544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4.3e-29  Score=228.59  Aligned_cols=158  Identities=32%  Similarity=0.457  Sum_probs=121.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 007515          149 SLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       149 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~  228 (600)
                      +|+.|+..|+.++|+.|++.+.+++ .+|.+|+||||+|+..++.++++.|++.|+++.. +|.+|+||||+|+..|+.+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHcCCHH
Confidence            6777888888888888888777765 6777888888888888888888888888887755 6778888888888888888


Q ss_pred             HHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCC
Q 007515          229 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  308 (600)
Q Consensus       229 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  308 (600)
                      +++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++.   +.+++.+|.+|+||||+|+..|+.+++++|+++||
T Consensus        85 ~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           85 VVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            888888776 45677777788888888888888888888776   55677788888888888888888888888888888


Q ss_pred             Cccc
Q 007515          309 DVNA  312 (600)
Q Consensus       309 d~n~  312 (600)
                      +++.
T Consensus       161 ~ie~  164 (169)
T 4gpm_A          161 WLEH  164 (169)
T ss_dssp             ----
T ss_pred             CcCC
Confidence            7754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=3.4e-28  Score=222.63  Aligned_cols=157  Identities=27%  Similarity=0.357  Sum_probs=111.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCH
Q 007515           47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRL  126 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  126 (600)
                      +.|+.||+.|+.++|+.|++.+.+ ++.+|..|.||||+|+..++.+++++|++.++++. ..|..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCH
Confidence            457788888888888888887776 67778888888888888888888888888777763 3477777888777777777


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCC
Q 007515          127 DVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL  206 (600)
Q Consensus       127 e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  206 (600)
                      +++++|++++++++..+..|.||||+|+..|+.++++.|++.+.++. .+|.+|+||||+|+..|+.+++++|+++|+++
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            77777777777766666666666666666666666666666666654 55666666666666666666666666666665

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.3e-29  Score=246.65  Aligned_cols=207  Identities=17%  Similarity=0.142  Sum_probs=127.5

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHH----hCchhhhccC----CCCCcHhHHHH---HcCCHHHHHHHHhCCccc------
Q 007515           43 GSLNTILHLTARFGHEELASEILK----LCPEMVAAEN----EKMETPLHEAC---REGRLNFVKLFVGIDPSV------  105 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~----~~~~~l~~~n----~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~------  105 (600)
                      ..+.|+||.||+.|+.+.++.|++    .+.. ++..+    ..|.||||+|+   +.|+.+++++|++.+++.      
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            456788888888888885555554    5555 34333    66888888888   668888888888776542      


Q ss_pred             ----ccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCC
Q 007515          106 ----IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGH  181 (600)
Q Consensus       106 ----~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  181 (600)
                          ....|..|.||||+|+..|+.+++++|++++.+++..+.+..                    ..+......+..|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------~~~~~~~~~~~~g~  141 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF--------------------FQPKDEGGYFYFGE  141 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC--------------------CSSSCCCCSCCSCS
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc--------------------cCcccccccccCCC
Confidence                122344778888888888888888888887777665442110                    00000012224566


Q ss_pred             hHHHHHHhcCcHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcccccc------cc
Q 007515          182 TPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGR---------INIIDEILSLNLQSA------EM  243 (600)
Q Consensus       182 tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~tpL~~Aa~~g~---------~~~v~~Ll~~~~~~~------~~  243 (600)
                      ||||+|+..|+.+++++|++   .|+++.. +|..|+||||+|+..|+         .++++.|++.+.+..      +.
T Consensus       142 tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  220 (260)
T 3jxi_A          142 LPLSLAACTNQPHIVHYLTENGHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL  220 (260)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhc
Confidence            66666666666666666666   5555543 55666666666666555         466666666553211      44


Q ss_pred             ccccccchhhHhHhcCchhHHHHHHHhc
Q 007515          244 RTIHGETVLHLTVKNNQYEAVKYLMETL  271 (600)
Q Consensus       244 ~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  271 (600)
                      .|..|+||||+|++.|+.+++++|++++
T Consensus       221 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          221 LNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            5566666666666666666666666653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=8.8e-29  Score=243.62  Aligned_cols=207  Identities=17%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHh----CCcccccc---cCCCCCcHHHHHH---HhCCHHHHHHHHhCCcccccccCC
Q 007515           76 NEKMETPLHEACREGRLNFVKLFVG----IDPSVIYK---LNRDNESVLYVAC---ERGRLDVAKQLLNYSSLLILEVDG  145 (600)
Q Consensus        76 n~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~---~~~~g~tpL~~A~---~~g~~e~v~~Ll~~~~~~~~~~~~  145 (600)
                      |..|+|+||.|++.|+.+.++.|++    .+.++...   .+..|.||||+|+   ..|+.+++++|++.+++....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            4567778888888888775444443    55555322   2356777777777   567777777777765543210   


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCC--------------
Q 007515          146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPD--------------  211 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------  211 (600)
                                       ..++.  ... ...|..|+||||+||..|+.+++++|++.|+++.. .+              
T Consensus        79 -----------------~~~~~--~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           79 -----------------REFIN--SPF-RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYF  137 (260)
T ss_dssp             -----------------HHHHT--CCB-CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSC
T ss_pred             -----------------Hhhhc--ccc-cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccc
Confidence                             00111  111 24456789999999999999999999999988765 44              


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhc--cccccccccccccchhhHhHhcCc---------hhHHHHHHHhccccccc---
Q 007515          212 NEGRTPLHWAAIKGRINIIDEILSL--NLQSAEMRTIHGETVLHLTVKNNQ---------YEAVKYLMETLNITKLA---  277 (600)
Q Consensus       212 ~~g~tpL~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~Lh~Av~~~~---------~~iv~~Ll~~~~~~~~~---  277 (600)
                      ..|.||||+|+..|+.+++++|++.  ...+++.+|..|+||||+|+..++         .+++++|++.   +..+   
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~~~~  214 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK---CAKLFPD  214 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---HHHHCTT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh---Ccccccc
Confidence            3566666666666666666666662  224455555556666666665444         4555555554   2222   


Q ss_pred             ----CCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          278 ----NMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       278 ----n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                          +.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus       215 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                44555555555555555555555555555443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.8e-30  Score=267.98  Aligned_cols=263  Identities=16%  Similarity=0.132  Sum_probs=185.7

Q ss_pred             CcHHHHHHH-hCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcHHHHHHH
Q 007515           46 NTILHLTAR-FGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI--YKLNRDNESVLYVACE  122 (600)
Q Consensus        46 ~T~Lh~Aa~-~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~  122 (600)
                      .+++++|+. .++.++++++++.+.+        ++||||+||+.|+.++|++|++.++...  ...+..|.||||+|+.
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            467787776 5778888888877654        4599999999999999999999876221  1235567889999999


Q ss_pred             hCCHHHHHHHHhCCcc---cccccCCCChHHHHHHhcCCHHHHHHHHhcCccccc-cCCCCCChHHHHHH-hcCcHHHHH
Q 007515          123 RGRLDVAKQLLNYSSL---LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAW-KKDLNGHTPLHLSC-SKGHLEITR  197 (600)
Q Consensus       123 ~g~~e~v~~Ll~~~~~---~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~d~~g~tpLh~A~-~~g~~~iv~  197 (600)
                      +|+.+++++|++++++   .+....+ .||||.|+..|+.+++++|++.+++... ..|..|.||||+|+ ..|+.++++
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            9999999999999964   2222222 7899999999999999999999888652 26777899999999 999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhH--------------
Q 007515          198 ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA--------------  263 (600)
Q Consensus       198 ~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~i--------------  263 (600)
                      +|++.|+        .|.||||.|+..|+.+++++|++.+.. .+.    ..++++.|+.+|+.++              
T Consensus       217 ~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~----~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~  283 (376)
T 2aja_A          217 FLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKE----MHDAFKLSNPDGVFDLVTKSECLQGFYMLR  283 (376)
T ss_dssp             HHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHH----HHTTTTTTSSSSCCCCSSHHHHHHHHHHHH
T ss_pred             HHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccc----ccHHHHHHHHCCChhhhcHHhhhhhHHHHH
Confidence            9998663        278999999999999999999987642 222    2346777777766552              


Q ss_pred             -------------HHHHHHhcccccc--cCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhc
Q 007515          264 -------------VKYLMETLNITKL--ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA  328 (600)
Q Consensus       264 -------------v~~Ll~~~~~~~~--~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a  328 (600)
                                   +++|++.......  ....++.++||||+|+..|+.+++++|++.|   ..++..|+|++++++   
T Consensus       284 ~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~---  357 (376)
T 2aja_A          284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINE---  357 (376)
T ss_dssp             HHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-----------
T ss_pred             HHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhcccccc---
Confidence                         2333322111111  1234457889999999999999999999864   778899999999843   


Q ss_pred             CCcchhhHH
Q 007515          329 SNSGALQIV  337 (600)
Q Consensus       329 ~~~~~~~i~  337 (600)
                       ..+..++.
T Consensus       358 -~~~~~~~~  365 (376)
T 2aja_A          358 -TGGRLDLR  365 (376)
T ss_dssp             ---------
T ss_pred             -ccccccHH
Confidence             34444444

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=9.2e-28  Score=220.75  Aligned_cols=170  Identities=24%  Similarity=0.241  Sum_probs=144.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      +.+|||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.|+++.. .+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCC
Confidence            346899999999999999999888886668888999999999999999999999999988765 7888999999999999


Q ss_pred             CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          226 RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      +.+++++|++.+ ..++.+|..|+||||+|+..++.+++++|++.   +.+++.+|.+|+||||+|+..++.+++++|++
T Consensus        81 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           81 YTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             CHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            999999999876 46777888899999999999999999999987   56788899999999999999999999999999


Q ss_pred             cCCCcccccCCCCCH
Q 007515          306 LGVDVNAINRKGYTA  320 (600)
Q Consensus       306 ~gad~n~~n~~G~T~  320 (600)
                      +|+++...|..|.||
T Consensus       157 ~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHSCC-------
T ss_pred             HHHHHhcccCCCCCC
Confidence            999999999888887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=237.60  Aligned_cols=195  Identities=19%  Similarity=0.233  Sum_probs=107.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCch-hhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           46 NTILHLTARFGHEELASEILKLCPE-MVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        46 ~T~Lh~Aa~~g~~e~v~~Ll~~~~~-~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      .+++|.|+..|+.+.++.+++...+ .++.+|..|.||||+|+..|+.+++++|++.++......+..|.|||++|+...
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            3445555555555555555544332 244555555555555555555555555555555333444555555555555110


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCC
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP  204 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  204 (600)
                      .                            ...++.++++.|++.+.... ..|..|+||||+|+..|+.+++++|++.|+
T Consensus       157 ~----------------------------~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga  207 (276)
T 4hbd_A          157 L----------------------------KTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEA  207 (276)
T ss_dssp             C----------------------------CSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             h----------------------------hhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            0                            03344455555555553333 445556666666666666666666666666


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHh
Q 007515          205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET  270 (600)
Q Consensus       205 ~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~  270 (600)
                      +++. +|.+|+||||+|+..|+.++++.|++..+.+++.+|..|+||||+|+.+|+.+++++|+++
T Consensus       208 d~n~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          208 DVNV-QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCC-CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            6543 5566666666666666666666666633345555666666666666666666666666655

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=7.6e-27  Score=214.59  Aligned_cols=168  Identities=24%  Similarity=0.262  Sum_probs=100.6

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCC
Q 007515           46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGR  125 (600)
Q Consensus        46 ~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  125 (600)
                      .||||.||..|+.+++++|++.++..++.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCCC
Confidence            4667777777777777777776666666666677777777777777777777776665553 335566666666666666


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCC
Q 007515          126 LDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD  205 (600)
Q Consensus       126 ~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  205 (600)
                      .+++++|++++.+++                                  ..|..|+||||+|+..|+.+++++|++.|++
T Consensus        82 ~~~v~~Ll~~g~~~~----------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  127 (172)
T 3v30_A           82 TDIVGLLLERDVDIN----------------------------------IYDWNGGTPLLYAVRGNHVKCVEALLARGAD  127 (172)
T ss_dssp             HHHHHHHHTTTCCTT----------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCC----------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            666666666555443                                  3455566666666666666666666666665


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccc
Q 007515          206 LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET  250 (600)
Q Consensus       206 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  250 (600)
                      +.. .|..|.||||+|+..|+.++++.|++.+. .....+..|.|
T Consensus       128 ~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~~~-~~~~~~~~~~~  170 (172)
T 3v30_A          128 LTT-EADSGYTPMDLAVALGYRKVQQVIENHIL-KLFQSNLVPAD  170 (172)
T ss_dssp             TTC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHH-HHSCC------
T ss_pred             ccc-cCCCCCCHHHHHHHhCcHHHHHHHHHHHH-HHhcccCCCCC
Confidence            543 55566666666666666666666666553 23333344443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=5e-27  Score=233.33  Aligned_cols=188  Identities=19%  Similarity=0.233  Sum_probs=148.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhCCcc--cccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHH-----
Q 007515          116 VLYVACERGRLDVAKQLLNYSSL--LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC-----  188 (600)
Q Consensus       116 pL~~A~~~g~~e~v~~Ll~~~~~--~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-----  188 (600)
                      ++|.|+..|+.+.++.+++.+.+  ++..+..|.||||+|+..|+.++++.|++.++...+..|..|.||||+|+     
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~  158 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK  158 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh
Confidence            34444444555554444443332  33344455556666666666666666666665333477888999999999     


Q ss_pred             hcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHH
Q 007515          189 SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM  268 (600)
Q Consensus       189 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll  268 (600)
                      ..++.++++.|++.|.+... .+..|.||||+|+..|+.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|+
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  236 (276)
T 4hbd_A          159 TQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGLLL  236 (276)
T ss_dssp             SHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            66889999999999977654 7888999999999999999999999987 578889999999999999999999999999


Q ss_pred             HhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC
Q 007515          269 ETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  307 (600)
Q Consensus       269 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  307 (600)
                      +.  .+.+++.+|.+|+||||+|+..|+.+++++|++++
T Consensus       237 ~~--~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          237 AV--PSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TS--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             hc--CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            82  16678999999999999999999999999999653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=2e-26  Score=215.91  Aligned_cols=161  Identities=22%  Similarity=0.256  Sum_probs=99.5

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      ..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~  107 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMW  107 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence            3455566666666666666666666666554 55556666666666666666666666666655542 235555555555


Q ss_pred             HHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHH
Q 007515          120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL  199 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  199 (600)
                      |+..|+.+++++|++++.+++                                  ..|..|.||||+|+..|+.+++++|
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~----------------------------------~~~~~g~t~L~~A~~~~~~~~v~~L  153 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVN----------------------------------DRNLEGETPLIVASKYGRSEIVKKL  153 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSS----------------------------------CCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCC----------------------------------CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            555555555555555544433                                  4555666667776666666777777


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 007515          200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN  237 (600)
Q Consensus       200 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~  237 (600)
                      +++|+++.. .|..|.||||+|+..|+.+++++|++.+
T Consensus       154 l~~ga~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          154 LELGADISA-RDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHCCCCCCC-cCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            766666543 5666677777777777777777666543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=2.2e-26  Score=209.17  Aligned_cols=158  Identities=21%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER  123 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  123 (600)
                      ...|+||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|++.++++. ..+..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence            346777777777777777777777666 56777777777777777 77777777777776653 3466777777777777


Q ss_pred             CCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC
Q 007515          124 GRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD  203 (600)
Q Consensus       124 g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  203 (600)
                      |+.+++++|++++.+++..+..|.||||.|+..|+.+++++|++.+++.....|..|.||||+|+..|+.+++++|+++|
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            77777777777766665555555555555555555555555555555543355555555555555555555555555555


Q ss_pred             C
Q 007515          204 P  204 (600)
Q Consensus       204 ~  204 (600)
                      +
T Consensus       161 A  161 (162)
T 1ihb_A          161 A  161 (162)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=2.8e-26  Score=214.84  Aligned_cols=163  Identities=26%  Similarity=0.313  Sum_probs=126.5

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHH
Q 007515           72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLH  151 (600)
Q Consensus        72 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh  151 (600)
                      ++.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.++++                     
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~---------------------   85 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAE---------------------   85 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHH---------------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHH---------------------
Confidence            45566666666666666666666666666555442 23445555555555555555444                     


Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 007515          152 VSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID  231 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~  231 (600)
                                  +|++.+.++. ..|..|.||||+|+..|+.+++++|++.|+++.. .|..|.||||+|+..|+.++++
T Consensus        86 ------------~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~  151 (192)
T 2rfm_A           86 ------------KLLSKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVK  151 (192)
T ss_dssp             ------------HHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ------------HHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHH
Confidence                        4454444443 5677899999999999999999999999999865 7899999999999999999999


Q ss_pred             HHHhccccccccccccccchhhHhHhcCchhHHHHHHHhc
Q 007515          232 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL  271 (600)
Q Consensus       232 ~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  271 (600)
                      +|++.+ .+++.+|..|.||||+|+..++.+++++|++..
T Consensus       152 ~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          152 KLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999986 567888999999999999999999999999863

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=6.1e-29  Score=256.46  Aligned_cols=241  Identities=14%  Similarity=0.096  Sum_probs=167.4

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchh--hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEM--VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI--YKLNRDNESVLY  118 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~--l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~  118 (600)
                      .+++||||+||+.|+.++|++|++.+...  ....|..|.||||+||..|+.++|++|++.+++..  .. +..+.||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i-~~~~~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-QAENYHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH-SHHHHHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCCCCHHH
Confidence            34579999999999999999999987621  22345678899999999999999999999996421  11 112299999


Q ss_pred             HHHHhCCHHHHHHHHhCCccccc--ccCCCChHHHHHH-hcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHH
Q 007515          119 VACERGRLDVAKQLLNYSSLLIL--EVDGLTTSLHVSA-MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI  195 (600)
Q Consensus       119 ~A~~~g~~e~v~~Ll~~~~~~~~--~~~~~~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  195 (600)
                      +|+..|+.+++++|++++++++.  .+..|.||||.|+ ..|+.+++++|++.+.        .|.||||+|+..|+.++
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTH
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHH
Confidence            99999999999999999998765  6666789999999 9999999999998553        27899999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHcC---------------------------CHHHHHHHHhccccc----cccc
Q 007515          196 TRELLKLDPDLSSLPDNEGRTPLHWAAIKG---------------------------RINIIDEILSLNLQS----AEMR  244 (600)
Q Consensus       196 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g---------------------------~~~~v~~Ll~~~~~~----~~~~  244 (600)
                      +++|++.+++... .    .++++.|+.+|                           ..+.+++|++.....    ....
T Consensus       241 v~lL~~~ga~~~~-~----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~  315 (376)
T 2aja_A          241 NPFIARHVNRLKE-M----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI  315 (376)
T ss_dssp             HHHHHHHHHHHHH-H----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred             HHHHHhcCccccc-c----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence            9999998765421 1    11233333333                           344555555432110    1122


Q ss_pred             cccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHH
Q 007515          245 TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  303 (600)
Q Consensus       245 ~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L  303 (600)
                      ...+.|+||+|+..|+.+++++|++.+      ..+|..|+|++.+|-..|..++++.-
T Consensus       316 ~n~~~~~L~~A~~~g~~e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~  368 (376)
T 2aja_A          316 PGDANELLRLALRLGNQGACALLLSIP------SVLALTKANNYYINETGGRLDLRAVA  368 (376)
T ss_dssp             TTCCCHHHHHHHHHTCTTHHHHHTTSH------HHHHSCC-------------------
T ss_pred             CCCccHHHHHHHHcCcHHHHHHHHcCh------HHHHHHHHhccccccccccccHHHHH
Confidence            345678999999999999999999863      44678899999999999988877653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=4.1e-26  Score=207.34  Aligned_cols=157  Identities=22%  Similarity=0.303  Sum_probs=114.2

