Citrus Sinensis ID: 007525
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | 2.2.26 [Sep-21-2011] | |||||||
| F6H2F8 | 608 | tRNA (guanine(37)-N1)-met | yes | no | 0.963 | 0.950 | 0.611 | 0.0 | |
| Q6NQ64 | 619 | tRNA (guanine(37)-N1)-met | yes | no | 0.96 | 0.930 | 0.581 | 0.0 | |
| F6VSS6 | 494 | tRNA (guanine(37)-N1)-met | yes | no | 0.555 | 0.674 | 0.418 | 4e-65 | |
| F4NUJ6 | 475 | tRNA (guanine(37)-N1)-met | N/A | no | 0.541 | 0.684 | 0.410 | 1e-64 | |
| B8A5G9 | 480 | tRNA (guanine(37)-N1)-met | yes | no | 0.538 | 0.672 | 0.417 | 5e-64 | |
| D0NLC2 | 411 | tRNA (guanine(37)-N1)-met | N/A | no | 0.545 | 0.795 | 0.409 | 4e-63 | |
| Q8TFG7 | 450 | tRNA (guanine(37)-N1)-met | yes | no | 0.495 | 0.66 | 0.421 | 7e-63 | |
| Q9D0C4 | 501 | tRNA (guanine(37)-N1)-met | yes | no | 0.503 | 0.602 | 0.407 | 2e-59 | |
| Q3MHN8 | 497 | tRNA (guanine(37)-N1)-met | yes | no | 0.561 | 0.678 | 0.377 | 8e-59 | |
| Q32P41 | 509 | tRNA (guanine(37)-N1)-met | yes | no | 0.56 | 0.660 | 0.387 | 8e-59 |
| >sp|F6H2F8|TRM51_VITVI tRNA (guanine(37)-N1)-methyltransferase 1 OS=Vitis vinifera GN=VIT_19s0014g03930 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/608 (61%), Positives = 452/608 (74%), Gaps = 30/608 (4%)
Query: 12 CTKLLLRPNPLPSVIFSPPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQS---SLPYG 68
TKL LRP+ L + S IH LF K P+TL ST A + Q+ +L YG
Sbjct: 2 VTKLFLRPHSLSFTLLSG-IH-LFPKTSLSKPITLCLLSTTATTPILTLTQTLDPNLSYG 59
Query: 69 PSLFKGKTPPTLKQQQDQ----QENETKAFIDETHFTRIFDIAALRVPAKDCYALESRLR 124
PSL KG P L Q Q E + D+ FTR+F++ A+RVP+KDC+ALE+RLR
Sbjct: 60 PSLHKGTKP--LNHQNHQLIAATPGEEECVFDKEAFTRVFNLTAIRVPSKDCFALENRLR 117
Query: 125 GHLLNWPRVRNIARVLGDEIETQFVKLLG---NNNDGSHGGNEDFSGVV----------G 171
GHLLNWPR+RN+ARV GDE+E VKLLG N++DGS DF + G
Sbjct: 118 GHLLNWPRIRNVARVPGDEVEDGLVKLLGEKRNSSDGSESEG-DFDSLNRRIYGKAEGDG 176
Query: 172 DEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGNGRKGE----LYV 227
+ ++ VL+R+ L K+FD++GF FRNLA++SR ++KKR++++E EG R G+ +
Sbjct: 177 EILSPVLYRDTLAKTFDSQGFANFRNLAKLSRPKKKKRRKEEERSEGKKRTGKNEFAMVE 236
Query: 228 VEVVEEERKEMSGLLGDEFRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRE 287
V EE +++ GLLG+EF+ ++WRGSTRLLLLDE DK VEE PEAIK +L++DT +
Sbjct: 237 VVEDGEEGEDLRGLLGEEFKR-KRWRGSTRLLLLDERYADKGVEELPEAIKAVLKEDTGQ 295
Query: 288 NTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKY 347
+ T T ELVKC+LTLFY+YW MNEILEALLP+GMI+PSAFE VGHIAHLNLR+EH P+K
Sbjct: 296 SMTSTFELVKCKLTLFYNYWQMNEILEALLPEGMIVPSAFEMVGHIAHLNLRDEHLPYKK 355
Query: 348 LIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTI 407
LIAKVVLDKNKPKIQTVVNK DAIHNDYRTMQLEVLAGN SLVT ++ + + T+
Sbjct: 356 LIAKVVLDKNKPKIQTVVNKTDAIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATV 415
Query: 408 YWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERN 467
YWNS+LATERQRLL+ F DVVCDVF+GVGPI I AAK VKRVYANDLNPYA++YLE N
Sbjct: 416 YWNSRLATERQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLESN 475
Query: 468 SVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPE 527
SVLNKLE+KI+VFNMDGRRFI+AMF S KA ITQVVMNLPNDA EFLDAFRGI+R +
Sbjct: 476 SVLNKLERKIKVFNMDGRRFINAMFTSDKAESITQVVMNLPNDAAEFLDAFRGIFRKKSR 535
Query: 528 DAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVL 587
D + P IH+YGFSKA+DPEFDFH+RIRIAL EVAV+VEM RVRLVAPGKWML ASF+L
Sbjct: 536 DKQLKLPMIHVYGFSKAQDPEFDFHQRIRIALSEVAVDVEMHRVRLVAPGKWMLRASFIL 595
Query: 588 PESVAFAR 595
P+SV FA+
Sbjct: 596 PKSVVFAK 603
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Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 8 |
| >sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana GN=At4g27340 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/614 (58%), Positives = 448/614 (72%), Gaps = 38/614 (6%)
Query: 16 LLRPNPLPSVIFSPPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQSSLPYGPSLFKGK 75
L R N LP + S KP + P TL F + + +S ++ PYGPSL KGK
Sbjct: 7 LFRANSLPFPVISSYSARFILKP-YPKPKTL-IFCVFSSNLSS----TTFPYGPSLLKGK 60
Query: 76 TP-------PTLKQQQDQQENETKAF---------IDETHFTRIFDIAALRVPAKDCYAL 119
P ++ + +D + F ++E FTR+F+I+A+RVPAKDC+AL
Sbjct: 61 KPVLDDIRLASIGRDRDAHRGKIGEFDESIEKDVLLNEDEFTRVFEISAIRVPAKDCFAL 120
Query: 120 ESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGG--------NEDFSGVV- 170
E+RLRGHLLNWPR+RNIARV GDEIE VKLLG D N G
Sbjct: 121 ENRLRGHLLNWPRIRNIARVPGDEIEEDVVKLLGRETDEEEEDEDSVVDSVNRRIRGKAE 180
Query: 171 --GDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEK-KEGKEGN--GRKGEL 225
G+ ++SVL R++L ++F++ G++KFRNLA+ISR +RK++ E+ +EGKE R+ E+
Sbjct: 181 GDGERLSSVLHRDKLARTFNSTGYLKFRNLAKISRPKRKRKTERTREGKEKEIASRRNEM 240
Query: 226 YVVEVVEEE--RKEMSGLLGDEFRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQ 283
VVEVVE ++ GLLG+ + +WRGSTRLLLLDE+ + V++ PEAIKVL +
Sbjct: 241 AVVEVVETRGGEEDFEGLLGEGYGSRGRWRGSTRLLLLDEKYSGEEVQDLPEAIKVLFAE 300
Query: 284 DTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQ 343
+ + + ELVKCRLTLFYDYW M EILEA+LPKGMI+PSAFE VGHIAHLNLR+EH
Sbjct: 301 AKMADASLSFELVKCRLTLFYDYWPMIEILEAVLPKGMIVPSAFEMVGHIAHLNLRDEHL 360
Query: 344 PFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRC 403
P+K LIAKVVLDKN+PKIQTVVNKID IHND+RTMQLEVLAGN+SLVT+++ + L
Sbjct: 361 PYKRLIAKVVLDKNQPKIQTVVNKIDPIHNDFRTMQLEVLAGNHSLVTLVVENGLRFHVD 420
Query: 404 FDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDY 463
+YWNSKL TERQRLL GF+ DVVCDVFAGVGPI + AA+IVKRVYANDLNP+AV++
Sbjct: 421 LARVYWNSKLGTERQRLLLGFDQNDVVCDVFAGVGPIALAAARIVKRVYANDLNPHAVEF 480
Query: 464 LERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYR 523
+E+NSV+NKLEK+IE+FNMDGRRFI AMF+S+K K+TQVVMNLP DA E LDAFRG+Y
Sbjct: 481 MEQNSVVNKLEKRIEIFNMDGRRFIKAMFSSEKGQKVTQVVMNLPKDAAESLDAFRGVYN 540
Query: 524 DRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCA 583
DR D +FP IH+YGFSKA DPEFDFHERIRIAL EVAV+V+MR+VRLVAPGKWMLCA
Sbjct: 541 DRHRDEGLSFPTIHVYGFSKASDPEFDFHERIRIALSEVAVDVKMRKVRLVAPGKWMLCA 600
Query: 584 SFVLPESVAFARRS 597
SF+LP++VAF+R++
Sbjct: 601 SFILPKNVAFSRKN 614
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Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|F6VSS6|TRM5_XENTR tRNA (guanine(37)-N1)-methyltransferase OS=Xenopus tropicalis GN=trmt5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 202/351 (57%), Gaps = 18/351 (5%)
Query: 257 RLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEAL 316
+L+LLD V K+++ F E+ VL +Q + P + + +LT Y+ + EIL A+
Sbjct: 125 KLVLLDPYKV-KSIDSFDESDHVLFKQ---FDVNPQVSQYELQLT--YENFKCEEILRAV 178
Query: 317 LPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYR 376
LPKG + S F VGHIAH+NLR+ P+K +I +V+LDKN P I +VVNK + I + YR
Sbjct: 179 LPKGQDVTSGFSRVGHIAHMNLRDHQLPYKNVIGQVILDKN-PGITSVVNKTNTIDSTYR 237
Query: 377 TMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAG 436
Q+EVLAG +++T + ++++ F +YWN +L TE R++ +DV+ DVFAG
Sbjct: 238 NFQMEVLAGEENMITKVKENYVTYEFDFSKVYWNPRLGTEHNRIIGFLKARDVLFDVFAG 297
Query: 437 VGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID------- 489
VGP +PAAK VYANDLNP + +L N LNK+EK+++ FN DGR FI
Sbjct: 298 VGPFAVPAAKKNCTVYANDLNPESYKWLLHNCKLNKVEKRVQAFNTDGRDFIKTTIKKEL 357
Query: 490 ---AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546
A S + + MNLP A EFLDAF+ + + P ++ F P IH Y FSK D
Sbjct: 358 LKYADMPSAEEKPSLHIAMNLPALAVEFLDAFKNLLEEEPCNS-FILPTIHCYSFSKDDD 416
Query: 547 PEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRS 597
P D R L + M VR VAP K M+C SF LP SV F R S
Sbjct: 417 PLQDVKARAESFLGTTLEDCSMHLVRNVAPNKEMVCISFKLPSSVLFQRLS 467
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Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|F4NUJ6|TRM5_BATDJ tRNA (guanine(37)-N1)-methyltransferase OS=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) GN=TRM5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 214/397 (53%), Gaps = 72/397 (18%)
Query: 250 EKWRGSTRLLLLDEELVDKNVEEFPEAIK-VLLEQDTRENTTPTLELVKCRLTLFYDYWL 308
+KWR LLLLD + + + P +K L+ + + LVK + L YDYW
Sbjct: 64 KKWR----LLLLDPSMEASEINDLPNPLKEFALKHEAK--------LVKHTIELKYDYWT 111
Query: 309 MNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKI 368
+++L ++LP M P AFETVGHIAHLNLR+ +QPFK++I +V+LDK+ I+TVVNK+
Sbjct: 112 SDQVLRSILPDEMETPGAFETVGHIAHLNLRDRYQPFKHIIGQVILDKSS-HIKTVVNKL 170
Query: 369 DAIHNDYRTMQLEVLAGNNSLVTML----LFHHLSLFRCFDTIYWNSKLATERQRLLSGF 424
D I + +R Q+E+LAG N + L F H F +YWNS+L E R++ F
Sbjct: 171 DNIDHTFRFFQMEILAGINDMNAKLKEGGCFFHFD----FSKVYWNSRLQGEHDRIIKLF 226
Query: 425 NFKDVVCDVFAGVGPICIPAAKIVKR--VYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482
D++CDVFAGVGP +PAAK KR V+ANDLNP + YL N LNKLE +I FNM
Sbjct: 227 GQNDLICDVFAGVGPFALPAAK-HKRCVVFANDLNPQSFKYLMENIKLNKLETRILPFNM 285
Query: 483 DGRRFID------------------------------------AMFASQKA----HKITQ 502
DGR+FI A Q A
Sbjct: 286 DGRQFIKQSLEDLNNPAIWNKITKQKPTSNDKKRNRKVESPTVAPLTDQPAISGIRHFKH 345
Query: 503 VVMNLPNDATEFLDAFRGIY---RDRPEDAKFTFPKIHLYGFSKARDPEFDFHERI-RIA 558
VMNLP A EFLDAF G+Y RD D+ P IH + FS A+D + D ER+ R+
Sbjct: 346 YVMNLPATAIEFLDAFHGLYSGMRDVIMDSD--LPTIHCHCFSNAKDVKADVIERVERVI 403
Query: 559 LVEVAVNVEM-RRVRLVAPGKWMLCASFVLPESVAFA 594
+ + N+ M VR VAP K MLC SF LP ++AFA
Sbjct: 404 GMPLGSNLIMVHSVRTVAPNKDMLCISFRLPSALAFA 440
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (taxid: 684364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|B8A5G9|TRM5_DANRE tRNA (guanine(37)-N1)-methyltransferase OS=Danio rerio GN=trmt5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 199/350 (56%), Gaps = 27/350 (7%)
Query: 257 RLLLLDEELV---DKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEIL 313
RLLLLD + D + EA+K + P E+ L L Y+ + EIL
Sbjct: 120 RLLLLDPNSITSSDSFGSDEAEALKAY--------SVPQ-EIQSYELKLTYENFKSEEIL 170
Query: 314 EALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHN 373
A+LP+G + S F VGHIAH+NLRE P++ LI +V++DKN P I VVNK + I +
Sbjct: 171 RAVLPEGQGVTSGFSRVGHIAHMNLREHQLPYRKLIGQVIIDKN-PGITCVVNKTNTIDS 229
Query: 374 DYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDV 433
YR Q+EVLAG +++V + + + F +YWN +L+TE +R++S + D V DV
Sbjct: 230 TYRNFQMEVLAGESNMVAKVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRGDTVVDV 289
Query: 434 FAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA--- 490
FAGVGP IPAA+ V ANDLNP + +L+ N+ LNK+++KI N+DGR FI
Sbjct: 290 FAGVGPFAIPAARRGCAVLANDLNPESFRWLQHNAKLNKVDQKITTSNLDGRDFIRGPVR 349
Query: 491 ------MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544
M SQK H VVMNLP A EFLDAF+G+ P+ + P++H YGFSK
Sbjct: 350 ERLPALMKGSQKIH----VVMNLPALALEFLDAFKGLLDPEPDQSLSNLPQVHCYGFSKE 405
Query: 545 RDPEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAF 593
DP+ D ER +L + + VR VAP K M+C SF LP V +
Sbjct: 406 NDPQRDVVERAEASLKTNLQGQCSVHLVRNVAPNKEMMCVSFTLPRGVLY 455
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|D0NLC2|TRM5_PHYIT tRNA (guanine(37)-N1)-methyltransferase OS=Phytophthora infestans (strain T30-4) GN=PITG_12867 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 206/344 (59%), Gaps = 17/344 (4%)
Query: 254 GSTRLLLLDEELVD-KNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEI 312
S++L+LL+ ++ D + ++ E + L++++ L V + L Y Y+ ++++
Sbjct: 60 SSSKLILLNSKVKDMETLQPLNEDLVAFLKEES-------LAFVSHAIELDYSYFAVDQV 112
Query: 313 LEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIH 372
L LLPKGM IPS+FETVGHIAHLNLR+ PFK +I +V+LDKN +I+TVVNK D I
Sbjct: 113 LSELLPKGMDIPSSFETVGHIAHLNLRDNQLPFKNVIGQVILDKNA-QIRTVVNKTDNIE 171
Query: 373 NDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCD 432
+RT +EVLAG++ + + S + +YWNS+L E R++ DVVCD
Sbjct: 172 TKFRTFPMEVLAGDDDMEVEVHESKASFRFNYAEVYWNSRLQQEHLRIIRQIKPHDVVCD 231
Query: 433 VFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492
+ G+GP +P A +VYANDLNP + YL+ N LNK+EK + +N+DGR F+ +
Sbjct: 232 MMCGIGPFAVPVALNGSKVYANDLNPRSYHYLKENIALNKVEKLVTAYNLDGRDFLAKLL 291
Query: 493 ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFH 552
+ +K + TQV+MNLP A EFLDAF G + + + P +H Y FS A D + D
Sbjct: 292 SEKK--QFTQVLMNLPAIALEFLDAFPGQF----DHWEGELPFVHCYCFSNADDVKQDVK 345
Query: 553 ERI-RIALVEV-AVNVEMRRVRLVAPGKWMLCASFVLPESVAFA 594
+R +I E+ VR VAP K M+C SF LPES+AF+
Sbjct: 346 QRAEKIMGGELDPERTSFHLVRDVAPKKVMVCISFQLPESIAFS 389
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Phytophthora infestans (strain T30-4) (taxid: 403677) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|Q8TFG7|TRM5_SCHPO tRNA (guanine(37)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 190/349 (54%), Gaps = 52/349 (14%)
Query: 292 TLELVKCRLTLFYDYWLMNEILEALLPKGMI--IPSAFETVGHIAHLNLREEHQPFKYLI 349
+ELV +LTL YDYW ++IL+A+LP G PS F VGHIAH+NLREE P+KY+I
Sbjct: 105 NIELVPFQLTLDYDYWRADDILDAILPPGEKEDHPSGFTAVGHIAHMNLREEWLPYKYII 164
Query: 350 AKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYW 409
KV+LDKN P I+TVVNK D I +RT Q+EVLAG + + + F +YW
Sbjct: 165 GKVILDKN-PSIETVVNKTDTIDTKFRTFQMEVLAGKDDFIVTQSESNCKFRFDFSKVYW 223
Query: 410 NSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV 469
NS+L+TE RL+ F D VCDV AGVGP PA K V+ANDLNPY+ + L N
Sbjct: 224 NSRLSTEHDRLIQQFQPGDAVCDVMAGVGPFACPAGKKNVIVFANDLNPYSYESLVENIF 283
Query: 470 LNKLEKKIEVFNMDGRRFIDA----------------MFASQK-AHKI------------ 500
LNK+ ++ FN DGR FI + +F +K A K+
Sbjct: 284 LNKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIP 343
Query: 501 -----TQVVMNLPNDATEFLDAFRGIY-------RDRPEDAKFTFPKIHLYGFSKARDPE 548
+ VMNLP A EFLDAF+G Y +DR + PK+H++ F + DPE
Sbjct: 344 IPPVFSHYVMNLPGSAIEFLDAFKGCYYGLEYLFKDR------SLPKVHVHCFCRFPDPE 397
Query: 549 FDFHERIRIALVE--VAVNVEMRRVRLVAPGKWMLCASFVLPESVAFAR 595
D RI +L V+ VR VAP K M C +F LP S+ FA+
Sbjct: 398 EDLINRIYASLGYRFSPEEVDFYYVRKVAPNKDMYCCTFTLPGSIIFAK 446
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|Q9D0C4|TRM5_MOUSE tRNA (guanine(37)-N1)-methyltransferase OS=Mus musculus GN=Trmt5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 182/314 (57%), Gaps = 12/314 (3%)
Query: 294 ELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVV 353
+L + L L Y+ + EIL+A+LP+G + S F VGHIAHLNLR+ PFK+LI +V+
Sbjct: 160 QLSQYNLELTYENFKSEEILKAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKHLIGQVM 219
Query: 354 LDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKL 413
+DKN P I + VNK I N YR Q+EVL G +++T + ++ + F +YWN +L
Sbjct: 220 VDKN-PGITSAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTYEFDFSKVYWNPRL 278
Query: 414 ATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 473
+TE R+ N DV+ DVFAGVGP IPAA+ V+ANDLNP + +L N LNK+
Sbjct: 279 STEHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESHKWLLHNCKLNKV 338
Query: 474 EKKIEVFNMDGRRFIDA---------MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRD 524
++K++VFNMDG+ FI + S +A +VMNLP A EFL FR +
Sbjct: 339 DQKVKVFNMDGKDFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKAIEFLSVFRSLLDG 398
Query: 525 RPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCA 583
+P + P +H Y FSK DP D ++ L V + + + VR VAP K MLC
Sbjct: 399 QPCSTEL-LPTVHCYCFSKDSDPAKDVRQQAEAVLGVSLETSSSVHLVRNVAPNKEMLCI 457
Query: 584 SFVLPESVAFARRS 597
+F +P + + +S
Sbjct: 458 TFQIPTATLYRNQS 471
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|Q3MHN8|TRM5_BOVIN tRNA (guanine(37)-N1)-methyltransferase OS=Bos taurus GN=TRMT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 205/358 (57%), Gaps = 21/358 (5%)
Query: 254 GSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEIL 313
G RL++LD + V+ F + +L+Q N P ++ K L L Y+ + EIL
Sbjct: 131 GEGRLIMLDPYKM-FTVDSFEKEELSILKQ---LNVNP--QISKYNLDLTYENFKSEEIL 184
Query: 314 EALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHN 373
A+LP+G + S F VGHIAHLNLR+ P+K+LI +V++DKN P I + VNKI+ I N
Sbjct: 185 RAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPYKHLIGQVMIDKN-PGITSAVNKINNIDN 243
Query: 374 DYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDV 433
YR ++EVL+G +++T + ++ + F +YWN +L+TE R+ DV+ DV
Sbjct: 244 TYRNFEMEVLSGEENMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDV 303
Query: 434 FAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID---- 489
FAGVGP IPAAK V+ANDLNP + +L N LNK+++K++VFN+DGR F+
Sbjct: 304 FAGVGPFAIPAAKKKCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGRDFLQGPVR 363
Query: 490 -------AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542
+ ++ H + +VMNLP A EFL AF+ + +P ++ P +H Y FS
Sbjct: 364 EELMQQLGPLSKERKHSV-HIVMNLPAKAIEFLSAFKALLEGQPCGSEL-LPIVHCYSFS 421
Query: 543 KARDPEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRSPN 599
K +P D +R L + + + VR VAP K MLC +F +P ++ + ++ N
Sbjct: 422 KDANPAKDVQQRAATVLGISLEAYSSVHLVRNVAPNKEMLCITFRIPAAILYKNQTVN 479
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
| >sp|Q32P41|TRM5_HUMAN tRNA (guanine(37)-N1)-methyltransferase OS=Homo sapiens GN=TRMT5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 206/354 (58%), Gaps = 18/354 (5%)
Query: 256 TRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEA 315
+RL++LD + + + F +A +LEQ N +P ++ K L L Y+++ EIL A
Sbjct: 135 SRLIMLDPYKIFTH-DSFEKAELSVLEQ---LNVSP--QISKYNLELTYEHFKSEEILRA 188
Query: 316 LLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDY 375
+LP+G + S F +GHIAHLNLR+ FK+LI +V++DKN P I + VNKI+ I N Y
Sbjct: 189 VLPEGQDVTSGFSRIGHIAHLNLRDHQLSFKHLIGQVMIDKN-PGITSAVNKINNIDNMY 247
Query: 376 RTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFA 435
R Q+EVL+G +++T + ++ + F +YWN +L+TE R+ DV+ DVFA
Sbjct: 248 RNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFA 307
Query: 436 GVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA----- 490
GVGP IP AK V+ANDLNP + +L N LNK+++K++VFN+DG+ F+
Sbjct: 308 GVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEE 367
Query: 491 ----MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546
+ S++ VVMNLP A EFL AF+ + +P ++F P +H Y FSK +
Sbjct: 368 LMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEF-LPIVHCYSFSKDAN 426
Query: 547 PEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRSPN 599
P D +R L + + + VR VAP K MLC +F +P SV + ++ N
Sbjct: 427 PAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN 480
|
Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| 255569649 | 641 | conserved hypothetical protein [Ricinus | 0.968 | 0.906 | 0.598 | 0.0 | |
| 449458211 | 626 | PREDICTED: tRNA (guanine(37)-N1)-methylt | 0.961 | 0.921 | 0.621 | 0.0 | |
| 225461279 | 608 | PREDICTED: tRNA (guanine-N(1)-)-methyltr | 0.963 | 0.950 | 0.611 | 0.0 | |
| 297799252 | 617 | hypothetical protein ARALYDRAFT_492065 [ | 0.945 | 0.918 | 0.574 | 0.0 | |
| 42567181 | 619 | Met-10+ like family protein [Arabidopsis | 0.96 | 0.930 | 0.581 | 0.0 | |
| 356542234 | 594 | PREDICTED: tRNA (guanine-N(1)-)-methyltr | 0.928 | 0.937 | 0.593 | 0.0 | |
| 356549789 | 601 | PREDICTED: tRNA (guanine-N(1)-)-methyltr | 0.9 | 0.898 | 0.601 | 0.0 | |
| 326515942 | 576 | predicted protein [Hordeum vulgare subsp | 0.873 | 0.909 | 0.573 | 1e-167 | |
| 357132197 | 575 | PREDICTED: tRNA (guanine-N(1)-)-methyltr | 0.81 | 0.845 | 0.6 | 1e-163 | |
| 55297221 | 586 | putative tRNA-(N1G37) methyltransferase | 0.836 | 0.856 | 0.571 | 1e-161 |
| >gi|255569649|ref|XP_002525790.1| conserved hypothetical protein [Ricinus communis] gi|223534940|gb|EEF36626.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/637 (59%), Positives = 452/637 (70%), Gaps = 56/637 (8%)
Query: 12 CTKLLLRPNPLPSVIFSPP-IHSLFAKPKF-IAPVTLSTFSTAAISAASGNHQSSLPYGP 69
TK LRPN P I SP F PK I+ + + +A + S + YGP
Sbjct: 2 VTKFFLRPNSFPLTIISPARTTQFFLFPKLSISKLPFISLFSATPAHPSTKSPEAFLYGP 61
Query: 70 SLFKGKTP------------------------PTLKQQQDQQENETK-------AFIDET 98
SL KG P P L +Q + E K + IDE
Sbjct: 62 SLLKGNNPFQYAQQQQKLQLQQEQCYQSQLGAPKLLNGDEQDKKEEKEIDFHDDSVIDEE 121
Query: 99 HFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDG 158
+F R+FDIAALRVPAK+C+ALESRLRGHLLNWPR+RNIARV GDE++ + V LLG + G
Sbjct: 122 NFIRVFDIAALRVPAKNCFALESRLRGHLLNWPRIRNIARVPGDEVDEEIVSLLGESKVG 181
Query: 159 SHGGNEDFSGVV--------------GDEVNSVLFREELVKSFDARGFVKFRNLARISRL 204
+G +D G + G+E++ VL+RE L K F++RGF KFRNLA+ISR
Sbjct: 182 -NGSRDDEEGKLDALDRRIYGRAEGDGEELSPVLYRERLAKEFNSRGFFKFRNLAKISRP 240
Query: 205 RRKKRKEKK-EGKEG----NGRKGELYVVEVVE--EERKEMSGLLGDEFRGGEKWRGSTR 257
++KRKE + EG E NG K + VVEV+E +E + GLLGD+F+G +KWRGSTR
Sbjct: 241 PKRKRKEGEVEGGEKMRKKNG-KDQFAVVEVMEADDEEGDWKGLLGDDFKGSKKWRGSTR 299
Query: 258 LLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALL 317
LLLLDE DK +E+ P AIK L++ +EN+T T ELV+C+LTL Y+YW MNE+LEALL
Sbjct: 300 LLLLDERYADKRMEDLPRAIKAALQEAMKENSTSTFELVRCKLTLSYNYWQMNEVLEALL 359
Query: 318 PKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRT 377
P+G IIPSAFETVGHIAHLNLR EH P+K LIAKVVLDKNKPKIQTVVNKIDAI NDYRT
Sbjct: 360 PEGAIIPSAFETVGHIAHLNLRNEHMPYKKLIAKVVLDKNKPKIQTVVNKIDAIQNDYRT 419
Query: 378 MQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGV 437
MQLEVLAGN+SLVTM++ + L +YWNS+LATERQRLL GF DVVCDVF+GV
Sbjct: 420 MQLEVLAGNHSLVTMVVENGLRFHVDLAKVYWNSRLATERQRLLDGFTRNDVVCDVFSGV 479
Query: 438 GPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497
GPI + AA IVKRVYANDLNP AVDYLERNSVLNKLE+K++VFNMDGRRFIDAMF+S KA
Sbjct: 480 GPIALSAATIVKRVYANDLNPCAVDYLERNSVLNKLERKVKVFNMDGRRFIDAMFSSDKA 539
Query: 498 HKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRI 557
ITQVVMNLPNDA E+LDAFRG+++D P+ + P IH+YGFSKA DPEF+FHERIRI
Sbjct: 540 QTITQVVMNLPNDAAEYLDAFRGLFKDNPKKREVALPMIHVYGFSKAHDPEFEFHERIRI 599
Query: 558 ALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFA 594
AL E AV+VEMRRVRLVAPGKWMLCASF LPESVAFA
Sbjct: 600 ALAEAAVHVEMRRVRLVAPGKWMLCASFRLPESVAFA 636
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458211|ref|XP_004146841.1| PREDICTED: tRNA (guanine(37)-N1)-methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/623 (62%), Positives = 462/623 (74%), Gaps = 46/623 (7%)
Query: 13 TKLLLRPNPLPSVIFSPPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQSSLPYGPSLF 72
TKL LRP LP FSP +F + S FS+ + + S SL YGPSL
Sbjct: 3 TKLFLRPQSLPLTAFSPKF--IFPHKNSLPICFTSPFSSTTVHSQSQFSHQSLSYGPSLC 60
Query: 73 KG--------------KTPPTLK--------QQQDQQENETKAFIDETHFTRIFDIAALR 110
KG +PP LK +Q QENE A +DE FTRIFD+AALR
Sbjct: 61 KGIHPFPSVSRQSPIDHSPPLLKTLTGNLEREQLQDQENEG-AILDEDAFTRIFDVAALR 119
Query: 111 VPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLG----NNNDGSHGGNEDF 166
VP++ C+ LE+RLRGHLLNWPR+RNIARV GDE+E + ++L+G +N+D G + D
Sbjct: 120 VPSRGCFELENRLRGHLLNWPRIRNIARVPGDEVEAEMLELVGEQNWSNSDDGDGTSIDL 179
Query: 167 --------SGVVGDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEG 218
+ G+ ++ VL+RE+LVK+FD++G+V FR+LA++SRL+R+K K K+EG++
Sbjct: 180 LHRRIYGKAEGDGEPLSPVLYREKLVKTFDSKGYVNFRHLAKMSRLKRRKEK-KEEGRDE 238
Query: 219 NGR---KGELYVVEVVEEERK---EMSGLLGDEFRGGEKWRGSTRLLLLDEELVDKNVEE 272
R K E +VEVVE E +M GLLGD F+GG KWRGSTRLLLLDE+ K VEE
Sbjct: 239 KMRRMGKSEFAIVEVVESEELEMDDMKGLLGDGFKGG-KWRGSTRLLLLDEQYAAKGVEE 297
Query: 273 FPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGH 332
PEAIK LL+ DT+E PT+ELV+CRLTLFYDYW MNE+L+ALLPK MIIPSAFETVGH
Sbjct: 298 LPEAIKALLKGDTQERMKPTIELVRCRLTLFYDYWQMNEVLQALLPKDMIIPSAFETVGH 357
Query: 333 IAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTM 392
IAHLNLR+EH +K LIAKV+LDKNKPKIQTVVNK DAI NDYRTMQLEVLAGN+SLVT
Sbjct: 358 IAHLNLRDEHLSYKKLIAKVILDKNKPKIQTVVNKSDAISNDYRTMQLEVLAGNHSLVTT 417
Query: 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVY 452
++ + L T+YWNS+LATERQRLLS F DV+CDVFAGVGPI I AA+IVK+VY
Sbjct: 418 VVENGLRFHLDLATVYWNSRLATERQRLLSVFTCNDVICDVFAGVGPISISAARIVKKVY 477
Query: 453 ANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT 512
ANDLNPYAV+YLERNSV NKLE+KIEVFNM+GRRFI AMFAS+KA KITQVVMNLPNDA
Sbjct: 478 ANDLNPYAVEYLERNSVANKLERKIEVFNMEGRRFIRAMFASEKAPKITQVVMNLPNDAA 537
Query: 513 EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR 572
E+LDAF+GI RDR D +FT P IH+YGFSKARDPEFDFHERIRIA+ EVAV+V +RRVR
Sbjct: 538 EYLDAFKGILRDR-SDKEFTLPIIHVYGFSKARDPEFDFHERIRIAITEVAVDVNVRRVR 596
Query: 573 LVAPGKWMLCASFVLPESVAFAR 595
LVAPGKWMLCASF LP SVA ++
Sbjct: 597 LVAPGKWMLCASFRLPRSVALSK 619
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461279|ref|XP_002284299.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Vitis vinifera] gi|363805566|sp|F6H2F8.1|TRM51_VITVI RecName: Full=tRNA (guanine(37)-N1)-methyltransferase 1; AltName: Full=M1G-methyltransferase 1; AltName: Full=tRNA [GM37] methyltransferase 1; AltName: Full=tRNA methyltransferase 5 homolog 1 | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/608 (61%), Positives = 452/608 (74%), Gaps = 30/608 (4%)
Query: 12 CTKLLLRPNPLPSVIFSPPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQS---SLPYG 68
TKL LRP+ L + S IH LF K P+TL ST A + Q+ +L YG
Sbjct: 2 VTKLFLRPHSLSFTLLSG-IH-LFPKTSLSKPITLCLLSTTATTPILTLTQTLDPNLSYG 59
Query: 69 PSLFKGKTPPTLKQQQDQ----QENETKAFIDETHFTRIFDIAALRVPAKDCYALESRLR 124
PSL KG P L Q Q E + D+ FTR+F++ A+RVP+KDC+ALE+RLR
Sbjct: 60 PSLHKGTKP--LNHQNHQLIAATPGEEECVFDKEAFTRVFNLTAIRVPSKDCFALENRLR 117
Query: 125 GHLLNWPRVRNIARVLGDEIETQFVKLLG---NNNDGSHGGNEDFSGVV----------G 171
GHLLNWPR+RN+ARV GDE+E VKLLG N++DGS DF + G
Sbjct: 118 GHLLNWPRIRNVARVPGDEVEDGLVKLLGEKRNSSDGSESEG-DFDSLNRRIYGKAEGDG 176
Query: 172 DEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGNGRKGE----LYV 227
+ ++ VL+R+ L K+FD++GF FRNLA++SR ++KKR++++E EG R G+ +
Sbjct: 177 EILSPVLYRDTLAKTFDSQGFANFRNLAKLSRPKKKKRRKEEERSEGKKRTGKNEFAMVE 236
Query: 228 VEVVEEERKEMSGLLGDEFRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRE 287
V EE +++ GLLG+EF+ ++WRGSTRLLLLDE DK VEE PEAIK +L++DT +
Sbjct: 237 VVEDGEEGEDLRGLLGEEFKR-KRWRGSTRLLLLDERYADKGVEELPEAIKAVLKEDTGQ 295
Query: 288 NTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKY 347
+ T T ELVKC+LTLFY+YW MNEILEALLP+GMI+PSAFE VGHIAHLNLR+EH P+K
Sbjct: 296 SMTSTFELVKCKLTLFYNYWQMNEILEALLPEGMIVPSAFEMVGHIAHLNLRDEHLPYKK 355
Query: 348 LIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTI 407
LIAKVVLDKNKPKIQTVVNK DAIHNDYRTMQLEVLAGN SLVT ++ + + T+
Sbjct: 356 LIAKVVLDKNKPKIQTVVNKTDAIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATV 415
Query: 408 YWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERN 467
YWNS+LATERQRLL+ F DVVCDVF+GVGPI I AAK VKRVYANDLNPYA++YLE N
Sbjct: 416 YWNSRLATERQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLESN 475
Query: 468 SVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPE 527
SVLNKLE+KI+VFNMDGRRFI+AMF S KA ITQVVMNLPNDA EFLDAFRGI+R +
Sbjct: 476 SVLNKLERKIKVFNMDGRRFINAMFTSDKAESITQVVMNLPNDAAEFLDAFRGIFRKKSR 535
Query: 528 DAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVL 587
D + P IH+YGFSKA+DPEFDFH+RIRIAL EVAV+VEM RVRLVAPGKWML ASF+L
Sbjct: 536 DKQLKLPMIHVYGFSKAQDPEFDFHQRIRIALSEVAVDVEMHRVRLVAPGKWMLRASFIL 595
Query: 588 PESVAFAR 595
P+SV FA+
Sbjct: 596 PKSVVFAK 603
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799252|ref|XP_002867510.1| hypothetical protein ARALYDRAFT_492065 [Arabidopsis lyrata subsp. lyrata] gi|297313346|gb|EFH43769.1| hypothetical protein ARALYDRAFT_492065 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/621 (57%), Positives = 454/621 (73%), Gaps = 54/621 (8%)
Query: 16 LLRPNPLPSVIFSPP----IHSLFAKPKFIAPVTLSTFSTAAISAASGNHQSSLPYGPSL 71
L R N LP +FS IH + KPK + FS+ S +++PYGPSL
Sbjct: 7 LFRANSLPFPVFSSYSARFIHKPYPKPKTL---IFCVFSSNLSS-------TTVPYGPSL 56
Query: 72 FKGKTP-------PTLKQQQDQQEN---------ETKAFIDETHFTRIFDIAALRVPAKD 115
KGK P ++ + +D + ET ++E FTR+F+I+A+RVPAKD
Sbjct: 57 LKGKKPLVDDLRLASIGRDRDAHRSKIGDLDESIETGVLLNEDEFTRVFEISAIRVPAKD 116
Query: 116 CYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGGNEDFSGVV----- 170
C+ALE+RLRGHLLNWPR+RNIARV GDEIE VKLLG + +E+ +V
Sbjct: 117 CFALENRLRGHLLNWPRIRNIARVPGDEIEEDVVKLLGRETE-----DEEEDSIVDSVDR 171
Query: 171 ---------GDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEK---KEGKEG 218
G+ ++SVL R++L ++F++ G++KFRNLA+ISR +RK++ EK ++ KE
Sbjct: 172 RIRGKAEGDGERLSSVLHRDKLARTFNSTGYLKFRNLAKISRPKRKRKTEKATERKEKEN 231
Query: 219 NGRKGELYVVEVVEEE--RKEMSGLLGDEFRGGEKWRGSTRLLLLDEELVDKNVEEFPEA 276
R+ E+ VVEVV+ ++ GLLG+ + +WRGSTRLLLLDE+ + VE+ PEA
Sbjct: 232 GSRRNEMAVVEVVDARGGAEDFEGLLGEGYGSRGRWRGSTRLLLLDEKYSGEQVEDLPEA 291
Query: 277 IKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHL 336
IKVL + + + + ELVKCR+TLFYDYW M EILEA+LPKG+++PSAFE VGHIAHL
Sbjct: 292 IKVLFAEAKITDVSLSFELVKCRVTLFYDYWPMIEILEAVLPKGIVVPSAFEMVGHIAHL 351
Query: 337 NLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFH 396
NLR+EH P+K LIAKVVLDKN+PKIQTVVNKID IHND+RTMQLEVLAGN+SLVT+++ +
Sbjct: 352 NLRDEHLPYKRLIAKVVLDKNQPKIQTVVNKIDPIHNDFRTMQLEVLAGNHSLVTLVVEN 411
Query: 397 HLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDL 456
L +YWNSKL TERQRLL GF+ DVVCDVFAGVGPI + AA+IVKRVYANDL
Sbjct: 412 GLRFHVDLARVYWNSKLGTERQRLLLGFDQNDVVCDVFAGVGPIALAAARIVKRVYANDL 471
Query: 457 NPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLD 516
NP+AV+++E+NSV+NKLEK+IE+FNMDGRRFI AMF+S+K K+TQVVMNLP DA E LD
Sbjct: 472 NPHAVEFMEQNSVVNKLEKRIEIFNMDGRRFIKAMFSSEKGRKVTQVVMNLPKDAAESLD 531
Query: 517 AFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAP 576
AFRG+Y DRP D +FP IH+YGFSKA DPEFDFHERIRIAL EVAV+V+MR+VRLVAP
Sbjct: 532 AFRGVYNDRPRDEGLSFPTIHVYGFSKAPDPEFDFHERIRIALSEVAVDVKMRKVRLVAP 591
Query: 577 GKWMLCASFVLPESVAFARRS 597
GKWMLCASF+LP+SVAF+R++
Sbjct: 592 GKWMLCASFILPKSVAFSRKN 612