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCC
Q 007515          147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR  226 (600)
Q Consensus       147 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  226 (600)
                      .+|||.|+..|+.++++.|++.+.++. ..|..|+||||+|+. |+.+++++|++.|+++.. .+..|.||||+|+..|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTC
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCC
Confidence            457777777777777777777666654 566777777777777 777777777777777654 67777777777777777


Q ss_pred             HHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhc
Q 007515          227 INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL  306 (600)
Q Consensus       227 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  306 (600)
                      .++++.|++.+ ..++.+|..|+||||+|+..++.+++++|++....  .++.+|..|+||||+|+..++.+++++|+++
T Consensus        83 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           83 LDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            77777777765 45666677777777777777777777777776321  2577778888888888888888888888888


Q ss_pred             CCC
Q 007515          307 GVD  309 (600)
Q Consensus       307 gad  309 (600)
                      |||
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            775

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4e-26  Score=208.65  Aligned_cols=162  Identities=23%  Similarity=0.324  Sum_probs=120.6

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhc
Q 007515          179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  258 (600)
Q Consensus       179 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~  258 (600)
                      .|.||||.|+..|+.++++.|++.++++.. .|..|.||||+|+..|+.+++++|++.+ ..++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHc
Confidence            466777777777777777777777766544 5667777777777777777777777765 45566667777777777777


Q ss_pred             CchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHH
Q 007515          259 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVP  338 (600)
Q Consensus       259 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~  338 (600)
                      ++.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||+++|..    .++.++++
T Consensus        80 ~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~  152 (167)
T 3v31_A           80 GYTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA----LGYRSVQQ  152 (167)
T ss_dssp             TCHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHH
T ss_pred             CCHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCcHHHHH
Confidence            777777777776   45677788888888888888888888888888888888888888888888543    45677888


Q ss_pred             HHHHhcccccC
Q 007515          339 ALEEAGARRCD  349 (600)
Q Consensus       339 ~L~~~ga~~~~  349 (600)
                      +|++++++...
T Consensus       153 ~L~~~~~~~~~  163 (167)
T 3v31_A          153 VIESHLLKLLQ  163 (167)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHHHHH
Confidence            88887766543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4.6e-26  Score=208.24  Aligned_cols=158  Identities=23%  Similarity=0.281  Sum_probs=107.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER  123 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  123 (600)
                      .|.||||.||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence            466777777777777777777777655 66677777777777777777777777777766553 2355666666666666


Q ss_pred             CCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC
Q 007515          124 GRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD  203 (600)
Q Consensus       124 g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  203 (600)
                      |+.+++++|++++.+                                 +. ..|..|.||||+|+..|+.+++++|+++|
T Consensus        80 ~~~~~v~~Ll~~g~~---------------------------------~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD---------------------------------VN-EYDWNGGTPLLYAVHGNHVKCVKMLLESG  125 (167)
T ss_dssp             TCHHHHHHHHHHTCC---------------------------------TT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCC---------------------------------CC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            666666665555444                                 33 45666777777777777777777777777


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 007515          204 PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL  238 (600)
Q Consensus       204 ~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  238 (600)
                      +++.. .|..|.||||+|+..|+.+++++|++++.
T Consensus       126 ~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          126 ADPTI-ETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             CCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            77644 66777777777777777777777776653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=5.2e-26  Score=207.49  Aligned_cols=161  Identities=25%  Similarity=0.311  Sum_probs=132.2

Q ss_pred             CCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHh
Q 007515          176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  255 (600)
Q Consensus       176 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  255 (600)
                      .|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHH
Confidence            35667888888888888888888888665444556777888888888888888888888876 45677788888888888


Q ss_pred             HhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhh
Q 007515          256 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ  335 (600)
Q Consensus       256 v~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~  335 (600)
                      +..++.+++++|++.   +..+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|    .. ++.+
T Consensus        83 ~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a----~~-~~~~  154 (165)
T 3twr_A           83 CSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV----KD-GDTD  154 (165)
T ss_dssp             HHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS----CT-TCHH
T ss_pred             HHcCcHHHHHHHHhC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH----hc-CChH
Confidence            888888888888886   567888999999999999999999999999999999999999999999984    33 5678


Q ss_pred             HHHHHHHhcc
Q 007515          336 IVPALEEAGA  345 (600)
Q Consensus       336 i~~~L~~~ga  345 (600)
                      ++++|++.||
T Consensus       155 i~~~L~~~gA  164 (165)
T 3twr_A          155 IQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHhhccc
Confidence            9999998876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=1.4e-25  Score=205.55  Aligned_cols=158  Identities=28%  Similarity=0.400  Sum_probs=106.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      ...+.|+||.||+.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHH
Confidence            34567888888888888888888888776 67778888888888888888888888888877663 34667777777777


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHh
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      ..|+.+++++|++++.+++..                                  |..|.||||+|+..|+.+++++|++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~----------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~  134 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNAN----------------------------------DMEGHTPLHLAAMFGHLEIVEVLLK  134 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC----------------------------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCC----------------------------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777777777777766655433                                  4445555555555555555555555


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007515          202 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL  236 (600)
Q Consensus       202 ~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  236 (600)
                      +|+++.. .|..|.||||+|+..|+.+++++|++.
T Consensus       135 ~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          135 NGADVNA-QDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             cCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            5555433 455555555555555555555555543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=7.8e-26  Score=209.37  Aligned_cols=161  Identities=20%  Similarity=0.252  Sum_probs=95.7

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcC
Q 007515          180 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  259 (600)
Q Consensus       180 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~  259 (600)
                      +.+|||.||..|+.++++.|++.+.......|..|.||||+|+..|+.+++++|++.+ ..++..|..|+||||+|+..+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            4455555555555555555555543333335555555555555555555555555554 344445555556666666666


Q ss_pred             chhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHH
Q 007515          260 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA  339 (600)
Q Consensus       260 ~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~  339 (600)
                      +.+++++|++.   +.++|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||+++|    ...+..+++++
T Consensus        84 ~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A----~~~~~~~~~~~  156 (179)
T 3f6q_A           84 HRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA----KAPLRELLRER  156 (179)
T ss_dssp             CHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS----CHHHHHHHHHH
T ss_pred             CHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH----HHHHHHHHHHH
Confidence            66666666554   445666666777777777777777777777777777777777777777763    33455666777


Q ss_pred             HHHhccccc
Q 007515          340 LEEAGARRC  348 (600)
Q Consensus       340 L~~~ga~~~  348 (600)
                      |++.|++..
T Consensus       157 L~~~g~~~~  165 (179)
T 3f6q_A          157 AEKMGQNLN  165 (179)
T ss_dssp             HHHTTCCCS
T ss_pred             HHHhhcCcc
Confidence            777776654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=3.3e-25  Score=203.11  Aligned_cols=153  Identities=31%  Similarity=0.442  Sum_probs=70.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 007515          148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI  227 (600)
Q Consensus       148 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  227 (600)
                      ++|+.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|++.|+++.. .|..|.||||+|+..|+.
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCH
Confidence            34444444444444444444444433 3444455555555555555555555555444432 344445555555555555


Q ss_pred             HHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhc
Q 007515          228 NIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL  306 (600)
Q Consensus       228 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  306 (600)
                      +++++|++.+ ...+..|..|+||||+|+..++.+++++|++.   +.+++.+|..|.||||+|+..++.+++++|++.
T Consensus        94 ~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           94 EIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN---GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            5555554443 23333344444444444444444444444443   233444444444444444444444444444443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=2.1e-25  Score=206.48  Aligned_cols=167  Identities=21%  Similarity=0.293  Sum_probs=154.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      +.++||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.|+++.. .|..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcC
Confidence            456999999999999999999997776668899999999999999999999999999999866 7899999999999999


Q ss_pred             CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          226 RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      +.+++++|++.+ ..++..|..|.||||+|+..++.+++++|++.   +.+++.+|.+|.||||+|+..++.+++++|++
T Consensus        84 ~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           84 HRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999987 57788899999999999999999999999997   66789999999999999999999999999999


Q ss_pred             cCCCcccccCCC
Q 007515          306 LGVDVNAINRKG  317 (600)
Q Consensus       306 ~gad~n~~n~~G  317 (600)
                      .|++++..+.++
T Consensus       160 ~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 MGQNLNRIPYKD  171 (179)
T ss_dssp             TTCCCSCBCCCC
T ss_pred             hhcCcccCCccc
Confidence            999999887654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=7.1e-28  Score=232.40  Aligned_cols=196  Identities=18%  Similarity=0.165  Sum_probs=126.5

Q ss_pred             HHHHhCCcccccc---cCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCC
Q 007515          130 KQLLNYSSLLILE---VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL  206 (600)
Q Consensus       130 ~~Ll~~~~~~~~~---~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  206 (600)
                      +.|++++.+++..   ...+.||||.|+..|+.++++.|++.+.+++ ..|..|+||||+||..|+.+++++|++.|+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            3445544443322   2223456677777777777777777666654 56777777777777777777777777777776


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-ccccchhhHh--HhcCchhHHHHHHHhcccccccCCCCCC
Q 007515          207 SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRT-IHGETVLHLT--VKNNQYEAVKYLMETLNITKLANMPDND  283 (600)
Q Consensus       207 ~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--v~~~~~~iv~~Ll~~~~~~~~~n~~d~~  283 (600)
                      .. .|..|+||||+|+..|+.+++++|++.+. +++..+ ..|+||||+|  +..++.+++++|++.   +.+++.+|..
T Consensus        81 n~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~~  155 (229)
T 2vge_A           81 NS-PDSHGWTPLHCAASCNDTVICMALVQHGA-AIFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNSG  155 (229)
T ss_dssp             TC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGGG
T ss_pred             CC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccCC
Confidence            54 66777777777777777777777777664 344443 5777777777  777777777777776   5567777777


Q ss_pred             CChHhHHHHhCCcHHHHHHHHhcCCC--cccccCCCCCHHHHHhhhcCCcchhhHHH
Q 007515          284 GNTILHLATAGKLTTMVIYLLKLGVD--VNAINRKGYTALDVVESDASNSGALQIVP  338 (600)
Q Consensus       284 G~T~Lh~A~~~~~~~iv~~Ll~~gad--~n~~n~~G~T~l~~a~~~a~~~~~~~i~~  338 (600)
                      |.||+|.++....   .++|++.|++  ++.+|..|.|||++|    ...++.++++
T Consensus       156 ~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A----~~~g~~~~v~  205 (229)
T 2vge_A          156 AVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWA----ALHGQEGYVP  205 (229)
T ss_dssp             EEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEE----EETTEEEEEE
T ss_pred             chHHHHHHhhccc---cccCccccccccccccCCCcccHHHHH----HHcCCcceee
Confidence            7777775544432   2466677777  667777788888874    3344555443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.4e-25  Score=204.66  Aligned_cols=159  Identities=24%  Similarity=0.266  Sum_probs=89.2

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      +..|+|+||.|++.|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHH
Confidence            34456667777777777777776665555455666666677777776666666666666666553 33556666666666


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHh
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      ..|+.+++++|++++.+++..+..+.||||+|+..|+.+++++|++.+.++. .+|..|.||||+|+. ++.+++++|++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            6666666666666655554444444444444444444444444444444433 344444444444333 44444444444


Q ss_pred             cC
Q 007515          202 LD  203 (600)
Q Consensus       202 ~~  203 (600)
                      .|
T Consensus       162 ~g  163 (165)
T 3twr_A          162 DA  163 (165)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=5.7e-25  Score=197.95  Aligned_cols=150  Identities=18%  Similarity=0.240  Sum_probs=91.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCC
Q 007515           46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGR  125 (600)
Q Consensus        46 ~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  125 (600)
                      .|+||.|++.|+.+++++|++.+++. . .+..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCh
Confidence            45666666666666666666666542 2 45566666666666666666666666655542 235555566655555555


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCC
Q 007515          126 LDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD  205 (600)
Q Consensus       126 ~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  205 (600)
                      .+++++|++++.+++                                  ..|..|+||||+|+..|+.+++++|+++|++
T Consensus        80 ~~~v~~Ll~~g~~~~----------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  125 (153)
T 1awc_B           80 ANIVEVLLKHGADVN----------------------------------AKDMLKMTALHWATEHNHQEVVELLIKYGAD  125 (153)
T ss_dssp             HHHHHHHHTTTCCTT----------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCC----------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            555555555544433                                  4455666666666666666666666666666


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 007515          206 LSSLPDNEGRTPLHWAAIKGRINIIDEI  233 (600)
Q Consensus       206 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~L  233 (600)
                      +.. +|..|.||||+|+..|+.+++++|
T Consensus       126 ~~~-~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          126 VHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            543 566666666666666666666554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=1e-26  Score=224.27  Aligned_cols=204  Identities=16%  Similarity=0.065  Sum_probs=167.5

Q ss_pred             HHHHHhCCcccc--cccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccc
Q 007515           95 VKLFVGIDPSVI--YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEF  172 (600)
Q Consensus        95 v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~  172 (600)
                      ++.|++.+.+..  ...+..+.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.+.++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            456777776553  344567788999999999999999999999999888888999999999999999999999999887


Q ss_pred             cccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhccccccccccccccc
Q 007515          173 AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA--AIKGRINIIDEILSLNLQSAEMRTIHGET  250 (600)
Q Consensus       173 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A--a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  250 (600)
                      + ..|..|+||||+|+..|+.+++++|++.|+++....+.+|.||||+|  +..|+.+++++|++.+ .+.+..|..|.+
T Consensus        81 n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~  158 (229)
T 2vge_A           81 N-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVY  158 (229)
T ss_dssp             T-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEE
T ss_pred             C-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchH
Confidence            6 78899999999999999999999999999998774457999999999  9999999999999988 467778889999


Q ss_pred             hhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH
Q 007515          251 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  304 (600)
Q Consensus       251 ~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  304 (600)
                      ++|.++..+..   ++|++.+ ....++.+|.+|+||||+|+..|+.++|+.++
T Consensus       159 ~l~~~~~~~~~---~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          159 ALWDYSAEFGD---ELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             ESSCBCCSSTT---BCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHHhhcccc---ccCcccc-ccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            99977666543   3444442 12237889999999999999999988876533

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=9.8e-25  Score=196.41  Aligned_cols=151  Identities=23%  Similarity=0.268  Sum_probs=132.9

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE   89 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~   89 (600)
                      ..+.|+.|+..|+.+.++.+++.+...   ..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC---CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            457899999999999999999987653   2477899999999999999999999999887 788999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHH
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL  165 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L  165 (600)
                      |+.+++++|++.++++. ..|..|.||||+|+..|+.+++++|++++.+++..+..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999998874 4588999999999999999999999999888776666677777777777777777665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=7.4e-25  Score=197.73  Aligned_cols=153  Identities=20%  Similarity=0.159  Sum_probs=91.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      +.|+||.|+..|+.+++++|++..+..++..|..|.||||+ +..|+.+++++|++.++++. ..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence            45777777777777777777777433466777777777777 77777777777777776653 34666777777777777


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHh
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      +.+++++|++++.+++..+..|.||||.|+..|+.+++++|++. .++. ..|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            77777666666655544444444444444444444444444444 2222 334444444444444444444444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.4e-24  Score=195.97  Aligned_cols=153  Identities=26%  Similarity=0.320  Sum_probs=95.9

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCC
Q 007515           79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH  158 (600)
Q Consensus        79 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (600)
                      +.||||.|+..|+.++++.|++.........+..|.||||+ +..|+.+++++|++++.+++..+..|.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45778888888888888877776333344556777777777 77777777777777776666555555556666666666


Q ss_pred             HHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 007515          159 LDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS  235 (600)
Q Consensus       159 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~  235 (600)
                      .++++.|++.+.++. ..|..|+||||+|+..|+.+++++|++. +++.. .|.+|.||||+|+..|+.++++.|++
T Consensus        81 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            666666666555544 4455566666666666666666666655 44432 45555666666666666666655554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=3.7e-26  Score=222.07  Aligned_cols=214  Identities=16%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhc
Q 007515           77 EKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA  156 (600)
Q Consensus        77 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~  156 (600)
                      ..|.||||.|++.|+.++++.|++++.++..  +..|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3466777777777777777777766666532  34556666666666666666666666665555555555555555555


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHH
Q 007515          157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR-TPLHWA--AIKGRINIIDEI  233 (600)
Q Consensus       157 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpL~~A--a~~g~~~~v~~L  233 (600)
                      |+.+++++|++.+.+++ ..|..|+||||+|+..|+.+++++|+++|+++.. .+..|. ||||+|  +..|+.+++++|
T Consensus        81 g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             TCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-ecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            55555555555555543 4455555555555555555555555555555543 233332 555555  444555555555


Q ss_pred             HhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC----
Q 007515          234 LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD----  309 (600)
Q Consensus       234 l~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad----  309 (600)
                      ++.+. ..+..+..                           ......|..+.++++++...|.  +++.|.+.+.+    
T Consensus       159 l~~~a-~~~~~~~~---------------------------~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~W  208 (239)
T 1ycs_B          159 YGVQE-KMGIMNKG---------------------------VIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEW  208 (239)
T ss_dssp             HHHHH-HTTTTGGG---------------------------EEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSE
T ss_pred             HHhhh-cccccccc---------------------------eEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCE
Confidence            55442 12111111                           1112235566777777766664  33334444433    


Q ss_pred             --cccccCCCCCHHHHH
Q 007515          310 --VNAINRKGYTALDVV  324 (600)
Q Consensus       310 --~n~~n~~G~T~l~~a  324 (600)
                        ....++.|.+|.+++
T Consensus       209 w~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          209 WWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             EEEEETTEEEEEEGGGE
T ss_pred             EEEEECCcEEEeehHHe
Confidence              234566777887763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=1.1e-24  Score=211.72  Aligned_cols=162  Identities=16%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  122 (600)
                      ..|.||||.|++.|+.+.++.|++.+.+ ++. +..|.||||.|+..|+.+++++|++.++++ ...|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            4689999999999999999999999987 443 477899999999999999999999999876 4558999999999999


Q ss_pred             hCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCC-hHHHHH--HhcCcHHHHHHH
Q 007515          123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGH-TPLHLS--CSKGHLEITREL  199 (600)
Q Consensus       123 ~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A--~~~g~~~iv~~L  199 (600)
                      .|+.+++++|++++.+++..+..|.||||+|+..|+.+++++|++.+.++. ..|..|. ||||+|  +..|+.+++++|
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            999999999999999999888899999999999999999999999999987 5555555 999999  788999999999


Q ss_pred             HhcCCCCCC
Q 007515          200 LKLDPDLSS  208 (600)
Q Consensus       200 l~~~~~~~~  208 (600)
                      ++.+++...
T Consensus       159 l~~~a~~~~  167 (239)
T 1ycs_B          159 YGVQEKMGI  167 (239)
T ss_dssp             HHHHHHTTT
T ss_pred             HHhhhcccc
Confidence            999988654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=6.7e-24  Score=191.63  Aligned_cols=143  Identities=16%  Similarity=0.164  Sum_probs=114.0

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccc-hhh
Q 007515          175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET-VLH  253 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~Lh  253 (600)
                      ..+..|.||||+|+..|+.+++++|++.|+++.. .|..|.||||+|+ .|+.+++++|++.+ ..++.+|..|+| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHHH
Confidence            4567899999999999999999999999988765 7889999999985 89999999999886 567888889998 999


Q ss_pred             HhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHH
Q 007515          254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV  323 (600)
Q Consensus       254 ~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~  323 (600)
                      +|+..|+.+++++|++.   +.+++.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||.+-
T Consensus        84 ~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            99999999999999987   67789999999999999999999999999999999999999999999764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=4.2e-23  Score=191.92  Aligned_cols=160  Identities=15%  Similarity=0.056  Sum_probs=123.7