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567181|ref|NP_194464.3| Met-10+ like family protein [Arabidopsis thaliana] gi|75127148|sp|Q6NQ64.1|TRM52_ARATH RecName: Full=tRNA (guanine(37)-N1)-methyltransferase 2; AltName: Full=M1G-methyltransferase 2; AltName: Full=tRNA [GM37] methyltransferase 2; AltName: Full=tRNA methyltransferase 5 homolog 2; Flags: Precursor gi|37202010|gb|AAQ89620.1| At4g27340 [Arabidopsis thaliana] gi|110742288|dbj|BAE99069.1| hypothetical protein [Arabidopsis thaliana] gi|332659926|gb|AEE85326.1| Met-10+ like family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/614 (58%), Positives = 448/614 (72%), Gaps = 38/614 (6%)
Query: 16 LLRPNPLPSVIFSPPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQSSLPYGPSLFKGK 75
L R N LP + S KP + P TL F + + +S ++ PYGPSL KGK
Sbjct: 7 LFRANSLPFPVISSYSARFILKP-YPKPKTL-IFCVFSSNLSS----TTFPYGPSLLKGK 60
Query: 76 TP-------PTLKQQQDQQENETKAF---------IDETHFTRIFDIAALRVPAKDCYAL 119
P ++ + +D + F ++E FTR+F+I+A+RVPAKDC+AL
Sbjct: 61 KPVLDDIRLASIGRDRDAHRGKIGEFDESIEKDVLLNEDEFTRVFEISAIRVPAKDCFAL 120
Query: 120 ESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGG--------NEDFSGVV- 170
E+RLRGHLLNWPR+RNIARV GDEIE VKLLG D N G
Sbjct: 121 ENRLRGHLLNWPRIRNIARVPGDEIEEDVVKLLGRETDEEEEDEDSVVDSVNRRIRGKAE 180
Query: 171 --GDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEK-KEGKEGN--GRKGEL 225
G+ ++SVL R++L ++F++ G++KFRNLA+ISR +RK++ E+ +EGKE R+ E+
Sbjct: 181 GDGERLSSVLHRDKLARTFNSTGYLKFRNLAKISRPKRKRKTERTREGKEKEIASRRNEM 240
Query: 226 YVVEVVEEE--RKEMSGLLGDEFRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQ 283
VVEVVE ++ GLLG+ + +WRGSTRLLLLDE+ + V++ PEAIKVL +
Sbjct: 241 AVVEVVETRGGEEDFEGLLGEGYGSRGRWRGSTRLLLLDEKYSGEEVQDLPEAIKVLFAE 300
Query: 284 DTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQ 343
+ + + ELVKCRLTLFYDYW M EILEA+LPKGMI+PSAFE VGHIAHLNLR+EH
Sbjct: 301 AKMADASLSFELVKCRLTLFYDYWPMIEILEAVLPKGMIVPSAFEMVGHIAHLNLRDEHL 360
Query: 344 PFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRC 403
P+K LIAKVVLDKN+PKIQTVVNKID IHND+RTMQLEVLAGN+SLVT+++ + L
Sbjct: 361 PYKRLIAKVVLDKNQPKIQTVVNKIDPIHNDFRTMQLEVLAGNHSLVTLVVENGLRFHVD 420
Query: 404 FDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDY 463
+YWNSKL TERQRLL GF+ DVVCDVFAGVGPI + AA+IVKRVYANDLNP+AV++
Sbjct: 421 LARVYWNSKLGTERQRLLLGFDQNDVVCDVFAGVGPIALAAARIVKRVYANDLNPHAVEF 480
Query: 464 LERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYR 523
+E+NSV+NKLEK+IE+FNMDGRRFI AMF+S+K K+TQVVMNLP DA E LDAFRG+Y
Sbjct: 481 MEQNSVVNKLEKRIEIFNMDGRRFIKAMFSSEKGQKVTQVVMNLPKDAAESLDAFRGVYN 540
Query: 524 DRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCA 583
DR D +FP IH+YGFSKA DPEFDFHERIRIAL EVAV+V+MR+VRLVAPGKWMLCA
Sbjct: 541 DRHRDEGLSFPTIHVYGFSKASDPEFDFHERIRIALSEVAVDVKMRKVRLVAPGKWMLCA 600
Query: 584 SFVLPESVAFARRS 597
SF+LP++VAF+R++
Sbjct: 601 SFILPKNVAFSRKN 614
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542234|ref|XP_003539574.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/593 (59%), Positives = 431/593 (72%), Gaps = 36/593 (6%)
Query: 31 IHSLFAKPKFI----APVTLSTFSTAAISAASGNHQSSLP---YGPSLFKGKTPPTLKQQ 83
I ++F KP+ + + + S A+ S + H S+ P YGPSL KG P+
Sbjct: 2 ISNVFLKPQVVGLLPSKLVFPHRSKASSSLSLPTHFSTAPLSSYGPSLHKGTPIPSQTLP 61
Query: 84 QDQQENETKAFIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDE 143
QD A + + FTR+F +AALR+P+ C ALE RLRGHLLNWPR+RNIARV GD+
Sbjct: 62 QDD------AVLCQEAFTRVFHLAALRLPSSQCSALEGRLRGHLLNWPRLRNIARVPGDD 115
Query: 144 IETQFVKLL---GNNNDGSHGGNEDFSGVV-------------GDEVNSVLFREELVKSF 187
++ LL GN N +E+ +V GD + VL+R+ L ++F
Sbjct: 116 LDPSLAPLLPQPGNANGDFDYDDEEERRLVSLQRRIHGKADGDGDVLGPVLYRDRLARTF 175
Query: 188 DARGFVKFRNLARISRLRRKKRKEKK-EGKE-----GNGRKGELYVVEVVEEERKEMSGL 241
+ GFVKFR+LA+ISR R KR+ K E E G R + VVE EE + L
Sbjct: 176 NTSGFVKFRHLAKISRPNRNKRRRKSREASEEVKPVGENRFAAVEVVEDEEEGSDGLRNL 235
Query: 242 LGDEFRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLT 301
LG+EF KWRGSTRLLLLDE + +EE PEAIK +L++ ++T TLELV+C+LT
Sbjct: 236 LGEEF-ARSKWRGSTRLLLLDERYAGRGMEELPEAIKAVLKEYAEKSTNLTLELVRCKLT 294
Query: 302 LFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKI 361
LFYDYW M E+LEALLP+GMIIPSAFETVGHIAHLNLR+EH P+K LIAKVVLDKNKP+I
Sbjct: 295 LFYDYWQMTEVLEALLPEGMIIPSAFETVGHIAHLNLRDEHLPYKRLIAKVVLDKNKPRI 354
Query: 362 QTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLL 421
QTVVNKID+I N+YRTMQLEVLAGN+SLVT ++ + L T+YW+S+L TERQRLL
Sbjct: 355 QTVVNKIDSIQNEYRTMQLEVLAGNHSLVTTVVENGLRFQVDLATVYWSSRLGTERQRLL 414
Query: 422 SGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481
SGF DVVCDVF+GVGP+ I AA+IVKRV+ANDLNPYAV+YLERN VLNKLE+KI+VFN
Sbjct: 415 SGFTRNDVVCDVFSGVGPLAISAARIVKRVFANDLNPYAVEYLERNCVLNKLERKIKVFN 474
Query: 482 MDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541
MDGRRFI AM+ S + ITQVVMNLP++A EFLDAFRGIY++RP+D ++T P IH+YGF
Sbjct: 475 MDGRRFIKAMYDSDISQSITQVVMNLPSEAAEFLDAFRGIYKNRPKDGEYTLPLIHVYGF 534
Query: 542 SKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFA 594
SKARDPEFDFHERIRIAL+EVAVNV+MRRVRLVAPGKWMLCASF+LP+SVAFA
Sbjct: 535 SKARDPEFDFHERIRIALLEVAVNVDMRRVRLVAPGKWMLCASFILPKSVAFA 587
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549789|ref|XP_003543273.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/587 (60%), Positives = 433/587 (73%), Gaps = 47/587 (8%)
Query: 36 AKPKFIAPVT--LSTFSTAAISAASGNHQSSLPYGPSLFKGKTPPTLKQQQDQQENETKA 93
KP P T +S FS+A +S+ YGPSL KG T P+ Q N+ A
Sbjct: 28 TKPSSSLPTTFFISHFSSAPLSS----------YGPSLHKGTTIPS------QSLND--A 69
Query: 94 FIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLG 153
+ E FTR+F +AALRVP+ +C ALESRLRGHLLNWPR+RNIARV GD+I+ LL
Sbjct: 70 VLCEEAFTRVFHLAALRVPSSECSALESRLRGHLLNWPRLRNIARVPGDDIDPTLAPLLP 129
Query: 154 NNNDGSHGGNED-------------FSGVV---GDEVNSVLFREELVKSFDARGFVKFRN 197
+G +E+ G GD ++ VL+R+ L ++F+ GFVKFR+
Sbjct: 130 QPGNGEFDFDENEVEERRLVSLQRRIHGKADGDGDVLSPVLYRDRLARTFNTSGFVKFRH 189
Query: 198 LARISRLRRKKRKEKKEGKE---GNGRKGE--LYVVEVVEEERKE-----MSGLLGDEFR 247
LA+ISR R KR+ K++ KE G R GE VEV+EEE + + LLG+EF
Sbjct: 190 LAKISRPNRNKRRRKRKEKESSEGVKRVGENGFAAVEVIEEEEEGEESGGLRNLLGEEF- 248
Query: 248 GGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYW 307
+KWRGSTRLLLLDE D+ EE PEA K +L++ ++T LELV+C+LTLFYDYW
Sbjct: 249 ARKKWRGSTRLLLLDERYADRGFEELPEATKAVLKEYAEKSTNLMLELVRCKLTLFYDYW 308
Query: 308 LMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNK 367
MNE+LE LLP+GMIIPSAFETVGHIAHLNLR+EH P+K+LIAKVVLDKNKP+IQTVVNK
Sbjct: 309 QMNEVLETLLPEGMIIPSAFETVGHIAHLNLRDEHLPYKWLIAKVVLDKNKPRIQTVVNK 368
Query: 368 IDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFK 427
ID I N+YRTMQLEVLAGN+SLVT ++ + + T+YW+S+L TERQRLLSGF
Sbjct: 369 IDTIQNEYRTMQLEVLAGNHSLVTTVVENGIHFQVDLATVYWSSRLGTERQRLLSGFTRN 428
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487
DVVCDVF+GVGP+ I AA+IVKRV+ANDLNPYAV+YLERN VLNKL++KI+VFNMDGRRF
Sbjct: 429 DVVCDVFSGVGPLAISAARIVKRVFANDLNPYAVEYLERNCVLNKLDRKIKVFNMDGRRF 488
Query: 488 IDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP 547
I +M+ S + ITQVVMNLP++A EFLDAFRGIY++RP+D ++T P IH+YGFSKARDP
Sbjct: 489 IKSMYDSDISQSITQVVMNLPSEAAEFLDAFRGIYKNRPKDGEYTLPLIHVYGFSKARDP 548
Query: 548 EFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFA 594
EFDFHERIRIAL+EVAVNV+MRRVRLVAPGKWMLCASF+LP+SVAFA
Sbjct: 549 EFDFHERIRIALLEVAVNVDMRRVRLVAPGKWMLCASFLLPKSVAFA 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326515942|dbj|BAJ87994.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518766|dbj|BAJ92544.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 321/560 (57%), Positives = 389/560 (69%), Gaps = 36/560 (6%)
Query: 47 STFSTAAIS-AASGNHQSSLPYGPSLFKGKTPPTLKQQQDQQENETKAFIDETHFTRIFD 105
S ++TA+ S AA P+GPSL +G+ PT Q + F+R FD
Sbjct: 36 SLYATASTSQAAPTAPLQPPPHGPSLRRGR--PTTGQPPEAP----------LSFSRTFD 83
Query: 106 IAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGGNED 165
+AALRVPA C +LE RLRGHLLNWPRVRNIAR+ D+ DG +
Sbjct: 84 LAALRVPAAACASLERRLRGHLLNWPRVRNIARLPNDD------------GDGFLSPPKS 131
Query: 166 FSGVVGDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKE----GKEGNGR 221
+V RE+L + F+ARGFV+F LA++SR + R+E K GKE
Sbjct: 132 PRSSSALPPTAVARREKLAREFNARGFVEFPILAKMSRPAGRTRRETKGRETGGKETKYE 191
Query: 222 KGELYVVEVVEE----ERKEMSGLLGDEFRGGEKWRGS-TRLLLLDEELVDKNVEEFPEA 276
K ++YVVEV+E+ + E GL+GDE G WRG TRLLLLDE + V+E PEA
Sbjct: 192 KDKVYVVEVLEQGGEDDEDEWKGLVGDEGFGKGAWRGEPTRLLLLDEGHAKRRVDELPEA 251
Query: 277 IKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHL 336
+KV+LE + + ELV+C++TLFY+YW MNE+LEALLP+G+IIP+ FETVGHIAHL
Sbjct: 252 VKVVLEHEAKHGGPFAYELVQCQITLFYNYWPMNEVLEALLPEGIIIPAGFETVGHIAHL 311
Query: 337 NLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFH 396
NLR+EH P+K LIA+VVLDKNKPKIQTVVNKIDAI NDYRTMQLE+LAG++SLVT ++
Sbjct: 312 NLRDEHLPYKTLIAQVVLDKNKPKIQTVVNKIDAIQNDYRTMQLEILAGHDSLVTTVIES 371
Query: 397 HLSLFRCFDTIYWNSKLATERQRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVKRVYAND 455
L T+YWNS+L+TERQRL+ S F DVVCDVF+GVGPI I AAK VK VYAND
Sbjct: 372 GLRFRVDLATVYWNSRLSTERQRLVNSIFQNSDVVCDVFSGVGPIAISAAKKVKYVYAND 431
Query: 456 LNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFL 515
LNP AV+YLERN VLNKLE+KIEVFNMD RRF++AMF+SQ H +TQVVMNLP DA EFL
Sbjct: 432 LNPAAVEYLERNIVLNKLERKIEVFNMDARRFVNAMFSSQHVHPVTQVVMNLPKDAAEFL 491
Query: 516 DAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVA 575
D FRGI R+R + PKIH+YGFSKA DPE+DFHERI +AL + VEM RVRLVA
Sbjct: 492 DVFRGILRNR-QTGHIAMPKIHVYGFSKAEDPEYDFHERINLALCDNVPGVEMHRVRLVA 550
Query: 576 PGKWMLCASFVLPESVAFAR 595
PGKWMLCASF LPESVA A+
Sbjct: 551 PGKWMLCASFTLPESVASAK 570
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357132197|ref|XP_003567718.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 306/510 (60%), Positives = 363/510 (71%), Gaps = 24/510 (4%)
Query: 100 FTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGS 159
R FD+AALRVPA C LE RLRGHLLNWPRVRNIAR DE G
Sbjct: 76 LARTFDLAALRVPAAACAPLERRLRGHLLNWPRVRNIARQPNDE------------GHGL 123
Query: 160 HGGNEDFSGVVGDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGN 219
S +V RE+L + F+ARGFV+F LA++SR + R+E K + N
Sbjct: 124 LPSPSGSSSSSALPPTAVARREKLAREFNARGFVEFPILAKMSRPAARTRRENKGTRSCN 183
Query: 220 ----GRKGELYVVEVV----EEERKEMSGLLGDEFRGGEKWRGS-TRLLLLDEELVDKNV 270
K ++YVVEV E++ E GL+G+E G WRG TRLLLLDE +++
Sbjct: 184 RETKHEKDKVYVVEVPRQGGEDDDDEWKGLVGEEGFGKGAWRGEPTRLLLLDESYAKRSL 243
Query: 271 EEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETV 330
+E PEAIKV+LE + ++ + ELV+C+LTLFYDYW MNE+LEALLP+GMIIP+ FETV
Sbjct: 244 DELPEAIKVVLENEAKQCGSSAYELVQCQLTLFYDYWPMNEVLEALLPEGMIIPAGFETV 303
Query: 331 GHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLV 390
GHIAHLNLR+EH P+K LIA+VVLDKNKPKIQTVVNK DAI NDYRTM+LEVLAG +SLV
Sbjct: 304 GHIAHLNLRDEHLPYKTLIAQVVLDKNKPKIQTVVNKTDAIQNDYRTMKLEVLAGCDSLV 363
Query: 391 TMLLFHHLSLFRCFDTIYWNSKLATERQRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK 449
T ++ L T+YWNS+LATERQRL+ S F DVVCDVF+GVGPI I AAK VK
Sbjct: 364 TTVIESGLRFKVDLATVYWNSRLATERQRLVNSVFQNSDVVCDVFSGVGPIAISAAKKVK 423
Query: 450 RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 509
VYANDLNP AV+YLERN VLNKLE+KIEVFNMD RRF+ AM++SQ H +TQ+VMNLP
Sbjct: 424 YVYANDLNPTAVEYLERNIVLNKLERKIEVFNMDARRFVAAMYSSQHVHPVTQLVMNLPK 483
Query: 510 DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMR 569
DA EFLD FRGI R+R + PKIH+YGFSKA DPE+DFHERI +AL + +EM
Sbjct: 484 DAAEFLDVFRGILRNRQTEQHVPMPKIHVYGFSKAEDPEYDFHERINLALCDNVACIEMH 543
Query: 570 RVRLVAPGKWMLCASFVLPESVAFARRSPN 599
RVRLVAPGKWMLCASF LPESVAFA+ PN
Sbjct: 544 RVRLVAPGKWMLCASFTLPESVAFAK--PN 571
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|55297221|dbj|BAD68985.1| putative tRNA-(N1G37) methyltransferase [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 311/544 (57%), Positives = 378/544 (69%), Gaps = 42/544 (7%)
Query: 67 YGPSLFKGKTPPTLKQQQDQQENETKAFIDETHFTRIFDIAALRVPAKDCYALESRLRGH 126
+GPSL +G+ P ET + F RIFD+AALRVPA C LE RLRGH
Sbjct: 64 HGPSLRRGRRLP----------GETDGLLS---FARIFDLAALRVPAAACAPLERRLRGH 110
Query: 127 LLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGGNEDFSGVVGDEVNSVLFREELVKS 186
LLNWPRVRN+ R GD+ F H S + +V RE+L +
Sbjct: 111 LLNWPRVRNVVRQPGDDGGLLF--------PVPHPSLATPSSLP----TAVARREKLARE 158
Query: 187 FDARGFVKFRNLARISRLRRKKRKEKKEGKEGNGR--------KGELYVVEVV----EEE 234
F+ARGFV+F NLA++SR +KRK KK+ EG G K ++YVVEV+ EE
Sbjct: 159 FNARGFVQFPNLAKMSRPPARKRKGKKD--EGGGEAAATARDTKDKVYVVEVIGERKEEH 216
Query: 235 RKEMSGLLGDEFRGGEKWRGS-TRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTL 293
E GL+G+E G WRG TRLLLLDE +K V++ PEA+KV+L+ +T ++ + +
Sbjct: 217 GDEWMGLVGEEGFGRITWRGGPTRLLLLDENYANKRVDDLPEAVKVVLDHETNKDGSSSY 276
Query: 294 ELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVV 353
ELV+C+LTLFY+YW MNEILE +LP+G+I+P+ FETVGHIAHLNLR++H P+K LIA+VV
Sbjct: 277 ELVQCQLTLFYNYWPMNEILEEILPEGIIVPTGFETVGHIAHLNLRDDHLPYKKLIAQVV 336
Query: 354 LDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKL 413
LDKNKPKIQTVVNKIDAI NDYRTMQLEVLAG +SLVT ++ L T+YWNS+L
Sbjct: 337 LDKNKPKIQTVVNKIDAIQNDYRTMQLEVLAGIDSLVTTVIESGLRFQVDLSTVYWNSRL 396
Query: 414 ATERQRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472
+TERQRL+ F DVVCDVF+GVGPI I AA+ VK VYANDLNP AV+YLERN VLNK
Sbjct: 397 STERQRLVDHVFKNSDVVCDVFSGVGPIAISAARKVKYVYANDLNPTAVEYLERNIVLNK 456
Query: 473 LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGI-YRDRPEDAKF 531
LE+KIEVFNMD RRFI ++++SQ H +TQVVMNLPNDA EFLD FRGI +
Sbjct: 457 LERKIEVFNMDARRFISSIYSSQHVHPVTQVVMNLPNDAAEFLDVFRGISWNHHLAVPSC 516
Query: 532 TFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESV 591
P IH+YGFSKA DPE+DFHERI + L E +VEM RVRLVAPGKWMLCASF LP SV
Sbjct: 517 VMPNIHVYGFSKAEDPEYDFHERINLTLGENVSDVEMHRVRLVAPGKWMLCASFTLPVSV 576
Query: 592 AFAR 595
AFA+
Sbjct: 577 AFAK 580
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| TAIR|locus:2131744 | 619 | AT4G27340 [Arabidopsis thalian | 0.846 | 0.820 | 0.604 | 7.9e-165 | |
| POMBASE|SPAPB18E9.01 | 450 | trm5 "tRNA (guanine) methyltra | 0.325 | 0.433 | 0.510 | 6.5e-68 | |
| TAIR|locus:2078386 | 468 | AT3G56120 [Arabidopsis thalian | 0.428 | 0.549 | 0.426 | 2.4e-66 | |
| ZFIN|ZDB-GENE-030131-5978 | 481 | trmt5 "TRM5 tRNA methyltransfe | 0.55 | 0.686 | 0.408 | 4.8e-62 | |
| UNIPROTKB|Q32P41 | 509 | TRMT5 "tRNA (guanine(37)-N1)-m | 0.56 | 0.660 | 0.389 | 4.2e-59 | |
| CGD|CAL0003706 | 467 | orf19.1305 [Candida albicans ( | 0.313 | 0.402 | 0.471 | 9.9e-58 | |
| UNIPROTKB|F1NFG8 | 500 | TRMT5 "Uncharacterized protein | 0.558 | 0.67 | 0.397 | 7.5e-57 | |
| UNIPROTKB|Q3MHN8 | 497 | TRMT5 "tRNA (guanine(37)-N1)-m | 0.561 | 0.678 | 0.379 | 9.6e-57 | |
| MGI|MGI:1923607 | 501 | Trmt5 "TRM5 tRNA methyltransfe | 0.555 | 0.664 | 0.393 | 3.3e-56 | |
| UNIPROTKB|I3L8T3 | 499 | TRMT5 "Uncharacterized protein | 0.558 | 0.671 | 0.376 | 6.8e-56 |
| TAIR|locus:2131744 AT4G27340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1604 (569.7 bits), Expect = 7.9e-165, P = 7.9e-165
Identities = 317/524 (60%), Positives = 391/524 (74%)
Query: 90 ETKAFIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFV 149
E ++E FTR+F+I+A+RVPAKDC+ALE+RLRGHLLNWPR+RNIARV GDEIE V
Sbjct: 91 EKDVLLNEDEFTRVFEISAIRVPAKDCFALENRLRGHLLNWPRIRNIARVPGDEIEEDVV 150
Query: 150 KLLGNNNDGSHGGNEDFSGVV-----------GDEVNSVLFREELVKSFDARGFVKFRNL 198
KLLG D + V G+ ++SVL R++L ++F++ G++KFRNL
Sbjct: 151 KLLGRETDEEEEDEDSVVDSVNRRIRGKAEGDGERLSSVLHRDKLARTFNSTGYLKFRNL 210
Query: 199 ARISR-----LXXXXXXXXXXXXXXXXXXXXLYXXXXXXXXRKEMSGLLGDEFRGGEKWR 253
A+ISR + ++ GLLG+ + +WR
Sbjct: 211 AKISRPKRKRKTERTREGKEKEIASRRNEMAVVEVVETRGGEEDFEGLLGEGYGSRGRWR 270
Query: 254 GSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEIL 313
GSTRLLLLDE+ + V++ PEAIKVL + + + + ELVKCRLTLFYDYW M EIL
Sbjct: 271 GSTRLLLLDEKYSGEEVQDLPEAIKVLFAEAKMADASLSFELVKCRLTLFYDYWPMIEIL 330
Query: 314 EALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHN 373
EA+LPKGMI+PSAFE VGHIAHLNLR+EH P+K LIAKVVLDKN+PKIQTVVNKID IHN
Sbjct: 331 EAVLPKGMIVPSAFEMVGHIAHLNLRDEHLPYKRLIAKVVLDKNQPKIQTVVNKIDPIHN 390
Query: 374 DYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDV 433
D+RTMQLEVLAGN+SLVT+++ + L +YWNSKL TERQRLL GF+ DVVCDV
Sbjct: 391 DFRTMQLEVLAGNHSLVTLVVENGLRFHVDLARVYWNSKLGTERQRLLLGFDQNDVVCDV 450
Query: 434 FAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493
FAGVGPI + AA+IVKRVYANDLNP+AV+++E+NSV+NKLEK+IE+FNMDGRRFI AMF+
Sbjct: 451 FAGVGPIALAAARIVKRVYANDLNPHAVEFMEQNSVVNKLEKRIEIFNMDGRRFIKAMFS 510
Query: 494 SQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHE 553
S+K K+TQVVMNLP DA E LDAFRG+Y DR D +FP IH+YGFSKA DPEFDFHE
Sbjct: 511 SEKGQKVTQVVMNLPKDAAESLDAFRGVYNDRHRDEGLSFPTIHVYGFSKASDPEFDFHE 570
Query: 554 RIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRS 597
RIRIAL EVAV+V+MR+VRLVAPGKWMLCASF+LP++VAF+R++
Sbjct: 571 RIRIALSEVAVDVKMRKVRLVAPGKWMLCASFILPKNVAFSRKN 614
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| POMBASE|SPAPB18E9.01 trm5 "tRNA (guanine) methyltransferase Trm5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 6.5e-68, Sum P(3) = 6.5e-68
Identities = 101/198 (51%), Positives = 127/198 (64%)
Query: 293 LELVKCRLTLFYDYWLMNEILEALLPKGMII--PSAFETVGHIAHLNLREEHQPFKYLIA 350
+ELV +LTL YDYW ++IL+A+LP G PS F VGHIAH+NLREE P+KY+I
Sbjct: 106 IELVPFQLTLDYDYWRADDILDAILPPGEKEDHPSGFTAVGHIAHMNLREEWLPYKYIIG 165
Query: 351 KVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWN 410
KV+LDKN P I+TVVNK D I +RT Q+EVLAG + + + F +YWN
Sbjct: 166 KVILDKN-PSIETVVNKTDTIDTKFRTFQMEVLAGKDDFIVTQSESNCKFRFDFSKVYWN 224
Query: 411 SKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL 470
S+L+TE RL+ F D VCDV AGVGP PA K V+ANDLNPY+ + L N L
Sbjct: 225 SRLSTEHDRLIQQFQPGDAVCDVMAGVGPFACPAGKKNVIVFANDLNPYSYESLVENIFL 284
Query: 471 NKLEKKIEVFNMDGRRFI 488
NK+ ++ FN DGR FI
Sbjct: 285 NKVANFVKAFNQDGREFI 302
|
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| TAIR|locus:2078386 AT3G56120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
Identities = 113/265 (42%), Positives = 159/265 (60%)
Query: 256 TRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEA 315
TRL++L E + + ++ E PE E+ + LE+V +TL Y YW + +L+
Sbjct: 52 TRLVILSESVKNADLSEIPE------EKLNQLKKLSELEVVPHSVTLGYSYWSADHLLKQ 105
Query: 316 LLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDY 375
+LP G+ IPS+FET+GHIAHLNL +E PFK +IAKV+ DKN P+I+T+VNK+ I N++
Sbjct: 106 ILPDGLDIPSSFETIGHIAHLNLHDELLPFKDVIAKVIYDKNYPRIKTIVNKVGTISNEF 165
Query: 376 RTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFA 435
R + EVLAG N + T + + + +YWNS+L E RL S F + VCD+FA
Sbjct: 166 RVPKFEVLAGENGMETEVKQYGARFKLDYGLVYWNSRLEHEHMRLSSLFKPGETVCDMFA 225
Query: 436 GVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495
G+GP IPAA+ VYANDLNP +V YL+ N+ NK++ I V NMD R+F + A
Sbjct: 226 GIGPFAIPAAQKGCFVYANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFFSHLMAVS 285
Query: 496 KAHKITQVVMNLPNDATEFLDAFRG 520
Q V + ND T+ RG
Sbjct: 286 TCEDNLQSVAD--NDKTKEAAVSRG 308
|
|
| ZFIN|ZDB-GENE-030131-5978 trmt5 "TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 140/343 (40%), Positives = 198/343 (57%)
Query: 257 RLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEAL 316
RLLLLD + + + + L + + P E+ L L Y+ + EIL A+
Sbjct: 121 RLLLLDPNSITSSDSFGSDEAEAL-----KAYSVPQ-EIQSYELKLTYENFKSEEILRAV 174
Query: 317 LPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYR 376
LP+G + S F VGHIAH+NLRE P++ LI +V++DKN P I VVNK + I + YR
Sbjct: 175 LPEGQDVTSGFSRVGHIAHMNLREHQLPYRKLIGQVIIDKN-PGITCVVNKTNTIDSTYR 233
Query: 377 TMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAG 436
Q+EVLAG +++V + + + F +YWN +L+TE +R++S + D V DVFAG
Sbjct: 234 NFQMEVLAGESNMVAKVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRDDTVVDVFAG 293
Query: 437 VGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-----DAM 491
VGP IPAA+ V ANDLNP + +L+ N+ LNK+++KI N+DGR FI + +
Sbjct: 294 VGPFAIPAARRGCAVLANDLNPESFRWLQHNAKLNKVDQKITTSNLDGRDFIRGPVRERL 353
Query: 492 FASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDF 551
A K + VVMNLP A EFLDAF+G+ P+ + P++H YGFSK DP+ D
Sbjct: 354 PALMKGSQKIHVVMNLPALALEFLDAFKGLLDPEPDQSLSNLPQVHCYGFSKENDPQRDV 413
Query: 552 HERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAF 593
ER +L + + VR VAP K M+C SF LP V +
Sbjct: 414 VERAEASLKTNLQGQCSVHLVRNVAPNKEMMCVSFTLPRGVLY 456
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| UNIPROTKB|Q32P41 TRMT5 "tRNA (guanine(37)-N1)-methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 138/354 (38%), Positives = 206/354 (58%)
Query: 256 TRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEA 315
+RL++LD + + + F +A +LEQ N +P ++ K L L Y+++ EIL A
Sbjct: 135 SRLIMLDPYKIFTH-DSFEKAELSVLEQ---LNVSP--QISKYNLELTYEHFKSEEILRA 188
Query: 316 LLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDY 375
+LP+G + S F +GHIAHLNLR+ FK+LI +V++DKN P I + VNKI+ I N Y
Sbjct: 189 VLPEGQDVTSGFSRIGHIAHLNLRDHQLSFKHLIGQVMIDKN-PGITSAVNKINNIDNMY 247
Query: 376 RTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFA 435
R Q+EVL+G +++T + ++ + F +YWN +L+TE R+ DV+ DVFA
Sbjct: 248 RNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFA 307
Query: 436 GVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA----- 490
GVGP IP AK V+ANDLNP + +L N LNK+++K++VFN+DG+ F+
Sbjct: 308 GVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEE 367
Query: 491 ---MFASQKAHKIT-QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546
+ K K + VVMNLP A EFL AF+ + +P ++F P +H Y FSK +
Sbjct: 368 LMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEF-LPIVHCYSFSKDAN 426
Query: 547 PEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRSPN 599
P D +R L + + + VR VAP K MLC +F +P SV + ++ N
Sbjct: 427 PAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN 480
|
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| CGD|CAL0003706 orf19.1305 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 90/191 (47%), Positives = 125/191 (65%)
Query: 300 LTLFYDYWLMNEILEALLPKGMI--IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKN 357
L L Y +W EIL+++LP+ +I +PS F GH+AH+NLR+E++PF LI +V+LDKN
Sbjct: 116 LKLDYSFWKSEEILKSILPENLIDDVPSGFSQAGHLAHINLRDEYKPFGKLIGQVILDKN 175
Query: 358 KPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER 417
P + TVV+K++ I N +RT LE+LAG + + F +YWNS+L+TE
Sbjct: 176 -PSVLTVVDKVNTIANKFRTFPLELLAGEPNYIVEQSESGCKFKFDFSKVYWNSRLSTEH 234
Query: 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKI 477
+R++ FN DVV DVF GVGP IPA+K V ANDLNP + YL+ N +NK+E I
Sbjct: 235 ERIIGKFNSGDVVGDVFGGVGPFAIPASKKNVIVLANDLNPESYKYLQENIKINKVEPFI 294
Query: 478 EVFNMDGRRFI 488
+ FN+DGR FI
Sbjct: 295 KPFNLDGREFI 305
|
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| UNIPROTKB|F1NFG8 TRMT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 138/347 (39%), Positives = 192/347 (55%)
Query: 262 DEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGM 321
D +LV + + PE E++ + + E+ K L L Y+ + EIL A+LP+G
Sbjct: 133 DSKLVILDPHKIPEFSLGESEKEVLKQLHISPEVSKYNLELTYENFKSEEILRAVLPEGQ 192
Query: 322 IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLE 381
+ S F VGHIAH+NLR+ P+++LI +V++DKN P I VVNK I + YR Q+E
Sbjct: 193 DVTSGFSRVGHIAHVNLRDHQLPYRHLIGQVIVDKN-PGITCVVNKTSIIDSTYRNFQME 251
Query: 382 VLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPIC 441
VLAG N+LVT + ++ + F +YWN +L+TE R++ DV+ DVFAG+GP
Sbjct: 252 VLAGENNLVTKVKENNFTYELDFAKVYWNPRLSTEHGRIVELLKPGDVLFDVFAGIGPFA 311
Query: 442 IPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501
IPAA+ V+ANDLNP + +L N LNK++ KI+ FNMDGR F+ + ++T
Sbjct: 312 IPAARKKCVVFANDLNPESYHWLLHNCKLNKVDNKIKAFNMDGRDFLLGPVREELRKELT 371
Query: 502 ---------QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFH 552
+VMNLP A EFLD FR + P P +H YGFSK +P D
Sbjct: 372 LAKEQKTAFHIVMNLPALAIEFLDVFRHLLVGEPCSTA-VLPTVHCYGFSKHENPAKDIQ 430
Query: 553 ERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRSP 598
ER AL + VR VAP K MLC +F +P V + R P
Sbjct: 431 ERAEAALGASLEGRCSTYLVRNVAPNKEMLCITFQIPADVLYKRPCP 477
|
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| UNIPROTKB|Q3MHN8 TRMT5 "tRNA (guanine(37)-N1)-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 136/358 (37%), Positives = 207/358 (57%)
Query: 254 GSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEIL 313
G RL++LD + V+ F + +L+Q N P ++ K L L Y+ + EIL
Sbjct: 131 GEGRLIMLDPYKMF-TVDSFEKEELSILKQ---LNVNP--QISKYNLDLTYENFKSEEIL 184
Query: 314 EALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHN 373
A+LP+G + S F VGHIAHLNLR+ P+K+LI +V++DKN P I + VNKI+ I N
Sbjct: 185 RAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPYKHLIGQVMIDKN-PGITSAVNKINNIDN 243
Query: 374 DYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDV 433
YR ++EVL+G +++T + ++ + F +YWN +L+TE R+ DV+ DV
Sbjct: 244 TYRNFEMEVLSGEENMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDV 303
Query: 434 FAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI----- 488
FAGVGP IPAAK V+ANDLNP + +L N LNK+++K++VFN+DGR F+
Sbjct: 304 FAGVGPFAIPAAKKKCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGRDFLQGPVR 363
Query: 489 -DAM-----FASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542
+ M + ++ H + +VMNLP A EFL AF+ + +P ++ P +H Y FS
Sbjct: 364 EELMQQLGPLSKERKHSV-HIVMNLPAKAIEFLSAFKALLEGQPCGSEL-LPIVHCYSFS 421
Query: 543 KARDPEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRSPN 599
K +P D +R L + + + VR VAP K MLC +F +P ++ + ++ N
Sbjct: 422 KDANPAKDVQQRAATVLGISLEAYSSVHLVRNVAPNKEMLCITFRIPAAILYKNQTVN 479
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| MGI|MGI:1923607 Trmt5 "TRM5 tRNA methyltransferase 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 139/353 (39%), Positives = 199/353 (56%)
Query: 256 TRLLLLDEELVDKNVEEFPEA-IKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILE 314
+RL++LD + + F +A + VL E D +P L LT Y+ + EIL+
Sbjct: 128 SRLIMLDPYRM-LTADSFDKAELGVLKELDV----SPQLSQYNLELT--YENFKSEEILK 180
Query: 315 ALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHND 374
A+LP+G + S F VGHIAHLNLR+ PFK+LI +V++DKN P I + VNK I N
Sbjct: 181 AVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKHLIGQVMVDKN-PGITSAVNKTSNIDNT 239
Query: 375 YRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVF 434
YR Q+EVL G +++T + ++ + F +YWN +L+TE R+ N DV+ DVF
Sbjct: 240 YRNFQMEVLCGEENMLTKVRENNYTYEFDFSKVYWNPRLSTEHGRITELLNPGDVLFDVF 299
Query: 435 AGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA---- 490
AGVGP IPAA+ V+ANDLNP + +L N LNK+++K++VFNMDG+ FI
Sbjct: 300 AGVGPFAIPAARKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNMDGKDFIQGPVRE 359
Query: 491 -----MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545
+ S +A +VMNLP A EFL FR + +P + P +H Y FSK
Sbjct: 360 ELMLRLGLSAEAKPSVHIVMNLPAKAIEFLSVFRSLLDGQPCSTEL-LPTVHCYCFSKDS 418
Query: 546 DPEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRS 597
DP D ++ L V + + + VR VAP K MLC +F +P + + +S
Sbjct: 419 DPAKDVRQQAEAVLGVSLETSSSVHLVRNVAPNKEMLCITFQIPTATLYRNQS 471
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| UNIPROTKB|I3L8T3 TRMT5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 134/356 (37%), Positives = 206/356 (57%)
Query: 256 TRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEA 315
+RL++LD + + + F + +L+Q N +P ++ K L L Y+ + EIL A
Sbjct: 135 SRLIMLDPYKIFTS-DSFEKEELSILKQ---LNVSP--QISKYNLELTYENFKSEEILRA 188
Query: 316 LLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDY 375
+LP+G + S F VGHIAHLNLR+ P+K+LI +V +DKN P I + VNKI+ I N Y
Sbjct: 189 VLPEGQDVTSGFSRVGHIAHLNLRDHQLPYKHLIGQVTIDKN-PGITSAVNKINNIDNTY 247
Query: 376 RTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFA 435
R Q+EVL+G +++T + ++ + F +YWN +L+TE R+ DV+ DVFA
Sbjct: 248 RNFQMEVLSGEENMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFA 307
Query: 436 GVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA----- 490
GVGP IPAAK V+ANDLNP + +L N LNK+++K++VFN+DG+ F+
Sbjct: 308 GVGPFAIPAAKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVREE 367
Query: 491 ------MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544
+ + ++ H + +VMNLP A EFL AF+ + +P ++ P +H Y FSK
Sbjct: 368 LMQQLGLLSKERKHSV-HIVMNLPAKAVEFLCAFKSLLDGQPCSSEL-LPIVHCYSFSKD 425
Query: 545 RDPEFDFHERIRIAL-VEVAVNVEMRRVRLVAPGKWMLCASFVLPESVAFARRSPN 599
+P D ++ L V + + VR VAP K MLC +F +P +V + ++ N
Sbjct: 426 ANPAKDVQQQAGTVLGVSLEACSSVHLVRNVAPNKEMLCITFQIPAAVLYKNQTEN 481
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6NQ64 | TRM52_ARATH | 2, ., 1, ., 1, ., 2, 2, 8 | 0.5814 | 0.96 | 0.9305 | yes | no |
| F6H2F8 | TRM51_VITVI | 2, ., 1, ., 1, ., 2, 2, 8 | 0.6118 | 0.9633 | 0.9506 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1.31 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.7__1498__AT4G27340.1 | annotation not avaliable (617 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 600 | |||
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 3e-54 | |
| pfam02475 | 199 | pfam02475, Met_10, Met-10+ like-protein | 2e-52 | |
| TIGR00308 | 374 | TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltran | 2e-05 | |
| COG1867 | 380 | COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyl | 4e-05 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 6e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-05 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 8e-05 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 1e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-04 | |
| pfam02005 | 375 | pfam02005, TRM, N2,N2-dimethylguanosine tRNA methy | 2e-04 | |