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcH----HHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Q 007515          148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL----EITRELLKLDPDLSSLPDNEGRTPLHWAAI  223 (600)
Q Consensus       148 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  223 (600)
                      ++|+.|+..|+.+.++.+++.+.+..  .|..|+||||+|+..|+.    +++++|+++|++++. +|.+|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-CCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHH
Confidence            47888888899888888887765432  236799999999998875    589999999999866 78899999999999


Q ss_pred             cCC------HHHHHHHHhcccccccccccccc-chhhHhHhcC-----chhHHHHHHH-hcccccccCCCCCCCChHhHH
Q 007515          224 KGR------INIIDEILSLNLQSAEMRTIHGE-TVLHLTVKNN-----QYEAVKYLME-TLNITKLANMPDNDGNTILHL  290 (600)
Q Consensus       224 ~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~Av~~~-----~~~iv~~Ll~-~~~~~~~~n~~d~~G~T~Lh~  290 (600)
                      .|+      .++++.|++.+ .+++.+|..|+ ||||+|+..+     ..+++++|++ .   +.++|.+|..|.||||+
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCHHHH
T ss_pred             cCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCHHHH
Confidence            887      57788888876 57777888888 8888888744     3457777776 4   56677788888888888


Q ss_pred             HHhCCcHHHHHHHHhcCCCccccc
Q 007515          291 ATAGKLTTMVIYLLKLGVDVNAIN  314 (600)
Q Consensus       291 A~~~~~~~iv~~Ll~~gad~n~~n  314 (600)
                      |++.++.+++++|.+...+.+.++
T Consensus       161 A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          161 VKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHcCCHHHHHHHHHHHHHHhccc
Confidence            888888888887776655544443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=7.6e-23  Score=180.12  Aligned_cols=128  Identities=16%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCC-CChHh
Q 007515          210 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND-GNTIL  288 (600)
Q Consensus       210 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~-G~T~L  288 (600)
                      .+..|.||||.|+..|+.+++++|++.+ ..++.+|..|+||||+|+. ++.+++++|++.   +..++.+|.. |+|||
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~---g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLH---GAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH---TCCSSCCBTTTTBCHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC---CCCCCCcCCCCCCCHH
Confidence            4555666666666666666666666554 3445555566666666666 666666666655   4455666666 66666


Q ss_pred             HHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       289 h~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      |+|+..++.+++++|+++|++++.+|..|.|||++|..    .++.+++++|+++||+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE----QGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHH----HTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            66666666666666666666666666666666666443    3445666666666653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=2.2e-22  Score=177.11  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=121.5

Q ss_pred             ccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc-ccchh
Q 007515          174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH-GETVL  252 (600)
Q Consensus       174 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~L  252 (600)
                      +..|..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+. |+.+++++|++.+ ..++.+|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCHH
Confidence            37788999999999999999999999999999865 78999999999999 9999999999987 467788888 99999


Q ss_pred             hHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       253 h~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                      |+|+..++.+++++|++.   +.+++.+|..|+||||+|+..++.+++++|+++|+|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRA---GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHT---CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999987   667899999999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.4e-21  Score=168.86  Aligned_cols=126  Identities=38%  Similarity=0.612  Sum_probs=93.1

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhc
Q 007515          179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  258 (600)
Q Consensus       179 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~  258 (600)
                      +|+||||+|+..|+.+++++|++.++++.. .+..|.||||.|+..|+.+++++|++.+ ...+.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence            477788888888888888888887777654 5677778888888888888877777765 34556666777777777777


Q ss_pred             CchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          259 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       259 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                      ++.+++++|++.   +..++.+|..|+||||+|+..++.+++++|+++|+|
T Consensus        79 ~~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            777777777765   455667777777777777777777777777777765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=1.1e-22  Score=189.21  Aligned_cols=157  Identities=13%  Similarity=0.045  Sum_probs=136.0

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHhccccccccccccccchhhHh
Q 007515          180 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI----NIIDEILSLNLQSAEMRTIHGETVLHLT  255 (600)
Q Consensus       180 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  255 (600)
                      +.++|+.|+..|+.+.++.+++.+.+.  ..+..|+||||+|+.+|+.    +++++|++.+ .+++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCcHHHHH
Confidence            568999999999999999999887543  1236799999999999985    5899999987 67888999999999999


Q ss_pred             HhcCc------hhHHHHHHHhcccccccCCCCCCCC-hHhHHHHhCC-----cHHHHHHHHh-cCCCcccccCCCCCHHH
Q 007515          256 VKNNQ------YEAVKYLMETLNITKLANMPDNDGN-TILHLATAGK-----LTTMVIYLLK-LGVDVNAINRKGYTALD  322 (600)
Q Consensus       256 v~~~~------~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A~~~~-----~~~iv~~Ll~-~gad~n~~n~~G~T~l~  322 (600)
                      +..++      .+++++|++.   +.++|.+|..|+ ||||+|+..+     +.+++++|++ +|+|+|.+|..|.||||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~---Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEK---GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT---TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHC---CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            99887      5789999987   778999999999 9999999954     4569999998 99999999999999999


Q ss_pred             HHhhhcCCcchhhHHHHHHHhccc
Q 007515          323 VVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       323 ~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      +|.    ..++.+++++|.+...+
T Consensus       160 ~A~----~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          160 FVK----RCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHH----TTTCHHHHHHHHHHHHH
T ss_pred             HHH----HcCCHHHHHHHHHHHHH
Confidence            954    45777889888877644

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=6e-22  Score=178.75  Aligned_cols=140  Identities=17%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCc-HHHHH
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNES-VLYVA  120 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~A  120 (600)
                      +..|.|+||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+ .|+.+++++|++.+.++. ..+..|.| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHH
Confidence            34455555555555555555555555544 4555555555555553 555555555555554442 22444444 55555


Q ss_pred             HHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHH
Q 007515          121 CERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL  200 (600)
Q Consensus       121 ~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  200 (600)
                      +..|+.+++++|++++.+++                                  .+|..|+||||+|+..|+.+++++|+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~----------------------------------~~d~~g~tpl~~A~~~~~~~~v~~Ll  131 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLD----------------------------------VRDAWGRLPVDLAEELGHRDVARYLR  131 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSS----------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             HHCCCHHHHHHHHHcCCCCc----------------------------------ccCCCCCCHHHHHHHhCHHHHHHHHH
Confidence            54444444444444444333                                  34445555555555555555555555


Q ss_pred             hcCCCCCCCCCCCCCCHHH
Q 007515          201 KLDPDLSSLPDNEGRTPLH  219 (600)
Q Consensus       201 ~~~~~~~~~~d~~g~tpL~  219 (600)
                      ++|+++.. .+..|.||.+
T Consensus       132 ~~ga~~~~-~~~~g~t~~~  149 (156)
T 1bi7_B          132 AAAGGTRG-SNHARIDAAE  149 (156)
T ss_dssp             SCC----------------
T ss_pred             HcCCCCCc-cCcCcCcccc
Confidence            55555433 4455555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=2.1e-21  Score=170.83  Aligned_cols=126  Identities=22%  Similarity=0.254  Sum_probs=96.7

Q ss_pred             CCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhH
Q 007515          177 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV  256 (600)
Q Consensus       177 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av  256 (600)
                      ...+.||||+|+..|+.+++++|++.|+++.. .|..|.||||+|+..|+.++++.|++.+ .+++..|..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            44577888888888888888888888877654 6777888888888888888888888765 456667777778888888


Q ss_pred             hcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC
Q 007515          257 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  307 (600)
Q Consensus       257 ~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  307 (600)
                      ..++.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~---g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKH---GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHc---CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88888888888776   5567777888888888888888888888887765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=1.9e-21  Score=171.35  Aligned_cols=127  Identities=24%  Similarity=0.346  Sum_probs=94.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhH
Q 007515          210 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  289 (600)
Q Consensus       210 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  289 (600)
                      +|.+|.||||+|+..|+.+++++|++.+ ..++..|..|+||||+|+..++.+++++|++.   +.+++.+|..|+||||
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCGGGCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCCCCCCHHH
Confidence            5666777777777777777777777655 34556666777777777777777777777765   5567888889999999


Q ss_pred             HHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhc
Q 007515          290 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG  344 (600)
Q Consensus       290 ~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~g  344 (600)
                      +|+..++.+++++|+++|++++.+|..|.||+++    +...+..+++.+|.+.+
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~----A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY----TDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG----CCCHHHHHHHSCC----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH----HhhccHHHHHhhccccc
Confidence            9999999999999999999999999999999998    44555666666655544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=6.4e-21  Score=167.69  Aligned_cols=125  Identities=22%  Similarity=0.214  Sum_probs=93.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      ...+.|+||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..|..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHH
Confidence            34578888888888888888888888776 67788888888888888888888888888877764 34777888888888


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhc
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA  168 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~  168 (600)
                      ..|+.+++++|++++.+++..+..|.||||+|+..|+.+++++|++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            88888888888877776655555555566666666666666655543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.85  E-value=1.5e-20  Score=162.37  Aligned_cols=122  Identities=37%  Similarity=0.491  Sum_probs=75.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      |.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHcC
Confidence            66777777777777777777777665 56666777777777777777777777777666553 33556666666666666


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhc
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA  168 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~  168 (600)
                      +.+++++|++++.+++..+..+.||||.|+..++.+++++|+++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            66666666666555443333344444444444444444444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=4e-22  Score=194.09  Aligned_cols=44  Identities=30%  Similarity=0.431  Sum_probs=21.5

Q ss_pred             CCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 007515          178 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA  222 (600)
Q Consensus       178 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  222 (600)
                      ..|+||||+|+..|+.+++++|+++|+++.. .|..|.||||+|+
T Consensus       109 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~  152 (244)
T 3ui2_A          109 RGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAR  152 (244)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHH
Confidence            3445555555555555555555555544432 4444555555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1.3e-20  Score=183.39  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCccccccc-CCCChHHHHHHhc
Q 007515           78 KMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV-DGLTTSLHVSAMA  156 (600)
Q Consensus        78 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~-~~~~t~Lh~A~~~  156 (600)
                      .|.||||+|++.|+.++++.|++ +.++ ...|..|.||||+|+..|+.+++++|++++.+++..+ ..|.||||.|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            44555555555555555555555 3333 2234555555555555555555555555555554443 3455555555555


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007515          157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL  236 (600)
Q Consensus       157 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  236 (600)
                      |+.++++.|++.+.++. ..|..|+||||+|+..++.                  ..+.+|||+|+..|+.++++.|++.
T Consensus       122 g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          122 VRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence            55555555555555544 4556666666666543222                  2356677777777777777777664


Q ss_pred             c
Q 007515          237 N  237 (600)
Q Consensus       237 ~  237 (600)
                      .
T Consensus       183 ~  183 (244)
T 3ui2_A          183 V  183 (244)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=1.4e-20  Score=174.67  Aligned_cols=140  Identities=19%  Similarity=0.137  Sum_probs=112.2

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 007515           43 GSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACE  122 (600)
Q Consensus        43 ~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  122 (600)
                      ..|.||||.|+..|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            457899999999999999999998 554 788888999999999999999999999998888765544788888888888


Q ss_pred             hCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhc
Q 007515          123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL  202 (600)
Q Consensus       123 ~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  202 (600)
                      .|+.+++++|++++.+++..+..|.||||+|+..++                  ...+.+||++|+..|+.++++.|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence            888888888888888887777777788888876332                  12456778888877777777777654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=4.7e-21  Score=183.59  Aligned_cols=139  Identities=19%  Similarity=0.269  Sum_probs=101.0

Q ss_pred             CCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHh
Q 007515          176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  255 (600)
Q Consensus       176 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  255 (600)
                      .|.+|.||||+||..|+.++++.|++.++++.. .|..|.||||+|+..|+.++++.|++.....++.+|..|+||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            356788999999999999999999999888765 7888999999999999999999998875566777777888888888


Q ss_pred             HhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCC
Q 007515          256 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY  318 (600)
Q Consensus       256 v~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~  318 (600)
                      +..|+.+++++|++.   +..++.+|.+|+||||+|+..++.++++.|++.|++.+..|.+|.
T Consensus       148 ~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          148 AWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            888888888888776   556777888888888888888888888888888887777766543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=7.9e-21  Score=167.29  Aligned_cols=128  Identities=22%  Similarity=0.295  Sum_probs=103.5

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhH
Q 007515          175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL  254 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  254 (600)
                      .+|.+|+||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++.+ ...+..|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence            4677888888888888888888888888888755 6788888888888888888888888876 4667778888888888


Q ss_pred             hHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC
Q 007515          255 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  307 (600)
Q Consensus       255 Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  307 (600)
                      |+..++.+++++|++.   +.+++.+|.+|+||||+|+..+..+++++|.+.+
T Consensus        83 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            8888888888888876   5668888888999999888888888777666544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=4.8e-20  Score=159.02  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHH
Q 007515          213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT  292 (600)
Q Consensus       213 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~  292 (600)
                      .|.||||.|+..|+.++++.|++.+. .++.+|..|+||||+|+..++.+++++|++.   +.++|.+|.+|+||||+|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHHH
Confidence            44555555555555555555555442 3445555566666666666666666666654   4457778888999999999


Q ss_pred             hCCcHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       293 ~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      ..++.+++++|+++|++++.+|.+|.||+++|
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            99999999999988999999999999999885

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.81  E-value=3.2e-20  Score=172.19  Aligned_cols=111  Identities=22%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhc
Q 007515           77 EKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA  156 (600)
Q Consensus        77 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~  156 (600)
                      ..|.||||+|+..|+.++++.|++ +.++ ...|..|.||||+|+..|+.+++++|++++.+++..+             
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-------------  106 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-------------  106 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-------------
Confidence            344555555555555555555554 3333 2234444444444444444444444444444333222             


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Q 007515          157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAI  223 (600)
Q Consensus       157 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  223 (600)
                                          +..|+||||+|+..|+.+++++|+++|+++.. +|.+|.||||+|+.
T Consensus       107 --------------------~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~  152 (183)
T 3deo_A          107 --------------------MRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELARE  152 (183)
T ss_dssp             --------------------SSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHH
T ss_pred             --------------------CCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHH
Confidence                                24455555555555555555555555555433 45555555555554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.80  E-value=1.6e-19  Score=181.15  Aligned_cols=143  Identities=20%  Similarity=0.104  Sum_probs=121.2

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhCCcccccc-----cCCCCCcHHHHHHHh---CCHHHHHHHHhCCcccccccCCCCh
Q 007515           77 EKMETPLHEACREGRLNFVKLFVGIDPSVIYK-----LNRDNESVLYVACER---GRLDVAKQLLNYSSLLILEVDGLTT  148 (600)
Q Consensus        77 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~e~v~~Ll~~~~~~~~~~~~~~t  148 (600)
                      ..+.++|+.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|++++++++..+..|.|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T  228 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  228 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            33557899999999999999999999887553     578899999999997   8999999999999999888888999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 007515          149 SLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI  227 (600)
Q Consensus       149 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  227 (600)
                      |||+|+..|+.+++++|++.++++. .+|..|.||||+|+..|+.+++++|++.+++       .|.||||+|+..|+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            9999999999999999999998886 7899999999999999999999999999887       378999999998874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=1.5e-19  Score=155.81  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 007515           42 PGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVAC  121 (600)
Q Consensus        42 ~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  121 (600)
                      +..|+|+||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..|..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHH
Confidence            34577888888888888888888887776 67778888888888888888888888888877763 44777888888888


Q ss_pred             HhCCHHHHHHHHhCCcccccccCCCChHHHHHH
Q 007515          122 ERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSA  154 (600)
Q Consensus       122 ~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~  154 (600)
                      ..|+.+++++|++++.+++..+..|.||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            888888888887777776666666666666663

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.79  E-value=3.7e-19  Score=178.43  Aligned_cols=142  Identities=19%  Similarity=0.185  Sum_probs=114.1

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCcccccc-----CCCCCChHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCC
Q 007515          145 GLTTSLHVSAMAGHLDIVKELLEARQEFAWK-----KDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRT  216 (600)
Q Consensus       145 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t  216 (600)
                      ...++|+.|+..|+.+.++.|++.+.++...     .|..|+||||+|+..   ++.+++++|++.|++++. .|.+|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCCC
Confidence            3456899999999999999999888887632     588899999999987   889999999999998765 7888999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCc
Q 007515          217 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL  296 (600)
Q Consensus       217 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  296 (600)
                      |||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++....         .|+||||+|+..|+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcCC
Confidence            999999999999999999876 56778888999999999999999999999987432         47899999998875


Q ss_pred             H
Q 007515          297 T  297 (600)
Q Consensus       297 ~  297 (600)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=8.4e-19  Score=173.81  Aligned_cols=192  Identities=17%  Similarity=0.134  Sum_probs=124.9

Q ss_pred             cCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcc-cccccCCCChHHHHH
Q 007515           75 ENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL-LILEVDGLTTSLHVS  153 (600)
Q Consensus        75 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~-~~~~~~~~~t~Lh~A  153 (600)
                      .|..+.++|+.+...||..+.+++...-+.........+....    .....-..+++...... .........++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            4566777888888888877766654432222110011111111    11111122233222111 111111223478888


Q ss_pred             HhcCCHHHHHHHHhcCccccc-----cCCCCCChHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC
Q 007515          154 AMAGHLDIVKELLEARQEFAW-----KKDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG  225 (600)
Q Consensus       154 ~~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  225 (600)
                      +..|+.+.++.+++.+.+...     ..|..|+||||+|+..   |+.+++++|+++|++++. +|..|+||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHcC
Confidence            888888888888888777532     3367788888888888   788888888888888765 6788888888888888


Q ss_pred             CHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcc
Q 007515          226 RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN  272 (600)
Q Consensus       226 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  272 (600)
                      +.++++.|++.+ .+++.+|..|+||||+|+..|+.+++++|++...
T Consensus       217 ~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          217 NAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            888888888866 5677788888888888888888888888888743

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=8.5e-19  Score=173.75  Aligned_cols=192  Identities=15%  Similarity=0.070  Sum_probs=89.9

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhCCccccc-ccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHH
Q 007515          109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLIL-EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLS  187 (600)
Q Consensus       109 ~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~-~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  187 (600)
                      .|..+.++++.+...|+..+.+++...-..... .+.......    .....-..+++...........+....++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            466777788888888887776665443222111 111111010    001111111221111111101111223567777


Q ss_pred             HhcCcHHHHHHHHhcCCCCCCC-----CCCCCCCHHHHHHHc---CCHHHHHHHHhccccccccccccccchhhHhHhcC
Q 007515          188 CSKGHLEITRELLKLDPDLSSL-----PDNEGRTPLHWAAIK---GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  259 (600)
Q Consensus       188 ~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~  259 (600)
                      +..|+.+.+..+++.|++....     .+..|.||||+|+..   |+.+++++|++.+ .+++.+|..|+||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHHHHHHHcC
Confidence            7777777777777776664321     245555666666555   5555555555544 233444444444444444444


Q ss_pred             chhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCC
Q 007515          260 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  308 (600)
Q Consensus       260 ~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  308 (600)
                      +.+++++|++.   +.+++.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus       217 ~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          217 NAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            44444444443   33344444444444444444444444444444443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=2.5e-19  Score=171.57  Aligned_cols=164  Identities=21%  Similarity=0.262  Sum_probs=93.6

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhC--------------chhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccc
Q 007515           41 VPGSLNTILHLTARFGHEELASEILKLC--------------PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI  106 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~--------------~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~  106 (600)
                      .+..+.++.+++++.|....+..+.+.+              ...++..+..|.||||+||..|+.+++++|++.+.++.
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  100 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN  100 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCCcc
Confidence            4445566666666666544332221111              01233445566777777777777777777777766653


Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHhC-CcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHH
Q 007515          107 YKLNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLH  185 (600)
Q Consensus       107 ~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  185 (600)
                       ..|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+.++. .+|..|.||||
T Consensus       101 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~  178 (222)
T 3ehr_A          101 -GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFD  178 (222)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHH
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHH
Confidence             3466677777777777777777777776 66665555555556666666666666666666655554 45556666666


Q ss_pred             HHHhcCcHHHHHHHHhcCCCC
Q 007515          186 LSCSKGHLEITRELLKLDPDL  206 (600)
Q Consensus       186 ~A~~~g~~~iv~~Ll~~~~~~  206 (600)
                      +|+..++.++++.|++.++..
T Consensus       179 ~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          179 MATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HCCSHHHHHHHC---------
T ss_pred             HhcchhHHHHHHHHhccchhh
Confidence            666666666666666655543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=4.2e-18  Score=174.79  Aligned_cols=146  Identities=15%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             CCCCCChHHHHHHhc-CcHHHHHHHHhcCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchh
Q 007515          176 KDLNGHTPLHLSCSK-GHLEITRELLKLDPDLSSLPD--NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVL  252 (600)
Q Consensus       176 ~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  252 (600)
                      .+..+.|+||.|+.. ++.++++.|++.|++++. .+  ..|.||||+|+..|+.+++++|++.+ .+++..|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHH
Confidence            344677899999998 999999999999998865 45  78899999999999999999999876 56778888999999


Q ss_pred             hHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcC---CCcccccCCCCCHHHHHhh
Q 007515          253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG---VDVNAINRKGYTALDVVES  326 (600)
Q Consensus       253 h~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g---ad~n~~n~~G~T~l~~a~~  326 (600)
                      |+|+..|+.+++++|++.   +.+++.+|.+|+||||+|+..++.+++++|++.+   ++....+..+.|+++++..
T Consensus       273 h~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          273 HHATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            999999999999999987   6678899999999999999999999999998654   5555677788999988654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=3e-18  Score=175.92  Aligned_cols=128  Identities=22%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHHc-CCHHHHHHHHhcccccccccc--ccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHh
Q 007515          212 NEGRTPLHWAAIK-GRINIIDEILSLNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL  288 (600)
Q Consensus       212 ~~g~tpL~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L  288 (600)
                      ..+.||||.|+.. |+.++++.|++.+ .+++..+  ..|.||||+|+..|+.+++++|++.   +.++|.+|..|+|||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~---Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQN---GANVNQADSAGRGPL  272 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCCCCCCCCHH
Confidence            3455666666666 6666666666655 3344444  5666666666666666666666665   455666666666666


Q ss_pred             HHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccc
Q 007515          289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  347 (600)
Q Consensus       289 h~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~  347 (600)
                      |+|+..|+.+++++|+++|++++.+|.+|.|||++|..    .++.+++++|+.++...
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~----~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME----TANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHC--
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCc
Confidence            66666666666666666666666666666666666432    34556666666665443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=1.9e-18  Score=146.93  Aligned_cols=108  Identities=34%  Similarity=0.402  Sum_probs=90.3

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhH
Q 007515          210 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  289 (600)
Q Consensus       210 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  289 (600)
                      +|.+|.||||+|+..|+.++++.|++.+ ..++..|..|.||||+|+..++.+++++|++.   +..++.+|..|+||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHH
Confidence            5677888888888888888888888766 35666777888888888888888888888876   5678889999999999


Q ss_pred             HHHhCCcHHHHHHHHhcCCCcccccCCCCCHH
Q 007515          290 LATAGKLTTMVIYLLKLGVDVNAINRKGYTAL  321 (600)
Q Consensus       290 ~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l  321 (600)
                      +|+..++.+++++|+++|+++|.++..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=7.9e-18  Score=137.26  Aligned_cols=93  Identities=34%  Similarity=0.486  Sum_probs=83.4

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHh
Q 007515           44 SLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER  123 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  123 (600)
                      +|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHc
Confidence            478999999999999999999999887 88899999999999999999999999999998874 4588999999999999


Q ss_pred             CCHHHHHHHHhCCcc
Q 007515          124 GRLDVAKQLLNYSSL  138 (600)
Q Consensus       124 g~~e~v~~Ll~~~~~  138 (600)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999998763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=7.8e-18  Score=137.28  Aligned_cols=92  Identities=36%  Similarity=0.537  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHh
Q 007515          214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA  293 (600)
Q Consensus       214 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~  293 (600)
                      |+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++.   +.+++.+|.+|+||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHH
Confidence            444444444444444444444433 23334444444444444444444445544443   33455566666666666666


Q ss_pred             CCcHHHHHHHHhcCCC
Q 007515          294 GKLTTMVIYLLKLGVD  309 (600)
Q Consensus       294 ~~~~~iv~~Ll~~gad  309 (600)
                      .++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            6666666666666653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.69  E-value=4.6e-17  Score=138.33  Aligned_cols=107  Identities=25%  Similarity=0.276  Sum_probs=90.0

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 007515           41 VPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVA  120 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  120 (600)
                      .+..|.|+||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..|..|.|||++|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            467789999999999999999999998877 78888889999999999999999999998888764 4578889999999


Q ss_pred             HHhCCHHHHHHHHhCCcccccccCCCChH
Q 007515          121 CERGRLDVAKQLLNYSSLLILEVDGLTTS  149 (600)
Q Consensus       121 ~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~  149 (600)
                      +..|+.+++++|++++++++.....+.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            99999999999999888888776666544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.59  E-value=3.4e-15  Score=125.65  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=81.2

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 007515           39 QTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLY  118 (600)
Q Consensus        39 ~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  118 (600)
                      ...+.+|.|+||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..|..|.||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHHH
Confidence            44567899999999999999999999999877 78889999999999999999999999999988864 45889999999


Q ss_pred             HHHHhCCHHHHHHH
Q 007515          119 VACERGRLDVAKQL  132 (600)
Q Consensus       119 ~A~~~g~~e~v~~L  132 (600)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999886

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.56  E-value=8.8e-15  Score=123.13  Aligned_cols=91  Identities=21%  Similarity=0.353  Sum_probs=58.2

Q ss_pred             cCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhH
Q 007515          175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL  254 (600)
Q Consensus       175 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  254 (600)
                      ..|.+|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++.+ ...+.+|..|+||||+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~-~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHHH
Confidence            4566677777777777777777777777766644 5666777777777777777777777654 3455555566666666


Q ss_pred             hHhcCchhHHHHH
Q 007515          255 TVKNNQYEAVKYL  267 (600)
Q Consensus       255 Av~~~~~~iv~~L  267 (600)
                      |+..++.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            6666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	600
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-30
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-28
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 5e-31
 Identities = 83/308 (26%), Positives = 123/308 (39%), Gaps = 41/308 (13%)

Query: 47  TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
           T LH+ +  GH  +   +L+         N K+ETPLH A R G     K  +     V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS----------------- 149
            K  +D+++ L+ A   G  ++ K LL  ++   L      T                  
Sbjct: 61  AK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 150 ----------------LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
                           LHV+A  G + + + LLE           NG TPLH++    +L
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNL 178

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
           +I + LL       S P   G TPLH AA + ++ +   +L     SA   ++ G T LH
Sbjct: 179 DIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLH 236

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 313
           L  +    E V  L+   +     N+ +  G T LHL        +   L+K GV V+A 
Sbjct: 237 LAAQEGHAEMVALLL---SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293

Query: 314 NRKGYTAL 321
            R GYT L
Sbjct: 294 TRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 9e-31
 Identities = 79/338 (23%), Positives = 128/338 (37%), Gaps = 43/338 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPE--------------------------------MVA 73
            T LH  AR GH  +   +L+                                      A
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 74  AENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
              +K  TPLH A + G++   +L +  D        ++  + L+VA     LD+ K LL
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
                         T LH++A    +++ + LL+        + + G TPLHL+  +GH 
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHA 244

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
           E+   LL    + + L +  G TPLH  A +G + + D ++   +   +  T  G T LH
Sbjct: 245 EMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLH 302

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 313
           +       + VK+L++        N     G + LH A     T +V  LLK G   N +
Sbjct: 303 VASHYGNIKLVKFLLQHQADV---NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 359

Query: 314 NRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQL 351
           +  G T L +    A   G + +   L+         L
Sbjct: 360 SSDGTTPLAI----AKRLGYISVTDVLKVVTDETSFVL 393

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-29
 Identities = 89/332 (26%), Positives = 140/332 (42%), Gaps = 43/332 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
            T LH+ AR GH E+A  +L+   + V A+ +  +TPLH A R G  N VKL +  + + 
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 92

Query: 106 --------------------------------IYKLNRDNESVLYVACERGRLDVAKQLL 133
                                              + +   + L+VA + G++ VA+ LL
Sbjct: 93  NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 152

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
              +          T LHV+    +LDIVK LL            NG+TPLH++  +  +
Sbjct: 153 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQV 211

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
           E+ R LL+     ++    +G TPLH AA +G   ++  +L     +  +    G T LH
Sbjct: 212 EVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLH 269

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 313
           L  +         L   +    + +     G T LH+A+      +V +LL+   DVNA 
Sbjct: 270 LVAQEGHVPVADVL---IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 314 NRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            + GY+ L      A+  G   IV  L + GA
Sbjct: 327 TKLGYSPLHQ----AAQQGHTDIVTLLLKNGA 354

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-26
 Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 10/198 (5%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
           T LHV++  GHL IVK LL+         ++   TPLH++   GH E+ + LL+    ++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
           +    + +TPLH AA  G  N++  +L  N       T     +     + +    +  L
Sbjct: 61  A-KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 327
            +  +           G T LH+A       +   LL+     NA  + G T L V    
Sbjct: 120 EKEASQ----ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV---- 171

Query: 328 ASNSGALQIVPALEEAGA 345
           A +   L IV  L   G 
Sbjct: 172 AVHHNNLDIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 2e-22
 Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 40/273 (14%)

Query: 49  LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVI 106
           LH+ A++G   +A  +L+       A  +   TPLH A     L+ VKL +  G  P   
Sbjct: 136 LHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-- 192

Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELL 166
                +  + L++A ++ +++VA+ LL Y      E     T LH++A  GH ++V  L 
Sbjct: 193 -SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL- 250

Query: 167 EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL-------------------- 206
            ++Q      + +G TPLHL   +GH+ +   L+K    +                    
Sbjct: 251 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 310

Query: 207 ------------SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL 254
                        +     G +PLH AA +G  +I+  +L     S    +  G T L +
Sbjct: 311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAI 369

Query: 255 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTI 287
             +         L    + T    + D    + 
Sbjct: 370 AKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 8e-11
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 250 TVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
           T LH+         VK L++   +     N+ +    T LH+A     T +  YLL+   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP----NVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQ 350
            VNA  +   T L      A+  G   +V  L E  A     
Sbjct: 58  KVNAKAKDDQTPLHC----AARIGHTNMVKLLLENNANPNLA 95

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 2e-30
 Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 15/281 (5%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
           N +L    +    +L  ++L+    +   E E   TPLH A +  R + V+L +      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL 165
           + +          +A   G + + K  L+  + +        T+   +A+ G +  +K L
Sbjct: 66  VLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 166 LEARQEFAWK---------KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 216
            +       +             G T L  +  KGH+E+ + LL       +  DN GR 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 217 PLHWAAIKGRINIIDEILSLNLQ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
            L  A +    + ++ I  L L       +R   G+T L L V+      V+ L+E  +I
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
               N  D+DG T L LA   KL  +   L K G   +  +
Sbjct: 245 E--INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-28
 Identities = 56/278 (20%), Positives = 108/278 (38%), Gaps = 18/278 (6%)

Query: 80  ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
              L +A +   ++ V+  +    +V ++      + L+ A +  R D+ + LL + +  
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL 199
           +L      T   ++A+AG + ++K  L    +   + D  G T    +   G ++  + L
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 200 LKLDPDLS---------SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 250
            K   +++               G T L  AA KG + ++  +L             G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 251 VLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLL-KLG 307
            L   + ++    V+ +   L +   A  N+    G T L LA   K   +V  LL +  
Sbjct: 185 ALIHALLSSDDSDVEAITHLL-LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
           +++N  +  G TAL +    A      +I   L + GA
Sbjct: 244 IEINDTDSDGKTALLL----AVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 6e-18
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 48/268 (17%)

Query: 14  LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEM-- 71
           L + +   D      L++   A +         T LH   +   E++   +L+   +   
Sbjct: 9   LIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 72  ------------------------------VAAENEKMETPLHEACREGRLNFVKLFVGI 101
                                         V   +    T   EA   G++  +K     
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 102 DPSVIYK---------LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHV 152
             +V  +         L +   + L  A E+G ++V K LL+     +   D +  +  +
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 153 SAMAG-----HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
            A+          I   LL+   +    +   G TPL L+  K HL + + LL+ +    
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILS 235
           +  D++G+T L  A       I + +  
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 6e-14
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 178 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN 237
           +  +  L  +     +++ ++LL+   +++   +  G TPLH A    R +I++ +L   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 238 LQSAEM--------------------------------RTIHGETVLHLTVKNNQYEAVK 265
                                                    +G T         + +A+K
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 266 YLME-------TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKG 317
           +L +            +        G T L  A       ++  LL ++G DVNA +  G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 318 YTALDVVESDASNSGALQIVPALEEAGA 345
             AL      + +S    I   L + GA
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 14  LFETILRGDTQAFLSLIQQDEAKI--KQTVPGSLNTILHLTARFGHEELASEILKLCPEM 71
           L +   +G  +    L+ +  A +     +  +      L++     E  + +L      
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 72  VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
           V    E+ +TPL  A  +  L  V+  +  +   I   + D ++ L +A E     +A+ 
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 132 LLNY 135
           L   
Sbjct: 272 LCKR 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  102 bits (255), Expect = 2e-24
 Identities = 47/340 (13%), Positives = 104/340 (30%), Gaps = 39/340 (11%)

Query: 2   EIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELA 61
           ++  I   +  +LF+  +  +  + ++L  ++   I      ++  +  L   +      
Sbjct: 15  QLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR 74

Query: 62  SEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGI--DPSVIYKLNRDNESVLYV 119
           +            +  K E     A   G  + +     +     ++  +  +N     +
Sbjct: 75  NAKQLWSD--AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 132

Query: 120 ACERGRLDVAKQLLNY--SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFA--WK 175
           A E G L V  +L     + ++ +       +  ++A  GHL ++  L E     A    
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 176 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL---------------------PDNEG 214
           +  N +     +  +GH  +   LL     L+                          E 
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 215 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT 274
                 +   G  +++        +S  ++  +    L         + +++L+    I 
Sbjct: 253 HDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 275 KLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
            LA       D N +L LA           LL +   V A
Sbjct: 306 ALAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 91.9 bits (227), Expect = 7e-21
 Identities = 36/279 (12%), Positives = 74/279 (26%), Gaps = 39/279 (13%)

Query: 75  ENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLN 134
           EN + +  L         N  + F+  +   +  L+      +++   +    V + L  
Sbjct: 8   ENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCL 67

Query: 135 YSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-- 192
           Y +        L +  H                       KK +       ++   G   
Sbjct: 68  YYAHYNRNAKQLWSDAH-----------------------KKGIKSEVICFVAAITGCSS 104

Query: 193 -LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL-QSAEMRTIHGET 250
            L+    LL  D  +  +   E       AA  G +++++ +  L   +   M       
Sbjct: 105 ALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 163

Query: 251 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 310
              L  +N     +  L E       A +   +       A       ++ +LL   V +
Sbjct: 164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 223

Query: 311 NAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD 349
                                G   + P +     R  +
Sbjct: 224 AYAEI-----------HEFEYGEKYVNPFIARHVNRLKE 251

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.9 bits (157), Expect = 7e-12
 Identities = 21/205 (10%), Positives = 52/205 (25%), Gaps = 30/205 (14%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             L +       ++ +  + A +             + L  +K   ++ + L       +
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN 73

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
                +  +  H                        + I  E +  +        A+  L
Sbjct: 74  RN-AKQLWSDAH-----------------------KKGIKSEVICFVAAITGCSSALDTL 109

Query: 268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK--GYTALDVVE 325
              L   ++  +   +      LA       ++  L +L         +   Y A  +  
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA- 168

Query: 326 SDASNSGALQIVPALEEAGARRCDQ 350
              + +G L ++  L E        
Sbjct: 169 ---AENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 34/235 (14%)

Query: 2   EIEAINPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELA 61
            ++ I     +        G       L +    +I   +         L A  GH  + 
Sbjct: 118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 177

Query: 62  SEILKLCPEMVAAENEKME--TPLHEACREGRLNFVKLFVGIDPSVIYKL---------- 109
           + + +L P    A  +          A   G  N +   +     + Y            
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237

Query: 110 -----------NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGH 158
                       ++      ++   G  D+  +        +L       +L        
Sbjct: 238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYML------RNLIRRNDEVL 291

Query: 159 LDIVKELLEARQEFAWKKD----LNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 209
           LD ++ LL      A         + +  L L+   G+      LL + P + +L
Sbjct: 292 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-PSVLAL 345

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 6e-24
 Identities = 46/263 (17%), Positives = 88/263 (33%), Gaps = 15/263 (5%)

Query: 75  ENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLN 134
           +  K+E  L                    +   +    N+   +V+ +    +V     N
Sbjct: 35  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 94

Query: 135 YSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKG 191
               L + VD    T LH      +L++VK L++  + + +      +       S +  
Sbjct: 95  TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN------------IIDEILSLNLQ 239
                  LL        L D+  RT LH   I   +             ++  I+    +
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 240 SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTM 299
             +  T   E+  +      +   ++ L     I  + N  D++G+T L++A      ++
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 300 VIYLLKLGVDVNAINRKGYTALD 322
           V  LL  G D    N+ G   +D
Sbjct: 275 VDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 18  ILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEIL--KLCPEMVAAE 75
             +      +  I + + +  Q+      +  +       + +   +    +   M+ A+
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 255

Query: 76  NEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVA 120
           +   +T L+ A R G ++ V   +  G DP +    N+     +   
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIA---NKSGLRPVDFG 299

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 1e-23
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 83  LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE 142
           +      G+L  +K  +  D S+  + ++D+ + L+ AC  G  ++ + LL     +  +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 143 VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL 202
            D   + LH++A AG  +IVK LL  +       + NG TPLH + SK   EI   LL+ 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 203 DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE 262
             +  +  D+   T +H AA KG + +I  IL     S  ++   G T LHL     + E
Sbjct: 126 GANPDA-KDHYEATAMHRAAAKGNLKMIH-ILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 263 AVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK 305
             K L+    +I     + + +  T L +A  G L  ++  +++
Sbjct: 184 EAKLLVSQGASI----YIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 5e-21
 Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 38/209 (18%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE------------- 194
             +   A +G L+ +KE + A +  A + D +  T LH +CS GH E             
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 195 --------------------ITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
                               I + LL     +++  +  G TPLH+AA K R  I   +L
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 235 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG 294
                + + +  +  T +H        + +  L+     T   N+ D +GNT LHLA   
Sbjct: 124 EGGA-NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST---NIQDTEGNTPLHLACDE 179

Query: 295 KLTTMVIYLLKLGVDVNAINRKGYTALDV 323
           +       L+  G  +   N++  T L V
Sbjct: 180 ERVEEAKLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 7e-17
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 4/141 (2%)

Query: 181 HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS 240
           +  +      G LE  +E +  D  L++  D + RT LHWA   G   I++ +L L +  
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 241 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 300
            +        +               L +   +    N  + +G T LH A +     + 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV----NAVNQNGCTPLHYAASKNRHEIA 119