| PRK04338 | 382 | PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tR | 0.001 | |
| TIGR00479 | 431 | TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf | 0.002 | |
| COG3392 | 330 | COG3392, COG3392, Adenine-specific DNA methylase [ | 0.002 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 0.003 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 3e-54
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 21/291 (7%)
Query: 296 VKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLD 355
V+ R L + + E +L + ++PS+F+ +G IA L++ +E +P+K IA+ +L
Sbjct: 61 VRRRSNENLKEILSDRLPEEVLRE--LVPSSFDIIGDIAILSIPDELEPYKREIAEAILR 118
Query: 356 KNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLAT 415
+ K++ V+ K + ++R +LEVLAG T+ + +Y++ +L+T
Sbjct: 119 VH-GKVKAVLLKEGPVAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLST 177
Query: 416 ERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKR-VYANDLNPYAVDYLERNSVLNKLE 474
ER R+ + V D+FAGVGP IP AK + VYA D+NP AV+YL+ N LNK+E
Sbjct: 178 ERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE 237
Query: 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFP 534
++E D R + +++M LP A EFL + +D
Sbjct: 238 GRVEPILGDAREVA------PELGVADRIIMGLPKSAHEFLPLALELLKDG--------G 283
Query: 535 KIHLYGFSKARDPEFDFHERIRIALVEVAVNVE---MRRVRLVAPGKWMLC 582
IH Y F D E +RI+ A + VE +RRV+ +PG + +
Sbjct: 284 IIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVV 334
|
Length = 341 |
| >gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-52
Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 19/207 (9%)
Query: 325 SAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLA 384
S+F+ +G I LN+ EE P+K +I + +L K K ++ V+ K+ + ++RT +LEV+A
Sbjct: 1 SSFDIIGDIVILNIPEELMPYKKVIGEAILKKTK--VKAVLRKVGIVTGEFRTRRLEVIA 58
Query: 385 GNNSLVTMLLFH--HLSLFRCFD--TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPI 440
G + T+ H + F+ D +Y++ +L ER+R+ +VV D+FAG+GP
Sbjct: 59 GEDRTETI---HKENGCRFK-IDVSKVYFSPRLIGERERIAKLVKEGEVVVDMFAGIGPF 114
Query: 441 CIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498
IP AK KRVYA +LNP AV YL+ N LNK+E I D R I
Sbjct: 115 SIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVI-------LEG 167
Query: 499 KITQVVMNLPNDATEFLDAFRGIYRDR 525
+V+MNLP A EFLD +D
Sbjct: 168 VADRVIMNLPKSAHEFLDKALRAVKDG 194
|
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199 |
| >gnl|CDD|232913 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 405 DTIYWNSKLATER----------QRLLSGFNFKDVVCDVFAGVGPICIPAAK---IVKRV 451
+T+++N ++ R L + ++ D + G I A V+ V
Sbjct: 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIA-DALSASGIRAIRYAHEIEGVREV 72
Query: 452 YANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI 488
+AND+NP AV+ ++ N N +E IEV N D +
Sbjct: 73 FANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVL 108
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes [Protein synthesis, tRNA and rRNA base modification]. Length = 374 |
| >gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 429 VVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483
V D + G I A +V ND++P AV+ ++ N LN E EV N D
Sbjct: 55 RVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKD 110
|
Length = 380 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486
+D D+ AG G + + AA +RV A + +P E N + EV D R
Sbjct: 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARD 91
Query: 487 F 487
+
Sbjct: 92 Y 92
|
Length = 252 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 428 DVVCDVFAGVG--PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 485
D V D AG G + A RV +L+P A R L L ++ V D R
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 486 RFIDAMFASQKAHKITQVVMNLPNDAT 512
++ V+ N P
Sbjct: 62 ELLELP-----DGSFDLVLGNPPYGPR 83
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 430 VCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI 488
V D+ G G + + A RV D++P A++ + L +EV D
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKA-AAALLADNVEVLKGDAEELP 60
Query: 489 D 489
Sbjct: 61 P 61
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486
+ V D++ GVG +P AK VK+V+ +++P AV+ + N+ N ++ +E D
Sbjct: 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEE 352
Query: 487 FIDAMFASQKAHKI 500
F A + K +
Sbjct: 353 FTPAWWEGYKPDVV 366
|
Length = 432 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL-EKKIEVFNMD 483
D V +V G G + I AAK K+V D+NPYAV+ + N+ LN + +EV D
Sbjct: 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD 81
|
Length = 188 |
| >gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 448 VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487
V+ V+AND++P AV+ ++ N LN++E + + D
Sbjct: 74 VEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANML 113
|
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria. Length = 375 |
| >gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 429 VVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486
V D + G I A V++V ND+NP AV+ +++N LN LE +VFN D
Sbjct: 60 SVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANA 118
Query: 487 ---------------------FIDAMFASQKAHKI 500
F+D+ S K +
Sbjct: 119 LLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGL 153
|
Length = 382 |
| >gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 473
+++V D + GVG +P AK K V ++ P +V+ ++N+ LN +
Sbjct: 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI 339
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431 |
| >gnl|CDD|225927 COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 429 VVCDVFAGVGPICIPAAKIVKRVYANDLNPYA----VDYLERNSV-LNKLEKKIEVFNMD 483
+ CD+FAG G + K ++ ANDL Y+ +Y+ N++E ++ N+
Sbjct: 30 IFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSYLLNQNYIGNIQEIPNQIELLNKINNVA 89
Query: 484 GRR 486
++
Sbjct: 90 LKK 92
|
Length = 330 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 430 VCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEV 479
+ D+ G G I I AK V A D++P A+ N+ N L + + V
Sbjct: 114 ILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVV 165
|
Length = 280 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 100.0 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 100.0 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 100.0 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 99.93 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.9 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 99.9 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.9 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.87 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.82 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.82 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.82 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.77 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.76 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.75 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.68 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.65 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.63 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.63 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.59 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.58 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.5 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.42 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.4 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.39 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.38 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.37 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.37 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.35 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.31 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.3 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.29 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.28 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.28 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.27 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.24 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.23 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.22 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.22 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.2 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.18 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.18 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.17 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.17 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.16 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.15 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.15 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.15 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.13 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.13 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.12 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.12 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.1 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.1 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.1 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 99.1 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.09 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.09 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.08 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.08 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.07 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.07 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.07 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.06 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.06 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.05 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.05 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.04 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.04 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.04 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.02 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.01 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.01 | |
| PLN02476 | 278 | O-methyltransferase | 99.01 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.0 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.98 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.97 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.97 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.96 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.94 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.94 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.92 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.92 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.9 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.9 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.88 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.88 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.88 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.87 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.87 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.87 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.87 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.85 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.83 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.83 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.82 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.81 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.81 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.81 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.79 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.79 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.79 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.78 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.77 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.75 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.74 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.72 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.7 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.7 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.69 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.69 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.69 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.68 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.67 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.67 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.67 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.65 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.65 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.63 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.63 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.62 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.61 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.6 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.6 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.58 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.57 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.56 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.54 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.52 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.51 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.51 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.5 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.48 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.47 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.47 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.45 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.44 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.44 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.43 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.42 | |
| PLN02366 | 308 | spermidine synthase | 98.42 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.42 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.41 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.4 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.4 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.4 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.4 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.39 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.39 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.38 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.37 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.36 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.34 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.34 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.33 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.33 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.33 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.32 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.31 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.3 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.25 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.24 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.24 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.22 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.21 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 98.19 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.19 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.19 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.18 | |
| PLN02823 | 336 | spermine synthase | 98.16 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.13 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.11 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.1 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.1 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.06 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.06 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.05 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.04 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.03 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.98 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.97 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.93 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.89 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.89 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.86 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.83 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.8 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.77 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.76 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.7 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.61 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.57 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.55 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.53 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.51 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.5 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.41 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.38 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.37 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.33 | |
| PHA01634 | 156 | hypothetical protein | 97.32 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.23 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.12 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.12 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.09 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.05 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.05 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.04 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.04 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.02 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.02 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.97 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.93 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.91 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.85 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.85 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.82 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.79 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.78 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.72 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.69 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 96.69 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.59 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.58 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.49 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 96.48 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.42 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.22 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.99 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.99 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.97 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 95.89 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.76 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.75 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.68 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 95.48 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.4 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.36 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 95.33 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.23 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.12 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.08 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.01 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.96 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 94.87 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.82 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 94.69 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.61 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.56 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 94.3 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.29 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 93.93 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 93.68 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.65 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 93.28 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 92.94 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 92.94 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 92.05 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.98 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.72 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.57 | |
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 91.23 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 91.16 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 91.14 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.08 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.63 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 90.39 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.04 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.9 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.03 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 88.98 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.71 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 88.52 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 88.0 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 87.7 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 86.31 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 85.34 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 85.25 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 84.34 | |
| COG3392 | 330 | Adenine-specific DNA methylase [DNA replication, r | 81.87 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 80.22 |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-66 Score=542.05 Aligned_cols=385 Identities=43% Similarity=0.639 Sum_probs=332.1
Q ss_pred ccccccccceeeeeeeeeeecccchHHHHHHhhccccCCccccccccccCCchhhHHHhhcCCCCCCCCCCCCCCCCCCC
Q 007525 92 KAFIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGGNEDFSGVVG 171 (600)
Q Consensus 92 ~~~ld~~~f~~~~~~~a~rvp~~~~~~~~~~l~~~~l~~pr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (600)
=..+|++.|..++++.|+++|.+.|+...+++.+..++.||++.|.++|-|.-
T Consensus 30 ~~~~~~~~~~tt~~l~al~~~~e~vs~~ir~~~~~~~r~p~i~~iie~~kd~l--------------------------- 82 (495)
T KOG2078|consen 30 MCMFDRSLFKTTLPLGALKLPGEPVSDDIRLAKIGILRDPRIPKIIEDPKDVL--------------------------- 82 (495)
T ss_pred EEEEehhhhhcccccchhhcCCcchHHHHHHhhhhhhccCCCCccccCCcccc---------------------------
Confidence 45689999999999999999999999999999999999999999998754420
Q ss_pred CccchhhHHHHHhhhccccccchhhhhHHHhHHHHhhhhhhcccCCCCCCCCcceeeehhhHHhhhhccccCcccCCCcc
Q 007525 172 DEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGNGRKGELYVVEVVEEERKEMSGLLGDEFRGGEK 251 (600)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (600)
T Consensus 83 -------------------------------------------------------------------------------- 82 (495)
T KOG2078|consen 83 -------------------------------------------------------------------------------- 82 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceeEEecccccccccCCCChHHHHHHhhhhcccCCCCCeeEEEeeeeecccccChHHHHHhcCCCCCCCCeeEEEEC
Q 007525 252 WRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVG 331 (600)
Q Consensus 252 ~~~~~rllLl~~~~~~~~~~~~p~~~~~~l~e~~~~~~~~~~e~v~~~l~l~Y~~~~~~eiL~~~LP~~~~iPssfd~iG 331 (600)
..+|++.+++.++... +.+|+..+-.++... ...++++++++.|+|+||+++||++++||++.+.|+||.++|
T Consensus 83 --~~tr~~~ls~~rv~~d-dsf~~~~ll~~e~lN----~~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~~G 155 (495)
T KOG2078|consen 83 --EFTRLVELSPSRVPAD-DSFPEEELLVLELLN----WPELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTITG 155 (495)
T ss_pred --cceeEEEeeccccccc-ccchHHHHHHhhhcC----cccceeeccccccchhhhhHHHHHHhhCcccccccccceeee
Confidence 0367889998876544 337776665544321 136899999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecC
Q 007525 332 HIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNS 411 (600)
Q Consensus 332 ~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~ 411 (600)
||+|+|++++.+|++..||++++||+ +.+++|++|.+.|++.||++++++|+|+.+++|+++|+|++|++|++++|||+
T Consensus 156 hIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWns 234 (495)
T KOG2078|consen 156 HIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNS 234 (495)
T ss_pred eeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeec
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCc-EEEEEcChHHHHHH
Q 007525 412 KLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFIDA 490 (600)
Q Consensus 412 Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nr-V~~i~gDare~l~~ 490 (600)
|+++||.|+...+++|++|+|+|||+|+|++||++++|+|+|+|+||+|++||+.|+++|++... |+++++||.+|+++
T Consensus 235 RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 235 RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999765 99999999999952
Q ss_pred -------HHHh-----------------h--------cCCcccEEEeCCCcchHHHHHHHHHHhcC-CCCCCCCCccEEE
Q 007525 491 -------MFAS-----------------Q--------KAHKITQVVMNLPNDATEFLDAFRGIYRD-RPEDAKFTFPKIH 537 (600)
Q Consensus 491 -------l~~~-----------------~--------~~~~fD~VVmNpP~~a~eFLdaa~~lLk~-~~~~g~~~~p~IH 537 (600)
+.+. + .....+|++||+|+.+.+||..|.+.+.. ++++ ...+|+||
T Consensus 315 e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d-~~~lplvh 393 (495)
T KOG2078|consen 315 EPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPID-KTPLPLVH 393 (495)
T ss_pred CCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccc-cccceeEE
Confidence 1100 0 01125899999999999999999999987 4332 34678999
Q ss_pred EEeccC---CCCCchh-HHHHHHHHHhhcc---cceEEEEeEEecCCCcEEEEEEEeccccc
Q 007525 538 LYGFSK---ARDPEFD-FHERIRIALVEVA---VNVEMRRVRLVAPGKWMLCASFVLPESVA 592 (600)
Q Consensus 538 vY~F~k---~~d~~~d-i~eRI~~~L~~~~---~~~~v~~VR~VAP~K~mycvsFrlp~~v~ 592 (600)
||||++ ......+ +..|+...++-.. ..+.+|.||+|||+|.|||++|++|..++
T Consensus 394 cy~F~k~~~~~~s~e~~V~ar~~~~~kv~~e~~~~~~~h~VR~VapnK~M~ca~~~lp~~~l 455 (495)
T KOG2078|consen 394 CYCFSKLFCDVSSTEDLVTARIVAALKVFAEDGALVSLHLVRKVAPNKEMYCASFQLPANVL 455 (495)
T ss_pred EEEEeecccCCCchHHHHHHHHHhhcceeeccccceeeeeeeccCCCcccchhhhhcHHHHh
Confidence 999999 3332223 5555544443222 23589999999999999999999999887
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=432.59 Aligned_cols=266 Identities=33% Similarity=0.506 Sum_probs=240.7
Q ss_pred ChHHHHHhcCCCCC---CCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEe
Q 007525 308 LMNEILEALLPKGM---IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLA 384 (600)
Q Consensus 308 ~~~eiL~~~LP~~~---~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLa 384 (600)
+++++++..+|.+. .+|++|+++||||+++++++..+|+..|++++++.+ +++++|+.+...+.|++|.+.+++||
T Consensus 68 ~l~~~~~~~~~~~~~~~~~p~~~~iiGdIai~~~~~e~~~~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~~R~~~le~la 146 (341)
T COG2520 68 NLKEILSDRLPEEVLRELVPSSFDIIGDIAILSIPDELEPYKREIAEAILRVH-GKVKAVLLKEGPVAGEFRVPRLEVLA 146 (341)
T ss_pred HHHHHhhccchhhhhhhcCCcceEEEccEEEEeCCcccchHHHHHHHHHHhhc-cCeeEEEEecCccCCeEeccceEEee
Confidence 46677777666653 289999999999999999998789999999999998 88999999999899999999999999
Q ss_pred cCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHH
Q 007525 385 GNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDY 463 (600)
Q Consensus 385 Ge~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~ 463 (600)
|+..++|.++||||+|++|++++|||+|+++||.|+++++.+|++|||||||+|||||++|++|+ +|+|+|+||+|+++
T Consensus 147 Ge~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 147 GERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 49999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 464 LERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 464 l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++|+++|+++++|++++||++++..++ ..+|+|+|++|.++.+|++.++.+++.+ ++||+|.|++
T Consensus 227 L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~aDrIim~~p~~a~~fl~~A~~~~k~~--------g~iHyy~~~~ 292 (341)
T COG2520 227 LKENIRLNKVEGRVEPILGDAREVAPEL------GVADRIIMGLPKSAHEFLPLALELLKDG--------GIIHYYEFVP 292 (341)
T ss_pred HHHHHHhcCccceeeEEeccHHHhhhcc------ccCCEEEeCCCCcchhhHHHHHHHhhcC--------cEEEEEeccc
Confidence 9999999999999999999999998642 5799999999999999999999999985 6999999999
Q ss_pred CCCCchhHHHHHHHHHhhc---ccceEEEEeEEecCCCcEEEEEEEec
Q 007525 544 ARDPEFDFHERIRIALVEV---AVNVEMRRVRLVAPGKWMLCASFVLP 588 (600)
Q Consensus 544 ~~d~~~di~eRI~~~L~~~---~~~~~v~~VR~VAP~K~mycvsFrlp 588 (600)
+++.......++....... ......|.|++|||++||||+++++.
T Consensus 293 e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~v~ 340 (341)
T COG2520 293 EDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLRVL 340 (341)
T ss_pred hhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEEec
Confidence 8876544566666544333 34578999999999999999999874
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=362.18 Aligned_cols=193 Identities=44% Similarity=0.707 Sum_probs=161.2
Q ss_pred eeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEec
Q 007525 325 SAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCF 404 (600)
Q Consensus 325 ssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~ 404 (600)
+|||++|||||++++++..+|++.|+++|++++ |++++|++|.+.++|++|++++++|+|++.++|+++|+||+|.+|+
T Consensus 1 t~~~~iG~Iaiv~~~~~~~~~~~~I~~~i~~~~-~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~ 79 (200)
T PF02475_consen 1 TSFEIIGDIAIVNLPEELEPYKELIAEAILEKN-PNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDL 79 (200)
T ss_dssp -EEEEETTEEEEEB-CCCCHHHHHHHHHHHHHC--T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEET
T ss_pred CceEEEccEEEEeCCcccchHHHHHHHHHHHhc-cCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEcc
Confidence 589999999999999999999999999999998 8999999999888999999999999999989999999999999999
Q ss_pred CeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 405 DTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 405 ~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
+++||++|+++||+|+.+.+++|++|+|||||+|+|+|++|+ +++.|+|+|+||+|+++|++|+++|+++++|.++++
T Consensus 80 ~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~ 159 (200)
T PF02475_consen 80 SKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING 159 (200)
T ss_dssp TTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES
T ss_pred ceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC
Confidence 999999999999999999999999999999999999999999 678999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|++++++ ...+|+|+||+|..+.+||+++..+++++
T Consensus 160 D~~~~~~-------~~~~drvim~lp~~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 160 DAREFLP-------EGKFDRVIMNLPESSLEFLDAALSLLKEG 195 (200)
T ss_dssp -GGG----------TT-EEEEEE--TSSGGGGHHHHHHHEEEE
T ss_pred CHHHhcC-------ccccCEEEECChHHHHHHHHHHHHHhcCC
Confidence 9999985 35799999999999999999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=233.52 Aligned_cols=252 Identities=17% Similarity=0.216 Sum_probs=199.6
Q ss_pred CCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCc-eEEEEccccc-ccccccceeEEEecCCceEEEEEeccEE
Q 007525 322 IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKI-QTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLS 399 (600)
Q Consensus 322 ~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~I-ktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~ 399 (600)
++|.+|+++|++++++.++-..+..+.|++.+.....+.. ...+.+...+ +..-|.+.++.|+|+.. ++.+++||++
T Consensus 89 ~LP~kw~~~g~lvl~~~~sF~~~~W~~~~~e~w~~va~sl~~~r~ar~~~vs~~~~R~~~v~~L~Gd~g-WV~~v~NGI~ 167 (351)
T KOG1227|consen 89 DLPLKWEIYGPLVLFPVNSFNHPIWQKIFQELWSVVAKSLGVSRLARNRLVSHLARRPPNVQPLYGDLG-WVKHVQNGIT 167 (351)
T ss_pred hccccceecCCEEEEeccccCChhHHHHHHHHHHhhhhccchhhhhhccccCccccCCCcccccccccc-ceeehhcCeE
Confidence 4899999999999999998888888999998887542111 1122233333 33458899999999975 7888999999
Q ss_pred EEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHH-HhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 400 LFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIP-AAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 400 F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIp-aAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
|.+|+.+.||+.+..+|+.|+.++...|++|+|||||+|||++| +.+.| +.|+|+|+||++++.|++|++.|++.++.
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~ 247 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC 247 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999999999988999999999999999994 44556 49999999999999999999999998888
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCch---hHHHH
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEF---DFHER 554 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~---di~eR 554 (600)
.++.+|.+..- +....|||.+.+-.++.+-+..|..+|++. +| +++|+|+..+.++... +-.+.
T Consensus 248 ~i~~gd~R~~~-------~~~~AdrVnLGLlPSse~~W~~A~k~Lk~e--gg----silHIHenV~~s~~~~~~a~~v~k 314 (351)
T KOG1227|consen 248 RITEGDNRNPK-------PRLRADRVNLGLLPSSEQGWPTAIKALKPE--GG----SILHIHENVKDSDIKIVEADGVNK 314 (351)
T ss_pred HhhhccccccC-------ccccchheeeccccccccchHHHHHHhhhc--CC----cEEEEeccccccccccccccchhh
Confidence 88888887653 356799999998777888889999999986 33 4999999999876321 11111
Q ss_pred HHHHHhhcccceEEEEeEEecCCCcEEEEEEEe
Q 007525 555 IRIALVEVAVNVEMRRVRLVAPGKWMLCASFVL 587 (600)
Q Consensus 555 I~~~L~~~~~~~~v~~VR~VAP~K~mycvsFrl 587 (600)
....+...........+++++|.++|.|.+...
T Consensus 315 t~~~~~~k~~~~~tN~iks~~~r~s~~~~~s~v 347 (351)
T KOG1227|consen 315 TIKDIANKGVNSKTNRIKSFAPRISHVCVDSDV 347 (351)
T ss_pred HHHHHHhccCceeehhhccCCCccceeeeccee
Confidence 111221222345677899999999999987654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=214.10 Aligned_cols=224 Identities=15% Similarity=0.144 Sum_probs=166.2
Q ss_pred CCC-eeEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccccccc--cceeEEEecCC-ceEEEEEec
Q 007525 322 IIP-SAFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYR--TMQLEVLAGNN-SLVTMLLFH 396 (600)
Q Consensus 322 ~iP-ssfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R--~~~~evLaGe~-~~~t~vkEn 396 (600)
.+| --.|+||+++++|+.+.+ ..+++.|.++|.+.+ + .++|+.+.+....... .....+++|+. +..+.++||
T Consensus 111 glpGliVD~y~d~~vvq~~~~~~~~~~~~i~~aL~~~~-~-~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~~~~~v~E~ 188 (396)
T PRK15128 111 GLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLY-P-ECAIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEH 188 (396)
T ss_pred CCCcEEEEEECCEEEEEECcHHHHHhHHHHHHHHHHHc-C-CcEEEEcCcchhHHhcCCCccceEEecCCCCccEEEEEC
Confidence 355 369999999999999876 568999999999876 3 4688877553211111 23456889985 556779999
Q ss_pred cEEEEEecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 397 HLSLFRCFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 397 G~~F~vD~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNakl 470 (600)
|++|.+|+.. +|+++|.. +..+..+.+|.+|||+|||+|.|++.++..|+ +|+++|+|+.+++.+++|+++
T Consensus 189 g~~f~vdl~~g~ktG~flDqr~~---R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~ 265 (396)
T PRK15128 189 GMKLLVDIQGGHKTGYYLDQRDS---RLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_pred CEEEEEecccccccCcChhhHHH---HHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999999985 89887643 33444456789999999999999999888765 999999999999999999999
Q ss_pred cCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-------------HHHHHHHHHhcCCCCCCCCCccEE
Q 007525 471 NKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-------------EFLDAFRGIYRDRPEDAKFTFPKI 536 (600)
Q Consensus 471 Ngl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-------------eFLdaa~~lLk~~~~~g~~~~p~I 536 (600)
|+++ ++++++++|+++++..+.. ...+||+||+|||+.+. +++..+.++++++ |++
T Consensus 266 Ngl~~~~v~~i~~D~~~~l~~~~~--~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g--------G~l 335 (396)
T PRK15128 266 NKLDLSKAEFVRDDVFKLLRTYRD--RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG--------GIL 335 (396)
T ss_pred cCCCCCcEEEEEccHHHHHHHHHh--cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC--------eEE
Confidence 9996 4699999999999866432 14579999999998531 2233556677765 577
Q ss_pred EEEeccCCCCCchhHHHHHHHHHhh
Q 007525 537 HLYGFSKARDPEFDFHERIRIALVE 561 (600)
Q Consensus 537 HvY~F~k~~d~~~di~eRI~~~L~~ 561 (600)
.++..+..-+ ..++.+-+.++...
T Consensus 336 v~~scs~~~~-~~~f~~~v~~aa~~ 359 (396)
T PRK15128 336 LTFSCSGLMT-SDLFQKIIADAAID 359 (396)
T ss_pred EEEeCCCcCC-HHHHHHHHHHHHHH
Confidence 7665444332 23555555554433
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-25 Score=233.92 Aligned_cols=418 Identities=23% Similarity=0.215 Sum_probs=315.4
Q ss_pred CCCccccc---CcccccccCcccccceEEEeecccccccccCCCCCCCCCCCCcCCCCCCCCccchhc-----cccccc-
Q 007525 21 PLPSVIFS---PPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQSSLPYGPSLFKGKTPPTLKQQQD-----QQENET- 91 (600)
Q Consensus 21 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~- 91 (600)
++|+.++| +.+.--.|++ | .++|.|+.+.-.. +++|||++.+| .|+.-..++. +.|...
T Consensus 6 ~~~~~~~s~~~r~~~~~~p~~---k-~~~~~~~~~~~~t-------t~~l~al~~~~-e~vs~~ir~~~~~~~r~p~i~~ 73 (495)
T KOG2078|consen 6 SFPFPVISYSARFILKPYPPP---K-RIMCMFDRSLFKT-------TLPLGALKLPG-EPVSDDIRLAKIGILRDPRIPK 73 (495)
T ss_pred cCCCcchhhcceeeccCCCCc---c-eEEEEEehhhhhc-------ccccchhhcCC-cchHHHHHHhhhhhhccCCCCc
Confidence 88999888 3444334444 4 7889888776433 78999999999 5555444442 222111
Q ss_pred --ccccccccceeeeeeeeeeecccchHHHHHHhhccccCCccccccccccCCchhhHHHhhcCCCCCCC-CCCCCCCC-
Q 007525 92 --KAFIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGS-HGGNEDFS- 167 (600)
Q Consensus 92 --~~~ld~~~f~~~~~~~a~rvp~~~~~~~~~~l~~~~l~~pr~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 167 (600)
+..=|...|+|.+-+.+.|||+++|.+.+.+|++++||||++++|.+.++++.+-.-++++....-.- .+.-++|.
T Consensus 74 iie~~kd~l~~tr~~~ls~~rv~~ddsf~~~~ll~~e~lN~~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~ 153 (495)
T KOG2078|consen 74 IIEDPKDVLEFTRLVELSPSRVPADDSFPEEELLVLELLNWPELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTI 153 (495)
T ss_pred cccCCcccccceeEEEeecccccccccchHHHHHHhhhcCcccceeeccccccchhhhhHHHHHHhhCccccccccccee
Confidence 11112236999999999999999999999999999999999999999999988777776666664111 11111121
Q ss_pred CCCCCccchhhHHHHHhhhccccccchhhhhHHHhHHHHhhhhhhcccCCCC--CCCCcceeeehhhHHhhhhccccCcc
Q 007525 168 GVVGDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGN--GRKGELYVVEVVEEERKEMSGLLGDE 245 (600)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (600)
-+++..++-+..+.++++.+|.-+|-|+ |++|+++++.+....+-+....+ .|++. +|+||=| ++.+|+.++|+-
T Consensus 154 ~GhIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n-~vtevre-~~~~Fk~DfskV 230 (495)
T KOG2078|consen 154 TGHIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGRITNRYRNFKLEVIAGERN-LVTEVRE-GGERFKFDFSKV 230 (495)
T ss_pred eeeeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccchhhhhcccCceEecCCCc-eEEEEec-CCeeEEEecceE
Confidence 2377889999999999999999999999 99999999998887766665554 44444 6677644 456788888887
Q ss_pred cCCCccccCceeEEecccccccccCCCChHHHHHHhhhhcccCCCCCeeEEEeeeeecccccChHHHHHhcCCCCCCCCe
Q 007525 246 FRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPS 325 (600)
Q Consensus 246 ~~~~~~~~~~~rllLl~~~~~~~~~~~~p~~~~~~l~e~~~~~~~~~~e~v~~~l~l~Y~~~~~~eiL~~~LP~~~~iPs 325 (600)
+ |+ .||...++++.. +-+.++.+.++.-...-..-....+ .|.+..+|.||.+-++|++.++-+...|+
T Consensus 231 Y-----Wn--sRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~ 299 (495)
T KOG2078|consen 231 Y-----WN--SRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPS 299 (495)
T ss_pred E-----ee--ccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchh
Confidence 6 87 799999998864 6667777777765543322222222 27899999999999999999999988999
Q ss_pred eEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEecC
Q 007525 326 AFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFD 405 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~ 405 (600)
.++++|+.|+..++.+..+|+++|++..++++.+.+.|++++.+.+.+.+|+.+.++++|.-++.+..-|++.+|+.+++
T Consensus 300 ~iei~Nmda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la 379 (495)
T KOG2078|consen 300 AIEIFNMDAKDFLRQEPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLA 379 (495)
T ss_pred heeeecccHHHHhhcCCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999987778899999999999999999999999887777766778888887777
Q ss_pred e-eeecChh-----------------HHHH---HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHH
Q 007525 406 T-IYWNSKL-----------------ATER---QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYL 464 (600)
Q Consensus 406 k-fy~n~Rl-----------------~tEr---~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l 464 (600)
. .+|+++. .+|- +++. ..+++++|.| ++.++....+|.+++.++-+...+
T Consensus 380 ~k~~~d~~~lplvhcy~F~k~~~~~~s~e~~V~ar~~-------~~~kv~~e~~--~~~~~h~VR~VapnK~M~ca~~~l 450 (495)
T KOG2078|consen 380 RKGPIDKTPLPLVHCYCFSKLFCDVSSTEDLVTARIV-------AALKVFAEDG--ALVSLHLVRKVAPNKEMYCASFQL 450 (495)
T ss_pred ccCccccccceeEEEEEEeecccCCCchHHHHHHHHH-------hhcceeeccc--cceeeeeeeccCCCcccchhhhhc
Confidence 5 3332221 1121 2222 3567888888 444455567899999999999999
Q ss_pred HHHHHHcCC
Q 007525 465 ERNSVLNKL 473 (600)
Q Consensus 465 ~eNaklNgl 473 (600)
-.|...|++
T Consensus 451 p~~~l~~~~ 459 (495)
T KOG2078|consen 451 PANVLVNEL 459 (495)
T ss_pred HHHHhhhhh
Confidence 988887765
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=212.73 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=159.5
Q ss_pred CCC-eeEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccccc-cccccc-ceeEEEecC-CceEEEEEec
Q 007525 322 IIP-SAFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRT-MQLEVLAGN-NSLVTMLLFH 396 (600)
Q Consensus 322 ~iP-ssfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~-~~~evLaGe-~~~~t~vkEn 396 (600)
..| --.|+||+++++|+.+.. ...++.|.+++.+.. +.+++|+.+.+.. .+..|. ....+++|+ ....+.+.|+
T Consensus 107 gl~Gl~vD~ygd~~vvq~~s~~~~~~~~~i~~~l~~~~-~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~~~~~i~E~ 185 (393)
T COG1092 107 GLPGLTVDRYGDYLVVQLYSAGIEIFKEAILEALAEAF-PAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAPEEVVIEEN 185 (393)
T ss_pred CCCCeEEEecCCEEEEEecccccccchHHHHHHHHHhh-cccceeEeccchhhhhhhcccccccccccccCCCcEEEEeC
Confidence 355 569999999999998876 677789999999987 6789999886322 122222 234567784 6667889999
Q ss_pred cEEEEEecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 397 HLSLFRCFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 397 G~~F~vD~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNakl 470 (600)
|.+|.+|+. .||.++|... .++.+..+ |++|||+||++|.||+.||..|+ +|++||++..+++++++|+++
T Consensus 186 g~kf~v~~~~g~kTGfFlDqR~~R--~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 186 GVKFLVDLVDGLKTGFFLDQRDNR--RALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred CeEEEEecCCcccceeeHHhHHHH--HHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh
Confidence 999999988 4899887552 33444455 99999999999999999999997 999999999999999999999
Q ss_pred cCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-------------HHHHHHHHHhcCC
Q 007525 471 NKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-------------EFLDAFRGIYRDR 525 (600)
Q Consensus 471 Ngl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-------------eFLdaa~~lLk~~ 525 (600)
|+++ +++.++++|++++++.... .+.+||+||+|||.++. ..+..+.++++++
T Consensus 263 Ng~~~~~~~~i~~Dvf~~l~~~~~--~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 263 NGLDGDRHRFIVGDVFKWLRKAER--RGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred cCCCccceeeehhhHHHHHHHHHh--cCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 9995 5689999999999987654 35689999999998642 3466777788775
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=193.42 Aligned_cols=191 Identities=15% Similarity=0.211 Sum_probs=138.8
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccc--cc--cccc-ccceeEEEecCCceEEEEEeccEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKID--AI--HNDY-RTMQLEVLAGNNSLVTMLLFHHLS 399 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~--~I--~ge~-R~~~~evLaGe~~~~t~vkEnG~~ 399 (600)
-+|+||++++||+..+. ..++..|.++|.... + ..++.+.. .+ ...+ .....++++|+.+...++.|+|++
T Consensus 18 ~VD~y~~~lvvq~~~~~~~~~~~~l~~~L~~l~-~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~ 94 (286)
T PF10672_consen 18 TVDRYGDVLVVQLYSEGMERFLDELREALEALI-P--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLK 94 (286)
T ss_dssp EEEEETTEEEEEE-SHHHHCTHHHHHHHHHHHH-C--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEE
T ss_pred EEEEECCEEEEEECCcChHHHHHHHHHHHHHHh-h--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEE
Confidence 58999999999998765 578888988888765 2 12332211 11 1111 234577899998877889999999
Q ss_pred EEEecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCC
Q 007525 400 LFRCFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKL 473 (600)
Q Consensus 400 F~vD~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl 473 (600)
|.+|+. .+|+++|.. ++.+.....|.+|||+||++|.|++.||+.|+ +|++||++..+++++++|+++|++
T Consensus 95 f~v~l~~gqktGlFlDqR~n---R~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~ 171 (286)
T PF10672_consen 95 FRVDLTDGQKTGLFLDQREN---RKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGL 171 (286)
T ss_dssp EEEESSSSSSTSS-GGGHHH---HHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEEcCCCCcceEcHHHHhh---HHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999996 389998744 34444456799999999999999999999886 899999999999999999999998
Q ss_pred C-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH----------HHHHHHHHHhcCC
Q 007525 474 E-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT----------EFLDAFRGIYRDR 525 (600)
Q Consensus 474 ~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~----------eFLdaa~~lLk~~ 525 (600)
+ ++++++++|+++++..+.+ .++||+||+|||.++. +.+..+..+++++
T Consensus 172 ~~~~~~~~~~Dvf~~l~~~~~---~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 172 DLDRHRFIQGDVFKFLKRLKK---GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp CCTCEEEEES-HHHHHHHHHH---TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred CccceEEEecCHHHHHHHHhc---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 5799999999999876532 4689999999998631 3455566666664
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-19 Score=190.66 Aligned_cols=212 Identities=20% Similarity=0.259 Sum_probs=159.8
Q ss_pred cccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HH
Q 007525 343 QPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QR 419 (600)
Q Consensus 343 ~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~R 419 (600)
.+......+.+++.+ |.+.+++...+.. .+...+.+..+++|.. .++| |..|.+.+..|||.|..++|+ ..
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~----~i~e-~~~~~~~~~sF~Q~N~~~~ekl~~~ 284 (432)
T COG2265 211 LPELEQALRELLEAF-PEIKGIVQNINRAKTNVIEGDEEITLYGLE----SIRE-GVSFQISPRSFFQVNPAVAEKLYET 284 (432)
T ss_pred chhHHHHHHHHHHhh-hhcceEEEEecCCCCceEEcceeEEEeccc----cccc-ceEEEeCCCCceecCHHHHHHHHHH
Confidence 566778888888887 8888888766543 3444556666777764 2333 999999999999999999998 45
Q ss_pred HHhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+.+.+ .++++|+|+|||+|.|++++|++..+|+|+|++++|++.|++||+.|++.| +++..+|+++++.... ..
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~---~~ 360 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWW---EG 360 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhcc---cc
Confidence 55553 477899999999999999999999999999999999999999999999998 9999999999987542 13
Q ss_pred CcccEEEeCCCcchH--HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEec
Q 007525 498 HKITQVVMNLPNDAT--EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVA 575 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~--eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VA 575 (600)
..+|.||.|||+.+. ++++.+.+.-.. .+|++=|.... +..-+. .|.+ .+..+.+|.-+.
T Consensus 361 ~~~d~VvvDPPR~G~~~~~lk~l~~~~p~---------~IvYVSCNP~T------laRDl~-~L~~--~gy~i~~v~~~D 422 (432)
T COG2265 361 YKPDVVVVDPPRAGADREVLKQLAKLKPK---------RIVYVSCNPAT------LARDLA-ILAS--TGYEIERVQPFD 422 (432)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhcCCC---------cEEEEeCCHHH------HHHHHH-HHHh--CCeEEEEEEEec
Confidence 579999999999753 677776654322 36888776432 111111 2222 234477777766
Q ss_pred --CCCcEEE
Q 007525 576 --PGKWMLC 582 (600)
Q Consensus 576 --P~K~myc 582 (600)
|+..|+.
T Consensus 423 mFP~T~HvE 431 (432)
T COG2265 423 MFPHTHHVE 431 (432)
T ss_pred cCCCccccC
Confidence 8877764
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=201.70 Aligned_cols=192 Identities=13% Similarity=0.151 Sum_probs=146.2
Q ss_pred CC---eeEEEECcEEEEEeCCCC--------cccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEE
Q 007525 323 IP---SAFETVGHIAHLNLREEH--------QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVT 391 (600)
Q Consensus 323 iP---ssfd~iG~Ia~lnL~~e~--------~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t 391 (600)
+| --+|+||++++||+.... ..++..|.++|.+......++|+.|..... . -....+.+ |+.+..+
T Consensus 425 lp~~gl~vD~y~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i~~k~~~~~-~-g~~~~~~~-g~~~~~~ 501 (702)
T PRK11783 425 LPEYNVAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKVVLKTRERQ-K-GKNQYQKL-AEKGEFL 501 (702)
T ss_pred CCccCeEEEEECCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeehhc-c-Ccchhhhc-cCCCceE
Confidence 66 589999999999998764 356788888887762113478988733211 1 11111222 6656667
Q ss_pred EEEeccEEEEEecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHH
Q 007525 392 MLLFHHLSLFRCFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLE 465 (600)
Q Consensus 392 ~vkEnG~~F~vD~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~ 465 (600)
.+.|||++|.+|+.. +|+++|.. ++.+..+.+|.+|||+|||+|.|++.+|+.|+ +|+++|+|+.|++.++
T Consensus 502 ~v~e~g~~f~v~~~~~~~tG~flDqr~~---R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~ 578 (702)
T PRK11783 502 EVTEYGAKLLVNLTDYLDTGLFLDHRPT---RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE 578 (702)
T ss_pred EEEECCEEEEEEcCCCCcceECHHHHHH---HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 799999999999774 88887643 33344445689999999999999999999876 7999999999999999
Q ss_pred HHHHHcCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCC
Q 007525 466 RNSVLNKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 466 eNaklNgl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~ 525 (600)
+|+++|+++ ++++++++|+.+++..+ ..+||+||+|||+.+ .+.+..+.++++++
T Consensus 579 ~N~~~ng~~~~~v~~i~~D~~~~l~~~-----~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 579 RNFALNGLSGRQHRLIQADCLAWLKEA-----REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred HHHHHhCCCccceEEEEccHHHHHHHc-----CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 999999997 57999999999988642 357999999999743 13566677777775
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=184.51 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=143.1
Q ss_pred ECcEEEEE-eCCCCcccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCee
Q 007525 330 VGHIAHLN-LREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTI 407 (600)
Q Consensus 330 iG~Ia~ln-L~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kf 407 (600)
.|+++++- ......+....|++.+.+.+ |.+++|+...+.. .+.+.+.+.++++|+..+...+ +|.+|.+++..|
T Consensus 193 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~--~~~~~~~~~~~F 269 (431)
T TIGR00479 193 TGELLLVLRTALEGFPHKEELALELQERY-PDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKS--GDLSFSLSARDF 269 (431)
T ss_pred CCCEEEEEEECCCccccHHHHHHHHHHhC-CCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEE--CCEEEEECCCce
Confidence 35555433 33334567778888888877 8999998754432 2334455678899987655444 899999999999
Q ss_pred eecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 007525 408 YWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483 (600)
Q Consensus 408 y~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD 483 (600)
||.|+.+++. .++.+. +.++++|||+|||+|.+++++|+.+.+|+|+|+|+.|++.+++|++.|++.| ++++++|
T Consensus 270 ~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d 348 (431)
T TIGR00479 270 FQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGT 348 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCC
Confidence 9999988876 344444 4567899999999999999999988899999999999999999999999975 9999999
Q ss_pred hHHHHHHHHHhhcCCcccEEEeCCCcch--HHHHHHHHH
Q 007525 484 GRRFIDAMFASQKAHKITQVVMNLPNDA--TEFLDAFRG 520 (600)
Q Consensus 484 are~l~~l~~~~~~~~fD~VVmNpP~~a--~eFLdaa~~ 520 (600)
+.+++..+.. ....||.|++|||+.. .++++.+..
T Consensus 349 ~~~~l~~~~~--~~~~~D~vi~dPPr~G~~~~~l~~l~~ 385 (431)
T TIGR00479 349 LETVLPKQPW--AGQIPDVLLLDPPRKGCAAEVLRTIIE 385 (431)
T ss_pred HHHHHHHHHh--cCCCCCEEEECcCCCCCCHHHHHHHHh
Confidence 9987654321 1346999999999864 567766543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-16 Score=164.47 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=123.0
Q ss_pred ccHHHHHHHHHhhcCCCceEEEEcccc-cccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHH
Q 007525 344 PFKYLIAKVVLDKNKPKIQTVVNKIDA-IHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRL 420 (600)
Q Consensus 344 pyk~lI~evLldk~~P~IktVv~K~~~-I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Ri 420 (600)
+....+.+.+.... +.+.+|....+. ..+...+.+..+++|.+.+...+ +|+.|.+.+..|||.|..++|+ ..+
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~l~g~~~~~~~~--~~~~~~~~~~sF~Q~n~~~~~~l~~~v 165 (315)
T PRK03522 89 ARLRRALPWLQAQL-PQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NGVPLFIRPQSFFQTNPAVAAQLYATA 165 (315)
T ss_pred hhHHHHHHHHHHHC-CCCEEEEEEECCCCCCcccCCceEEEeCCCeEEEEE--CCEEEEECCCeeeecCHHHHHHHHHHH
Confidence 44444555566666 788888544332 22233344556788987665556 7999999999999999988887 233
Q ss_pred HhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 421 LSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 421 v~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+.+ .++.+|||+|||+|.|++++|+.+++|+|+|+|+.|++.+++|++.|++.+ ++++++|+.++... ...
T Consensus 166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~-----~~~ 239 (315)
T PRK03522 166 RDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATA-----QGE 239 (315)
T ss_pred HHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHh-----cCC
Confidence 3332 257899999999999999999999999999999999999999999999964 99999999987642 134
Q ss_pred cccEEEeCCCcch
Q 007525 499 KITQVVMNLPNDA 511 (600)
Q Consensus 499 ~fD~VVmNpP~~a 511 (600)
.||.|++|||+..
T Consensus 240 ~~D~Vv~dPPr~G 252 (315)
T PRK03522 240 VPDLVLVNPPRRG 252 (315)
T ss_pred CCeEEEECCCCCC
Confidence 6999999999874
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=172.35 Aligned_cols=212 Identities=12% Similarity=0.127 Sum_probs=147.5
Q ss_pred ccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHHH--HH
Q 007525 344 PFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQ--RL 420 (600)
Q Consensus 344 pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~--Ri 420 (600)
+..+.+.+.+.+.. +.+.+|+...+.. .+...+.+..+++|++.....+ +|+.|.+++..|||.|..++|.. .+
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~l~G~~~i~e~~--~g~~~~~~~~~F~Q~n~~~~~~l~~~~ 225 (374)
T TIGR02085 149 AQIRRALPWLIEQL-PQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NDVPLVIRPQSFFQTNPKVAAQLYATA 225 (374)
T ss_pred hhHHHHHHHHHHHC-CCcEEEEEEECCCCCCceECceEEEEcCCCeeEEEE--CCEEEEECCCccccCCHHHHHHHHHHH
Confidence 44455556566665 7888886443321 2233344556788987655555 79999999999999999998882 23
Q ss_pred HhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 421 LSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 421 v~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+.+ .++.+|+|+|||+|.|++++|..+.+|+|+|+|+.|++.+++|++.|++++ ++++++|+.+++... ..
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~-----~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQ-----MS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhc-----CC
Confidence 3332 356899999999999999999988999999999999999999999999974 999999999887431 23
Q ss_pred cccEEEeCCCcch--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--Ee
Q 007525 499 KITQVVMNLPNDA--TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LV 574 (600)
Q Consensus 499 ~fD~VVmNpP~~a--~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~V 574 (600)
.||.|++|||+.. .++++.+.. ++++ ..|++=|-.. . + .+-+... .++.++.|. |.
T Consensus 300 ~~D~vi~DPPr~G~~~~~l~~l~~-~~p~--------~ivyvsc~p~--T----l----aRDl~~L-~gy~l~~~~~~Dm 359 (374)
T TIGR02085 300 APELVLVNPPRRGIGKELCDYLSQ-MAPK--------FILYSSCNAQ--T----M----AKDIAEL-SGYQIERVQLFDM 359 (374)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHh-cCCC--------eEEEEEeCHH--H----H----HHHHHHh-cCceEEEEEEecc
Confidence 5999999999963 355555543 3332 3666666321 1 1 1112222 346666666 44
Q ss_pred cCCCcEEEEE
Q 007525 575 APGKWMLCAS 584 (600)
Q Consensus 575 AP~K~mycvs 584 (600)
=|...|+=.-
T Consensus 360 FPqT~HvE~v 369 (374)
T TIGR02085 360 FPHTSHYEVL 369 (374)
T ss_pred CCCCCcEEEE
Confidence 4777766443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-16 Score=165.70 Aligned_cols=210 Identities=13% Similarity=0.189 Sum_probs=142.4
Q ss_pred cHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEecc--EEEEEecCeeeecChhHHHH--HHH
Q 007525 345 FKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHH--LSLFRCFDTIYWNSKLATER--QRL 420 (600)
Q Consensus 345 yk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG--~~F~vD~~kfy~n~Rl~tEr--~Ri 420 (600)
....+++.+.++. |.+ +|.++ .....+++|.+.+...+.-+| +.|++.+..|||.|+.++|. ..+
T Consensus 131 ~~~~~~~~l~~~~-~~~-~i~~~---------~~~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v 199 (362)
T PRK05031 131 EWEQAAKALRDAL-FNV-HLIGR---------SRKQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWA 199 (362)
T ss_pred HHHHHHHHHHHHC-CCc-EEEec---------CCCcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHH
Confidence 3455666677666 666 55222 112366789876544442245 89999999999999999988 344
Q ss_pred HhcCC-CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc---
Q 007525 421 LSGFN-FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK--- 496 (600)
Q Consensus 421 v~~l~-~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~--- 496 (600)
.+.+. .+..|||+|||+|.|++++|+...+|+|+|+++.|++.+++|++.|++++ ++++++|+.++++.+.....
T Consensus 200 ~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 200 LDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred HHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcccccc
Confidence 55443 23579999999999999999887899999999999999999999999985 99999999998865432100
Q ss_pred -------CCcccEEEeCCCcch--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceE
Q 007525 497 -------AHKITQVVMNLPNDA--TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVE 567 (600)
Q Consensus 497 -------~~~fD~VVmNpP~~a--~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~ 567 (600)
..+||.|++|||+.. .+.+..+.. +. .+|+|=|... .+..-+. .| ..++.