Query: 301 IYLLKLGVDVNAINRKGYTAL 321
           + LL+ G + +A +    TA+
Sbjct: 120 VMLLEGGANPDAKDHYEATAM 140

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 2e-19
 Identities = 49/272 (18%), Positives = 83/272 (30%), Gaps = 30/272 (11%)

Query: 76  NEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
            E  +T LH A       F+   +        +   N   ++ L++A   G     ++L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL 193
              + +++   G  T+LH++           LL+ R     +   + +      C+    
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH-PRDASDTYLTQSQDCTP--- 121

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
                             +    P    +     N  +          E     G T LH
Sbjct: 122 ------------------DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 313
           + V +   E V+ L +              G T LHLA   +  +++  LLK G D  A 
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221

Query: 314 NRKGYTALDVVESDASNSGALQIVPALEEAGA 345
              G T L      A       +   L   GA
Sbjct: 222 MYGGRTPLGS----ALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.7 bits (195), Expect = 2e-17
 Identities = 48/265 (18%), Positives = 77/265 (29%), Gaps = 29/265 (10%)

Query: 46  NTILHLTARFGHEELASEILKLC--PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDP 103
           +T LHL     HE     +L      E +  +N+  +T LH A   G  + V+       
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
            V+      + ++   AC       A  LL                      +   D   
Sbjct: 70  GVLVAERGGHTALHL-ACRVRAHTCACVLLQPRP------------------SHPRDASD 110

Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAI 223
             L   Q+     D +       S      E           L +  + +G TPLH A I
Sbjct: 111 TYLTQSQD--CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHTPLHVAVI 167

Query: 224 KGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDN 282
                ++  +        +     G T LHL V+      ++ L++   +          
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP----TARMY 223

Query: 283 DGNTILHLATAGKLTTMVIYLLKLG 307
            G T L  A       +   L   G
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (190), Expect = 1e-16
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDE 232
               +G T LHL+    H      LL      +   L ++ G+T LH AAI G  + +++
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-----------TLNITKLANMPD 281
           + +       +    G T LHL  +   +     L++           T         PD
Sbjct: 64  LYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 282 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
                    +                + + A N  G+T
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
           G+T LHL V +     + +L+      +  ++ ++ G T LHLA      + V  L   G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC 348
             V    R G+TAL +    A    A      L +      
Sbjct: 69  AGVLVAERGGHTALHL----ACRVRAHTCACVLLQPRPSHP 105

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK---GYTAL 321
           +      DG+T LHLA   +    + +LL        ++ +   G TAL
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (196), Expect = 1e-17
 Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 6/227 (2%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
           N  LH            E+L   P ++  +++    PLH +            +    +V
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE- 164
                 D+             ++      Y   L  +++ +T                E 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 165 --LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA 222
              L         KD     PLH + S G L++   L  L     +  D +G TPL  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 223 IKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
            +G  +    ++       ++    G     + +     +  K+ + 
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 3e-15
 Identities = 45/235 (19%), Positives = 70/235 (29%), Gaps = 46/235 (19%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             LH + M      V+ELL ++     +KD +G  PLH S S    EIT  LL    +++
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDE----------------------------------- 232
                +      +       N+                                      
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 233 -ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA 291
             L  N  S  ++    +  LH        + ++ L          N  D  G T L  A
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHA 179

Query: 292 TAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
            A       + L+ K G + + ++ KG  A DV    A N    Q+         
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV----ALNE---QVKKFFLNNVV 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 81.3 bits (199), Expect = 1e-17
 Identities = 50/249 (20%), Positives = 84/249 (33%), Gaps = 17/249 (6%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
                AC  G    V   +  G D +     N D  + L+ AC    +D+  + L  +  
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDM-VKFLVENGA 97

Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE 198
            I + D        +A +     + E L ++       +  G TPL ++  +   E+ + 
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN 258
            +            E    +   A +   +                   G T LH+    
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND--------VRHAKSGGTALHVAAAK 209

Query: 259 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY 318
              E +K L+         N+ D DG T LH A           L++   D+ A+N+ G 
Sbjct: 210 GYTEVLKLLI---QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266

Query: 319 TALDVVESD 327
           TA DV + D
Sbjct: 267 TAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 32/249 (12%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
             +       G  E    +L+   + +   N    T LH+AC +  ++ VK  V    ++
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 106 IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVS------------ 153
               N     +   A           +   + +  +  +G T                  
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 154 -------------AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL 200
                             L   ++ L +      +   +G T LH++ +KG+ E+ + L+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 201 KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ 260
           +   D+ ++ D +G TPLH AA  G+      IL  NL   E     G+T   +  ++  
Sbjct: 220 QARYDV-NIKDYDGWTPLHAAAHWGKEEAC-RILVENLCDMEAVNKVGQTAFDVADEDI- 276

Query: 261 YEAVKYLME 269
              + YL E
Sbjct: 277 ---LGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH+ A  G+ E+  ++L      V  ++    TPLH A   G+    ++ V    D 
Sbjct: 200 GTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

Query: 104 SVIYKLNRDNESVLYVACE--RGRLDVAKQLLN 134
             +   N+  ++   VA E   G L+  ++  N
Sbjct: 259 EAV---NKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 281 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
             D   +   A +   T  V+ LL+ G D+N  N  G TAL
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTAL 77

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.2 bits (191), Expect = 1e-16
 Identities = 50/285 (17%), Positives = 95/285 (33%), Gaps = 30/285 (10%)

Query: 80  ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
           E+P+           +   +    SV     R N +VL+        + ++ L+ + +  
Sbjct: 1   ESPIKLHTEAAGSYAITEPI-TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 140 ILE---------VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSK 190
            +           D  T  L ++ +A    +V  L++A  +       +  + LH + + 
Sbjct: 60  CIAAGADVNAMDCDENT-PLMLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAAN 117

Query: 191 GHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKG----------RINIIDEILSLNL 238
               +   +L            D  G T L   A              +    ++     
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT 298
              +     G T LH   + +    VKYL+      K  +  D DG T + LA       
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGRIE 235

Query: 299 MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
           +V+YL++ G  V A++   +TA  +    A  +    IV   +  
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQL----AQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 8e-15
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 24/267 (8%)

Query: 21  GDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEM-------VA 73
             + A    I ++   I         T+LH  A     E + +++    +        V 
Sbjct: 11  AGSYAITEPITRESVNIIDPRHN--RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN 68

Query: 74  AENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
           A +    TPL  A    R   V  ++    +     N+   S L+ A       +   +L
Sbjct: 69  AMDCDENTPLMLAVLARRRRLVA-YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 134 NYSSLLILEVDGLTTSLHVSAMA----GHLDIVKELLEARQEFAW---------KKDLNG 180
           N + L     +     +    +     G   +    L   +              +   G
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 187

Query: 181 HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS 240
            T LH +    ++ I + L+          D +G+TP+  AA +GRI ++  ++     S
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-S 246

Query: 241 AEMRTIHGETVLHLTVKNNQYEAVKYL 267
            E       T   L   NN +  V   
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 68  CPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLD 127
                 +E  K  T LH A +   +  VK  VG   S   K + D ++ + +A + GR++
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 128 VAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR 169
           V   L+   +S+  ++     T+  ++    H +IV      R
Sbjct: 236 VVMYLIQQGASVEAVDATDH-TARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LH  A+  +  +   ++         ++E  +TP+  A +EGR+  V   +  G   
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
             +   +  + +   +A      ++       
Sbjct: 248 EAV---DATDHTARQLAQANNHHNIVDIFDRC 276

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (185), Expect = 3e-16
 Identities = 38/206 (18%), Positives = 79/206 (38%), Gaps = 9/206 (4%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVA---AENEKMETPLHEACREGRLNFVKLFVGID 102
           ++ LHL      + L  E+++     +A    +N   +TPLH A    +    +  +G  
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA-----G 157
                +  R N  +     +     V     + ++  +  +   T     + +      G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 217
           +L IV+ L+    +   ++  NG T LHL+    + ++   LLK   D  +    +G +P
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSP 181

Query: 218 LHWAAIKGRINIIDEILSLNLQSAEM 243
                 +    I  ++  L L++ +M
Sbjct: 182 YQLTWGRPSTRIQQQLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 6e-14
 Identities = 38/213 (17%), Positives = 65/213 (30%), Gaps = 43/213 (20%)

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLP---DNEGRTPLHWAAIKGRINIIDEILS 235
           +G + LHL+       +T E+++      +     +N  +TPLH A I  +  I + +L 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 236 LNLQSAEMRTIHGETVL----------------HLTVKNNQYEAVKYLMETLNITKLANM 279
                          +                   T  +                 LA++
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 280 PDN--------------------DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
                                  +G T LHLA   +   +V  LLK G DVN +  +GY+
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 320 ALDVVESDASNSGALQIVPALEEAGARRCDQLP 352
              +         + +I   L +        LP
Sbjct: 181 PYQL----TWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 10/215 (4%)

Query: 80  ETPLHEACREGRLNFVKLFV---GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS 136
           ++ LH A            +     D + +   N   ++ L++A    + ++A+ LL   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 137 SLLILEVDGLTTSLHVSAMAGHLDIVKELLEA-----RQEFAWKKDLNGHTPLHLSCSKG 191
               L      T LH++   G L  V  L ++             + NGHT LHL+   G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 192 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV 251
           +L I   L+ L  D+++     GRT LH A      +++  +L          T  G + 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSP 181

Query: 252 LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT 286
             LT         + L + L +  L  +P+++   
Sbjct: 182 YQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEE 215

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
            T LHL     + +L S +LK   ++      +  +P             +      ++ 
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

Query: 104 SVIYKLNRDNES 115
             +   + D ES
Sbjct: 205 LQMLPESEDEES 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 40/224 (17%)

Query: 46  NTILHLTARFGHEELASEILKLCPEMVA---AENEKMETPLHEACREGRLNFVKLFVG-- 100
           +T LH+    G+      ++ L  +        N   +TPLH A      + V+L V   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 101 ----------------------------------IDPSVIYKLNRDNESVLYVACERGRL 126
                                                  +   N D  + L+VA      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 127 DVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHL 186
           +  + LL   + +         S  + A+  +   + +LL         +  +G + LH 
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 187 SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII 230
           +  +G L + R L++   D  SL +    TPL  A  +  I+I+
Sbjct: 184 ASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 7e-14
 Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 77  EKMETPLHEACREGRLNFVKLFVGIDPSV---IYKLNRDNESVLYVACERGRLDVAKQLL 133
           E  +TPLH A  +G L  V   V +       +   N   ++ L++A       V + L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 134 NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA---RQEFAWKKDLNGHTPLHLSCSK 190
              +  +       T+ H++        ++ LL++          ++ +G T LH++ + 
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 191 GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 250
              E  + LL+   D+ ++    GR+PL  A  +     + ++L  +  +   +   G +
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVNAQMYSGSS 179

Query: 251 VLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMV 300
            LH          V+ L+ +  +     ++ +   +T L +A + ++  ++
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADS----SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 47/233 (20%), Positives = 75/233 (32%), Gaps = 47/233 (20%)

Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAW---KKDLNGHTPLHLSCSK---------- 190
           DG  T LH++ + G+L  V  L+   Q+        +    TPLHL+             
Sbjct: 2   DG-DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 191 -----------------------GHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAIK 224
                                        R LL             + +G T LH A   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG 284
                +  +L        +    G + L   V+NN    V+ L++        N     G
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV---NAQMYSG 177

Query: 285 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
           ++ LH A+   L  +V  L++ G D +  N    T L V    A +   + I+
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV----ARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 68  CPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLD 127
               + A N    T LH A        V+L +     +     +   S L  A E   L 
Sbjct: 99  GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 158

Query: 128 VAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLS 187
           + + LL + + +  ++   +++LH ++  G L +V+ L+ +  + +  K+ +  TPL ++
Sbjct: 159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 217

Query: 188 CSKGHLEITR 197
            S+  ++I R
Sbjct: 218 RSRRVIDILR 227

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.7 bits (166), Expect = 6e-14
 Identities = 39/213 (18%), Positives = 54/213 (25%), Gaps = 39/213 (18%)

Query: 161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 220
           ++ +LL    E     D  G T LHL+      +  + LL    D +S  +         
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 221 AAIKGRINII--------------------------------DEILSLNLQSAEMRTIHG 248
            A                                         E L             G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
           +T LH     N  EAV  L+         +  D+   T L LA           LL    
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANR---DAQDDKDETPLFLAAREGSYEASKALLDNFA 180

Query: 309 DVNAINRKGYTALDVVESDASNSGALQIVPALE 341
           +    +       DV    AS      IV  L+
Sbjct: 181 NREITDHMDRLPRDV----ASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.0 bits (146), Expect = 3e-11
 Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 4/203 (1%)

Query: 29  LIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACR 88
           L+ Q  A++  T+  +  T LHL ARF   + A + L        +++    TPLH A  
Sbjct: 8   LLAQG-AELNATMDKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTPLHAAVA 65

Query: 89  EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTT 148
              +   ++ +    + +     D  + L +A       + + L+   + +    +   T
Sbjct: 66  ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKT 125

Query: 149 SLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 208
           +LH +A   + + V  LL         +D    TPL L+  +G  E ++ LL    +   
Sbjct: 126 ALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFLAAREGSYEASKALLDNFANR-E 183

Query: 209 LPDNEGRTPLHWAAIKGRINIID 231
           + D+  R P   A+ +   +I+ 
Sbjct: 184 ITDHMDRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.1 bits (136), Expect = 6e-10
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 3/209 (1%)

Query: 59  ELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLY 118
           ++ S++L    E+ A  ++  ET LH A R  R +  K  +        + N     +  
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 119 VACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDL 178
                        L N ++ L   +   TT L ++A      +V++L+ A  +     D 
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADN 121

Query: 179 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 238
           +G T LH + +  + E    LL    +     D++  TPL  AA +G      + L  N 
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEAS-KALLDNF 179

Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
            + E+          +  +   ++ V+ L
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 194 EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
           ++  +LL    +L++  D  G T LH AA   R +       L    A+  +        
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKR---LLDAGADANSQDNTGRTP 59

Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 313
           L           + +   N     N   +DG T L LA    +  MV  L+    D+NA 
Sbjct: 60  LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 119

Query: 314 NRKGYTAL 321
           +  G TAL
Sbjct: 120 DNSGKTAL 127

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (118), Expect = 6e-08
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 177 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
           DL     L  +   G  +  R L+      ++  D  G +PLH AA  G  +  + +L  
Sbjct: 1   DLG--KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 296
            +       +    +     + +       L    ++    N  D    T LH AT    
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV----NAKDMLKMTALHWATEHNH 112

Query: 297 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 341
             +V  L+K G DV+  ++   TA D+    + ++G   +   L+
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDI----SIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (110), Expect = 7e-07
 Identities = 26/154 (16%), Positives = 44/154 (28%), Gaps = 5/154 (3%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
             L EA R G+ + V++ +             +   L                  S    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL 200
            +VD     +  S    ++  V     A             T LH +    H E+   L+
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM---LKMTALHWATEHNHQEVVELLI 120

Query: 201 KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 234
           K   D+        +T    +   G  ++  EIL
Sbjct: 121 KYGADVH-TQSKFCKTAFDISIDNGNEDLA-EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 5/157 (3%)

Query: 45  LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPS 104
           L   L   AR G ++    ++                 L               +     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGH---FSTTEVLLRAGV 58

Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
                 + + + L++A   G  ++ + LL + + +  +     T+LH +    H ++V+ 
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE- 117

Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 201
           LL         +     T   +S   G+ ++  E+L+
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 7e-08
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 10/161 (6%)

Query: 182 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 241
             L  + ++G ++  R LL  +       +  G+T L           ++ +     +  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL-----KQG 58

Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
               +   +         +   +  L   +      N+PD  G   +HLA     T +V 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 302 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 342
           +L     D++  + +G T L++    A   GA  +V  L+ 
Sbjct: 119 FLAAES-DLHRRDARGLTPLEL----ALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 24/157 (15%), Positives = 41/157 (26%), Gaps = 7/157 (4%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             L  +A  G +  V+ LL          +  G T L +            L +      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
                                 +      ++    +    G   +HL V+      V +L
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL 304
               ++    +  D  G T L LA       +V  L 
Sbjct: 121 AAESDL----HRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 4/158 (2%)

Query: 78  KMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
           +    L  A   G +  V+  +  +      LNR  ++ L V          +       
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL--LKQG 58

Query: 138 LLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
                 D   TS    A         ++L          D  G  P+HL+  +GH  +  
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 198 ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
            L   + DL    D  G TPL  A  +G  +++D +  
Sbjct: 119 FLAA-ESDLH-RRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 4/153 (2%)

Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
           L  A  RG +   ++LL+   +    ++    +     M G   I  ELL+       + 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD 65

Query: 177 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 236
                     + +     +            ++PD  G  P+H A  +G   ++  + + 
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVL--VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
           +      R   G T L L ++    + V  L  
Sbjct: 124 S--DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 18/154 (11%), Positives = 40/154 (25%), Gaps = 8/154 (5%)

Query: 49  LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYK 108
           L   A  G  +    +L        A N   +T L           ++L        +  
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD 65

Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
            +  +                            +V+    +  +       +    ++  
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGA------DVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 169 RQEFAW--KKDLNGHTPLHLSCSKGHLEITRELL 200
               +   ++D  G TPL L+  +G  ++   L 
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-07
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 7/157 (4%)

Query: 81  TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
             L  A   G L  +   +   ++ +      ++      +   +       + L     
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNA-----QNGFGRTALQVMKLGNPEIARRLLLRGA 57

Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE 198
                D    ++   A         + L   Q     +D  G+ PLHL+  +GHL +   
Sbjct: 58  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 117

Query: 199 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 235
           L+K         +++G T    A + GR  ++  + +
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 6/160 (3%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             L  +A  G L+ +  LL+        ++  G T L +          R    L     
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRL--LLRGANP 59

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
            L D  G   +H AA  G ++ +  +L                +     + +       +
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
             T +        ++ G+T   LA       +V  +   G
Sbjct: 120 KHTASNV---GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 10/130 (7%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWK-----KDLNGHTPLHLSC---SKGHLEITREL 199
            SL  +     +  + +      +   K           T LHL+     +  L I   L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN 259
           ++   +L            +            ++L     S E+    GET L +  +  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYC--CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 260 QYEAVKYLME 269
                + L +
Sbjct: 126 HEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 19/137 (13%), Positives = 32/137 (23%), Gaps = 9/137 (6%)

Query: 179 NGHTPLHLSCS---KGHLEITRELLKLDPDL-----SSLPDNEGRTPLHWAAIKGRINII 230
           +    LH  C       +    +      DL      +       T LH A        +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 231 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 290
             +  L   S  +                  +  + L   L       + +  G T L +
Sbjct: 62  HIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 291 ATAGKLTTMVIYLLKLG 307
           A   K       L +  
Sbjct: 121 AKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 12/143 (8%)

Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEM--------RTIHGETVLHLTVKNNQYEAV 264
           +    LH      +   I  +L       ++             ET LHL V++    ++
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 265 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 324
             +   +  +   +     G+T LH          +  LL+    +   N  G T LD+ 
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI- 120

Query: 325 ESDASNSGALQIVPALEEAGARR 347
              A           L +A + R
Sbjct: 121 ---AKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 14/136 (10%)

Query: 112 DNESVLYVACE---RGRLDVAKQLL------NYSSLLILEVDGLTTSLHVSAMA---GHL 159
           D  + L+  CE      +    Q             L    +   T+LH++  +     L
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 219
            IV  L++       +         +   +     +             + +  G TPL 
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL--LRGKASIEIANESGETPLD 119