T Consensus 279 ~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~--------~ivyvSC~p~------tlarDl~-~L---~~gY~ 337 (362)
T PRK05031 279 LKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YE--------RILYISCNPE------TLCENLE-TL---SQTHK 337 (362)
T ss_pred cccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cC--------CEEEEEeCHH------HHHHHHH-HH---cCCcE
Confidence 125899999999964 234444332 21 3677766431 1111122 22 12466
Q ss_pred EEEeE--EecCCCcEEEEEEEe
Q 007525 568 MRRVR--LVAPGKWMLCASFVL 587 (600)
Q Consensus 568 v~~VR--~VAP~K~mycvsFrl 587 (600)
+..|. |.=|...|+=....|
T Consensus 338 l~~v~~~DmFPqT~HvE~v~lL 359 (362)
T PRK05031 338 VERFALFDQFPYTHHMECGVLL 359 (362)
T ss_pred EEEEEEcccCCCCCcEEEEEEE
Confidence 66666 444777776554433
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-16 Score=164.47 Aligned_cols=172 Identities=18% Similarity=0.285 Sum_probs=107.5
Q ss_pred EEeccEEEEEecCeeeecChhHHHH--HHHHhcCCC-CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFNF-KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~-ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNak 469 (600)
+.+.++.|++.+..|||.|..++|. ..+++.+.. +..|+|+|||+|.||+++|+++.+|+|+|+++.|++.|++|++
T Consensus 160 ~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHH
T ss_pred eeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHH
Confidence 3456899999999999999999998 455555442 3379999999999999999999999999999999999999999
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHh----------hcCCcccEEEeCCCcchH--HHHHHHHHHhcCCCCCCCCCccEEE
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFAS----------QKAHKITQVVMNLPNDAT--EFLDAFRGIYRDRPEDAKFTFPKIH 537 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~----------~~~~~fD~VVmNpP~~a~--eFLdaa~~lLk~~~~~g~~~~p~IH 537 (600)
.|+++| ++++++++.++...+... .....+|.||+|||+.+. .+++.+.+ + . -+|+
T Consensus 240 ~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~-~--~--------~ivY 307 (352)
T PF05958_consen 240 LNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK-L--K--------RIVY 307 (352)
T ss_dssp HTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH-S--S--------EEEE
T ss_pred HcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc-C--C--------eEEE
Confidence 999997 999999998775432100 012368999999999753 45554432 2 1 2566
Q ss_pred EEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEEE
Q 007525 538 LYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASFV 586 (600)
Q Consensus 538 vY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsFr 586 (600)
+=|.... +..-+. .|. +++.+..|. |.-|...|+=.-+-
T Consensus 308 vSCnP~t------laRDl~-~L~---~~y~~~~v~~~DmFP~T~HvE~v~l 348 (352)
T PF05958_consen 308 VSCNPAT------LARDLK-ILK---EGYKLEKVQPVDMFPQTHHVETVAL 348 (352)
T ss_dssp EES-HHH------HHHHHH-HHH---CCEEEEEEEEE-SSTTSS--EEEEE
T ss_pred EECCHHH------HHHHHH-HHh---hcCEEEEEEEeecCCCCCcEEEEEE
Confidence 6664321 111111 232 245555555 55588888755443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=154.45 Aligned_cols=185 Identities=11% Similarity=0.161 Sum_probs=128.4
Q ss_pred eeEEEecCCceEEEEEecc--EEEEEecCeeeecChhHHHH--HHHHhcCC-CCCeEEEEeeechHHHHHHhhCCCEEEE
Q 007525 379 QLEVLAGNNSLVTMLLFHH--LSLFRCFDTIYWNSKLATER--QRLLSGFN-FKDVVCDVFAGVGPICIPAAKIVKRVYA 453 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG--~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~-~ge~VLDlfAGvG~FaIpaAkkg~~V~A 453 (600)
...+++|.+.....+.-+| +.|.+++..|||.|..++|. ..+.+.+. .+..|||+|||+|.|++++|+.+.+|+|
T Consensus 145 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~ 224 (353)
T TIGR02143 145 KKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLA 224 (353)
T ss_pred CcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEE
Confidence 3466788865443332145 89999999999999988887 34555543 2457999999999999999998889999
Q ss_pred EeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh-h----c-----CCcccEEEeCCCcch--HHHHHHHHHH
Q 007525 454 NDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS-Q----K-----AHKITQVVMNLPNDA--TEFLDAFRGI 521 (600)
Q Consensus 454 vDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~-~----~-----~~~fD~VVmNpP~~a--~eFLdaa~~l 521 (600)
+|+++.|++.+++|++.|++++ ++++++|+.+++...... . . ...+|.|++|||+.. .+.++.+.+
T Consensus 225 vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~- 302 (353)
T TIGR02143 225 TEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA- 302 (353)
T ss_pred EECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc-
Confidence 9999999999999999999986 999999999987642110 0 0 123799999999864 344454433
Q ss_pred hcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEE
Q 007525 522 YRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASF 585 (600)
Q Consensus 522 Lk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsF 585 (600)
+. .+|+|=|-... ..+-+......+.+..|. |.=|...|+=.-.
T Consensus 303 --~~--------~ivYvsC~p~t----------laRDl~~L~~~Y~l~~v~~~DmFP~T~HvE~v~ 348 (353)
T TIGR02143 303 --YE--------RILYISCNPET----------LKANLEQLSETHRVERFALFDQFPYTHHMECGV 348 (353)
T ss_pred --CC--------cEEEEEcCHHH----------HHHHHHHHhcCcEEEEEEEcccCCCCCcEEEEE
Confidence 22 36777664321 111222222236666666 4457777765443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=163.75 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=113.6
Q ss_pred cceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH-HHHHh-c--CCCCCeEEEEeeechHHHHHHhhCCCEEE
Q 007525 377 TMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER-QRLLS-G--FNFKDVVCDVFAGVGPICIPAAKIVKRVY 452 (600)
Q Consensus 377 ~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr-~Riv~-~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~ 452 (600)
+..+.+++|+..+.+.+ .|++|+|++..|||+|..++|. ...+. . +..+..++|+|||+|.|++.+|++..+|+
T Consensus 332 ~~~~~l~~~~~~I~E~l--~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~Vi 409 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESL--LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVI 409 (534)
T ss_pred CCCeEEEccccEEEeec--CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccccee
Confidence 46899999988777777 9999999999999999999998 44443 2 67889999999999999999999999999
Q ss_pred EEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc-EEEeCCCcchH
Q 007525 453 ANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT-QVVMNLPNDAT 512 (600)
Q Consensus 453 AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD-~VVmNpP~~a~ 512 (600)
++|++|+|+++|++||+.||++| .++++|-+.+.+..++.. ....-+ ++|+|||+.+.
T Consensus 410 GvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~-~~~~~~~v~iiDPpR~Gl 468 (534)
T KOG2187|consen 410 GVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP-CCDSETLVAIIDPPRKGL 468 (534)
T ss_pred eeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc-CCCCCceEEEECCCcccc
Confidence 99999999999999999999997 999999998888776532 112345 78999999764
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=157.45 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=121.6
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN 471 (600)
+|+.|++.+..|||.|+.++|. ..+++. ..++++|||+|||+|.+++.+|+.+.+|+|+|+|+.|++.+++|++.|
T Consensus 263 ~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~ 342 (443)
T PRK13168 263 FGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRN 342 (443)
T ss_pred CCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 7999999999999999998887 445554 457889999999999999999999899999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchh
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFD 550 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~d 550 (600)
++++ ++++++|+.+.+....- ....||.|++|||+... +.+..+.+ +++. .+|++=|.... ...|
T Consensus 343 ~~~~-v~~~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~--------~ivyvSCnp~t--laRD 408 (443)
T PRK13168 343 GLDN-VTFYHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPK--------RIVYVSCNPAT--LARD 408 (443)
T ss_pred CCCc-eEEEEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCC--------eEEEEEeChHH--hhcc
Confidence 9986 99999999887643110 13569999999999743 44443333 2222 35555553221 1112
Q ss_pred HHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEEE
Q 007525 551 FHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASFV 586 (600)
Q Consensus 551 i~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsFr 586 (600)
+ . .|.+ .++.+..|+ |.-|...|+=.-..
T Consensus 409 l----~-~L~~--~gY~l~~i~~~DmFP~T~HvE~v~l 439 (443)
T PRK13168 409 A----G-VLVE--AGYRLKRAGMLDMFPHTGHVESMAL 439 (443)
T ss_pred H----H-HHhh--CCcEEEEEEEeccCCCCCcEEEEEE
Confidence 1 1 2211 235556555 45577777754443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=156.18 Aligned_cols=119 Identities=25% Similarity=0.365 Sum_probs=98.1
Q ss_pred eeeecChhHHHHH---HHHhcCC---CCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 406 TIYWNSKLATERQ---RLLSGFN---FKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 406 kfy~n~Rl~tEr~---Riv~~l~---~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
.+||++....+|. .+++.+. ++.+|||+|||+|.+++.+|+. + .+|+++|+||.|++.+++|+++|++++ +
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~ 109 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-E 109 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-e
Confidence 5788887777774 4444443 3468999999999999999875 3 399999999999999999999999986 8
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
+++++|+.+++.. ...||+|++|||....+|++.+...++++ ++||+.
T Consensus 110 ~v~~~Da~~~l~~------~~~fD~V~lDP~Gs~~~~l~~al~~~~~~--------gilyvS 157 (382)
T PRK04338 110 KVFNKDANALLHE------ERKFDVVDIDPFGSPAPFLDSAIRSVKRG--------GLLCVT 157 (382)
T ss_pred EEEhhhHHHHHhh------cCCCCEEEECCCCCcHHHHHHHHHHhcCC--------CEEEEE
Confidence 8999999988742 24699999999977789999988888765 477776
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=155.20 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=109.7
Q ss_pred EeccEEEEEe-cCeeeecChhHHHHHHHH---h---cCCCC---CeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHH
Q 007525 394 LFHHLSLFRC-FDTIYWNSKLATERQRLL---S---GFNFK---DVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYA 460 (600)
Q Consensus 394 kEnG~~F~vD-~~kfy~n~Rl~tEr~Riv---~---~l~~g---e~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~A 460 (600)
+|+..+|.+. -..+|+|++....|...+ + ...++ -+|||+|||+|.+||.+++. | .+|++||+||.|
T Consensus 2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A 81 (374)
T TIGR00308 2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA 81 (374)
T ss_pred ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 5677777763 246899999888884322 1 12333 38999999999999999997 5 499999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 461 VDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 461 ve~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
++.+++|+++|++++ ++++++|+..++... ..+||+|.+||+.+...|++.+...++++ +++++.+
T Consensus 82 v~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~-----~~~fDvIdlDPfGs~~~fld~al~~~~~~--------glL~vTa 147 (374)
T TIGR00308 82 VESIKNNVEYNSVEN-IEVPNEDAANVLRYR-----NRKFHVIDIDPFGTPAPFVDSAIQASAER--------GLLLVTA 147 (374)
T ss_pred HHHHHHHHHHhCCCc-EEEEchhHHHHHHHh-----CCCCCEEEeCCCCCcHHHHHHHHHhcccC--------CEEEEEe
Confidence 999999999999985 999999999998642 35799999999877679999999999865 5888886
Q ss_pred cc
Q 007525 541 FS 542 (600)
Q Consensus 541 F~ 542 (600)
-.
T Consensus 148 TD 149 (374)
T TIGR00308 148 TD 149 (374)
T ss_pred cc
Confidence 43
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-14 Score=123.04 Aligned_cols=95 Identities=28% Similarity=0.382 Sum_probs=82.1
Q ss_pred CCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
|.+|+|+|||+|.+++.+++.+ .+|+++|+||.+++.++.|+..+++.++++++++|+.+....+ ...+||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEEEE
Confidence 5789999999999999999998 8999999999999999999999999878999999999887332 2578999999
Q ss_pred CCCcch------------HHHHHHHHHHhcCC
Q 007525 506 NLPNDA------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP~~a------------~eFLdaa~~lLk~~ 525 (600)
|||+.. ..|++.+.++++++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 999862 47899999999986
|
... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=126.11 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=82.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.++.++ .+|+++|+++++++.+++|++.|++++ ++++++|+.+++.. ....||+|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~-----~~~~fDlV 125 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQ-----PGTPHNVV 125 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhh-----cCCCceEE
Confidence 467899999999999999766554 699999999999999999999999875 99999999887642 13469999
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++|||+.. .+...+...+....+- .+-++|+|-+..+
T Consensus 126 ~~DPPy~~-g~~~~~l~~l~~~~~l--~~~~iv~ve~~~~ 162 (199)
T PRK10909 126 FVDPPFRK-GLLEETINLLEDNGWL--ADEALIYVESEVE 162 (199)
T ss_pred EECCCCCC-ChHHHHHHHHHHCCCc--CCCcEEEEEecCC
Confidence 99999632 3445555555443110 1124666655544
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=133.90 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=84.8
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHh-cC--CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLS-GF--NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~-~l--~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNa 468 (600)
.|..|.+++..++ +|-.+|- ...+. .+ .++.+|||+|||+|.+++.+|+. +.+|+|+|+|+.+++.+++|+
T Consensus 88 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 88 AGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred cCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 6889999986544 4544444 22332 23 34578999999999999999986 469999999999999999999
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+.|++.++++++++|+.+.+. ..+||.|++|||+.
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~-------~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALP-------GRKYDLIVSNPPYV 200 (284)
T ss_pred HHcCCCCcEEEEECchhhccC-------CCCccEEEECCCCC
Confidence 999998779999999876542 34799999999984
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=124.88 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=78.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-+|.+|||+|||+|.+++.|+++|+ +|+++|+++.|++.+++|++.|++.++++++++|+.+++..+.. ....+|+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~--~~~~~dvv 125 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK--KPTFDNVI 125 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc--cCCCceEE
Confidence 3689999999999999999999986 89999999999999999999999987799999999888765321 12348999
Q ss_pred EeCCCcchHHHHHHHHHHhc
Q 007525 504 VMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk 523 (600)
++|||+.. .....+..++.
T Consensus 126 ~~DPPy~~-~~~~~~l~~l~ 144 (189)
T TIGR00095 126 YLDPPFFN-GALQALLELCE 144 (189)
T ss_pred EECcCCCC-CcHHHHHHHHH
Confidence 99999964 34444444443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=122.57 Aligned_cols=92 Identities=29% Similarity=0.333 Sum_probs=78.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++..|||+|||+|.+++.+++++. +|+++|+|+.|++.+++|++.|++++ +++++.|..+.+. ..+||.|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-------~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-------DGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-------TTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-------ccceeEE
Confidence 678999999999999999999863 69999999999999999999999998 9999999987652 4689999
Q ss_pred EeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 504 VMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
++|||.. ..+|+..+.+.|+++
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 9999973 246788889999886
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=127.19 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-+|.+|||+|||+|.+++.|+++|+ +|+.||.|+.++..+++|++.-++.++++++++|+..++.++.. ...+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~--~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK--KGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH--CTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc--cCCCceEE
Confidence 3689999999999999999999985 99999999999999999999999988899999999999876532 25789999
Q ss_pred EeCCCcchHHHHHHHHHHhc
Q 007525 504 VMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk 523 (600)
++|||+.....+..+...+.
T Consensus 119 flDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 119 FLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp EE--STTSCHHHHHHHHHHH
T ss_pred EECCCcccchHHHHHHHHHH
Confidence 99999975443344444443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=127.85 Aligned_cols=116 Identities=20% Similarity=0.105 Sum_probs=87.5
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCC---CCCeEEEEeeechHHHHHHhhC--CCEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFN---FKDVVCDVFAGVGPICIPAAKI--VKRV 451 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~---~ge~VLDlfAGvG~FaIpaAkk--g~~V 451 (600)
++.+|-|.. .+ .|..|.+++..| + |+-.+|. +.++..+. .+.+|+|+|||+|.+++.+++. +.+|
T Consensus 42 Pl~yi~g~~----~f--~g~~~~v~~~vf-~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v 113 (251)
T TIGR03704 42 PLEHVLGWA----EF--CGLRIAVDPGVF-V-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIEL 113 (251)
T ss_pred CHHHhcccC----eE--cCeEEEECCCCc-C-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEE
Confidence 344555653 23 788999999754 4 6667776 33333332 3458999999999999999875 4699
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 452 YANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 452 ~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+|+|+|+.|++.+++|++.|++ +++++|+.+.+.... ..+||.||+|||+.
T Consensus 114 ~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~----~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 114 HAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTAL----RGRVDILAANAPYV 164 (251)
T ss_pred EEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhc----CCCEeEEEECCCCC
Confidence 9999999999999999999873 689999987654321 24799999999984
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=128.72 Aligned_cols=144 Identities=20% Similarity=0.289 Sum_probs=107.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.....+|||+|||+|..++.+|++ . ++|+|||+.+++++.|++|+++|+++.+|+++++|..++.+... ..+||
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~----~~~fD 117 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV----FASFD 117 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----ccccC
Confidence 344789999999999999999998 4 69999999999999999999999999999999999999976532 34699
Q ss_pred EEEeCCCcch----------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHH
Q 007525 502 QVVMNLPNDA----------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIAL 559 (600)
Q Consensus 502 ~VVmNpP~~a----------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L 559 (600)
+||||||+.. .+++..+..+++++ | .+.+|| . .+|+.+.+
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~---G--~l~~V~------r-------~erl~ei~ 179 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG---G--RLAFVH------R-------PERLAEII 179 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC---C--EEEEEe------c-------HHHHHHHH
Confidence 9999999841 25788888888876 2 122232 1 12333222
Q ss_pred hhcc-cceEEEEeEEecCCC----cEEEEEEEecc
Q 007525 560 VEVA-VNVEMRRVRLVAPGK----WMLCASFVLPE 589 (600)
Q Consensus 560 ~~~~-~~~~v~~VR~VAP~K----~mycvsFrlp~ 589 (600)
.... ..++..++..|.|.. .++-+.++...
T Consensus 180 ~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 180 ELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred HHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 1111 246677788888876 45666666543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-12 Score=130.69 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=90.0
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHh-cCCC-C-CeEEEEeeechHHHHHHhhC--CCEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLS-GFNF-K-DVVCDVFAGVGPICIPAAKI--VKRV 451 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~-~l~~-g-e~VLDlfAGvG~FaIpaAkk--g~~V 451 (600)
++.+|.|... + .|..|++++.. |+ +|-.+|. ..++. .+.. + .+|||+|||+|.+++.+|+. +.+|
T Consensus 89 Pl~yi~g~~~----F--~g~~f~v~~~v-li-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V 160 (307)
T PRK11805 89 PAAYLTNEAW----F--CGLEFYVDERV-LV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEV 160 (307)
T ss_pred cHHHHcCcce----E--cCcEEEECCCC-cC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEE
Confidence 3444556532 3 68899999865 55 5655554 22232 2332 2 68999999999999999986 4699
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 452 YANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 452 ~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+|+|+|+.+++.+++|++.|++.++++++++|+.+.+. ..+||.|++|||+.
T Consensus 161 ~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-------~~~fDlIvsNPPyi 212 (307)
T PRK11805 161 DAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-------GRRYDLIVSNPPYV 212 (307)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-------CCCccEEEECCCCC
Confidence 99999999999999999999998789999999876542 34799999999984
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=124.98 Aligned_cols=87 Identities=30% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-.|.+|+|+|||+|.+|+.++..| ++|+|+|++|+|++.+++|+..+ .++|+++++|+.++ ...+|.|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~---------~~~~dtv 112 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF---------RGKFDTV 112 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc---------CCccceE
Confidence 367899999999999999999998 59999999999999999999983 33599999999987 3579999
Q ss_pred EeCCCcch------HHHHHHHHHHh
Q 007525 504 VMNLPNDA------TEFLDAFRGIY 522 (600)
Q Consensus 504 VmNpP~~a------~eFLdaa~~lL 522 (600)
|||||..+ ..||+.|.++-
T Consensus 113 imNPPFG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 113 IMNPPFGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred EECCCCccccccCCHHHHHHHHHhh
Confidence 99999864 48999998875
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8e-12 Score=129.45 Aligned_cols=104 Identities=25% Similarity=0.163 Sum_probs=83.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcCCCCC-eEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGFNFKD-VVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~ge-~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNakl 470 (600)
.|+.|.++... | .||..||. ..++....... .|+|+|||+|.+|+.+|+.+. .|+|+|+||+|++.+++|++.
T Consensus 79 ~gl~~~v~~~v-l-iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 79 GGLRFKVDEGV-L-IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cceeeeeCCCc-e-ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 78888888764 3 47878886 33332333333 799999999999999999864 999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|++. ++.++++|.++-++ ++||.||.|||+-
T Consensus 157 ~~l~-~~~~~~~dlf~~~~--------~~fDlIVsNPPYi 187 (280)
T COG2890 157 NGLV-RVLVVQSDLFEPLR--------GKFDLIVSNPPYI 187 (280)
T ss_pred cCCc-cEEEEeeecccccC--------CceeEEEeCCCCC
Confidence 9994 47777778877652 4899999999983
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=125.13 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=85.7
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcC--C-CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGF--N-FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l--~-~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa 468 (600)
.|..|.+++.. |. ||..+|. ..+++.+ . ++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.+++|+
T Consensus 81 ~g~~f~v~~~v-li-Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 81 YGLEFFVNEHV-LI-PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred cCeEEEECCCC-cC-CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 68889999874 43 7777776 3333332 2 22689999999999999999863 69999999999999999999
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+.|++.++++++++|+.+.+. ..+||.||+|||+.
T Consensus 159 ~~~~~~~~v~~~~~d~~~~~~-------~~~fDlIvsNPPyi 193 (284)
T TIGR00536 159 EKNQLEHRVEFIQSNLFEPLA-------GQKIDIIVSNPPYI 193 (284)
T ss_pred HHcCCCCcEEEEECchhccCc-------CCCccEEEECCCCC
Confidence 999998779999999876431 23799999999984
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=118.32 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=92.7
Q ss_pred ccccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcC----CCCCeEEEEeeechHHHHHHh
Q 007525 370 AIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGF----NFKDVVCDVFAGVGPICIPAA 445 (600)
Q Consensus 370 ~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l----~~ge~VLDlfAGvG~FaIpaA 445 (600)
.|.|++|+..+.+..|...- |....-|+.+.+.+ -.|.++||+|||+|..++.|+
T Consensus 4 Ii~G~~kgr~L~~p~~~~~R---------------------PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAl 62 (187)
T COG0742 4 IIGGKYKGRKLKTPDGPGTR---------------------PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEAL 62 (187)
T ss_pred EEeccccCCcccCCCCCCcC---------------------CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHH
Confidence 35677777777777664321 11112233344433 458999999999999999999
Q ss_pred hCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHH
Q 007525 446 KIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFL 515 (600)
Q Consensus 446 kkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFL 515 (600)
++|+ +|+.+|.|..++..+++|++.-++..+++++.+|+..+++++.. ...||.|++|||+. .+.+
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---~~~FDlVflDPPy~-~~l~ 129 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---REPFDLVFLDPPYA-KGLL 129 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC---CCcccEEEeCCCCc-cchh
Confidence 9986 99999999999999999999999888899999999988766431 23599999999996 4444
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=118.33 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++++|||+|||+|.+++.+++.+. +|+++|+|+.+++.+++|++.+++. ++++++|+.+.+. ...||.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~-------~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVE-------FRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhcc-------CCCeeE
Confidence 56789999999999999999999875 9999999999999999999999883 8899999876532 357999
Q ss_pred EEeCCCcch-------------------------HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-------------------------~eFLdaa~~lLk~~ 525 (600)
|++|||+.. ..+++.+.+.++++
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 999999641 23667778888876
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-11 Score=129.06 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=92.4
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYAN 454 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~Av 454 (600)
++..|-|... . .|..|.+++..+. ||..+|. +.+++.+.++.+|||+|||+|.+++.+++. +++|+|+
T Consensus 210 PlqYIlG~~~----F--~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAV 281 (423)
T PRK14966 210 PVAYILGVRE----F--YGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRAS 281 (423)
T ss_pred CceeEeeeee----e--cCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEE
Confidence 4555666532 3 7889999988543 8888887 445555667789999999999999999874 5799999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|+|+.|++.+++|++.|++ +++++++|..+... . ...+||.|++|||+.
T Consensus 282 DiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l--~---~~~~FDLIVSNPPYI 330 (423)
T PRK14966 282 DISPPALETARKNAADLGA--RVEFAHGSWFDTDM--P---SEGKWDIIVSNPPYI 330 (423)
T ss_pred ECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccc--c---cCCCccEEEECCCCC
Confidence 9999999999999999986 49999999866421 0 124799999999983
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=118.77 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=109.0
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcC
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNg 472 (600)
+|++.+=.. +.+.+..-... ++. .++|++|||.|.|-|++||.++++|+ .|+.+|.||..++.+.-|--.-+
T Consensus 107 dGIrMhrt~----~tdP~~Dt~~K-v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~ 181 (287)
T COG2521 107 DGIRMHRTK----GTDPLEDTLAK-VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRE 181 (287)
T ss_pred ccEEEeccc----CcCcHHHHHhh-hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcc
Confidence 898887322 22332222222 223 56799999999999999999999998 99999999999999887754444
Q ss_pred CC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 473 LE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 473 l~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+. -.++++.||+.++++.+. +++||.||-|||+++ .+|.+++.++|+++ | ..+|+-.....
T Consensus 182 l~~~~i~iilGD~~e~V~~~~----D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg---G----rlFHYvG~Pg~ 250 (287)
T COG2521 182 LFEIAIKIILGDAYEVVKDFD----DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG---G----RLFHYVGNPGK 250 (287)
T ss_pred ccccccEEecccHHHHHhcCC----ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC---C----cEEEEeCCCCc
Confidence 42 248999999999998753 578999999999974 58999999999987 3 47887654432
Q ss_pred CCCchhHHHHHHHHHhh
Q 007525 545 RDPEFDFHERIRIALVE 561 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~ 561 (600)
.--..++...+.+.|..
T Consensus 251 ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 251 RYRGLDLPKGVAERLRR 267 (287)
T ss_pred ccccCChhHHHHHHHHh
Confidence 11122555666655543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-11 Score=120.60 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|.. ...|+|+|+++.+++.+++|++.+++.+ |+++++|+..+... ...|
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~------~~~f 141 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAA------VPKF 141 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhh------ccCC
Confidence 568999999999999999998874 3589999999999999999999999986 99999999876321 3469
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|+|++|||.+. .++|..+.++++++
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999763 24778888888876
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=103.03 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+|.+|||+|||+|.+++.+++ .+++|+|+|++|++++.+++|+..++..++++++++|+ ..... ....||.|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----FLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----TSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----cCCCCCEE
Confidence 578999999999999999999 68899999999999999999998888888899999999 33211 24579999
Q ss_pred EeCC-Cc---c----hHHHHHHHHHHhcCC
Q 007525 504 VMNL-PN---D----ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNp-P~---~----a~eFLdaa~~lLk~~ 525 (600)
+++. -. . ..++++.+.+.++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 9977 11 1 135788889999886
|
... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=112.02 Aligned_cols=101 Identities=27% Similarity=0.343 Sum_probs=83.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|+|+|||+|.+++.+++.+.+|+++|+||++++.+++|++.|++. ++++++|+.+.. ..+||.|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~--------~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV--------RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc--------CCcccEEE
Confidence 45678999999999999999998889999999999999999999999873 899999987643 24799999
Q ss_pred eCCCcc-------------------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 505 MNLPND-------------------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 505 mNpP~~-------------------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|||.. ...+++.+.++++++ |++.++....
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g--------G~~~~~~~~~ 143 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG--------GRVQLIQSSL 143 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC--------CEEEEEEecc
Confidence 999973 135788888888876 4666665444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=124.59 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=83.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+++|+.|+|+|||+|.+++.++..|..|+|+|+|+.+++.++.|++.+++.+ +.++++|+.+... ....||.|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCEE
Confidence 6789999999999999999999999999999999999999999999999987 8999999987531 13579999
Q ss_pred EeCCCcch-------------HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA-------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a-------------~eFLdaa~~lLk~~ 525 (600)
++|||+.. .+++..+.+.|+++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 99999731 35788888888876
|
This family is found exclusively in the Archaea. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=113.49 Aligned_cols=105 Identities=23% Similarity=0.190 Sum_probs=81.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcCC-CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGFN-FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~-~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl 470 (600)
.|.+|.++...+ .++..++. ..+++.+. .+.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.
T Consensus 56 ~~~~~~~~~~~~--~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 56 YGLDFKVSPGVL--IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred eceEEEECCCcc--cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 455666665533 24444443 34444443 3458999999999999999986 46999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+++.+ ++++++|+.+.. ..++||.|++|||+.
T Consensus 134 ~~~~~-~~~~~~d~~~~~-------~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 134 LGLDN-VTFLQSDWFEPL-------PGGKFDLIVSNPPYI 165 (251)
T ss_pred cCCCe-EEEEECchhccC-------cCCceeEEEECCCCC
Confidence 99974 999999987643 146799999999975
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=117.65 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=90.0
Q ss_pred EEeccEEEEEecCeeeecChhHHHHHHHHhcCCC--CCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNF--KDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~--ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa 468 (600)
+.+.+++|.-.++ ||=-.++..=-+-+++.+.. +.+|||+|||+|.+++.+++++ .+|+++|+|+.|++.+++|+
T Consensus 194 ~~~~~~~~~~~~g-VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 194 LEGTDWTIHNHAN-VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred EcCceEEEEecCC-ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3334445544444 33222332111234444432 4689999999999999999873 69999999999999999999
Q ss_pred HHcCCC--CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 469 VLNKLE--KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 469 klNgl~--nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
+.|+.. .+++++.+|+.+.+. ..+||.|++|||.. +.+++..+.+.|+++
T Consensus 273 ~~n~~~~~~~v~~~~~D~l~~~~-------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 273 ETNMPEALDRCEFMINNALSGVE-------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred HHcCcccCceEEEEEccccccCC-------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 999864 258999999865431 35799999999974 246788888888876
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=110.53 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|+|+|||+|.+++.+|+. +.+|+|+|+++.+++.+++|++.+++.++++++++|+.+++... ...|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----NEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----CCCC
Confidence 668999999999999999999874 35999999999999999999999997556999999998876431 3579
Q ss_pred cEEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
|+|+++... ....+++.+.++++++
T Consensus 113 D~V~~~~~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 113 DRIFIGGGSEKLKEIISASWEIIKKG 138 (198)
T ss_pred CEEEECCCcccHHHHHHHHHHHcCCC
Confidence 999997643 2357889999999876
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=116.59 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=102.6
Q ss_pred eccEEEEEecCeeeecChhHHHH--HHHH-hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 395 FHHLSLFRCFDTIYWNSKLATER--QRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~Rl~tEr--~Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNakl 470 (600)
++.....+|+...|-.-...+.+ .+++ ....++++|||+|||+|.+++.+++.|. +|+|+|+++.+++.+++|++.
T Consensus 125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 35677889999888765444443 2222 2356789999999999999999998875 899999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++.+++.++.+|.... ...+||.|++|..... ..++..+.++++++ |++.+-.+..
T Consensus 205 n~~~~~~~~~~~~~~~~--------~~~~fDlVvan~~~~~l~~ll~~~~~~Lkpg--------G~li~sgi~~ 262 (288)
T TIGR00406 205 NQVSDRLQVKLIYLEQP--------IEGKADVIVANILAEVIKELYPQFSRLVKPG--------GWLILSGILE 262 (288)
T ss_pred cCCCcceEEEecccccc--------cCCCceEEEEecCHHHHHHHHHHHHHHcCCC--------cEEEEEeCcH
Confidence 99987788888773322 1357999999986543 36788889999886 5777666543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=117.87 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=91.3
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN 471 (600)
.+++|.-+++-|=++ ++..=-+-+++.+ ..+..|+|+|||.|++++.+|+.. .+|+.+|+|..|++.+++|++.|
T Consensus 127 ~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 127 HELTFKTLPGVFSRD-KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred CceEEEeCCCCCcCC-CcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 456666666544333 2211112344432 234599999999999999999985 59999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------HHHHHHHHHHhcCC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------TEFLDAFRGIYRDR 525 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------~eFLdaa~~lLk~~ 525 (600)
++++. +++..|..+-+. ++||.||||||..+ .+++..+.+.|+++
T Consensus 206 ~~~~~-~v~~s~~~~~v~--------~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 206 GVENT-EVWASNLYEPVE--------GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred CCCcc-EEEEeccccccc--------ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 99974 788888877652 37999999999852 37888999999876
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=114.47 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=92.5
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHH-hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
+.+..++||+-.|=.-...|-+ .+.+ +...+|.+|+|+|||+|-+||.+++.|+ +|+|+|++|.|++.+++|+++|
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc
Confidence 4567888888766544433333 1222 3477999999999999999999999986 7999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
++...+..-..+..+.+ ..++||+||.|--+.. ..+.+.+.+.++++
T Consensus 209 ~v~~~~~~~~~~~~~~~-------~~~~~DvIVANILA~vl~~La~~~~~~lkpg 256 (300)
T COG2264 209 GVELLVQAKGFLLLEVP-------ENGPFDVIVANILAEVLVELAPDIKRLLKPG 256 (300)
T ss_pred CCchhhhcccccchhhc-------ccCcccEEEehhhHHHHHHHHHHHHHHcCCC
Confidence 99853333333333332 1358999999986543 36778889999886
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=129.43 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=92.5
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCC--------------------------CCCeE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFN--------------------------FKDVV 430 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~--------------------------~ge~V 430 (600)
++.+|.|.. .. .|..|.+++.- +.||-.||- +.+++.+. ++.+|
T Consensus 71 PlqYI~G~~----~F--~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 142 (506)
T PRK01544 71 PIAYITGVK----EF--YSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNI 142 (506)
T ss_pred CHHHHhCcC----EE--cCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEE
Confidence 444556653 24 78999999875 568888887 33333221 34689
Q ss_pred EEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC
Q 007525 431 CDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP 508 (600)
||+|||+|.+++.+|+. +.+|+|+|+|+.|++.+++|++.|++.+++.++++|+.+.+. ..+||.||+|||
T Consensus 143 LDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlIvsNPP 215 (506)
T PRK01544 143 LELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFIVSNPP 215 (506)
T ss_pred EEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEEEECCC
Confidence 99999999999998875 469999999999999999999999998789999999876431 357999999999
Q ss_pred cc
Q 007525 509 ND 510 (600)
Q Consensus 509 ~~ 510 (600)
+.