Query: 220 WAAIKGRINIIDEILS 235
            A      +  + +  
Sbjct: 120 IAKRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 74  AENEKMETPLHEACREGRLNFVKLFV--GID---PSVIYKLNRDNESVLYVAC---ERGR 125
           A+       L EA +   +  +      G+D      +   +  +E+ L++A    +R  
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 126 LDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLH 185
           L +    L  +S  + +  G  ++              +LL   +      + +G TPL 
Sbjct: 61  LHIVD-FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 119

Query: 186 LSCSKGHLEITRELLKLDPDLSSLPDN 212
           ++    H      L +      +   +
Sbjct: 120 IAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 68  CPEMVAAENEKMETPLHEACR---EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG 124
               +A  +E  ET LH A R      L+ V   V    ++  +  + + ++ Y      
Sbjct: 34  EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
              +   L   +S+ I    G  T L ++    H    + L +A
Sbjct: 94  AECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHCEELLTQA 136

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/124 (12%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 115 SVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAW 174
           ++L  +   G  D+ ++++          +    +   +A+      + + L        
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 175 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP--LHWAAIKGRINIIDE 232
             D +G TPLH + S  ++++ + L++    + ++  ++ +T         +G       
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 233 ILSL 236
           +  +
Sbjct: 122 LYGV 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 216 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 275
             L  ++++G  +++  I+       +  ++  +  +            + +   +    
Sbjct: 3   ALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 58

Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK-GYTALDVVESDASNSGAL 334
             N  D+DG T LH A +     +  +L++ G  V A+      TA D  E      G  
Sbjct: 59  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYT 116

Query: 335 QIVPALEEAGAR 346
           Q    L     +
Sbjct: 117 QCSQFLYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 81  TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
             L ++  EG  + V+  +          +    ++    C      V   +    ++  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHL--SCSKGHLEITRE 198
            + DG T     ++      + K L+E+          +  T         +G+ + ++ 
Sbjct: 63  ADSDGWTPLHCAASCNNV-QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 199 LLKLDPDL 206
           L  +   +
Sbjct: 122 LYGVQEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
             L  +A  G ++ V+ LLEA    A     N +    +           ELL L     
Sbjct: 5   DWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEP 61

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
           +  D    T     A +        +L       ++R   G   + L  +    +  +YL
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 2/124 (1%)

Query: 77  EKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS 136
           E     L  A   GR+  V+    ++                     G   VA+ LL + 
Sbjct: 1   EPSADWLATAAARGRVEEVRAL--LEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHG 58

Query: 137 SLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEIT 196
           +          T     A          +L         +D  G  P+ L+   GH ++ 
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 197 RELL 200
           R L 
Sbjct: 119 RYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 2/123 (1%)

Query: 113 NESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEF 172
           +   L  A  RGR++  + LL   +              +  M      V ELL      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGA--NPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 173 AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE 232
               D    T      ++     T  +L        + D  GR P+  A   G  ++   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 233 ILS 235
           + +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 5/123 (4%)

Query: 182 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 241
             L  + ++G +E  R LL+          N   +          +        L L  A
Sbjct: 5   DWLATAAARGRVEEVRALLEAGA-----NPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 59

Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
           E       T+        +   +  L+         ++ D  G   + LA       +  
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 302 YLL 304
           YL 
Sbjct: 120 YLR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 80  ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
           +     A + G L+ VK +  +          +                  + L      
Sbjct: 3   DKEFMWALKNGDLDEVKDY--VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60

Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL 199
           I   D    +  +SA+        +LL ++      K  +G T L  + ++      + L
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAI----KAL 116

Query: 200 LK 201
           L+
Sbjct: 117 LQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 9/124 (7%)

Query: 182 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 241
                +   G L+  ++ +    D       EG       A       I E L L     
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
                H  T L   V       VK L+          +   DG T L           + 
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK---TVKGPDGLTALEATD----NQAIK 114

Query: 302 YLLK 305
            LL+
Sbjct: 115 ALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 207
                +   G LD VK+ +   ++     +       + +       +      L     
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---LLLKGAD 60

Query: 208 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
               ++       +A+        ++L        ++   G T L  T      +A+K L
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKAL 116

Query: 268 ME 269
           ++
Sbjct: 117 LQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	600
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.81
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.8
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.74

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-42  Score=357.67  Aligned_cols=320  Identities=28%  Similarity=0.359  Sum_probs=270.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCC
Q 007515           12 RHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGR   91 (600)
Q Consensus        12 ~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~   91 (600)
                      ++|+.|+..||.+.++.+++.+.+.  ...+..|+||||+||..|+.++|++|++.|.+ ++.+|..|.||||+|+..|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i--n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTC
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCC
Confidence            5799999999999999999987553  34578899999999999999999999999987 89999999999999999999


Q ss_pred             HHHHHHHHhCCccc--------------------------------ccccCCCCCcHHHHHHHhCCHHHHHHHHhCCccc
Q 007515           92 LNFVKLFVGIDPSV--------------------------------IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL  139 (600)
Q Consensus        92 ~~iv~~Ll~~~~~~--------------------------------~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~  139 (600)
                      .+++++|+...++.                                ....+..+.++++.|+..++.+++++|++++.++
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999998544321                                1234667888999999999999999999998888


Q ss_pred             ccccCCCChHHHHHHhcCCHHHHHHHHhcCcccc--------------------------------ccCCCCCChHHHHH
Q 007515          140 ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFA--------------------------------WKKDLNGHTPLHLS  187 (600)
Q Consensus       140 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--------------------------------~~~d~~g~tpLh~A  187 (600)
                      +..+..+.+|||.|+..|+.++++.|++.+.++.                                ...+..|.||||+|
T Consensus       159 ~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence            8777778889999999999999999988776543                                12344566677777


Q ss_pred             HhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHH
Q 007515          188 CSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL  267 (600)
Q Consensus       188 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~L  267 (600)
                      +..++.++++.+++.+..... .+..|.||++.|+..++.+++++|++.+ ...+..+..+.||||.++..++.++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~t~L~~~~~~~~~~~~~~l  316 (408)
T d1n11a_         239 AQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFL  316 (408)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HHhCcHhHhhhhhcccccccc-ccCCCCChhhhhhhcCcHHHHHHHHHCC-CccccccccccccchhhcccCcceeeeee
Confidence            777777888888887776654 6778899999999999999999999876 45667777889999999999999999999


Q ss_pred             HHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHh
Q 007515          268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA  343 (600)
Q Consensus       268 l~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~  343 (600)
                      ++.   +.++|.+|.+|+||||+|++.|+.++|++|+++|||+|.+|++|+|||++|..    .++.+++++|...
T Consensus       317 l~~---g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~----~~~~~iv~~L~~~  385 (408)
T d1n11a_         317 LQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR----LGYISVTDVLKVV  385 (408)
T ss_dssp             HHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH----TTCHHHHHHHHHH
T ss_pred             ccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHH
Confidence            886   66799999999999999999999999999999999999999999999999654    4677888877544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-38  Score=325.69  Aligned_cols=291  Identities=28%  Similarity=0.369  Sum_probs=252.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCH
Q 007515           47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRL  126 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  126 (600)
                      ||||+||..|+.++|++|++.|.+ ++..|..|+||||+||..|+.++|++|+++|+++ ...+.+|.|||++|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCH
Confidence            899999999999999999999987 8899999999999999999999999999999887 45689999999999999999


Q ss_pred             HHHHHHHhCCcccc---------------------------------cccCCCChHHHHHHhcCCHHHHHHHHhcCcccc
Q 007515          127 DVAKQLLNYSSLLI---------------------------------LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFA  173 (600)
Q Consensus       127 e~v~~Ll~~~~~~~---------------------------------~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  173 (600)
                      +++++|+....+..                                 ..+..+.++++.|+..++.++++.|++.+.++.
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999986544321                                 112345578999999999999999999988876


Q ss_pred             ccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCC--------------------------------CCCCCCCCHHHHH
Q 007515          174 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS--------------------------------LPDNEGRTPLHWA  221 (600)
Q Consensus       174 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~--------------------------------~~d~~g~tpL~~A  221 (600)
                       ..+.+|.+|||+|+..|+.+++++|+++|+++..                                ..+..|.|||+.|
T Consensus       160 -~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         160 -AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             -CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             -cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence             7788999999999999999999999999887643                                1233455677777


Q ss_pred             HHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHH
Q 007515          222 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI  301 (600)
Q Consensus       222 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~  301 (600)
                      +..++.++++.++... ...+..+..|.|||+.|++.++.+++++|++.   +..++..+..+.||||.|+..++.++++
T Consensus       239 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~---g~~~~~~~~~~~t~L~~~~~~~~~~~~~  314 (408)
T d1n11a_         239 AQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVK  314 (408)
T ss_dssp             HHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHhCcHhHhhhhhccc-cccccccCCCCChhhhhhhcCcHHHHHHHHHC---CCccccccccccccchhhcccCcceeee
Confidence            7777777777777654 35556778899999999999999999999987   5678889999999999999999999999


Q ss_pred             HHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccccc
Q 007515          302 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  348 (600)
Q Consensus       302 ~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~  348 (600)
                      ++++.|+++|.+|.+|.||||+|+.    .++.+++++|+++||+..
T Consensus       315 ~ll~~g~~in~~d~~G~T~Lh~A~~----~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         315 FLLQHQADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred             eeccccccccccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999754    478899999999999755

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=278.14  Aligned_cols=266  Identities=24%  Similarity=0.245  Sum_probs=222.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      ++|+||.|++.|+.++|++|++.|+++-...+..|.||||+|+..|+.+++++|++.++.... .+..+.+|.+.|+..+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~-~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccc-cccccchhhHHHhhcC
Confidence            578999999999999999999999883334456799999999999999999999998877644 3678889999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCcccc---------ccCCCCCChHHHHHHhcCcHHH
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFA---------WKKDLNGHTPLHLSCSKGHLEI  195 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~i  195 (600)
                      ..+....+++...+....+..+.++++.|+..++...+..++....+..         ...+..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence            9999999998877666666677789999999999999988887654432         2345678999999999999999


Q ss_pred             HHHHHhc-CCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHh
Q 007515          196 TRELLKL-DPDLSSLPDNEGRTPLHWAAIK----GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET  270 (600)
Q Consensus       196 v~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~----g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~  270 (600)
                      +++|++. ++++.. .+..|.++++.+...    +..++++.|++.+ ..++.++..|.||||.|++.|+.+++++|++.
T Consensus       164 ~~~Ll~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         164 LKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHhccCCCccc-ccCCCCcccccccccccchHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            9999975 566644 788888888776543    3456889999876 45778888999999999999999999999975


Q ss_pred             cccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccC
Q 007515          271 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  315 (600)
Q Consensus       271 ~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~  315 (600)
                      .  +.++|.+|.+|+||||+|++.|+.+++++|+++|||+|++|.
T Consensus       242 ~--g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         242 E--HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             S--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             C--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            3  457899999999999999999999999999999999999873

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-34  Score=279.59  Aligned_cols=244  Identities=20%  Similarity=0.189  Sum_probs=172.0

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhCc--hhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 007515           40 TVPGSLNTILHLTARFGHEELASEILKLCP--EMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVL  117 (600)
Q Consensus        40 ~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~--~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  117 (600)
                      -++.+|+||||+||++|+.+++++|++.++  ..++.+|..|+||||+||..|+.+++++|++.|+++. ..|..|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccchhh
Confidence            357889999999999999999999999864  4577899999999999999999999999999998874 4589999999


Q ss_pred             HHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcH-HHH
Q 007515          118 YVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL-EIT  196 (600)
Q Consensus       118 ~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~-~iv  196 (600)
                      |+|+..++.+++++|++...........   .+........                  ......++......... ...
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~---~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  141 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASD---TYLTQSQDCT------------------PDTSHAPAAVDSQPNPENEEE  141 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred             hhhhccCchHHHHHHHhhccchhcccch---hhhhHHhhhc------------------ccchHHHHHHHhhcchhHHHH
Confidence            9999999999999999876543221111   0000000000                  00001111111111111 111


Q ss_pred             HHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccc
Q 007515          197 RELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL  276 (600)
Q Consensus       197 ~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~  276 (600)
                      ......+.+.. .+|.+|.||||+|+..|+.++++.|++.+.......+..|.||||+|++.++.+++++|++.   +.+
T Consensus       142 ~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~---gad  217 (255)
T d1oy3d_         142 PRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GAD  217 (255)
T ss_dssp             --CCCGGGGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCC
T ss_pred             HHhhhcCcccc-cccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC---CCC
Confidence            11122233332 36777888888888888888888888877665555667788888888888888888888876   567


Q ss_pred             cCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCC
Q 007515          277 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  309 (600)
Q Consensus       277 ~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad  309 (600)
                      +|.+|.+|+||||+|+..++.+++++|+++||+
T Consensus       218 in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            888899999999999999999999999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-33  Score=266.19  Aligned_cols=219  Identities=27%  Similarity=0.340  Sum_probs=121.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      +++.|+.+|..|+.+.|+.+++..+..++.+|..|+||||+||..|+.++++++++.+...... +..+.++++.++..|
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccc-ccccccccccccccc
Confidence            3566666666666666666666666666666666666666666666666666666554443222 333444444444444


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCC
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP  204 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  204 (600)
                      +.+++++|+++                                 +.++. ..|.+|+||||+|+..|+.+++++|+++|.
T Consensus        82 ~~~i~~~Ll~~---------------------------------~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~  127 (223)
T d1uoha_          82 RDEIVKALLGK---------------------------------GAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA  127 (223)
T ss_dssp             CHHHHHHHHHT---------------------------------TCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccchhHHHhcc---------------------------------CceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCC
Confidence            44444444433                                 33332 445556666666666666666666666665


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCC
Q 007515          205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG  284 (600)
Q Consensus       205 ~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G  284 (600)
                      ++.. .+..|.||||+|+..|+.++++.|++.+                                     .++|.+|.+|
T Consensus       128 d~~~-~~~~~~t~L~~a~~~~~~~~~~~L~~~~-------------------------------------~~i~~~d~~g  169 (223)
T d1uoha_         128 NPDA-KDHYEATAMHRAAAKGNLKMIHILLYYK-------------------------------------ASTNIQDTEG  169 (223)
T ss_dssp             CTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-------------------------------------CCSCCCCTTC
T ss_pred             CCCC-cCCCCCccchhhhhcCCcchhhhhcccc-------------------------------------ceeeeccCCC
Confidence            5533 4555555555555555555555554433                                     2344455555


Q ss_pred             ChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHH
Q 007515          285 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE  341 (600)
Q Consensus       285 ~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~  341 (600)
                      +||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|     ..++.++++.|+
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-----~~~~~~i~~~Ll  221 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-----KGGLGLILKRMV  221 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-----CTTHHHHHHHHH
T ss_pred             CceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-----HCCCHHHHhccc
Confidence            5555555555555555555555555555555555555552     124444555544

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-33  Score=264.93  Aligned_cols=218  Identities=24%  Similarity=0.324  Sum_probs=186.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCC
Q 007515           12 RHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGR   91 (600)
Q Consensus        12 ~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~   91 (600)
                      ..++.++.+||.+.++++++.++..+ ...|..|+||||+||..|+.++++++++.+.. ....+..+.++++.|+..|+
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHHhhhhcccccccccccc-cccccccccccccccccccc
Confidence            45788999999999999999887754 56788999999999999999999999999876 66777789999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCcc
Q 007515           92 LNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQE  171 (600)
Q Consensus        92 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~  171 (600)
                      .+++++|++.++++ ...|..|.||||+|+..|+.+++++|+++|.+++..+..+.||||.|+..++.++++.|++.+.+
T Consensus        83 ~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          83 DEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            99999999999876 45689999999999999999999999999988877777777888888888888888888887777


Q ss_pred             ccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 007515          172 FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS  235 (600)
Q Consensus       172 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~  235 (600)
                      +. ..|.+|+||||.|+..|+.+++++|++.|+++.. +|.+|+||||+| ..|+.+++++|++
T Consensus       162 i~-~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~-~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         162 TN-IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI-ENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             SC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ee-eccCCCCceeccccccCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            65 6777888888888888888888888888887754 778888888876 4677788877775

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-33  Score=266.52  Aligned_cols=190  Identities=22%  Similarity=0.240  Sum_probs=117.6

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcHHHHHHHh
Q 007515           46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI--YKLNRDNESVLYVACER  123 (600)
Q Consensus        46 ~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~  123 (600)
                      +||||+||..|+.+.|+.|++..+..++.+|.+|+||||+|+..|+.+++++|++.++++.  ...+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5788888888888888888887777778888888888888888888888888887766542  33455666666666666


Q ss_pred             CCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC
Q 007515          124 GRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD  203 (600)
Q Consensus       124 g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  203 (600)
                      +..++++.++..+.....                                ...+..+.||++.++..++.++++.|++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  128 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDL--------------------------------NKITNQGVTCLHLAVGKKWFEVSQFLIENG  128 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccccccccccccccc--------------------------------cccccccccccccccccchhhhhhhhhhhc
Confidence            666666665555432211                                123445566666666666666666666666


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHH
Q 007515          204 PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM  268 (600)
Q Consensus       204 ~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll  268 (600)
                      ..... .|..|+||||.|+..|+.++++.|++.++..++.+|..|+||||+|+++|+.+++++|+
T Consensus       129 ~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         129 ASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             CCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccc-cCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHH
Confidence            65543 55666666666666666666666665544333333333333333333333333333333

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-32  Score=267.14  Aligned_cols=264  Identities=20%  Similarity=0.209  Sum_probs=232.4

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcC
Q 007515           78 KMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG  157 (600)
Q Consensus        78 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g  157 (600)
                      +++|+||.|++.|+.++|++|++.|+++....+..|.||||+|+..|+.+++++|++.+...........+|.+.+...+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            35799999999999999999999999987777788999999999999999999999999988877777888999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCC---------CCCCCCCCHHHHHHHcCCHH
Q 007515          158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS---------LPDNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       158 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~---------~~d~~g~tpL~~Aa~~g~~~  228 (600)
                      ..+.....++...+.. ..+..+.++++.|+..++...++.++....+...         ..+..|.||||+|+.+|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          84 SVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             CHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             Cccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            9999999998876654 6788899999999999999999999987665432         13456899999999999999


Q ss_pred             HHHHHHhccccccccccccccchhhHhHh----cCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHH
Q 007515          229 IIDEILSLNLQSAEMRTIHGETVLHLTVK----NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  304 (600)
Q Consensus       229 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~----~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll  304 (600)
                      +++.|++..+..++..+..|.++++.+..    .+..+++++|++.   +..+|.+|.+|.||||.|+..++.+++++|+
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~---ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC---CCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            99999998777888888889888776554    3456789999887   6678999999999999999999999999999


Q ss_pred             h-cCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccccC
Q 007515          305 K-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  349 (600)
Q Consensus       305 ~-~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~~  349 (600)
                      + .|+++|.+|.+|.|||++|..    .++.+++++|+++||++..
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence            6 699999999999999999654    5789999999999998653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-32  Score=259.83  Aligned_cols=226  Identities=23%  Similarity=0.276  Sum_probs=196.8

Q ss_pred             CcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCH
Q 007515           80 ETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHL  159 (600)
Q Consensus        80 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~  159 (600)
                      +||||+||+.|+.++|+.|++..+.....+|.+|+||||+|+..|+.+++++|++++++++..                 
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-----------------   63 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-----------------   63 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG-----------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccc-----------------
Confidence            589999999999999999998887777888999999999999999999999999887755422                 


Q ss_pred             HHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 007515          160 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS-SLPDNEGRTPLHWAAIKGRINIIDEILSLNL  238 (600)
Q Consensus       160 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~-~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  238 (600)
                                    ...+..|.+|+|+++..+..++++.++..+.... ...+..+.+|++.++..++.++++.|++.+ 
T Consensus        64 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-  128 (229)
T d1ixva_          64 --------------DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-  128 (229)
T ss_dssp             --------------GCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             --------------ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhc-
Confidence                          1346679999999999999999999998876543 335677899999999999999999999977 


Q ss_pred             cccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh-cCCCcccccCCC
Q 007515          239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKG  317 (600)
Q Consensus       239 ~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~gad~n~~n~~G  317 (600)
                      ......+..|+||||+|+..++.+++++|++..  ...+|.+|.+|+||||+|+..++.+++++|++ .|+|++.+|.+|
T Consensus       129 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~--~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         129 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT--CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ccccccCCCCCCccchhhhcccccccccccccc--cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            456778899999999999999999999999873  34689999999999999999999999999995 699999999999


Q ss_pred             CCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          318 YTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       318 ~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      +||||+|..       .+++++|++.|++
T Consensus       207 ~t~l~~A~~-------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         207 AKAEDVALN-------EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCTGGGCSC-------HHHHHHHHHHCCC
T ss_pred             CCHHHHHhh-------HHHHHHHHHcCCC
Confidence            999999642       3699999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=6e-32  Score=263.05  Aligned_cols=245  Identities=20%  Similarity=0.176  Sum_probs=166.6

Q ss_pred             ccCCCCCcHhHHHHHcCCHHHHHHHHhCCcc--cccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHH
Q 007515           74 AENEKMETPLHEACREGRLNFVKLFVGIDPS--VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLH  151 (600)
Q Consensus        74 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh  151 (600)
                      ..+++|+||||+||++|+.+++++|++.+++  .....|..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            4577888888888888888888888876543  34556778888888888888888888888888777766666666777


Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 007515          152 VSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID  231 (600)
Q Consensus       152 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~  231 (600)
                      .|+..++.++++.|++.......    .............                  .......++.............
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  141 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPR----DASDTYLTQSQDC------------------TPDTSHAPAAVDSQPNPENEEE  141 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCC----CC---------------------------------------------------
T ss_pred             hhhccCchHHHHHHHhhccchhc----ccchhhhhHHhhh------------------cccchHHHHHHHhhcchhHHHH
Confidence            77777777777766655433211    0110100000000                  0000111111111111222222


Q ss_pred             HHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcc
Q 007515          232 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  311 (600)
Q Consensus       232 ~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n  311 (600)
                      .+........+.+|..|+||||+|+.+++.+++++|++....  ..+..+..|+||||+|++.++.+++++|+++|+|+|
T Consensus       142 ~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD--LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHhhhcCcccccccccCcccccccccccccccccchhccccc--ccccccccccccccccccccHHHHHHHHHHCCCCCC
Confidence            333333445677889999999999999999999999987432  234457889999999999999999999999999999


Q ss_pred             cccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          312 AINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       312 ~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      .+|..|.|||++|    ...++.+++++|+++||+
T Consensus       220 ~~d~~g~t~L~~A----~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         220 ARMYGGRTPLGSA----LLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCCTTSCCHHHHH----HTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHH----HHCCCHHHHHHHHHcCCC
Confidence            9999999999995    456789999999999996

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=6.4e-32  Score=265.89  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=151.5

Q ss_pred             cHHHHHHHh-CCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHH--------hCCcccccccCCCCCcHH
Q 007515           47 TILHLTARF-GHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--------GIDPSVIYKLNRDNESVL  117 (600)
Q Consensus        47 T~Lh~Aa~~-g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~~~g~tpL  117 (600)
                      ||||+|++. |+.++++.|.+.+...  ..+..|+||||+||..|+.++|+.|+        +.|++++ .+|.+|.|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~--~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTT--CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCc--CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-ccCCCCCeee
Confidence            566654444 4444444444444331  11234667777777777766666553        3344443 3466666666


Q ss_pred             HHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCcc--ccccCCCCCChHHHHHHhcCcH--
Q 007515          118 YVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQE--FAWKKDLNGHTPLHLSCSKGHL--  193 (600)
Q Consensus       118 ~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~--  193 (600)
                      |+|+..|+.+++++|+++|++++..+..|.|||+.|+..++.+++..+......  .....+..+.++.+.+...+..  
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ  158 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccc
Confidence            666666666666666666666665555566666666666666666665544321  1224455666777766665542  


Q ss_pred             -HHHHHHHhcCCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHH
Q 007515          194 -EITRELLKLDPDL-------SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK  265 (600)
Q Consensus       194 -~iv~~Ll~~~~~~-------~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~  265 (600)
                       ..+..+.+.....       ....+..|.||||.++..++.++++.++...+.....+|..|+||||+|++.|+.++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~  238 (277)
T d2fo1e1         159 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  238 (277)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence             2333333322211       11244566777777777777777777666665666666777777777777777777777


Q ss_pred             HHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHh
Q 007515          266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  305 (600)
Q Consensus       266 ~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  305 (600)
                      +|++.   +.++|.+|.+|+||||+|++.|+.++|++|++
T Consensus       239 ~Ll~~---gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         239 YLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHC---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            77765   45567777777777777777777777777664

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=5.7e-31  Score=261.32  Aligned_cols=247  Identities=22%  Similarity=0.251  Sum_probs=159.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      +.|+||.||..|+.++|++|++.|++ ++.+|..|.||||+|+..|+.++|++|++.+.+.. ..+..+.+||+.|+..+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-ccccccccccccccccc
Confidence            34777777777777777777777766 67777777777777777777777777777766542 33556666666666666


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCC
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP  204 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  204 (600)
                      +.++++.|++++......                                  |..|.+|+++|+..++.+.++.++....
T Consensus       118 ~~~~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~ll~~~~  163 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAV----------------------------------NSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCC----------------------------------CTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             ccchhhcccccCcccccc----------------------------------cccCccccccccccccchhccccccccc
Confidence            666666666665544433                                  4445555555555555555555443221


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCC
Q 007515          205 DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG  284 (600)
Q Consensus       205 ~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G  284 (600)
                      .........+..+.        .......+..........+..|.||||.|+..|+.+++++|++.   +.++|.+|.+|
T Consensus       164 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~---g~din~~~~~g  232 (291)
T d1s70b_         164 VDIEAARKEEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDG  232 (291)
T ss_dssp             CCHHHHHHHHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTC
T ss_pred             cccccccccccccc--------cccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccc---eecccccccCC
Confidence            11000000000000        01111122222233344556677777777777777777777765   55688899999


Q ss_pred             ChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          285 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       285 ~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      +||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|.+        +++++|.+...+
T Consensus       233 ~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e--------~~~~~L~~~~~~  286 (291)
T d1s70b_         233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE--------DILGYLEELQKK  286 (291)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS--------GGGHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH--------HHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999642        477777766543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.7e-30  Score=257.90  Aligned_cols=243  Identities=19%  Similarity=0.200  Sum_probs=194.0

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHc
Q 007515           10 MERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACRE   89 (600)
Q Consensus        10 ~~~~L~~A~~~gd~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~   89 (600)
                      ....|+.|+..||.+.|+.+++.+.+.  ...+..|.||||+|+..|+.++|++|++.+.+ ....+..+.|||+.|+..
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadv--n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcHHHHHHhcCCceeeeeecccccc-cccccccccccccccccc
Confidence            346799999999999999999988653  34577899999999999999999999999887 677888999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCc-ccccccCCCChHHHHHHhcCCHHHHHHHHhc
Q 007515           90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS-LLILEVDGLTTSLHVSAMAGHLDIVKELLEA  168 (600)
Q Consensus        90 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~-~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~  168 (600)
                      |+.++++.|++.+... ...+..+.+|+++|+..+..+.++.++.... ...........+.       .......+.. 
T Consensus       117 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-  187 (291)
T d1s70b_         117 GYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDARQWLNS-  187 (291)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HHHHHHHHHH-
T ss_pred             cccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccc-------cccchhhhcc-
Confidence            9999999999988765 4458899999999999999999999986432 2211110000011       1122222222 


Q ss_pred             CccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc
Q 007515          169 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG  248 (600)
Q Consensus       169 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  248 (600)
                      ........+..|.||||.|+..|+.++++.|++.|++++. ++.+|+||||+|+..|+.+++++|++.+ .+++.+|..|
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~-~~~~g~TpL~~A~~~g~~~iv~lLl~~G-adv~~~d~~G  265 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVG  265 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTS
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccceecccc-cccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCC
Confidence            3333346778899999999999999999999999998865 7889999999999999999999999977 4678888899


Q ss_pred             cchhhHhHhcCchhHHHHHHHh
Q 007515          249 ETVLHLTVKNNQYEAVKYLMET  270 (600)
Q Consensus       249 ~t~Lh~Av~~~~~~iv~~Ll~~  270 (600)
                      +||||+|++    +++++|.+.
T Consensus       266 ~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         266 QTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             CCTTTSCCS----GGGHHHHHH
T ss_pred             CCHHHHHHH----HHHHHHHHH
Confidence            999999975    566666554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.1e-30  Score=256.91  Aligned_cols=255  Identities=18%  Similarity=0.233  Sum_probs=208.4

Q ss_pred             CcHhHHHHH-cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHH--------HhCCcccccccCCCChHH
Q 007515           80 ETPLHEACR-EGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQL--------LNYSSLLILEVDGLTTSL  150 (600)
Q Consensus        80 ~TpLh~Aa~-~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~L--------l~~~~~~~~~~~~~~t~L  150 (600)
                      +||||+|+. .|+.++++.|.+.+.+...  +.+|+||||+|+..|+.+++++|        ++.|++++..+..|.|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~--~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC--CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC--CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            589996655 4677777777777666532  35699999999999999988777        466888888888999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCC--CCCCCCCCCCCCHHHHHHHcCCHH
Q 007515          151 HVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP--DLSSLPDNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       151 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpL~~Aa~~g~~~  228 (600)
                      |+|+..|+.+++++|++.+.++. .+|.+|.|||++|+..++.++++.+.....  ......+..+.++.+.+...+..+
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             ccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            99999999999999999999876 789999999999999999999999887642  112336778899999999887654


Q ss_pred             HH---HHHHhccc-------cccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHH
Q 007515          229 II---DEILSLNL-------QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT  298 (600)
Q Consensus       229 ~v---~~Ll~~~~-------~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~  298 (600)
                      ..   ..+.+...       ......+..|.|+||.++..++.+++++++...  +...+.+|..|+||||+|+..|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~--~~~~~~~d~~g~tpL~~A~~~g~~~  235 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIE  235 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHH
Confidence            33   33333221       122345668999999999999999999877653  4467889999999999999999999


Q ss_pred             HHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHh
Q 007515          299 MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA  343 (600)
Q Consensus       299 iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~  343 (600)
                      ++++|+++|+|+|.+|.+|.|||++|..    .++.+++++|++.
T Consensus       236 iv~~Ll~~gadin~~d~~G~T~L~~A~~----~~~~~iv~lL~~c  276 (277)
T d2fo1e1         236 VVMYLIQQGASVEAVDATDHTARQLAQA----NNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHTTCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTT
T ss_pred             HHHHHHHCcCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHh
Confidence            9999999999999999999999999654    5678999999763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.5e-28  Score=228.40  Aligned_cols=218  Identities=21%  Similarity=0.275  Sum_probs=164.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHh----CchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           44 SLNTILHLTARFGHEELASEILKL----CPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~~----~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      +|+||||+||.+|+.++|+.|++.    +.+ ++.+|..|.||||+|+..|+.+++++|++.++... .....+.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhccccccccccccccccccc-cccccccccccc
Confidence            589999999999999999998863    334 78889999999999999999999999999887764 347788899999


Q ss_pred             HHHhCCHHHHHHHHhCCccc----ccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHH
Q 007515          120 ACERGRLDVAKQLLNYSSLL----ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI  195 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~----~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  195 (600)
                      |...++.++++.+.......    +.......++|+.+...........|.....+.....+..|.+||+.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            99999998888776643322    12223344577777777777777777777666665666677777777777777777


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHH
Q 007515          196 TRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK  265 (600)
Q Consensus       196 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~  265 (600)
                      ++.+++.+.+... +|..|.||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+++|+.+++|
T Consensus       160 ~~~~~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         160 VQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhcccccc-ccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            7777777776654 6777777777777777777777777766 346667777777777777777766654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-27  Score=222.90  Aligned_cols=222  Identities=22%  Similarity=0.192  Sum_probs=144.8

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHh----CCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHH
Q 007515           77 EKMETPLHEACREGRLNFVKLFVG----IDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHV  152 (600)
Q Consensus        77 ~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~  152 (600)
                      ++|+||||+||..|+.++++.|++    .+.++ ...|..|.||||+|+..|+.+++++|++++++.+.....+.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            368888888888888888887764    44444 3446777777777777777777777777776665554445555555


Q ss_pred             HHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 007515          153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE  232 (600)
Q Consensus       153 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~  232 (600)
                      |...++.++++.+........                               ...........+||+.+.........+.
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~  128 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGT-------------------------------LDLEARNYDGLTALHVAVNTECQETVQL  128 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTS-------------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccchhhhhhcccccc-------------------------------ccccccccccccccccccccccchhhhh
Confidence            555555555555444322111                               1111123344556666666666666666


Q ss_pred             HHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCccc
Q 007515          233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA  312 (600)
Q Consensus       233 Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~  312 (600)
                      +...........+..+.++|+.|+..+...+++.+++.   +...+.+|.+|+||||+|+..|+.+++++|+++|+|+|.
T Consensus       129 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~  205 (228)
T d1k1aa_         129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL  205 (228)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh---ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            65555444444555666666666666666666666665   445677788888888888888888888888888888888


Q ss_pred             ccCCCCCHHHHHhhhcCCcchhhHH
Q 007515          313 INRKGYTALDVVESDASNSGALQIV  337 (600)
Q Consensus       313 ~n~~G~T~l~~a~~~a~~~~~~~i~  337 (600)
                      +|.+|.|||++    |...++.+|+
T Consensus       206 ~d~~G~TpL~~----A~~~~~~div  226 (228)
T d1k1aa_         206 KNCHNDTPLMV----ARSRRVIDIL  226 (228)
T ss_dssp             CCTTSCCTTTT----CSSHHHHHHH
T ss_pred             CCCCCCCHHHH----HHhCCCcccc
Confidence            88888888888    4445555554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-28  Score=232.84  Aligned_cols=196  Identities=23%  Similarity=0.265  Sum_probs=135.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHH----hCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 007515           44 SLNTILHLTARFGHEELASEILK----LCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYV  119 (600)
Q Consensus        44 ~g~T~Lh~Aa~~g~~e~v~~Ll~----~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  119 (600)
                      +|+||||+|+..|+.++++.|++    .+.. ++.+|..|+||||+||..|+.+++++|++.++++. ..|..|.|||+.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCcccccccccccccccccccccccccc-cccccccccccc
Confidence            48999999999999766665554    4444 78899999999999999999999999999998874 458899999999


Q ss_pred             HHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHH
Q 007515          120 ACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL  199 (600)
Q Consensus       120 A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  199 (600)
                      |+..|+.++++.|++.+......                            .........|.||||.|+..++.+++++|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~----------------------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  130 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLH----------------------------SILKATNYNGHTCLHLASIHGYLGIVELL  130 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSS----------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccchhhhhccccccc----------------------------ccccccccccchhhhHHhhcCChhheeee
Confidence            99999999999998876543211                            01112333455666666666666666666


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHh
Q 007515          200 LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET  270 (600)
Q Consensus       200 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~  270 (600)
                      ++.++......+.+|.||||+|++.|+.+++++|++.+ .+++.+|.+|+||||+|++.++.+++++|++.
T Consensus       131 ~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         131 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             cccCcccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            66665555544455666666666666666666666555 34555566666666666666666666666554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=226.30  Aligned_cols=197  Identities=24%  Similarity=0.292  Sum_probs=159.1

Q ss_pred             CChHHHHHHhcCCHHH----HHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 007515          146 LTTSLHVSAMAGHLDI----VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA  221 (600)
Q Consensus       146 ~~t~Lh~A~~~g~~~~----v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  221 (600)
                      |.||||+|+..|+.++    ++.+...+..++ .+|.+|+||||+||..|+.+++++|++.|+++.. .|..|.|||+.|
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~~   79 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLA   79 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccc-cccccccccccc
Confidence            5567777777776543    333444455544 7788999999999999999999999999999865 789999999999


Q ss_pred             HHcCCHHHHHHHHhcccc-----ccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCC-CCCCChHhHHHHhCC
Q 007515          222 AIKGRINIIDEILSLNLQ-----SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP-DNDGNTILHLATAGK  295 (600)
Q Consensus       222 a~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~-d~~G~T~Lh~A~~~~  295 (600)
                      +..|+.++++.|+..+..     ........|.||||.|+..++.+.+++++..   +..++.. +.+|+||||+|+..|
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~---~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc---CcccccccccCCCCccccccccc
Confidence            999999999999986532     2234455689999999999999999999887   3444444 567999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccCCCCCHHHHHhhhcCCcchhhHHHHHHHhcccccCCC
Q 007515          296 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQL  351 (600)
Q Consensus       296 ~~~iv~~Ll~~gad~n~~n~~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~~~~~~  351 (600)
                      +.+++++|+++|+|+|.+|.+|+|||++    +...++.+++++|.+.+.+.....
T Consensus       157 ~~~~v~~Ll~~gad~~~~~~~G~tpl~~----A~~~~~~~~~~~l~~~~~~~~~~~  208 (221)
T d1iknd_         157 NPDLVSLLLKCGADVNRVTYQGYSPYQL----TWGRPSTRIQQQLGQLTLENLQML  208 (221)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGG----CTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred             cHHHHHHHHhcCCcccccCCCCCCHHHH----HHHCCCHHHHHHHHHcCCcccccc
Confidence            9999999999999999999999999999    556678999999999887755433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=6.6e-27  Score=219.80  Aligned_cols=206  Identities=23%  Similarity=0.300  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCc
Q 007515           58 EELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS  137 (600)
Q Consensus        58 ~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~  137 (600)
                      .|+|++|++.|+++....|.+|+||||+||..|+.+++++|++.++.+. ..+..+.++++.++..++.+..........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccccccccccccccccccc
Confidence            3666677776666222346666677777766666666666666666553 335566666666666665555444443322


Q ss_pred             ccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCH
Q 007515          138 LLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP  217 (600)
Q Consensus       138 ~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  217 (600)
                                                       ......+..|.++.+.+.........+.|.+.+.++.. .+..|.||
T Consensus        81 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~t~  126 (209)
T d1ot8a_          81 ---------------------------------TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA-ADNSGKTA  126 (209)
T ss_dssp             ---------------------------------CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTC-BCTTSCBH
T ss_pred             ---------------------------------cccccccccccccccccccccchhhhhhhhhhcccccc-cCCCCCCc
Confidence                                             22222233344444444444444444444444444322 34444444


Q ss_pred             HHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcH
Q 007515          218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT  297 (600)
Q Consensus       218 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  297 (600)
                      |+.++..|..++++.+++.+ ...+..|..|.||||+|+.+|+.+++++|++.   +.++|.+|.+|+||||+|++.|+.
T Consensus       127 l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         127 LHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKALLDN---FANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chhhcccCcceeeeeecccc-ccccccccccccccchhccccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCH
Confidence            44444444444444444433 22333344444444444444444444444443   233444555555555555555555


Q ss_pred             HHHHH
Q 007515          298 TMVIY  302 (600)
Q Consensus       298 ~iv~~  302 (600)
                      ++|++
T Consensus       203 ~iv~l  207 (209)
T d1ot8a_         203 DIVRL  207 (209)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            55544

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.8e-26  Score=215.38  Aligned_cols=207  Identities=21%  Similarity=0.272  Sum_probs=181.0