T Consensus 216 Yi 217 (506)
T PRK01544 216 YI 217 (506)
T ss_pred CC
Confidence 74
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-10 Score=118.18 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=98.5
Q ss_pred EEeccEEEEEecCeeeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa 468 (600)
..-.++.+...+..|.++.-...-+ .+++.+ ....+|||+|||.|.+++.+++++ .+|+++|+|+.|++.+++|+
T Consensus 162 y~~~~l~i~~~pgvFs~~~lD~gt~-lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 162 YQVDGLTVKTLPGVFSRDGLDVGSQ-LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL 240 (342)
T ss_pred eecCCEEEEeCCCCCCCCCCCHHHH-HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3335677888887777754433222 233322 234589999999999999999874 59999999999999999999
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND---------ATEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
+.|++. .+++.+|+.+.+ .++||.||+|||.. ...++..+.+.|+++ |.+.+.
T Consensus 241 ~~n~l~--~~~~~~D~~~~~--------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg--------G~L~iV 302 (342)
T PRK09489 241 AANGLE--GEVFASNVFSDI--------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG--------GELRIV 302 (342)
T ss_pred HHcCCC--CEEEEccccccc--------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC--------CEEEEE
Confidence 999986 467888876532 35799999999974 257889999999986 467666
Q ss_pred ecc
Q 007525 540 GFS 542 (600)
Q Consensus 540 ~F~ 542 (600)
...
T Consensus 303 an~ 305 (342)
T PRK09489 303 ANA 305 (342)
T ss_pred EeC
Confidence 543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-11 Score=122.36 Aligned_cols=131 Identities=26% Similarity=0.270 Sum_probs=96.3
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHH-hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
+.+...+||+..|=.-...|-+ .+++ +...+|++|||+|||+|.+||.|++.|+ +|+|+|++|.|++.+++|+++|
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence 5567889999888776666555 2233 3477899999999999999999999986 8999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
++.+++.+. ...+. ...+||+|+.|.-+.. ...++.+.++++++ |++-+=.+-.+
T Consensus 208 ~~~~~~~v~--~~~~~--------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~--------G~lIlSGIl~~ 263 (295)
T PF06325_consen 208 GVEDRIEVS--LSEDL--------VEGKFDLVVANILADVLLELAPDIASLLKPG--------GYLILSGILEE 263 (295)
T ss_dssp T-TTCEEES--CTSCT--------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEE--------EEEEEEEEEGG
T ss_pred CCCeeEEEE--Eeccc--------ccccCCEEEECCCHHHHHHHHHHHHHhhCCC--------CEEEEccccHH
Confidence 999877653 11222 1367999999987654 35667778888875 46666555443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-10 Score=108.62 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=86.9
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+.++.+|||+|||+|.+++.+|+. +++|+|+|+++.+++.+++|++.+++++ ++++++|+.++.. .++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~ 112 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEK 112 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCC
Confidence 44667899999999999999999863 5799999999999999999999999987 9999999987531 357
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
||.|+++--.....++..+.+.++++ |++.+..+.
T Consensus 113 fDlV~~~~~~~~~~~l~~~~~~LkpG--------G~lv~~~~~ 147 (187)
T PRK00107 113 FDVVTSRAVASLSDLVELCLPLLKPG--------GRFLALKGR 147 (187)
T ss_pred ccEEEEccccCHHHHHHHHHHhcCCC--------eEEEEEeCC
Confidence 99999985434467889999999987 466655433
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-11 Score=113.95 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=62.8
Q ss_pred CeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
++|+|+|||+|+-+|..|+.+.+|+|+|+||.-++.+++|++.-|+.++|+++++|..+.+..+.. ...+|.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEEECC
Confidence 479999999999999999999999999999999999999999999998999999999998754221 11289999999
Q ss_pred CcchHH
Q 007525 508 PNDATE 513 (600)
Q Consensus 508 P~~a~e 513 (600)
|-...+
T Consensus 78 PWGGp~ 83 (163)
T PF09445_consen 78 PWGGPS 83 (163)
T ss_dssp -BSSGG
T ss_pred CCCCcc
Confidence 986533
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=110.15 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++.+|||+|||+|.+++.+|..+ ++|+|+|+|+.+++.+++|++.+++++ ++++++|+.++. ...+||.|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~-------~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQ-------HEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhcc-------ccCCccEE
Confidence 48899999999999999988753 689999999999999999999999976 999999998752 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++.-.....++..+.++++++
T Consensus 114 ~s~~~~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 114 TSRALASLNVLLELTLNLLKVG 135 (181)
T ss_pred EehhhhCHHHHHHHHHHhcCCC
Confidence 9986333456778888888876
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=110.34 Aligned_cols=148 Identities=15% Similarity=0.052 Sum_probs=96.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++|||+|||+|.+++.+|+.. .+|+|+|+++++++.+.++++.. . +|.++.+|+.+.... . .....||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~-nv~~i~~D~~~~~~~-~--~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K-NIIPILADARKPERY-A--HVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C-CcEEEECCCCCcchh-h--hccccCC
Confidence 5689999999999999999999873 58999999999999999888753 4 489999998752110 0 0124699
Q ss_pred EEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEE-EeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCCC
Q 007525 502 QVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHL-YGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGK 578 (600)
Q Consensus 502 ~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHv-Y~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K 578 (600)
.|+.|.+. ....++..+.++|+++ |++-+ ..+.. .+...+. .|..+.....++..++..++.+....
T Consensus 144 ~i~~d~~~p~~~~~~L~~~~r~LKpG--------G~lvI~v~~~~-~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 144 VIYQDVAQPNQAEIAIDNAEFFLKDG--------GYLLLAIKARS-IDVTKDP-KEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred EEEECCCChhHHHHHHHHHHHhcCCC--------cEEEEEEeccc-ccCcCCH-HHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 99987754 2235688999999987 34433 11211 1111111 12222222333334555555555554
Q ss_pred c---EEEEEEEe
Q 007525 579 W---MLCASFVL 587 (600)
Q Consensus 579 ~---mycvsFrl 587 (600)
+ ||++.++.
T Consensus 214 ~~~~h~~~v~~~ 225 (226)
T PRK04266 214 YHKDHAAVVARK 225 (226)
T ss_pred CcCCeEEEEEEc
Confidence 5 99998874
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-09 Score=99.96 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.+++.+ ++|+++|+|+.+++.+++|++.+++.+ ++++++|+...+ ...||
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~--------~~~~D 99 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIEL--------PGKAD 99 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhc--------CcCCC
Confidence 4678999999999999999999863 699999999999999999999999875 999999975322 24799
Q ss_pred EEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
.|+++... ...++++.+.+.|+++
T Consensus 100 ~v~~~~~~~~~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 100 AIFIGGSGGNLTAIIDWSLAHLHPG 124 (187)
T ss_pred EEEECCCccCHHHHHHHHHHhcCCC
Confidence 99998643 2456888888888876
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=108.26 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=80.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNak 469 (600)
.|..|.++... | .+|..+|. ..++.. ..++.+|+|+|||+|.+++.+++.. .+|+|+|+++.+++.+++|++
T Consensus 76 ~~~~~~~~~~~-l-ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 76 WGLDFKVSPGV-L-IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cCcEEEECCCc-e-eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 46677777653 2 46666665 333322 3467899999999999999999874 699999999999999999999
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++..+++.++++|+.+.+. ..+||+|++|||+.
T Consensus 154 -~~~~~~i~~~~~d~~~~~~-------~~~fD~Iv~npPy~ 186 (275)
T PRK09328 154 -HGLGARVEFLQGDWFEPLP-------GGRFDLIVSNPPYI 186 (275)
T ss_pred -hCCCCcEEEEEccccCcCC-------CCceeEEEECCCcC
Confidence 4444469999999855321 35799999999985
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=106.17 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=84.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++++|||+|||+|.+++.+|+. +++|+|+|+||++++.+++|++.+++.+ ++++++|+.+.+..+ ...+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~-----~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECLAQL-----APAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHHhhC-----CCCCC
Confidence 457899999999999999999864 4799999999999999999999999975 999999998755331 23468
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
.++++.......++..+.+.++++ |.+-++..
T Consensus 112 ~v~~~~~~~~~~~l~~~~~~Lkpg--------G~li~~~~ 143 (196)
T PRK07402 112 RVCIEGGRPIKEILQAVWQYLKPG--------GRLVATAS 143 (196)
T ss_pred EEEEECCcCHHHHHHHHHHhcCCC--------eEEEEEee
Confidence 888876544467899999999876 46666654
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-10 Score=118.55 Aligned_cols=123 Identities=22% Similarity=0.290 Sum_probs=101.1
Q ss_pred eeecChhHHHHHHHH---hcCC-C-CCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEE
Q 007525 407 IYWNSKLATERQRLL---SGFN-F-KDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEV 479 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv---~~l~-~-ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~ 479 (600)
||+|++.+-.|.-.+ +.+. . ..+|+|.+||+|.=+|.+|.. +. +|+++|+||.|++.+++|+++|...+ ..+
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v 106 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEV 106 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-cee
Confidence 899999887774322 2222 1 678999999999999999986 44 89999999999999999999997665 788
Q ss_pred EEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 480 FNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 480 i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++|+..++.+. ...||+|=+||-.+...|+|++++..+.+ |.+++-+-..
T Consensus 107 ~n~DAN~lm~~~-----~~~fd~IDiDPFGSPaPFlDaA~~s~~~~--------G~l~vTATD~ 157 (380)
T COG1867 107 INKDANALLHEL-----HRAFDVIDIDPFGSPAPFLDAALRSVRRG--------GLLCVTATDT 157 (380)
T ss_pred ecchHHHHHHhc-----CCCccEEecCCCCCCchHHHHHHHHhhcC--------CEEEEEeccc
Confidence 889999998752 36799999999888889999999999875 4677665543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=104.72 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=80.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCc-EEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nr-V~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.+++.+++|+|+|+++++++.+++|+..|++.++ +.++++|..+.+. ...||.|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-------GDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-------ccCceEE
Confidence 5788999999999999999999989999999999999999999999998755 8899999866432 2479999
Q ss_pred EeCCCcch-------------------------HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA-------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a-------------------------~eFLdaa~~lLk~~ 525 (600)
++|||... ..++..+.++++++
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 99998642 24678888888876
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=95.52 Aligned_cols=101 Identities=29% Similarity=0.317 Sum_probs=82.3
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
.+++. +.++++|+|+|||.|.+++.++++ +++|+++|+|+.+++.+++|++.+++.+ ++++++|+...+...
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 85 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDS--- 85 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhh---
Confidence 34443 456789999999999999999986 3699999999999999999999999875 899999987543221
Q ss_pred hcCCcccEEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
..+||.|+++.+. ...++++.+.+.++++
T Consensus 86 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 86 --LPEPDRVFIGGSGGLLQEILEAIWRRLRPG 115 (124)
T ss_pred --cCCCCEEEECCcchhHHHHHHHHHHHcCCC
Confidence 3579999997643 3467899999999986
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-10 Score=121.06 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+++. +++|+|+|+|+.+++.+++|++.+|+.+ |+++++|+.++.. ...|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~-------~~~f 319 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSP-------EEQP 319 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCccccccc-------CCCC
Confidence 457899999999999999988874 3599999999999999999999999975 9999999987641 3579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|.|++|+|.++ .++|..+.++++++ |++.+.+.+-.
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg--------G~lvystcs~~ 381 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG--------GVLVYATCSIE 381 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC--------cEEEEEeCCCC
Confidence 99999999743 13678888888876 46655554443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-10 Score=111.36 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=77.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|++++.+|+.. .+|+++|+++++++.+++|++.+++++ ++++++|+.+.... ...|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~------~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEP------LAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcc------cCCC
Confidence 6789999999999999999999874 369999999999999999999999975 99999999765421 3579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+++.+.. ...+.+.+.|+++
T Consensus 148 D~Ii~~~~~~--~~~~~~~~~L~~g 170 (215)
T TIGR00080 148 DRIYVTAAGP--KIPEALIDQLKEG 170 (215)
T ss_pred CEEEEcCCcc--cccHHHHHhcCcC
Confidence 9999997653 3445677788876
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-10 Score=103.84 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCeEEEEeeechHHHHHHhh-C--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK-I--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk-k--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++.+|||+|||+|.+++.+++ . +.+|+++|+|+++++.++++++.+++. +++++++|+.+ +...+ ...||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCee
Confidence 4678999999999999999994 3 579999999999999999999999999 49999999998 43101 15799
Q ss_pred EEEeCCCcc----hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPND----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+|+++.+.. ...++..+.++++++ |.+.+..+.
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~--------G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPG--------GILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCC--------cEEEEEECC
Confidence 999987642 246788999999876 455555554
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=106.79 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=83.1
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++.+|||+|||+|.+++.+|+. +.+|+|+|+|+.+++.+++|++.+++.+ ++++++|+.+.+...+ ....||.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~---~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMF---PDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHc---CccccceE
Confidence 6789999999999999999886 3689999999999999999999999865 9999999944443222 24679999
Q ss_pred EeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+++.|.. ...++..+.++++++ |++.+.+
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg--------G~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG--------GEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCC--------CEEEEEc
Confidence 9975431 257899999999986 4666544
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-09 Score=110.24 Aligned_cols=168 Identities=10% Similarity=0.011 Sum_probs=103.4
Q ss_pred cEEEEEecCeeeecChhHHHHHHHHh----c-CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHH
Q 007525 397 HLSLFRCFDTIYWNSKLATERQRLLS----G-FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 397 G~~F~vD~~kfy~n~Rl~tEr~Riv~----~-l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNa 468 (600)
++.|++ ||+.-+.=-..|+. . ++++++|||+|||+|+++.++|... ..|||+|+++++.+.+.+-+
T Consensus 104 ~~eyR~------w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 104 KIEYRV------WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred cceeee------eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 455664 77764432223322 1 6799999999999999999999873 58999999999887777665
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC-C
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA-R 545 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~-~ 545 (600)
+.. . +|.++.+|++.-..... ....+|+|++|... .+..++.++.+.|+++ +.+-+ .+.+. .
T Consensus 178 k~r--~-NI~~I~~Da~~p~~y~~---~~~~vDvV~~Dva~pdq~~il~~na~r~LKpG--------G~~vI-~ika~~i 242 (293)
T PTZ00146 178 KKR--P-NIVPIIEDARYPQKYRM---LVPMVDVIFADVAQPDQARIVALNAQYFLKNG--------GHFII-SIKANCI 242 (293)
T ss_pred hhc--C-CCEEEECCccChhhhhc---ccCCCCEEEEeCCCcchHHHHHHHHHHhccCC--------CEEEE-EEecccc
Confidence 432 3 38899999875321100 13479999998743 2335667888899986 34444 33332 2
Q ss_pred CCchhHHHHHHHHHhhcccc--eEEEEeEEecCC-CcEEEEEEE
Q 007525 546 DPEFDFHERIRIALVEVAVN--VEMRRVRLVAPG-KWMLCASFV 586 (600)
Q Consensus 546 d~~~di~eRI~~~L~~~~~~--~~v~~VR~VAP~-K~mycvsFr 586 (600)
+...+.++++++++ ..++. +....+.+..|. +.|.++..+
T Consensus 243 d~g~~pe~~f~~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 243 DSTAKPEVVFASEV-QKLKKEGLKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred ccCCCHHHHHHHHH-HHHHHcCCceEEEEecCCccCCcEEEEEE
Confidence 22235556655444 22222 333333344443 355555444
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=107.73 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=84.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+..+|||+|||+|+-++.+|+. +++|+++|+++++++.+++|++.+++.++|+++++|+.+.+..+....+.+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 556889999999999977777653 36999999999999999999999999988999999999998776432224689
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
|.|++|.+.. -..+++.+.++++++
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 9999997543 246788888999886
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=109.01 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+|+.|.+|+++|+++.+++.++++++.+++.++++++++|+.++... ..+.||.|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-----~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-----LETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----cCCCCCEEE
Confidence 456899999999999999999999999999999999999999999999877799999999886432 246899999
Q ss_pred eCCCc----chHHHHHHHHHHhcCC
Q 007525 505 MNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+.... ....++..+.++++++
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCC
Confidence 86542 2346789999999987
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=119.68 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||+|.+++.+|+. +++|+|+|+++.+++.+++|++.+|+.+ ++++++|+.+....+ .+.|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~-----~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKF-----AEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchh-----cccC
Confidence 567899999999999999999985 3699999999999999999999999987 999999998764321 2579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|||.++ .++|..+.++++++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999642 24788888899886
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=117.07 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=70.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|.. +.+|+|+|+++.+++.+++|++..|+.+ ++++++|+.++... . .+.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~-~----~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEY-V----QDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhh-h----hccC
Confidence 568999999999999999999875 4699999999999999999999999986 99999999876421 1 3579
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|.|++|+|.+
T Consensus 309 D~Vl~DaPCs 318 (431)
T PRK14903 309 DRILVDAPCT 318 (431)
T ss_pred CEEEECCCCC
Confidence 9999999994
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=118.86 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|+. .++|+|+|+++.+++.+++|++.+|+.+ |+++++|+.+...... ...+.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~--~~~~~f 326 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKP--QWRGYF 326 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccc--cccccC
Confidence 567999999999999999999975 2589999999999999999999999986 9999999987642100 013579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|+|.++ .++|+.+.++++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999752 25688888888876
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=110.62 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=87.0
Q ss_pred EEEEecCeeeecChhH----HHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC
Q 007525 399 SLFRCFDTIYWNSKLA----TERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE 474 (600)
Q Consensus 399 ~F~vD~~kfy~n~Rl~----tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~ 474 (600)
.|..++..+|+..... .+-..++..+ ++.+|||+|||+|.+++++|+.|.+|+|+|+|+.+++.+++|++.+++
T Consensus 90 ~fy~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l- 167 (287)
T PRK12335 90 SFYCKPEDYFHKKYNLTATHSEVLEAVQTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL- 167 (287)
T ss_pred EEEEcchhhHhhhhccccccHHHHHHhhcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 4666666655544321 1112222233 445999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC------cchHHHHHHHHHHhcCC
Q 007525 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP------NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 475 nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP------~~a~eFLdaa~~lLk~~ 525 (600)
+ +++...|+.... ..+.||.|++... .....++..+.+.++++
T Consensus 168 ~-v~~~~~D~~~~~-------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 168 N-IRTGLYDINSAS-------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred c-eEEEEechhccc-------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 3 888888886532 1367999987643 22346888888899886
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=104.75 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=86.2
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.+|||+|||.|.+++.+|++ ...|+|+|+++.+++.+++|++.+++.| ++++++|+.++..... +.+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~---~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFF---PDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhC---CCCceeEE
Confidence 5679999999999999999987 3689999999999999999999999985 9999999998765433 23579999
Q ss_pred EeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
++|+|.. ..+++..+.++|+++ |.+++-+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg--------G~l~~~t 132 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG--------GVIHFKT 132 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCC--------CEEEEEe
Confidence 9997642 147899999999987 5776644
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=106.35 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=81.0
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~ 492 (600)
.++++. +.++++|||+|||+|+++..+++. +++|+++|+++++++.+++|++.+++.++++++++|+.+.+..
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-- 139 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-- 139 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--
Confidence 344444 467899999999999999988875 3699999999999999999999999987799999999875421
Q ss_pred HhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||.|+++-... .+.+.+.+.|+++
T Consensus 140 ----~~~fD~Ii~~~~~~--~~~~~l~~~L~~g 166 (205)
T PRK13944 140 ----HAPFDAIIVTAAAS--TIPSALVRQLKDG 166 (205)
T ss_pred ----CCCccEEEEccCcc--hhhHHHHHhcCcC
Confidence 35799999986542 4456777888876
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=104.16 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=78.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+|++|.+|+|+|+++.+++.++++++.+++.+ +++.++|+.++. ....||.|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~-------~~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLT-------FDGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCC-------cCCCcCEEE
Confidence 456899999999999999999999999999999999999999999999975 899999987642 135699998
Q ss_pred eCCCc------chHHHHHHHHHHhcCC
Q 007525 505 MNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP~------~a~eFLdaa~~lLk~~ 525 (600)
++... ....++..+.++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 76432 2357889999999986
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-10 Score=108.87 Aligned_cols=81 Identities=28% Similarity=0.353 Sum_probs=63.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CE---------EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KR---------VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~---------V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~ 492 (600)
.++|+.|+|.|||+|++.|.+|..+ .. ++|.|+++.+++.+++|++..++.+.+.+.+.|+.++..
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~--- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL--- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG---
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc---
Confidence 6789999999999999999999763 34 889999999999999999999998889999999998751
Q ss_pred HhhcCCcccEEEeCCCcc
Q 007525 493 ASQKAHKITQVVMNLPND 510 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~ 510 (600)
..+.+|.||+|||+.
T Consensus 103 ---~~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 103 ---PDGSVDAIVTNPPYG 117 (179)
T ss_dssp ---TTSBSCEEEEE--ST
T ss_pred ---ccCCCCEEEECcchh
Confidence 246899999999995
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-09 Score=106.26 Aligned_cols=126 Identities=23% Similarity=0.231 Sum_probs=92.6
Q ss_pred ccEEEEEecCeeeecChhHHHH---HHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER---QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr---~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
+.....+|+.-.|-.-...+-+ ..+.....++.+|||+|||+|..++.+++.|. +|+|+|++|.+++.+++|++.|
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred CeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 4455677777666544333222 12223366899999999999999999988876 6999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.+.+.+..+|. +||.|++|.... ...+++.+.+.++++ |++.+..+..
T Consensus 166 ~~~~~~~~~~~~~--------------~fD~Vvani~~~~~~~l~~~~~~~Lkpg--------G~lilsgi~~ 216 (250)
T PRK00517 166 GVELNVYLPQGDL--------------KADVIVANILANPLLELAPDLARLLKPG--------GRLILSGILE 216 (250)
T ss_pred CCCceEEEccCCC--------------CcCEEEEcCcHHHHHHHHHHHHHhcCCC--------cEEEEEECcH
Confidence 9965566544432 599999997654 246778888889886 4666665543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-09 Score=108.09 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=93.2
Q ss_pred cChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 410 NSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 410 n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
....+.+-.+++-...+..+|||+|+|+|+.++.+|+. +.+|+++|.+++.++.+++|++.+|+.++|+++.+|+.+
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34444443344434566889999999999999999974 458999999999999999999999999889999999999
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCC
Q 007525 487 FIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
.++.+..+...+.||.|++|.+... .++++.+.++++++
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 9987543222357999999998643 57788888888876
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-09 Score=104.25 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=88.5
Q ss_pred HHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHH
Q 007525 416 ERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 416 Er~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~ 490 (600)
.++.+++. +.++++|||+|||+|.+++.+++. +++|+++|+++.+++.+++|++.+++.+ ++++++|+.+..
T Consensus 33 ~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-- 109 (231)
T TIGR02752 33 WRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELP-- 109 (231)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCC--
Confidence 34445544 457899999999999999999875 3599999999999999999999888864 999999997752
Q ss_pred HHHhhcCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 491 MFASQKAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
. +.++||.|+++... ...+++.++.++|+++ |++.+.++..
T Consensus 110 -~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g--------G~l~~~~~~~ 154 (231)
T TIGR02752 110 -F---DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG--------GKVVCLETSQ 154 (231)
T ss_pred -C---CCCCccEEEEecccccCCCHHHHHHHHHHHcCcC--------eEEEEEECCC
Confidence 1 24689999997542 1357888899999886 4666666543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=102.47 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=75.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
++.+|||+|||+|.+++.+|++|.+|+|+|+++.+++.++++++.+++. +.+..+|..... ....||.|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~-------~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA-------LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc-------ccCCCCEEEE
Confidence 4679999999999999999999999999999999999999999999885 777788875431 1347999998
Q ss_pred CCCcc------hHHHHHHHHHHhcCC
Q 007525 506 NLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP~~------a~eFLdaa~~lLk~~ 525 (600)
+.+.. ...++..+.++|+++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCC
Confidence 75532 246888999999986
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5e-09 Score=106.57 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=92.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|+.|||++||+|-+++.+++.. ++|+++|+|+.|++.+++-+..-++.+ |+++.+||.+.. + ++.+||
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP---f---~D~sFD 121 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP---F---PDNSFD 121 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC---C---CCCccC
Confidence 3479999999999999999999975 699999999999999999999888887 999999999875 2 468999
Q ss_pred EEEeC-----CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 502 QVVMN-----LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 502 ~VVmN-----pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+|.|. .| .....|.++.|+++++ |.+-|-+|.+-..
T Consensus 122 ~vt~~fglrnv~-d~~~aL~E~~RVlKpg--------G~~~vle~~~p~~ 162 (238)
T COG2226 122 AVTISFGLRNVT-DIDKALKEMYRVLKPG--------GRLLVLEFSKPDN 162 (238)
T ss_pred EEEeeehhhcCC-CHHHHHHHHHHhhcCC--------eEEEEEEcCCCCc
Confidence 99984 33 2467899999999997 5888888887544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-09 Score=113.61 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|++|||+|||.|++++.+|+. + ++|+|+|+++.+++.+++|++.+|+...+++..+|+...... . ....||
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~---~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-A---ENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-c---cccccC
Confidence 567999999999999999999985 3 699999999999999999999999974455577777543210 0 135799
Q ss_pred EEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
+|++|+|.++ .++|+.+.++++++
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999763 35788889999886
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=114.70 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|++|||+|||+|..++.+++.+ .+|+|+|+++.+++.+++|++.+|+. ++++++|+.+.... . ...+||
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~-~---~~~~fD 315 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQW-W---DGQPFD 315 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhh-c---ccCCCC
Confidence 5689999999999999999999864 59999999999999999999999985 68999999864321 1 135799
Q ss_pred EEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
.|++|||.++ .++|..+..+++++
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999753 15788888888886
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.9e-09 Score=107.92 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=74.8
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +++|++|||+|||.|.+++.+|++ |++|+++.++++.++++++.++..|+.+++++.++|.+++.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-------
Confidence 44544 789999999999999999999998 99999999999999999999999999999999999998753
Q ss_pred cCCcccEEEe-CC-----CcchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVM-NL-----PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVm-Np-----P~~a~eFLdaa~~lLk~~ 525 (600)
.+||+||. .. +..-..|+..+.++|+++
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 37999885 11 122357899999999987
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-09 Score=108.56 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=79.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||++||+|-+++.+++. + ++|+++|+++.+++.+++.++..+..+ |+++++|+.+..- ++++|
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp~------~d~sf 117 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLPF------PDNSF 117 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB--S-------TT-E
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhcC------CCCce
Confidence 568999999999999999999985 3 599999999999999999999988874 9999999988642 25789
Q ss_pred cEEEe-----CCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 501 TQVVM-----NLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 501 D~VVm-----NpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
|.|+| |.|. ....|.++.++|+++ |++-|.+|++...
T Consensus 118 D~v~~~fglrn~~d-~~~~l~E~~RVLkPG--------G~l~ile~~~p~~ 159 (233)
T PF01209_consen 118 DAVTCSFGLRNFPD-RERALREMYRVLKPG--------GRLVILEFSKPRN 159 (233)
T ss_dssp EEEEEES-GGG-SS-HHHHHHHHHHHEEEE--------EEEEEEEEEB-SS
T ss_pred eEEEHHhhHHhhCC-HHHHHHHHHHHcCCC--------eEEEEeeccCCCC
Confidence 99997 4443 356899999999997 6899999988654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-09 Score=100.30 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+++.|||+|||.|.++..+++++++|+|+|+++.+++.+++|+.. .. +++++++|+.++.. ....+|.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~------~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDL------PKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCc------cccCCCEE
Confidence 45788999999999999999999988999999999999999999854 23 59999999988742 12358999
Q ss_pred EeCCCcch-HHHHHHH
Q 007525 504 VMNLPNDA-TEFLDAF 518 (600)
Q Consensus 504 VmNpP~~a-~eFLdaa 518 (600)
+.|||+.. .+.+..+
T Consensus 82 i~n~Py~~~~~~i~~~ 97 (169)
T smart00650 82 VGNLPYNISTPILFKL 97 (169)
T ss_pred EECCCcccHHHHHHHH
Confidence 99999964 2344443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=110.63 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++++|||+|||+|.+++.++++ +++|+|+|+++.+++.++++++.+++.++++++++|+.+.. + +.+.||.|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~---~---~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP---F---EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---C---CCCCccEE
Confidence 56889999999999999999986 78999999999999999999999999777999999997642 1 24689999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.--. ....++.++.++++++ |++.+.+|..
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpG--------G~lvi~~~~~ 226 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPG--------GRIIIVTWCH 226 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCC--------cEEEEEEecc
Confidence 975321 2357899999999987 5777766654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=99.77 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=83.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++++|+|||+|..++.+|.. .++|||+|-++++++..++|++..+++| ++++.+||-+.+.. ...+|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~------~~~~d 104 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPD------LPSPD 104 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcC------CCCCC
Confidence 779999999999999999999954 4699999999999999999999999886 99999999998853 22799
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|+++==....+.|+.+...|+++
T Consensus 105 aiFIGGg~~i~~ile~~~~~l~~g 128 (187)
T COG2242 105 AIFIGGGGNIEEILEAAWERLKPG 128 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHcCcC
Confidence 999976555668889999988886
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-09 Score=124.97 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=85.3
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcCC----CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGFN----FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERN 467 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~----~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eN 467 (600)
.|+.|.++++- +.||-.+|. +. ++... ++.+|+|+|||+|.+++.+|++. .+|+|+|+||+|++.+++|
T Consensus 85 ~~l~~~V~p~V--LIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 85 KKLTMMEIPSI--FIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred cCCceeeCCCc--ccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 78889998874 458877776 22 32221 34689999999999999999863 6999999999999999999
Q ss_pred HHHcCCC---------------CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 468 SVLNKLE---------------KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 468 aklNgl~---------------nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
+++|+++ ++++++++|..+.+.. ...+||+||.|||+-.
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-----~~~~fDlIVSNPPYI~ 215 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-----NNIELDRIVGCIPQIL 215 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccc-----cCCceEEEEECCCcCC
Confidence 9998653 4699999999876531 1236999999999853
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=107.31 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=79.4
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+|.+|||+|||.|.++.++|+.|++|+|+|+++++++.+++++..+++..+++++++|+.++.. ..++||.|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence 35779999999999999999999999999999999999999998888775569999999987642 146899999
Q ss_pred eCCC----cchHHHHHHHHHHhcCC
Q 007525 505 MNLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP----~~a~eFLdaa~~lLk~~ 525 (600)
+.-. .....|+.++.++++++
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCC
Confidence 7321 12357999999999987
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=110.36 Aligned_cols=95 Identities=14% Similarity=0.284 Sum_probs=83.0
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+..+||+|||.|.+++.+|++ ...++|+|+++.+++.+.+++..+++.| +.++++|+..++.. + +.+.+|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~-~---~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLEL-L---PSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhh-C---CCCceeEE
Confidence 4679999999999999999987 4699999999999999999999999987 99999999987643 3 35789999
Q ss_pred EeCCCcc----------hHHHHHHHHHHhcCC
Q 007525 504 VMNLPND----------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~----------a~eFLdaa~~lLk~~ 525 (600)
+++.|.. ...|+..+.++|+++
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 9988752 257999999999986
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=109.09 Aligned_cols=143 Identities=19% Similarity=0.218 Sum_probs=100.4
Q ss_pred EEEEeccEEEEEecCe---------eeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCC--------
Q 007525 391 TMLLFHHLSLFRCFDT---------IYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK-------- 449 (600)
Q Consensus 391 t~vkEnG~~F~vD~~k---------fy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~-------- 449 (600)
+.+.++.+...+|.+. +|.-+--..|. .-|+.. ..+++.++|.+||+|+|.|.||..+.