Q ss_pred             HHHHHHHHhhchhhhhccCCCCCCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 007515           23 TQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGID  102 (600)
Q Consensus        23 ~~~~~~ll~~~~~~l~~~~~~~g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~  102 (600)
                      .|.|+.|++.+.+ ++...|.+|+||||+||..|+.+++++|++.++. ++.++..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-ccccccccccccccccccccccccccccccc
Confidence            4788999998877 4455577899999999999999999999999988 7899999999999999999999988888777


Q ss_pred             cccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCCh
Q 007515          103 PSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT  182 (600)
Q Consensus       103 ~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  182 (600)
                      ..........+.++.+.+.........+.|..++.+.+..+..+.|||+.++..+..++++.+++.+.+.+ ..|.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~T  158 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDDKDET  158 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc-cccccccc
Confidence            66666667788999999999999999999999988887777778889999999999999999998887775 67888999


Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 007515          183 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI  233 (600)
Q Consensus       183 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~L  233 (600)
                      |||+|+..|+.++++.|+++|+++.. .|..|+||||+|+++|+.++|++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad~n~-~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFANREI-TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999988754 788899999999999999988865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2.8e-28  Score=247.79  Aligned_cols=234  Identities=17%  Similarity=0.132  Sum_probs=159.7

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHH---HHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCccccccc--CCC
Q 007515           72 VAAENEKMETPLHEACREGRLNFVKL---FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV--DGL  146 (600)
Q Consensus        72 l~~~n~~g~TpLh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~--~~~  146 (600)
                      +..++..|.||||+||.+|+.+++++   |++.++++. ..+.+|.||||+|+.+|+.++|++|++++++++...  ..|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            45667788888888888888776665   566666653 347778888888888888888888888887766543  346


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCcccc--ccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCC------CCCCCCCCHH
Q 007515          147 TTSLHVSAMAGHLDIVKELLEARQEFA--WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS------LPDNEGRTPL  218 (600)
Q Consensus       147 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~------~~d~~g~tpL  218 (600)
                      .||||+|+..|+.+++++|++.++...  ...+.+|.||+|.|+..|+.+++++|++.|++...      .....+.+++
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  241 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF  241 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHH
Confidence            778888888888888888888776542  22344566777788888888888888887754321      1223344566


Q ss_pred             HHHHHcCCHHHHHHHHhccccc-cccc-------cccccchhhHhHhcCchhHHHHHHHhccccc--ccCCCCCCCChHh
Q 007515          219 HWAAIKGRINIIDEILSLNLQS-AEMR-------TIHGETVLHLTVKNNQYEAVKYLMETLNITK--LANMPDNDGNTIL  288 (600)
Q Consensus       219 ~~Aa~~g~~~~v~~Ll~~~~~~-~~~~-------~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~--~~n~~d~~G~T~L  288 (600)
                      +.+...+..+....+....... .+..       ...+.++++.|+..+..+++++|++......  ..+..+.+|+|||
T Consensus       242 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~L  321 (346)
T d2ajaa1         242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL  321 (346)
T ss_dssp             HHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHH
T ss_pred             HHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHH
Confidence            6655555554444333322211 1111       1134578889999999999999998754433  2345567899999


Q ss_pred             HHHHhCCcHHHHHHHHhc
Q 007515          289 HLATAGKLTTMVIYLLKL  306 (600)
Q Consensus       289 h~A~~~~~~~iv~~Ll~~  306 (600)
                      |+|++.|+.++|++|++.
T Consensus       322 hlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         322 RLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHcCcHHHHHHHhCC
Confidence            999999999999999953

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=8.3e-27  Score=236.80  Aligned_cols=230  Identities=15%  Similarity=0.132  Sum_probs=172.5

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHH---HHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccc-cCCCCCcH
Q 007515           41 VPGSLNTILHLTARFGHEELASE---ILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYK-LNRDNESV  116 (600)
Q Consensus        41 ~~~~g~T~Lh~Aa~~g~~e~v~~---Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tp  116 (600)
                      .+..|.|+||+||++||.+++++   |++.++. ++.+|..|.||||+||+.|+.++|++|++.++++... .+.+|.||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            35578999999999999888776   5666765 8889999999999999999999999999999887543 24568999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCcccc---cccCCCChHHHHHHhcCCHHHHHHHHhcCccccc------cCCCCCChHHHHH
Q 007515          117 LYVACERGRLDVAKQLLNYSSLLI---LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAW------KKDLNGHTPLHLS  187 (600)
Q Consensus       117 L~~A~~~g~~e~v~~Ll~~~~~~~---~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~A  187 (600)
                      ||+|+.+|+.++|++|++.++...   ....++.+|+|.|+..|+.+++++|++.+.+...      .....+.++++.+
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            999999999999999999987543   3344566788899999999999999998765531      1223344666666


Q ss_pred             HhcCcHHHHHHHHhcCCCCC-CCCCC-------CCCCHHHHHHHcCCHHHHHHHHhccccc----cccccccccchhhHh
Q 007515          188 CSKGHLEITRELLKLDPDLS-SLPDN-------EGRTPLHWAAIKGRINIIDEILSLNLQS----AEMRTIHGETVLHLT  255 (600)
Q Consensus       188 ~~~g~~~iv~~Ll~~~~~~~-~~~d~-------~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~----~~~~~~~g~t~Lh~A  255 (600)
                      +..+..+....+.....+.. ...+.       .+.++++.|+..|+.+++++|++.+...    ....+.+|+||||+|
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence            66655555444443333211 11111       1246888999999999999999866432    233445789999999


Q ss_pred             HhcCchhHHHHHHHhc
Q 007515          256 VKNNQYEAVKYLMETL  271 (600)
Q Consensus       256 v~~~~~~iv~~Ll~~~  271 (600)
                      ++.|+.+++++|++.+
T Consensus       325 ~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         325 LRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHTCTTHHHHHTTSH
T ss_pred             HHcCcHHHHHHHhCCC
Confidence            9999999999998763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-24  Score=191.94  Aligned_cols=154  Identities=21%  Similarity=0.195  Sum_probs=94.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCH
Q 007515           47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRL  126 (600)
Q Consensus        47 T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  126 (600)
                      ++||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+ .|+.+++++|++.++++ ...+..+.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            567777777777777777777666 6677777777777664 56777777777776665 33466666777777777777


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcC
Q 007515          127 DVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD  203 (600)
Q Consensus       127 e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  203 (600)
                      +.++.|++.+...+..+..+.+|+|.|+..++.++++.|+++++.....+|.+|.||||+|+..++.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            66666666665554444444445555555555555555555544333344555555555555555555555555443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.7e-25  Score=219.54  Aligned_cols=190  Identities=16%  Similarity=0.097  Sum_probs=108.3

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCH---HHHHHHHhcCccccccCCCCCChHHH
Q 007515          109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHL---DIVKELLEARQEFAWKKDLNGHTPLH  185 (600)
Q Consensus       109 ~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~g~tpLh  185 (600)
                      .|.+|+||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.   +.+..+++.........|..|+||||
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            356677777777777777777777777766666666666666666655431   11112222111112234555666666


Q ss_pred             HHHhcCc----HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCch
Q 007515          186 LSCSKGH----LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY  261 (600)
Q Consensus       186 ~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~  261 (600)
                      .++..+.    ...+++.                          ...++..+++.+..........+.++++.+......
T Consensus       183 ~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYY--------------------------LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  236 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHH--------------------------HHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             HHHHHhCccccHHHHHHH--------------------------HHHHHHHHHhcCCcchhcccccccchhHHHHhcchH
Confidence            5553321    1111111                          112345555655555555556666777766665555


Q ss_pred             hHHHHHHHhcccccccCCCCCCCChHhHHHHhCCcHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          262 EAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       262 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      ..+..+.........+|.+|.+|+||||+|++.|+.++|++|++.|||++.+|+.|+||||+|
T Consensus       237 ~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         237 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             HHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            444433222122335899999999999999999999999999999999999999999999996

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=187.13  Aligned_cols=154  Identities=25%  Similarity=0.309  Sum_probs=116.9

Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHH
Q 007515           81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLD  160 (600)
Q Consensus        81 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (600)
                      +|||+||..|+.++|+.|+++|+++ ...|..|.||||+|+ .|+.+++++|++++.+++.....+.++++.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            7888888888888888888888876 445888888888775 67888888888888877766666667777777777777


Q ss_pred             HHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 007515          161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN  237 (600)
Q Consensus       161 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~  237 (600)
                      .++.+++.+.+.. ..|..|.+|||+|+..++.++++.|+++++.....+|..|.||||+|++.|+.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            7777777766655 566777777777777777777777777776444556777777777777777777777777653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.5e-23  Score=184.91  Aligned_cols=149  Identities=23%  Similarity=0.292  Sum_probs=90.9

Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHH
Q 007515           81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLD  160 (600)
Q Consensus        81 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (600)
                      ||||.||+.|+.++|+.|++.+++..  .|..|.||||+|+..++.++++.++..............++++.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            44445555555555555544444332  2444455555555555555555444444433333333444555555666666


Q ss_pred             HHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 007515          161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI  233 (600)
Q Consensus       161 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~L  233 (600)
                      +++.+++.+.+.. .+|.+|+||||+|+..|+.+++++|++.|+++.. .|.+|.||||+|+.+|+.|++++|
T Consensus        82 ~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcc-cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666666555544 5677788888888888888888888888887754 677888888888888888887654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-23  Score=185.48  Aligned_cols=150  Identities=21%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHH
Q 007515           48 ILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLD  127 (600)
Q Consensus        48 ~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e  127 (600)
                      .||.||..|+.++|++|++.++..++..|..|+||||+|+ .|+.+++++|++.+.++. ..+..|.+|++.++..++.+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc-cccccccccccccccccccc
Confidence            3777777777777777776655446667777777777665 366677777776666553 23555666666666666666


Q ss_pred             HHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHh
Q 007515          128 VAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK  201 (600)
Q Consensus       128 ~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  201 (600)
                      +++++++++.+++..+..+.||||+|+..|+.+++++|+ .+.++. .+|.+|+||||+|+..|+.+++++|++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            666666655544433333334444444444444443333 222222 334444444444444444444444443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.2e-23  Score=184.23  Aligned_cols=152  Identities=26%  Similarity=0.334  Sum_probs=118.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHH
Q 007515           81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLD  160 (600)
Q Consensus        81 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (600)
                      +.||.||..|+.++|+.|++.+.......|..|.||||+|+ .|+.+++++|++++.+++.....+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            45899999999999999888755445666888899998876 47888888888888887776666777888888888888


Q ss_pred             HHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 007515          161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL  236 (600)
Q Consensus       161 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  236 (600)
                      +++.+++.+++++ .+|..|+||||+||..|+.+++++|+ .++++.. +|.+|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR-RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC-CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccc-cCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888888777665 56777888888888888888887666 4666543 677788888888888888888777753

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=8.7e-23  Score=181.33  Aligned_cols=151  Identities=17%  Similarity=0.198  Sum_probs=138.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      ++||||.||+.|+.++|+.||+.+++ ++ .|..|.||||+|+..++.++++.++....... ..+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCcccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            45999999999999999999999986 33 68999999999999999999999998877664 34778889999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHH
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL  199 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  199 (600)
                      +.+++++++.++.+....+..|.||||+|+..|+.+++++|++.+.++. ..|.+|.||||+|+.+|+.+++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999988888889999999999999999999999999887 7899999999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.9e-22  Score=200.46  Aligned_cols=83  Identities=25%  Similarity=0.184  Sum_probs=65.1

Q ss_pred             hhcc-CCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCC-------HHHHHHHHhCCccccccc
Q 007515           72 VAAE-NEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGR-------LDVAKQLLNYSSLLILEV  143 (600)
Q Consensus        72 l~~~-n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-------~e~v~~Ll~~~~~~~~~~  143 (600)
                      ++.. |..|+||||+||..|+.++|++|++.|+++. .+|..|+||||.||..++       .++++++..   .....+
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d  174 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILED  174 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEEC
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcc
Confidence            4433 8899999999999999999999999999885 569999999999998765       245555543   334455


Q ss_pred             CCCChHHHHHHhcCC
Q 007515          144 DGLTTSLHVSAMAGH  158 (600)
Q Consensus       144 ~~~~t~Lh~A~~~g~  158 (600)
                      ..+.||||.++..+.
T Consensus       175 ~~g~t~lh~~~~~~~  189 (301)
T d1sw6a_         175 SMNRTILHHIIITSG  189 (301)
T ss_dssp             TTCCCHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHhC
Confidence            667889998886543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.8e-21  Score=164.50  Aligned_cols=105  Identities=23%  Similarity=0.304  Sum_probs=89.1

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC
Q 007515          216 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  295 (600)
Q Consensus       216 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  295 (600)
                      |||++|+++|+.++++.|++.+ .+++.+|..|+||||+|+.+++.+++++|++.   +.++|.+|.+|+||||+|+..|
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~---g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTT-CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS---SCTTTCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhh-hccccccccccccccccccccccccccccccc---cceeeecccccccchhhhhhcC
Confidence            6777777777777777777765 45666777788888888888888888888776   5568899999999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccCCCCCHHHHH
Q 007515          296 LTTMVIYLLKLGVDVNAINRKGYTALDVV  324 (600)
Q Consensus       296 ~~~iv~~Ll~~gad~n~~n~~G~T~l~~a  324 (600)
                      +.+++++|+++|+|+|.+|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.3e-21  Score=162.55  Aligned_cols=119  Identities=17%  Similarity=0.079  Sum_probs=70.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCchhhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhC
Q 007515           45 LNTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERG  124 (600)
Q Consensus        45 g~T~Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  124 (600)
                      +.++||+||+.|+.++|++|++.+.+ ++.+|..|.||||.|+ .|+.+++++|++.++++....+..+.||||+|+..|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            34667777777777777777776665 6667777777777553 567777777777766654332222334666666666


Q ss_pred             CHHHHHHHHhCCcccccccCCCChHHHHHHhcCCHHHHHHH
Q 007515          125 RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL  165 (600)
Q Consensus       125 ~~e~v~~Ll~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L  165 (600)
                      +.+++++|++++.+++..+..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            66666666555555444444444444444444444444444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-20  Score=162.25  Aligned_cols=125  Identities=25%  Similarity=0.272  Sum_probs=92.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCchhHHHHHHHhcccccccCCCCCCCChHhHHHHhCC
Q 007515          216 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  295 (600)
Q Consensus       216 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  295 (600)
                      ++|+.|+..|+.++++.|++.+ .+++.+|.+|+||||+|+..++.+++++|++.   +.++|.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~---g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQF---GVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-CCcccccccccccccccccccccccccccccc---ccccccccccCcccccccchhh
Confidence            3556666666666666666655 34555566666666666666666666666665   4567888999999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccC-CCCCHHHHHhhhcCCcchhhHHHHHHHhccc
Q 007515          296 LTTMVIYLLKLGVDVNAINR-KGYTALDVVESDASNSGALQIVPALEEAGAR  346 (600)
Q Consensus       296 ~~~iv~~Ll~~gad~n~~n~-~G~T~l~~a~~~a~~~~~~~i~~~L~~~ga~  346 (600)
                      +.+++++|+++|++++.++. .|.||++++.  +...++.+++++|+..+.+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~--a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC--SSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHH--HHHcChHHHHHHHHhHHHh
Confidence            99999999999999998875 5899988853  3456778999999876543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.8e-20  Score=158.00  Aligned_cols=50  Identities=24%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             HHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 007515          183 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI  233 (600)
Q Consensus       183 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~L  233 (600)
                      |||+|+..|+.+++++|+++|+++.. +|..|+||||+|+++|+.+++++|
T Consensus        72 ~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          72 PVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccc-ccCCCCCHHHHHHHcCCHHHHHHH
Confidence            44444444444444444444433322 333444444444444444444433

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=6.6e-21  Score=161.01  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=71.1

Q ss_pred             hHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhhHhHhcCch
Q 007515          182 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY  261 (600)
Q Consensus       182 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~Av~~~~~  261 (600)
                      |||++|++.|+.++++.|++.|+++.. .|.+|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccc-cccccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCch
Confidence            567777777777777777776666544 5666777777777777777777666665 34556666677777777777777


Q ss_pred             hHHHHHHHhcccccccCCCCCCCChHhHHH
Q 007515          262 EAVKYLMETLNITKLANMPDNDGNTILHLA  291 (600)
Q Consensus       262 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  291 (600)
                      +++++|++.   +.++|.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~---Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSK---GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTT---CCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcc---cccceeeCCCCCCHHHHH
Confidence            777777665   455667777777777766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=153.81  Aligned_cols=119  Identities=21%  Similarity=0.317  Sum_probs=63.3

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 007515          149 SLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN  228 (600)
Q Consensus       149 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~  228 (600)
                      +|+.|+..|+.++++.|++++.+++ .+|.+|+||||+|+..|+.+++++|++.+++... .|.+|+||||+|+..|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcc-cccccccccccccccccccccccccccccccccc-ccccCcccccccchhhHHH
Confidence            4555555555555555555555543 4555555666666555555566655555555433 4555566666666666666


Q ss_pred             HHHHHHhcccccccccc-ccccchhhH--hHhcCchhHHHHHHHh
Q 007515          229 IIDEILSLNLQSAEMRT-IHGETVLHL--TVKNNQYEAVKYLMET  270 (600)
Q Consensus       229 ~v~~Ll~~~~~~~~~~~-~~g~t~Lh~--Av~~~~~~iv~~Ll~~  270 (600)
                      +++.|++.+. +++..+ ..++|++++  |+++|+.+++++|+..
T Consensus        82 ~v~~Ll~~ga-~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTC-CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCC-CcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            6665555542 222222 234444333  3345556666666543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=6.5e-19  Score=155.57  Aligned_cols=125  Identities=18%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhchhh----hhccCCCCCCcHHHHHHHh---CCHHHHHHHHHhCchhhhccCCCCCcHhH
Q 007515           12 RHLFETILRGDTQAFLSLIQQDEAK----IKQTVPGSLNTILHLTARF---GHEELASEILKLCPEMVAAENEKMETPLH   84 (600)
Q Consensus        12 ~~L~~A~~~gd~~~~~~ll~~~~~~----l~~~~~~~g~T~Lh~Aa~~---g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh   84 (600)
                      ..|++|++.+|+..+++++.++.+.    .....+..|+||||+|++.   |+.++|++|++.+.+ ++.+|..|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccc
Confidence            4689999999999999999876442    1123356789999999985   678999999999987 8999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHhCCHHHHHHHHhCCcc
Q 007515           85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL  138 (600)
Q Consensus        85 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e~v~~Ll~~~~~  138 (600)
                      +||..|+.+++++|++.++++ ..+|..|.||||+|+..|+.+++++|++.+..
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999988 45699999999999999999999999986543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.2e-17  Score=147.26  Aligned_cols=92  Identities=22%  Similarity=0.312  Sum_probs=47.0

Q ss_pred             CCCCChHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccccchhh
Q 007515          177 DLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH  253 (600)
Q Consensus       177 d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  253 (600)
                      +..|+||||+|+..   ++.+++++|+++|++++. +|.+|+||||+|+..|+.++++.|++.+ .+++.+|..|+||||
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~-~d~~g~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLD  119 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh-hhhhhccccccccccccccccccccccC-ccccccCCCCCCHHH
Confidence            34455555555542   345555555555555433 4555555555555555555555555544 233444444455555


Q ss_pred             HhHhcCchhHHHHHHHh
Q 007515          254 LTVKNNQYEAVKYLMET  270 (600)
Q Consensus       254 ~Av~~~~~~iv~~Ll~~  270 (600)
                      +|+++|+.+++++|++.
T Consensus       120 ~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1         120 IAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHh
Confidence            55555555555544443