T Consensus 143 v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R 222 (381)
T COG0116 143 VELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNR 222 (381)
T ss_pred EEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCcccc
Confidence 4455566677777664 33333323344 222222 55778999999999999999998763
Q ss_pred ---------------------------------EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 450 ---------------------------------RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 450 ---------------------------------~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
..+|+|+++.+++.|+.|++..|+.+.|++.++|+..+-..
T Consensus 223 ~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------ 296 (381)
T COG0116 223 RFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------ 296 (381)
T ss_pred ccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------
Confidence 37799999999999999999999999999999999887531
Q ss_pred CCcccEEEeCCCcch-------HH-HHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 497 AHKITQVVMNLPNDA-------TE-FLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a-------~e-FLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
.+.+|+||+|||+.- .+ ....+.+.++.. +..-..|.|+..++
T Consensus 297 ~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~-------~~~ws~~v~tt~e~ 347 (381)
T COG0116 297 LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL-------LAGWSRYVFTTSED 347 (381)
T ss_pred CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH-------hcCCceEEEEccHH
Confidence 257899999999952 22 334444444432 12236688877654
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-09 Score=107.77 Aligned_cols=119 Identities=21% Similarity=0.188 Sum_probs=86.2
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhc-----CCCCCeEEEEeeechHHHHHHhhC--CC
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI--VK 449 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk--g~ 449 (600)
.+.+|-|+.+. .++.....++ | +.+|-.||- +++++. ...+..+||+|||+|.+++.++.. .+
T Consensus 102 PlQYIlg~~~F------~~l~l~~~pg-V-lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~ 173 (328)
T KOG2904|consen 102 PLQYILGSQPF------GDLDLVCKPG-V-LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQC 173 (328)
T ss_pred ChhheeccCcc------CCceEEecCC-e-eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCc
Confidence 34445565442 2333333333 2 457888876 445543 235678999999999999999985 47
Q ss_pred EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChH----HHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 450 RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR----RFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 450 ~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDar----e~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
.|+|+|.++.|+..+.+|+.++++.+++.+++-+.. +-.. + ..++.|.++.|||+-
T Consensus 174 ~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l----~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 174 TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-L----LEGKIDLLVSNPPYI 233 (328)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-c----ccCceeEEecCCCcc
Confidence 999999999999999999999999999999865433 2211 1 247899999999983
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=107.32 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=72.7
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. +.+++.|+|+|||.|.++..+++.+.+|+|+|+++.+++.+++|+..++..++++++++|+.+.-
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------- 98 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------- 98 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--------
Confidence 44443 66889999999999999999999988999999999999999999998876556999999997752
Q ss_pred CCcccEEEeCCCcc
Q 007525 497 AHKITQVVMNLPND 510 (600)
Q Consensus 497 ~~~fD~VVmNpP~~ 510 (600)
...+|.||.|+|+.
T Consensus 99 ~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 FPYFDVCVANVPYQ 112 (294)
T ss_pred ccccCEEEecCCcc
Confidence 23589999999996
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.5e-09 Score=111.69 Aligned_cols=116 Identities=28% Similarity=0.339 Sum_probs=86.7
Q ss_pred CeeeecChhHHHHHHHH------hc----CCCCCeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 405 DTIYWNSKLATERQRLL------SG----FNFKDVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 405 ~kfy~n~Rl~tEr~Riv------~~----l~~ge~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~Ave~l~eNaklN 471 (600)
..+|+|+...-.|...+ +. ..++-+|||.+||+|-=||.+|+. + .+|++||+||+|++.+++|+++|
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 45899999888774222 11 123458999999999999999987 3 59999999999999999999999
Q ss_pred CCCC-cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 472 KLEK-KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 472 gl~n-rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
++++ ++++.++||..++.. ....||+|=+||-.+...||+++.+..+.+
T Consensus 98 ~~~~~~~~v~~~DAn~ll~~-----~~~~fD~IDlDPfGSp~pfldsA~~~v~~g 147 (377)
T PF02005_consen 98 GLEDERIEVSNMDANVLLYS-----RQERFDVIDLDPFGSPAPFLDSALQAVKDG 147 (377)
T ss_dssp T-SGCCEEEEES-HHHHHCH-----STT-EEEEEE--SS--HHHHHHHHHHEEEE
T ss_pred cccCceEEEehhhHHHHhhh-----ccccCCEEEeCCCCCccHhHHHHHHHhhcC
Confidence 9987 799999999998741 257899999999888899999999999875
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-09 Score=109.87 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEE-EcChHHHHHHHHHhhcCCccc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVF-NMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i-~gDare~l~~l~~~~~~~~fD 501 (600)
.+.+|||+|||+|.++..++.+ +.+++|+|+++.|++.+++|++.| ++.++|++. +.|..++...+.. ..+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCceE
Confidence 4578999999999887776654 679999999999999999999999 899889886 4555554433211 246899
Q ss_pred EEEeCCCcch
Q 007525 502 QVVMNLPNDA 511 (600)
Q Consensus 502 ~VVmNpP~~a 511 (600)
+|++|||+..
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999999964
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=102.48 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=71.6
Q ss_pred CeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 405 DTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 405 ~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
...|+.|....... ++. ...+.+|||+|||+|.+++.++++ +.+|+++|+|+.+++.+++|. . +++++++
T Consensus 45 ~G~FfTP~~i~~~f-~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~ 116 (279)
T PHA03411 45 SGAFFTPEGLAWDF-TID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITS 116 (279)
T ss_pred ceeEcCCHHHHHHH-Hhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEEC
Confidence 45678887665432 222 334578999999999999999875 469999999999999999874 2 3889999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|++++.. ..+||.||+|||+.
T Consensus 117 D~~e~~~-------~~kFDlIIsNPPF~ 137 (279)
T PHA03411 117 DVFEFES-------NEKFDVVISNPPFG 137 (279)
T ss_pred chhhhcc-------cCCCcEEEEcCCcc
Confidence 9988752 35799999999985
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=103.66 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=101.1
Q ss_pred eecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 408 YWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk-----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
|+.|...+.+. ++... .+.+|||+|||+|.+++.++++ ...|+|+|+|+.|++.+++|+. ++.++++
T Consensus 33 FfTP~~iAr~~-~i~~~-~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~ 104 (241)
T PHA03412 33 FFTPIGLARDF-TIDAC-TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA 104 (241)
T ss_pred cCCCHHHHHHH-HHhcc-CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc
Confidence 55565443322 22223 4679999999999999999874 3589999999999999998852 2789999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcch----------------HHHHHHHHHHhcCCCCC---CCCCcc--EEEEEec
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPNDA----------------TEFLDAFRGIYRDRPED---AKFTFP--KIHLYGF 541 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~a----------------~eFLdaa~~lLk~~~~~---g~~~~p--~IHvY~F 541 (600)
|+.... ...+||+||+|||+.. ..++..+.++++++..- ....+. --|.|..
T Consensus 105 D~~~~~-------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~ 177 (241)
T PHA03412 105 DALTTE-------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQ 177 (241)
T ss_pred chhccc-------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceee
Confidence 987642 1357999999999851 24677777766654100 000011 1233332
Q ss_pred cCCCCCchhHHHHHHHHHhhc---c----cceEEEEeEEecCCCcEEEEEEEecc
Q 007525 542 SKARDPEFDFHERIRIALVEV---A----VNVEMRRVRLVAPGKWMLCASFVLPE 589 (600)
Q Consensus 542 ~k~~d~~~di~eRI~~~L~~~---~----~~~~v~~VR~VAP~K~mycvsFrlp~ 589 (600)
..... +.-..+..++-+-. . ..+-...-+.|+|--..+|++|.=+.
T Consensus 178 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PHA03412 178 DESTT--SSKCKKFLDETGLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNEPE 230 (241)
T ss_pred ccCcc--cHHHHHHHHhcCeeecCCCCccceeehhhccCCCccceEEEEeecCcC
Confidence 32221 11121222211110 0 11223346789999999999998765
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=100.68 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|+++..+++. + ++|+++|+++++++.+++|++.+++.+ ++++++|+.+... ....|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~------~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTLGYE------ENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCC------cCCCc
Confidence 678999999999999999998876 2 599999999999999999999999875 9999999876432 13579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+++-- ..+....+.+.|+++
T Consensus 147 D~I~~~~~--~~~~~~~l~~~Lkpg 169 (212)
T PRK13942 147 DRIYVTAA--GPDIPKPLIEQLKDG 169 (212)
T ss_pred CEEEECCC--cccchHHHHHhhCCC
Confidence 99998742 234456677788876
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=99.99 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=82.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+.++.+|||+|||+|..++.+++. +++|+|+|+++.+++.+++|+..++..++++++++|+.+.. ...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~ 125 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IEN 125 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCC
Confidence 568899999999999999988862 57999999999999999999999988777999999987652 235
Q ss_pred ccEEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 500 ITQVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 500 fD~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+|.|+++... ....++..+.++|+++ |.+-+.+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG--------G~l~l~e 164 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPG--------GALVLSE 164 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC--------CEEEEEE
Confidence 8999987532 1246788999999886 4565555
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-09 Score=103.83 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=83.5
Q ss_pred CeeeecC-hhHHHH--HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 405 DTIYWNS-KLATER--QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 405 ~kfy~n~-Rl~tEr--~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
...||.+ .-.+|+ .++...+ ..++|+|.|||+|+-+|..|.+++.|+|+|++|.-+.++++|++.-|+.++|++++
T Consensus 71 e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 71 EGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred cceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 3344443 334444 2333333 67899999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCCCcchHH
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNLPNDATE 513 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNpP~~a~e 513 (600)
||..+....+... ...+|.|.+-||-+...
T Consensus 150 GD~ld~~~~lq~~--K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 150 GDFLDLASKLKAD--KIKYDCVFLSPPWGGPS 179 (263)
T ss_pred chHHHHHHHHhhh--hheeeeeecCCCCCCcc
Confidence 9999987655432 23478999999876443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-08 Score=99.27 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|||+|||.|..++.+++. + .+|+++|+++.+++.+++|++.+++.+ ++++.+|+.+.. + +.+.|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~---~---~~~~f 147 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALP---V---ADNSV 147 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCC---C---CCCce
Confidence 678999999999999998887764 3 489999999999999999999999874 999999986642 1 24579
Q ss_pred cEEEeCCC----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLP----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|.|+.+.- ......+..+.++|+++ |++.+.++...
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpG--------G~l~i~~~~~~ 187 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPG--------GRFAISDVVLR 187 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCC--------cEEEEEEeecc
Confidence 99997742 23457899999999986 57888776543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=101.52 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=90.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+|+|.|+|.++..+|.. | ++|+..|+.++.++.|++|++.-++.|+|+...+|+.+.+. ...|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence 789999999999999999999973 3 59999999999999999999999999889999999998864 3479
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|+|++|.|. ..++++.+..+|+++ +++-||+
T Consensus 165 Dav~LDmp~-PW~~le~~~~~Lkpg--------g~~~~y~ 195 (256)
T COG2519 165 DAVFLDLPD-PWNVLEHVSDALKPG--------GVVVVYS 195 (256)
T ss_pred CEEEEcCCC-hHHHHHHHHHHhCCC--------cEEEEEc
Confidence 999999998 689999999999987 4666664
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=96.59 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||+|+++..+++.+.+|+++|+++++++.+++|++.+++.+ +++.++|+.+... ....||.|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~------~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWP------AYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCC------cCCCcCEE
Confidence 5678999999999999999888877799999999999999999999999986 9999999865432 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++.+.. ...+.+...|+++
T Consensus 149 ~~~~~~~--~~~~~l~~~L~~g 168 (212)
T PRK00312 149 LVTAAAP--EIPRALLEQLKEG 168 (212)
T ss_pred EEccCch--hhhHHHHHhcCCC
Confidence 9987543 3456677778775
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=102.05 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=78.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
+|.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.++.-+..+++. +...+..+.+.... .++||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~------~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA------GGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc------CCCccEEEE
Confidence 6889999999999999999999999999999999999999999999996 67777777776532 478999986
Q ss_pred CC----CcchHHHHHHHHHHhcCC
Q 007525 506 NL----PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 Np----P~~a~eFLdaa~~lLk~~ 525 (600)
.= -.....|+.+..++++++
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCC
Confidence 31 223457999999999986
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=108.64 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=82.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~~~~~~~fD~ 502 (600)
+++|+.|+|.|||||+|.|.|.-.|++|+|+|++..+++-++.|.+.-++++ ..++.+ ||.... + ...++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp---l---~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP---L---RDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC---C---CCCccce
Confidence 8899999999999999999999999999999999999999999999999987 666766 998764 2 1346999
Q ss_pred EEeCCCcch-------------HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-------------~eFLdaa~~lLk~~ 525 (600)
|+.|||+.. .++++.+...++++
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 999999841 26888889999875
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=100.70 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=84.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHH--cCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVL--NKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNakl--Ngl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
+.++++|||+|||+|.+++.++++ + ++|+|+|+++++++.+++++.. ++...+++++++|+.++. + +.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~---~~~ 144 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---F---DDC 144 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---C---CCC
Confidence 567899999999999999999875 3 5999999999999999987642 222235999999997753 1 246
Q ss_pred cccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 499 KITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 499 ~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+||.|+++.-- ....++.++.++|+++ |.+.+-+|.+.+
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG--------G~l~i~d~~~~~ 187 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPG--------SRVSILDFNKST 187 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcC--------cEEEEEECCCCC
Confidence 89999985321 2457899999999987 588888888754
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-08 Score=99.69 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=86.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+++|++|||+|||.|.+++.||++ |++|+|+++|++.++.+++.++..|++++|++...|-+++- +.||.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---------e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---------EPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---------cccce
Confidence 789999999999999999999998 89999999999999999999999999988999999999874 45999
Q ss_pred EEe-CCC-----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 503 VVM-NLP-----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVm-NpP-----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
||. .-- ..-..|+..+.++|+++ |.+-.|++...
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~--------G~~llh~I~~~ 180 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPG--------GRMLLHSITGP 180 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCC--------ceEEEEEecCC
Confidence 985 111 11346888888888876 45556666543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=114.99 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--------------------------------------------CEEEEEeCcHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--------------------------------------------KRVYANDLNPYA 460 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--------------------------------------------~~V~AvDiNP~A 460 (600)
.+++.++|.|||+|+|.|.||..+ .+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 568999999999999999998631 269999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 461 VDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 461 ve~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++.+++|++.+|+.+.+++.++|+.++.... ..+.+|.||+|||+.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCCc
Confidence 9999999999999888999999998864210 124699999999984
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=97.45 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=86.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+...||++|+|+|+-++.+|+. +++|+++|+||+.++.+++|++..|+.++|+++.+|+.+++..+......+.|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 346679999999999999999974 57999999999999999999999999989999999999999887654223589
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
|.|++|-... -..+++.+.++++++
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEEE
T ss_pred eEEEEcccccchhhHHHHHhhhccCC
Confidence 9999998664 357888899999876
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-08 Score=99.48 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+...|||+|||.|.++..+++. +.+|+++|++|++++.++++...++...+++++.+|+++++... ..+||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-----~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-----RHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-----CCCCC
Confidence 345688999999999999988875 46999999999999999999887766557999999999998642 35799
Q ss_pred EEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++|.... ..+|+..+.+.|+++ |++-+..|..
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg--------Gvlvin~~~~ 180 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSD--------GIFVVNLWSR 180 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCC--------cEEEEEcCCC
Confidence 999985321 268999999999986 4666655544
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-08 Score=101.01 Aligned_cols=82 Identities=26% Similarity=0.369 Sum_probs=68.7
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. +.++++|+|+|||.|.+++.+++++.+|+|+|+++.+++.+++++.. .. +++++++|+.++.
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~~~~~-------- 88 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDALKVD-------- 88 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEeccccCC--------
Confidence 44443 56789999999999999999999988999999999999999998854 33 5999999998752
Q ss_pred CCcccEEEeCCCcch
Q 007525 497 AHKITQVVMNLPNDA 511 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a 511 (600)
...+|.|++|||+..
T Consensus 89 ~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 LPEFNKVVSNLPYQI 103 (258)
T ss_pred chhceEEEEcCCccc
Confidence 124799999999963
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.1e-08 Score=94.88 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..++..+++++.++|+.+.. .+||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---------GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---------CCcCEEE
Confidence 4689999999999999999999888999999999999999999999888656999999987642 4699888
Q ss_pred eC------CCcchHHHHHHHHHHhc
Q 007525 505 MN------LPNDATEFLDAFRGIYR 523 (600)
Q Consensus 505 mN------pP~~a~eFLdaa~~lLk 523 (600)
+. ++......+..+.++++
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~ 149 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTK 149 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhC
Confidence 63 12222345566655554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.3e-08 Score=95.55 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC--------------CCcEEEEEcChHHHHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------------EKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl--------------~nrV~~i~gDare~l~~ 490 (600)
.++.+|||+|||.|..++.+|.+|..|+|+|++|.|++.+.. .+++ ..+|+++++|..++-..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 577899999999999999999999999999999999998643 2222 12488999999876321
Q ss_pred HHHhhcCCcccEEE-----eCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 491 MFASQKAHKITQVV-----MNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 491 l~~~~~~~~fD~VV-----mNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..+.||.|+ +-.|.. -..++..+.++++++ |++++.+|..
T Consensus 110 -----~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg--------G~~ll~~~~~ 155 (213)
T TIGR03840 110 -----DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG--------ARQLLITLDY 155 (213)
T ss_pred -----cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC--------CeEEEEEEEc
Confidence 023466443 334433 346899999999987 5778887765
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-08 Score=97.45 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC--------------CCcEEEEEcChHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------------EKKIEVFNMDGRRFID 489 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl--------------~nrV~~i~gDare~l~ 489 (600)
+.++.+|||++||.|..++.+|.+|+.|+|+|+++.|++.+.. .+++ ..+|+++++|+.++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3567899999999999999999999999999999999998642 3332 2358999999988742
Q ss_pred HHHHhhcCCcccEEE-----eCCCc-chHHHHHHHHHHhcCC
Q 007525 490 AMFASQKAHKITQVV-----MNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 490 ~l~~~~~~~~fD~VV-----mNpP~-~a~eFLdaa~~lLk~~ 525 (600)
. ....||.|+ +-+|. .-..++..+.++|+++
T Consensus 112 ~-----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 112 A-----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred c-----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 1 124677766 33443 3457899999999987
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=99.56 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
++++++|||+|||+|.+++.+|+.. ..|+++|+++++++.+++|++.+++++ +.++++|+.+.+.. ...|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~------~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPE------FAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccc------cCCc
Confidence 5688999999999999999999853 379999999999999999999999975 99999998765432 2469
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+++.. .....+.+.+.++++
T Consensus 151 D~Ii~~~g--~~~ip~~~~~~Lkpg 173 (322)
T PRK13943 151 DVIFVTVG--VDEVPETWFTQLKEG 173 (322)
T ss_pred cEEEECCc--hHHhHHHHHHhcCCC
Confidence 99999742 223445566777765
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.9e-08 Score=98.55 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=88.8
Q ss_pred eecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcCh
Q 007525 408 YWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG 484 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDa 484 (600)
|+.++-...-..+++. +.++.+|||+|||+|..+..+++. +++|+|+|+++.+++.+++++.. .+++.+.++|+
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~ 108 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDI 108 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCc
Confidence 4555534334556654 578899999999999999999875 67999999999999999998654 23599999998
Q ss_pred HHHHHHHHHhhcCCcccEEEeCC-----C-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 485 RRFIDAMFASQKAHKITQVVMNL-----P-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 485 re~l~~l~~~~~~~~fD~VVmNp-----P-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+.. + +.++||+|++.. + .....++..+.++|+++ |++-+.++...
T Consensus 109 ~~~~---~---~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG--------G~lvi~d~~~~ 160 (263)
T PTZ00098 109 LKKD---F---PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN--------GILLITDYCAD 160 (263)
T ss_pred ccCC---C---CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEeccc
Confidence 6431 1 246899999842 2 13457889999999987 46666666543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=94.44 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=82.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+.++.+|||+|||+|.+++.++++ +++|+++|+++.+++.++++++..+...+++++++|+.++. ...
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~ 122 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKN 122 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCC
Confidence 467889999999999999999874 57999999999999999999988776556999999998753 235
Q ss_pred ccEEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|.|+++..- ....++..+.+.|+++ |.+-+.+...
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg--------G~l~i~d~~~ 164 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPN--------GVLVLSEKFR 164 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCC--------eEEEEeeccc
Confidence 7888876431 2357889999999886 4666665443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-08 Score=98.80 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH-HHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR-FIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare-~l~~l~~~~~~~~ 499 (600)
+.+|++|++.|.|+|.+++.+|+. | ++|+..|.+++-++.|++|++.+++.++|++.+.|+.+ .... +....
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~----~~~~~ 113 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE----ELESD 113 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST----T-TTS
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc----cccCc
Confidence 789999999999999999999985 3 59999999999999999999999998789999999863 2211 11357
Q ss_pred ccEEEeCCCcchHHHHHHHHHHh-cCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIY-RDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lL-k~~ 525 (600)
+|.|++|+|. ..+.++.+.++| +++
T Consensus 114 ~DavfLDlp~-Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 114 FDAVFLDLPD-PWEAIPHAKRALKKPG 139 (247)
T ss_dssp EEEEEEESSS-GGGGHHHHHHHE-EEE
T ss_pred ccEEEEeCCC-HHHHHHHHHHHHhcCC
Confidence 9999999998 467788899999 554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-08 Score=98.10 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=74.3
Q ss_pred HHHhc--CCCCC--eEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc------C--CCCcEEEEEcChHH
Q 007525 419 RLLSG--FNFKD--VVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN------K--LEKKIEVFNMDGRR 486 (600)
Q Consensus 419 Riv~~--l~~ge--~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN------g--l~nrV~~i~gDare 486 (600)
.+++. +++|. +|||++||.|.-|+.+|..|++|+++|-||.+...+++|++.. + +..+++++++|+.+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 44444 46777 8999999999999999999999999999999999999999984 2 22469999999999
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcc
Q 007525 487 FIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++... ...||+|.+|||+.
T Consensus 157 ~L~~~-----~~~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTDI-----TPRPQVVYLDPMFP 175 (250)
T ss_pred HHhhC-----CCCCcEEEECCCCC
Confidence 99752 34799999999984
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=101.20 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..+++. +.++.+|||+|||+|.+++.+|+. +++|+|+|+++.+++.+++|+. +...++++.++|+.+.. +
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~---~-- 328 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT---Y-- 328 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC---C--
Confidence 445543 467889999999999999999986 6799999999999999999986 44446999999987642 1
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+.++||.|++.--. ....++..+.++++++ |++-+.++...
T Consensus 329 -~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~~~ 373 (475)
T PLN02336 329 -PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG--------GKVLISDYCRS 373 (475)
T ss_pred -CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCC--------eEEEEEEeccC
Confidence 24579999985221 2357899999999986 46666666553
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.2e-07 Score=92.66 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=78.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHc--CC--CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLN--KL--EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklN--gl--~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
...++||++|||.|.++..+++. + .+|+++|+++.+++.++++.... +. +.+++++.+|+++++.. ..+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-----~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-----TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-----CCC
Confidence 45689999999999999999987 4 59999999999999999998643 22 34799999999999864 246
Q ss_pred cccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
+||+|++|.+. ...+|+..+.+.|+++
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 89999998532 1357888888999876
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=75.80 Aligned_cols=91 Identities=19% Similarity=0.309 Sum_probs=74.1
Q ss_pred eEEEEeeechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||.|.++..+++ .+.+++++|+++.++..++++...++.. ++.++.+|..+.... ....+|.|++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPE-----ADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccc-----cCCceEEEEEcc
Confidence 489999999999999998 4579999999999999999766555554 499999999887531 145799999999
Q ss_pred Ccch-----HHHHHHHHHHhcCC
Q 007525 508 PNDA-----TEFLDAFRGIYRDR 525 (600)
Q Consensus 508 P~~a-----~eFLdaa~~lLk~~ 525 (600)
+... ..++..+...++++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCC
Confidence 8765 56778888888765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=92.04 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=74.2
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcC
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKA 497 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~ 497 (600)
.+++|..|||+|||+|.++..++++. +.|+|+|+++ .+.+.+ ++++++|+.+. +..+...-..
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~~-v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIVG-VDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCCC-cEEEecCCCChHHHHHHHHHhCC
Confidence 36789999999999999999998863 5899999999 134554 89999998874 2332221124
Q ss_pred CcccEEEeCC-Ccch--------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 498 HKITQVVMNL-PNDA--------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 498 ~~fD~VVmNp-P~~a--------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
..+|.|++|+ |... ...|..+.++|+++ |++-+-.|...
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG--------G~~vi~~~~~~ 169 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG--------GSFVVKVFQGE 169 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC--------CEEEEEEecCc
Confidence 6799999886 3210 34678888999886 46666667653
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=98.25 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=68.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+++.|||+|||+|.++..+++++.+|+|+|+++.+++.+++|+.. .+++++++|+.++-.. ...++.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~------~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS------ELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH------HcCcceE
Confidence 56789999999999999999999988999999999999999988742 3599999999876311 1115899
Q ss_pred EeCCCcch-HHHHHHH
Q 007525 504 VMNLPNDA-TEFLDAF 518 (600)
Q Consensus 504 VmNpP~~a-~eFLdaa 518 (600)
|.|||+.. ..++..+
T Consensus 110 v~NlPY~iss~ii~~~ 125 (272)
T PRK00274 110 VANLPYNITTPLLFHL 125 (272)
T ss_pred EEeCCccchHHHHHHH
Confidence 99999864 3444443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=93.23 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=73.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
.+++. ..++.+|||+|||+|.++..++++ +++|+|+|+++.+++.++++ +++++++|+.++.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~------ 85 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK------ 85 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC------
Confidence 34444 357899999999999999999987 57999999999999998763 2678999987653
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
....||.|+++... ....++..+.++|+++
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCC
Confidence 13579999998643 2356788889999886
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-08 Score=93.23 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|..++|+|||.|-+++.++.-+ ..|+|+||+|+|++...+|++.-.+. +.+.++|..+... ..+.||.+|
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~------~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLEL------KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhc------cCCeEeeEE
Confidence 68999999999999998888765 58999999999999999999998885 6889999877653 247899999
Q ss_pred eCCCcch------HHHHHHHHHHhc
Q 007525 505 MNLPNDA------TEFLDAFRGIYR 523 (600)
Q Consensus 505 mNpP~~a------~eFLdaa~~lLk 523 (600)
+|||... .+|++++..+.+
T Consensus 120 iNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred ecCCCCcccccccHHHHHHHHHHHH
Confidence 9999864 378888887664
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=93.83 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=82.1
Q ss_pred HHHhcCC--CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFN--FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++.+. ++..|||+|||+|.++..+++.+++|+++|+|+.+++.++++.. .+.++++|+.+.. + .
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~---~---~ 100 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP---L---A 100 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc---C---C
Confidence 4445443 46799999999999999999889999999999999999988742 1457889987642 1 2
Q ss_pred CCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 497 AHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 497 ~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
...||.|+++.+. ....++..+.++++++ |.+.+-+|...
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g--------G~l~~~~~~~~ 144 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPG--------GVVAFTTLVQG 144 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCC--------eEEEEEeCCCC
Confidence 4579999998754 2347889999999986 57777777654
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=102.03 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=87.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|.=+..+|.. ...|+|+|+++.-++.+++|+++.|+.| |.+.+.|+..+.... ...|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~-----~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAAL-----PETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhc-----hhhc
Confidence 478999999999999999999875 2589999999999999999999999987 999999998764321 3569
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|.|++|.|.++ .+.|+.+..+++++ |+| ||.-+.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG--------G~L-VYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG--------GTL-VYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC--------cEE-EEECCC
Confidence 99999999862 35788888888886 455 776665
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=94.82 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++. .+|+++|+ |.+++.+++|++..++.++++++.+|+.+.. ...+|
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--------~~~~D 217 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--------YPEAD 217 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--------CCCCC
Confidence 5678899999999999999999873 69999998 8999999999999999888999999987531 12368
Q ss_pred EEEeCC-----C-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNL-----P-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNp-----P-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++.- + ......+..+.+.++++ |++.++++.-
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pg--------G~l~i~d~~~ 257 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSG--------GRLLILDMVI 257 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence 776532 2 22356888899999886 5888888754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=82.84 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=68.6
Q ss_pred EEEEeeechHHHHHHhhCC-----CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 430 VCDVFAGVGPICIPAAKIV-----KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAkkg-----~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
|||+|||.|..+..+++.. .+++++|+++++++.++++....+. +++++++|+.++.. ..++||.|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 7999999999999999763 7999999999999999999998777 48999999988532 256899999
Q ss_pred e-CC--Ccc----hHHHHHHHHHHhcCC
Q 007525 505 M-NL--PND----ATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 m-Np--P~~----a~eFLdaa~~lLk~~ 525 (600)
+ .. .+. ...+++.+.++++++
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 8 33 222 246777777777653
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=91.66 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=71.0
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.++.+ ++.++||++||.|.-|+.+|++|..|+|+|+|+.+++.+++-++.++++ |++...|..++. ....
T Consensus 25 a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~-------~~~~ 94 (192)
T PF03848_consen 25 AVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD-------FPEE 94 (192)
T ss_dssp HCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TTT
T ss_pred HHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc-------ccCC
Confidence 34444 4568999999999999999999999999999999999999999999997 999999987653 1357
Q ss_pred ccEEEeC-----CCc-chHHHHHHHHHHhcCC
Q 007525 500 ITQVVMN-----LPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmN-----pP~-~a~eFLdaa~~lLk~~ 525 (600)
+|.|+.. +++ .....++.+...++++
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 9998742 222 2345667777777765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-07 Score=91.70 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=72.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||.|.++..+++. +++|+|+|+++.+++.++++. . ++.++.+|+.++. ...+||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~~~-------~~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P-DCQFVEADIASWQ-------PPQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhccC-------CCCCcc
Confidence 457899999999999999999986 479999999999999998874 3 3789999987653 135799
Q ss_pred EEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
.|+++... ....++..+.++|+++
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence 99998653 2347888899999886
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=91.14 Aligned_cols=101 Identities=16% Similarity=0.293 Sum_probs=83.8
Q ss_pred CCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
...+||+|||.|.|.+.+|+. ...++|+|+....+..+...+...++.| +.++++||..++..+++ .+++|.|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~---~~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFP---PGSVDRIY 93 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHST---TTSEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhccc---CCchheEE
Confidence 349999999999999999986 4699999999999999999999999997 99999999999887763 47899999
Q ss_pred eCCCc------------chHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 505 MNLPN------------DATEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 505 mNpP~------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
++.|. ...+|++.+.++|+++ |.||+-
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g--------G~l~~~ 132 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPG--------GELYFA 132 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEE--------EEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCC--------CEEEEE
Confidence 98775 2358999999999986 567653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.5e-07 Score=87.16 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=77.7
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
.+.+|||+|||+|.++..+++.+..|+++|+++.+++.+++|+..+++. ++.+.++|+.++... ...+||.|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-----~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK-----GAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC-----CCCCccEEEe
Confidence 4789999999999999999998889999999999999999999998875 388999998877532 1357999988
Q ss_pred CCC----cchHHHHHHHHHHhcCC
Q 007525 506 NLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP----~~a~eFLdaa~~lLk~~ 525 (600)
+-. .....++..+.++++++
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCC
Confidence 632 12356888888988876
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-07 Score=89.16 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=80.1
Q ss_pred CeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 428 DVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
++|||+|||.|.+++.+++. +++|+++|+++++++.++++++.+++.++++++++|..+.. ..+.||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-------~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-------FPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-------CCCCCCEeeh
Confidence 36999999999999999986 36999999999999999999999999888999999985432 1347999986
Q ss_pred CC----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 506 NL----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 506 Np----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.- -.....++..+.++|+++ |++-+.++.
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~ 106 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDG--------GHLVLADFI 106 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCC--------CEEEEEEcc
Confidence 32 112357899999999986 466666553
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=79.29 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=67.1
Q ss_pred EEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC-
Q 007525 431 CDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP- 508 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP- 508 (600)
||+|||.|.++..++++ +..|+++|+++.+++.++++...++ +.+.++|+.++. + +.++||+|++.--
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~---~---~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLP---F---PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSS---S----TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCc---c---ccccccccccccce
Confidence 79999999999999999 7899999999999999999876544 458999988873 1 2578999997532
Q ss_pred ---cchHHHHHHHHHHhcCC
Q 007525 509 ---NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 509 ---~~a~eFLdaa~~lLk~~ 525 (600)
.....++.++.++++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPG 90 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEE
T ss_pred eeccCHHHHHHHHHHHcCcC
Confidence 22357899999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-07 Score=96.23 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+++|++|||+|||+|.+++.+|+. |++|+|+|+++++++.++++++ ++ .+++..+|..+. .++||.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCE
Confidence 578999999999999999999986 7899999999999999999984 44 278888987653 257999
Q ss_pred EEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 503 VVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 503 VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|++... ..-..++..+.++|+++ |.+-++++.
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG--------G~lvl~~i~ 269 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPD--------GLFLLHTIG 269 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC--------cEEEEEEcc
Confidence 986532 11246889999999986 455555554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.5e-07 Score=87.45 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=83.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||.|.+++.++..+ .+|+++|+++.+++.+++|+..+++.+++.++.+|+.+... ..+.|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~ 122 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSF 122 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCc
Confidence 3467899999999999999999875 79999999999999999999888776679999999877531 24579
Q ss_pred cEEEeCCC----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 501 TQVVMNLP----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 501 D~VVmNpP----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|.|+++.- .....++..+..+++++ |.+-+.++..
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~g--------G~li~~~~~~ 161 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPG--------GRLVILEFSK 161 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCC--------cEEEEEEecC
Confidence 99987431 12457888999999876 4555555543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-07 Score=87.77 Aligned_cols=73 Identities=23% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++..|||+|||+|.++..+++.+..|+++|+++.+++.+++++..+++.+++.+..+|... ..+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEEE
Confidence 46789999999999999999999889999999999999999999988886679999999321 135799998
Q ss_pred eC
Q 007525 505 MN 506 (600)
Q Consensus 505 mN 506 (600)
+.
T Consensus 133 ~~ 134 (230)
T PRK07580 133 CL 134 (230)
T ss_pred Ec
Confidence 75
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=98.65 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=79.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC-----CC-CcEEEEEcChHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-----LE-KKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg-----l~-nrV~~i~gDare~l~~l~~~~ 495 (600)
.++.++|||+|||.|..+..+++.+ .+|+++|+||++++.+++|...+. ++ .+++++++|++++++.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 3567899999999999999998874 599999999999999999754332 32 3799999999998864
Q ss_pred cCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
..++||+|++|+|.. ..+|++.+.+.|+++
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 246899999998753 247889999999886
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=88.83 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=70.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. ..++++|||+|||+|.++..+++++..|+|+|+++.+++.++.++.. . .+++++++|+.++...
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~-~~v~v~~~D~~~~~~~------ 90 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--Y-ERLEVIEGDALKVDLP------ 90 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--C-CcEEEEECchhcCChh------
Confidence 45543 46789999999999999999999988999999999999999988743 2 3599999999875321
Q ss_pred CCccc---EEEeCCCcch-HHHHHHHH
Q 007525 497 AHKIT---QVVMNLPNDA-TEFLDAFR 519 (600)
Q Consensus 497 ~~~fD---~VVmNpP~~a-~eFLdaa~ 519 (600)
.+| .|+.|+|+.. ...+..+.
T Consensus 91 --~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 91 --DFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred --HcCCcceEEEcCChhhHHHHHHHHh
Confidence 244 9999999853 34444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.8e-06 Score=84.61 Aligned_cols=96 Identities=10% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc-C-C-CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN-K-L-EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN-g-l-~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
....+||++|||.|.++..+++.. .+|+++|+++.+++.++++.... + + ..+++++.+|+++++... .++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----ENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CCC
Confidence 345699999999999999888874 58999999999999999987543 2 2 236899999999998642 468
Q ss_pred ccEEEeCCCcc--------hHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPND--------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~--------a~eFLdaa~~lLk~~ 525 (600)
||+||+|++.. ..+|++.+.+.|+++
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 99999998731 458899999999886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=91.69 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=82.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+|++|+||||+-|+=+.++|.. |..|+|+|+++.=++.+++|+++-|+.| +.+++.|++.+..... ...+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~---~~~~ 229 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLP---GGEK 229 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccccc---ccCc
Confidence 678999999999999999988874 3568999999999999999999999998 9999999987754322 1235
Q ss_pred ccEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
||.|++|+|.++ .++|+.+..+++++
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999852 25788899999876
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=91.33 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=73.6
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
.+++.|+|+|+|.+++.||+++.+|+|+|.+|.-..++.+|++.+|..| ++++++||+++- -+..|+|++.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~--------fe~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYD--------FENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccccccc--------ccccceeHHH
Confidence 3899999999999999999998899999999999999999999999986 999999998863 1357888887
Q ss_pred CCcchH------HHHHHHHHHhcC
Q 007525 507 LPNDAT------EFLDAFRGIYRD 524 (600)
Q Consensus 507 pP~~a~------eFLdaa~~lLk~ 524 (600)
.-.++. ..+.+++..|+.
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~ 127 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRY 127 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhc
Confidence 665542 345555555543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-07 Score=101.18 Aligned_cols=92 Identities=32% Similarity=0.335 Sum_probs=73.0
Q ss_pred CCeEEEEeeechHHHHHHhhCC------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|+|+|||.|+++..+++.+ .+|||+|-||.|+..+++-++.|+++++|+++++|++++-. ++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5789999999999988777653 59999999999999999998999999899999999999842 5689
Q ss_pred cEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
|+||.-+-. ...+.|+++.+.|+++
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 999976543 3467888888888875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=89.45 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=89.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--C------CEEEEEeCcHHHHHHHHHHHHHcCCCCc--EEEEEcChHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--V------KRVYANDLNPYAVDYLERNSVLNKLEKK--IEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g------~~V~AvDiNP~Ave~l~eNaklNgl~nr--V~~i~gDare~l~~l~~ 493 (600)
...+..|||++||+|-+|+-+.+. . .+|+.+|+||+++..+++.++.-++... +.++++||.+.. +
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp---F- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP---F- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---C-
Confidence 346789999999999999988874 2 6899999999999999999988888543 899999999875 2
Q ss_pred hhcCCcccEEEe-----CCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 494 SQKAHKITQVVM-----NLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 494 ~~~~~~fD~VVm-----NpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+...||.++| |-+. ....|.++.++||++ |++-|-+|++.+.
T Consensus 174 --dd~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpG--------Grf~cLeFskv~~ 220 (296)
T KOG1540|consen 174 --DDDSFDAYTIAFGIRNVTH-IQKALREAYRVLKPG--------GRFSCLEFSKVEN 220 (296)
T ss_pred --CCCcceeEEEecceecCCC-HHHHHHHHHHhcCCC--------cEEEEEEcccccc
Confidence 3578999888 3333 457899999999997 5899999999874
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.3e-07 Score=93.87 Aligned_cols=72 Identities=25% Similarity=0.165 Sum_probs=59.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC----CCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL----EKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl----~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
++.+|||+|||+|.+++.+++.|++|+|+|+|+.+++.+++|++.... ..++.+..+|..++ .+.||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CCCcC
Confidence 578999999999999999999999999999999999999999886522 12478888987543 25799
Q ss_pred EEEeC
Q 007525 502 QVVMN 506 (600)
Q Consensus 502 ~VVmN 506 (600)
.|++.
T Consensus 215 ~Vv~~ 219 (315)
T PLN02585 215 TVTCL 219 (315)
T ss_pred EEEEc
Confidence 88753
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.3e-07 Score=88.86 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+++..+.++..|||+|||+|.++..+++. +++|+|+|+|+++++.+++|. . .+.++++|+.+.. .
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~~~-------~ 102 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFDPF-------K 102 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccCCC-------C
Confidence 33445677889999999999999999886 579999999999999999874 2 2677888887621 2
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
..+||.|+++-
T Consensus 103 ~~sfD~V~~~~ 113 (204)
T TIGR03587 103 DNFFDLVLTKG 113 (204)
T ss_pred CCCEEEEEECC
Confidence 46899999754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.2e-07 Score=97.69 Aligned_cols=102 Identities=17% Similarity=0.074 Sum_probs=76.2
Q ss_pred HHHHHhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 417 RQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 417 r~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
+..+++.+ .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++ .++...+++++++|+...... +
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~-~-- 99 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLN-I-- 99 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccC-C--
Confidence 34555553 357799999999999999999998899999999999976543 444434599999998642111 1
Q ss_pred hcCCcccEEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
+..+||.|+++.+.. ..+++..+.++++++
T Consensus 100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 246799999987543 246888888989876
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-05 Score=83.37 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=80.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc--CCC-CcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN--KLE-KKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN--gl~-nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
....++||++|||.|..+..+++.. .+|+.+|+++..++.+++..... +++ .+++++.+|++++++.. +.+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~----~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA----PEG 164 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc----cCC
Confidence 3567899999999999999999873 48999999999999999987542 343 37999999999998642 135
Q ss_pred cccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
+||+|++|.+. ...+|+..+.+.|+++
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 79999998754 2458999999999986
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=8e-07 Score=88.89 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=74.2
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~ 492 (600)
.++++. +++|++|||+|||+|+++-.+|.. | ..|+++|+++..++.+++|++..++.| |.++++|+......
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~-- 138 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPE-- 138 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGG--
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhcccc--
Confidence 345543 789999999999999999999986 3 379999999999999999999999986 99999999876532
Q ss_pred HhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||+|+++--.. +.-..+...|+.+
T Consensus 139 ----~apfD~I~v~~a~~--~ip~~l~~qL~~g 165 (209)
T PF01135_consen 139 ----EAPFDRIIVTAAVP--EIPEALLEQLKPG 165 (209)
T ss_dssp ----G-SEEEEEESSBBS--S--HHHHHTEEEE
T ss_pred ----CCCcCEEEEeeccc--hHHHHHHHhcCCC
Confidence 35799999985432 2224566667765
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=82.70 Aligned_cols=94 Identities=20% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||.|.+++.++... ++|+++|+++.+++.++++... ...++.+.++|+.+.. . ....|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~---~---~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP---F---PDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC---C---CCCCc
Confidence 5678999999999999999999862 5999999999999999998332 2235899999986542 1 24679
Q ss_pred cEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
|.|+++... ....++..+.++++++
T Consensus 89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 89 DAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred eEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 999986432 2356889999999986
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=98.02 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=76.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.++..+|+. +.+|+|+|+++.+++.+++++..++. ++.++++|+.++.. .+ +.++||.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~-~f---edeSFDv 490 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSS-SF---EKESVDT 490 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCcc-cc---CCCCEEE
Confidence 46889999999999999888875 46999999999999999999876654 48899999987431 12 2467999
Q ss_pred EEeCCCcc-----------------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND-----------------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~-----------------a~eFLdaa~~lLk~~ 525 (600)
|+++++.. ...++..+.++|+++
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 99885431 247888999999986
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.3e-06 Score=87.92 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH---HHc--CC-CCcEEEEEcChHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS---VLN--KL-EKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa---klN--gl-~nrV~~i~gDare~l~~l~~~~ 495 (600)
.....+||++|||.|..+..+++.. .+|+++|++|++++.+++.- ..| .+ +.+++++.+|+++++..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-----
Confidence 4556799999999999888888864 59999999999999999632 122 23 34799999999999864
Q ss_pred cCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
...+||+|++|+|.. ..+|+..+.+.|+++
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 246799999998642 257999999999986
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-07 Score=89.37 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=79.5
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.++++. +++|+.||++|||+|+-+--+|+.+.+|+++|..+..++.+++|++..|+.| |.+.++|+..-...
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~----- 135 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPE----- 135 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCC-----
Confidence 345543 7899999999999999999999998899999999999999999999999998 99999999876532
Q ss_pred cCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||+|+..--. .+.=+.+..-|+++
T Consensus 136 -~aPyD~I~Vtaaa--~~vP~~Ll~QL~~g 162 (209)
T COG2518 136 -EAPYDRIIVTAAA--PEVPEALLDQLKPG 162 (209)
T ss_pred -CCCcCEEEEeecc--CCCCHHHHHhcccC
Confidence 4689999985311 11113445557765
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.8e-07 Score=92.38 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCC-----cEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK-----KIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~n-----rV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
|..|||+|||.|-++.++|+.|+.|+|+|+++++++.+++.++.+-+.+ ++++.+.|+.+.. +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---------~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---------GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---------cccc
Confidence 5789999999999999999999999999999999999999976665443 3677777777653 4599
Q ss_pred EEEeCCC----cchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP----~~a~eFLdaa~~lLk~~ 525 (600)
.|++--- ....+|++.....++++
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 9986321 12357999999999987
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.7e-06 Score=84.33 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=84.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh-cCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ-KAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~-~~~~ 499 (600)
..+...||++|+++|+-|+.+|+. +++|+++|.+++.++.+++|++..|+.++|+++.||+.+.+..+...+ ..++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 345679999999999999999874 469999999999999999999999999999999999999998865321 1258
Q ss_pred ccEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
||.|++|--.. -..+++.+.++++++
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcCCC
Confidence 99999995432 246777778888775
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-06 Score=81.78 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=70.9
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQK 496 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~ 496 (600)
..+.+|++|||+|||+|.++..++++. ++|+|+|+|+.+ +..+ ++++++|+.+. +..+.+..+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHhC
Confidence 346889999999999999999888752 479999999964 2333 78888887653 111111112
Q ss_pred CCcccEEEeCCC-c-c-------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 497 AHKITQVVMNLP-N-D-------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 497 ~~~fD~VVmNpP-~-~-------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
...||.|++|.+ . . ...++..+.++++++ |.+.+..|..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~lvi~~~~~ 149 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK--------GNFVVKVFQG 149 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC--------CEEEEEEccC
Confidence 457999999852 1 1 135788888888876 4666655544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=88.95 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=71.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..|.+|||+|||.|.+++.++..|. .|+|+|.++.++..++...+..+...++.++.+|+.+... ...||.|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEE
Confidence 3688999999999999999999874 7999999999887655444433333359999999876531 3579999
Q ss_pred EeCC-C---cchHHHHHHHHHHhcCC
Q 007525 504 VMNL-P---NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNp-P---~~a~eFLdaa~~lLk~~ 525 (600)
++.- - .....++..+.+.|+++
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCC
Confidence 9742 1 12357889999999886
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=88.57 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=76.3
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..|++.+.++..|||+|||+|.++.++++. +.+|+|+|+|+++++.+++++....-.-+|.++++|..+.+......
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc
Confidence 345556778889999999999999999987 57999999999999999999876432224788999998754321100
Q ss_pred hcCCcccEEEeC------CCcchHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMN------LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmN------pP~~a~eFLdaa~~lLk~~ 525 (600)
.......++++ +|..+..+|..+.+.|+++
T Consensus 135 -~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 135 -AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred -ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 00122233333 2334567899999999886
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-06 Score=82.44 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=77.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++..|||+|||.|.+++.+++.+++|+++|+|+.+++.+++|+..++. .+.+..+|+.++... ..+.||.|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-----HPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-----cCCCccEEE
Confidence 4688999999999999999999989999999999999999999988877 378888998876532 246899998
Q ss_pred eCCCc----chHHHHHHHHHHhcCC
Q 007525 505 MNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+.... ....++..+.+.++++
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCC
Confidence 85321 2346788888888876
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=87.93 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=75.0
Q ss_pred CCCeEEEEeeechHH-HHHHhh-C--CCEEEEEeCcHHHHHHHHHHHHH-cCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGVGPI-CIPAAK-I--VKRVYANDLNPYAVDYLERNSVL-NKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGvG~F-aIpaAk-k--g~~V~AvDiNP~Ave~l~eNakl-Ngl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++|+|+|||-|++ ++.+++ . +.+++++|+++++++.++++++. .++.++++|..+|+.+.... ...|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~------l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES------LKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc------cCCc
Confidence 778999999997766 454443 2 46899999999999999999965 88988899999999885321 2579
Q ss_pred cEEEeCC-----CcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNL-----PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNp-----P~~a~eFLdaa~~lLk~~ 525 (600)
|+|+++- +..-.+.++.+.+.++++
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCC
Confidence 9999982 123457889999999886
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.9e-06 Score=82.90 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=90.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE-cChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~-gDare~l~~l~~~~~~~~ 499 (600)
..+...||++|.++|+-|+.+|.. ..+++++|.||+.++.|++|++..|++++|+.+. +|+.+.+... ..++
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~ 132 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGS 132 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCC
Confidence 567889999999999999999975 2589999999999999999999999999999999 6999988651 2578
Q ss_pred ccEEEeCCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
||.|++|-=. .-.+|++.+..+++++ +.|-+....-
T Consensus 133 fDliFIDadK~~yp~~le~~~~lLr~G--------Gliv~DNvl~ 169 (219)
T COG4122 133 FDLVFIDADKADYPEYLERALPLLRPG--------GLIVADNVLF 169 (219)
T ss_pred ccEEEEeCChhhCHHHHHHHHHHhCCC--------cEEEEeeccc
Confidence 9999998522 2358999999999986 4666665543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=86.73 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+.|.+.+.+|.+|||+|||.|.+--.+.. +++.++|+|++++.+..+.. +| +.++++|+.+.+... +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f----~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADF----P 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhC----C
Confidence 45777899999999999999999888876 68899999999998876544 45 468999999987653 4
Q ss_pred CCcccEEEeCCCcc----hHHHHHHHHHHhc
Q 007525 497 AHKITQVVMNLPND----ATEFLDAFRGIYR 523 (600)
Q Consensus 497 ~~~fD~VVmNpP~~----a~eFLdaa~~lLk 523 (600)
+.+||.|||+---. ..+.|++++++-+
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 68999999863111 1244555555543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.8e-06 Score=80.33 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=78.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|+|+|||.|.++..+++.+ ++++++|+++.+++.++++.. ..+++.++.+|+.+.. . ..+.|
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~---~---~~~~~ 107 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP---F---EDNSF 107 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC---C---CCCcE
Confidence 3468899999999999999999874 489999999999999999876 3345899999998753 1 13579
Q ss_pred cEEEeCC----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNL----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNp----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|+|+++. ......+++.+..+++++ |++-+.++.
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~ 145 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPG--------GRLVILEFS 145 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCC--------cEEEEEEec
Confidence 9998753 223467889999999886 456555543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-06 Score=85.11 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=87.6
Q ss_pred CeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 428 DVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
.++||+|||.|.|.+.+|++. ..++|+|+....+..+..-+...++.| +.++++||.+++..+. ++++.|.|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~---~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLI---PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcC---CCCCeeEEEE
Confidence 589999999999999999974 589999999999999999999999985 9999999999998765 2458999999
Q ss_pred CCCc------------chHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 506 NLPN------------DATEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 506 NpP~------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
+.|. ....|+..+.+.|+++ |.||+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g--------G~l~~ 162 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG--------GVLHF 162 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCC--------CEEEE
Confidence 9886 2358999999999987 57776
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=5e-06 Score=82.64 Aligned_cols=145 Identities=20% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-..++|+|||+|-|+..+|.++..++|+|+++.|++.+++.+. +..+ |++.++|..++. +.++||.||+-
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~-V~~~~~dvp~~~-------P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPH-VEWIQADVPEFW-------PEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SS-EEEEES-TTT----------SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCC-eEEEECcCCCCC-------CCCCeeEEEEe
Confidence 3689999999999999999998899999999999999999875 4564 999999998875 36789999974
Q ss_pred -------CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC----CCCchhHHHHHHHHHhhcccceEEEEeEEec
Q 007525 507 -------LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA----RDPEFDFHERIRIALVEVAVNVEMRRVRLVA 575 (600)
Q Consensus 507 -------pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~----~d~~~di~eRI~~~L~~~~~~~~v~~VR~VA 575 (600)
+......+++.+...|.++ | -.|-+| |..+ ..-.. -.+-|...+.+.+..++...++.-+
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pg---G----~LV~g~-~rd~~c~~wgh~~-ga~tv~~~~~~~~~~~~~~~~~~~~ 184 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPG---G----HLVFGH-ARDANCRRWGHAA-GAETVLEMLQEHLTEVERVECRGGS 184 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEE---E----EEEEEE-E-HHHHHHTT-S---HHHHHHHHHHHSEEEEEEEEE-SS
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCC---C----EEEEEE-ecCCcccccCccc-chHHHHHHHHHHhhheeEEEEcCCC
Confidence 2122235677777888776 2 123333 2211 00000 1122333444555667888899999
Q ss_pred CCCcEEEEEEEeccc
Q 007525 576 PGKWMLCASFVLPES 590 (600)
Q Consensus 576 P~K~mycvsFrlp~~ 590 (600)
|+..-+-+.|+-|.+
T Consensus 185 ~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 185 PNEDCLLARFRNPVS 199 (201)
T ss_dssp TTSEEEEEEEE--SS
T ss_pred CCCceEeeeecCCcC
Confidence 999999999998854
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-06 Score=83.11 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.++++|||+|..+-.+++. + ....|.||||+|++..++.++.|++. +.+++.|....++ .++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence 678999999999999999885 3 57999999999999999999999985 8899999988875 3689999
Q ss_pred EeCCCc
Q 007525 504 VMNLPN 509 (600)
Q Consensus 504 VmNpP~ 509 (600)
+.|||+
T Consensus 115 vfNPPY 120 (209)
T KOG3191|consen 115 VFNPPY 120 (209)
T ss_pred EECCCc
Confidence 999998
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.6e-07 Score=92.50 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=65.2
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhh---------CCCEEEEEeCcHHHHHHHHHHHHHcCCCC
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAK---------IVKRVYANDLNPYAVDYLERNSVLNKLEK 475 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAk---------kg~~V~AvDiNP~Ave~l~eNaklNgl~n 475 (600)
.|+.|+...+- +++. ..++++|+|.+||+|.|.+.+.+ ....++|+|+++.++..++-|+.++++..
T Consensus 27 ~~~TP~~i~~l--~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 27 QFYTPREIVDL--MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp GC---HHHHHH--HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred eeehHHHHHHH--HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 35566655432 2332 45678999999999999999886 34689999999999999999999988754
Q ss_pred c-EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 476 K-IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 476 r-V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
. ..+.++|........ ....||.||+|||...
T Consensus 105 ~~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFI----KNQKFDVIIGNPPFGS 137 (311)
T ss_dssp BGCEEEES-TTTSHSCT----ST--EEEEEEE--CTC
T ss_pred ccccccccccccccccc----cccccccccCCCCccc
Confidence 3 468888876542110 1357999999999853
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.9e-06 Score=86.13 Aligned_cols=100 Identities=13% Similarity=-0.021 Sum_probs=73.9
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
+++.. ..+|.+|||+|||+|.+++.++..|. .|+|+|.++.++..++...+..+...++.+..+++.+...
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~------ 185 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE------ 185 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC------
Confidence 45553 35689999999999999999998875 7999999999987654433332223358888888876531
Q ss_pred cCCcccEEEeCCC----cchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP----~~a~eFLdaa~~lLk~~ 525 (600)
...||.|++.-- .....+|.++.++|+++
T Consensus 186 -~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 186 -LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred -CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC
Confidence 247999987531 13457899999999987
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.5e-06 Score=82.81 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.++..+++. +.+|+|+|+++++++.+++. ...+++|+.+.. + +.++||.
T Consensus 49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp---~---~d~sfD~ 113 (226)
T PRK05785 49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALP---F---RDKSFDV 113 (226)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCC---C---CCCCEEE
Confidence 345789999999999999999988 57999999999999998753 134678887642 1 2578999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRD 524 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~ 524 (600)
|++..-- .....+.++.+++++
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred EEecChhhccCCHHHHHHHHHHHhcC
Confidence 9986522 234688899999986
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.24 E-value=8e-06 Score=78.95 Aligned_cols=120 Identities=21% Similarity=0.320 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcC--CCCcEEEEEcChHHHH-HHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRFI-DAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNg--l~nrV~~i~gDare~l-~~l~~~~~~~ 498 (600)
..++.+||++|||+|..|+.+|+. +++|++-|.++ +++.++.|++.|+ ..+++.+...|..+.. .... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---EPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---ccc
Confidence 557899999999999999999998 57999999999 9999999999998 5667888888865533 2222 235
Q ss_pred cccEEEe-CCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHH
Q 007525 499 KITQVVM-NLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIR 556 (600)
Q Consensus 499 ~fD~VVm-NpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~ 556 (600)
.||+|+. |.-+ ....++..+..+++++ + ..+-.|..-.. ....+.++++
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~---~----~vl~~~~~R~~--~~~~F~~~~~ 171 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPN---G----KVLLAYKRRRK--SEQEFFDRLK 171 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT----T----TEEEEEE-S-T--GGCHHHHHH-
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCC---C----EEEEEeCEecH--HHHHHHHHhh
Confidence 7999885 4433 3456778888888765 2 25555554322 2234555543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-06 Score=81.68 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.+.+.+.++++|||+|||.|.++..+++. +..++++|+++++++.++. + +++++++|+.+.+.. . ..
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~-~---~~ 73 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEA-F---PD 73 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccc-c---CC
Confidence 45556778899999999999999988865 5689999999999988754 2 267888998764321 1 24
Q ss_pred CcccEEEeCCCc----chHHHHHHHHHHhc
Q 007525 498 HKITQVVMNLPN----DATEFLDAFRGIYR 523 (600)
Q Consensus 498 ~~fD~VVmNpP~----~a~eFLdaa~~lLk 523 (600)
.+||.|+++..- ....+|.++.+..+
T Consensus 74 ~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 74 KSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 679999998653 23456666666544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-06 Score=74.70 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.++.....++.+|||+|||.|.++..+++.|.+|+++|+++.+++. . ++...+.+..+... +.
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~~------~~ 76 (161)
T PF13489_consen 14 ERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------R-NVVFDNFDAQDPPF------PD 76 (161)
T ss_dssp HHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------T-TSEEEEEECHTHHC------HS
T ss_pred HHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------h-hhhhhhhhhhhhhc------cc
Confidence 3444446788999999999999999999999999999999999998 1 13333333332221 25
Q ss_pred CcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 498 HKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 498 ~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+.||.|++.--- ....+|..+.++++++ |++.+..+..
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg--------G~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPG--------GYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEE--------EEEEEEEEBT
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCC--------CEEEEEEcCC
Confidence 789999985321 2467899999999986 5777777654
|
... |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-06 Score=95.29 Aligned_cols=100 Identities=25% Similarity=0.223 Sum_probs=87.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++-+|||.+|++|--+|..|+. | .+|+|+|+|+.+++..++|++.|++++.++...+||.-.+-... .....|
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--~~~~~F 184 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--MVAKFF 184 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--cccccc
Confidence 456778999999999999999985 3 48999999999999999999999999999999999998875421 113679
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|=+||-.+...|||+|.+.++.+
T Consensus 185 DvIDLDPyGs~s~FLDsAvqav~~g 209 (525)
T KOG1253|consen 185 DVIDLDPYGSPSPFLDSAVQAVRDG 209 (525)
T ss_pred ceEecCCCCCccHHHHHHHHHhhcC
Confidence 9999999888889999999999876
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.8e-06 Score=85.95 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=66.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|.+++|+.||.|+++..+++.. ++|+|+|.+|+|++.+++++.. .++++++++|..++...+.. ....+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~--~~~~v 91 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE--GLGKV 91 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc--CCCcc
Confidence 4578899999999999999999873 6999999999999999988754 35799999999998654321 11269
Q ss_pred cEEEeCCCc
Q 007525 501 TQVVMNLPN 509 (600)
Q Consensus 501 D~VVmNpP~ 509 (600)
|.|++|+=-
T Consensus 92 DgIl~DLGv 100 (296)
T PRK00050 92 DGILLDLGV 100 (296)
T ss_pred CEEEECCCc
Confidence 999988754
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.1e-06 Score=79.90 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=76.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.+|||+|||.|.++..+++.+ .+|+++|+++.+++.++.+.. . ++.++.+|+.+... +.+.||.|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d~~~~~~------~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----E-NVQFICGDAEKLPL------EDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecchhhCCC------CCCceeEE
Confidence 45689999999999999999875 478999999999999887654 2 48899999876531 24679999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++-.. ....++..+.++++++ |++-+-++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~~~--------G~l~~~~~~~ 138 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLKPG--------GLLAFSTFGP 138 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcCCC--------cEEEEEeCCc
Confidence 987543 2357889999999886 4666555543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=86.60 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=72.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.++++...+ +++++.+|+.+... ..+.||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence 46789999999999999998875 469999999999999999987533 37789999876421 2457999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
|+++... .....+.++.++|+++
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCC
Confidence 9986532 2346789999999986
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.5e-05 Score=80.90 Aligned_cols=95 Identities=16% Similarity=0.283 Sum_probs=78.1
Q ss_pred CCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
....||.+|+|.|..+..+++. + .+|+++|++|..++.++++...++ + +.+++++.+|++.+++. ..++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-----~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-----RDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-----CCCCc
Confidence 4568999999999999988885 3 589999999999999999987653 2 35799999999999854 24689
Q ss_pred cEEEeCCCc----------chHHHHH-HHHHHhcCC
Q 007525 501 TQVVMNLPN----------DATEFLD-AFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~----------~a~eFLd-aa~~lLk~~ 525 (600)
|+|++|.+. ...+|+. .+.+.|+++
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 999999633 1458887 888899876
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.8e-06 Score=88.59 Aligned_cols=77 Identities=26% Similarity=0.266 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+-.+.+|||+|||+|-+++.+|+.|+ +|+|+|-+.-| +.+++.++.|++++.|+++.+.+.+.. + |.+++|.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--L----P~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--L----PVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--c----CccceeE
Confidence 45789999999999999999999986 99999999888 999999999999999999999999872 1 2478999
Q ss_pred EEeCC
Q 007525 503 VVMNL 507 (600)
Q Consensus 503 VVmNp 507 (600)
||..-
T Consensus 131 IvSEW 135 (346)
T KOG1499|consen 131 IVSEW 135 (346)
T ss_pred Eeehh
Confidence 99654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.4e-06 Score=81.39 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=63.9
Q ss_pred CCCCeEEEEeeechHHHHHHhh----CC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK----IV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk----kg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.++.+|||+|||+|.++..+++ .| .+|+|+|+++++++.+++++..+++ .+..+|+..+.. ..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~------~~~ 128 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA------EGE 128 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc------cCC
Confidence 4678999999999999998875 23 4999999999999999988765554 444444433311 146
Q ss_pred cccEEEeCCCcc------hHHHHHHHHHHhc
Q 007525 499 KITQVVMNLPND------ATEFLDAFRGIYR 523 (600)
Q Consensus 499 ~fD~VVmNpP~~------a~eFLdaa~~lLk 523 (600)
+||.|+++.--. ..+++.++.++++
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 899999985321 2356777777665
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=83.03 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=69.9
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
++|++. +.+++.|+++|+|.|.++.++++++.+|+|+|+++..++.|++... .. ++++++++|+..+--.-.
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~-~n~~vi~~DaLk~d~~~l--- 93 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PY-DNLTVINGDALKFDFPSL--- 93 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cc-cceEEEeCchhcCcchhh---
Confidence 456654 6678999999999999999999999999999999999999998765 23 359999999987631100
Q ss_pred cCCcccEEEeCCCcc
Q 007525 496 KAHKITQVVMNLPND 510 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~ 510 (600)
..++.||.|+|+.
T Consensus 94 --~~~~~vVaNlPY~ 106 (259)
T COG0030 94 --AQPYKVVANLPYN 106 (259)
T ss_pred --cCCCEEEEcCCCc
Confidence 1579999999996
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=83.77 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|+.|||+||+-|+-+..+|.. ...|+|+|+++.-++.++.|+++.|+.+ +.+++.|+........ ...|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~----~~~f 157 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKP----ESKF 157 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHH----TTTE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecccccccccc----cccc
Confidence 568999999999999999999875 2599999999999999999999999997 8888899998865432 3469
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|.|++|+|.+
T Consensus 158 d~VlvDaPCS 167 (283)
T PF01189_consen 158 DRVLVDAPCS 167 (283)
T ss_dssp EEEEEECSCC
T ss_pred chhhcCCCcc
Confidence 9999999985
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=84.12 Aligned_cols=110 Identities=23% Similarity=0.174 Sum_probs=84.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|.+|+|+|||+|.++..||..|+ +|||+|-+ ++.+++++=++-|++.++|.++.|.+.+.- .+++.|++|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-------LPEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-------LPEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-------CchhccEEE
Confidence 688999999999999999999985 99999988 467899999999999999999999998763 257899999
Q ss_pred eCCCcch------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPNDA------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~~a------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
..|=... .+-.-.+++.+++...- --..+.||.--|+.+
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkM-fPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLKPNGKM-FPTVGDIHLAPFSDE 293 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcCCCCcc-cCcccceeecccchH
Confidence 8875532 23223456777776211 112467898777654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.7e-05 Score=77.22 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=86.6
Q ss_pred CCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
...+++|+|..+|+=++..|.. +++|+|+|+|+++++...+=.+..|+..+|.++.|++-+.+.++.+....++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5789999999999999888874 6799999999999999999999999999999999999999999887655678999
Q ss_pred EEeCCCcch-HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
+++|-=... ..+.+..+++++.+
T Consensus 153 aFvDadK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 153 AFVDADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred EEEccchHHHHHHHHHHHhhcccc
Confidence 999853221 26778888998876
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.2e-06 Score=91.82 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=69.8
Q ss_pred eeecChhHHHHH--HHHhcCC-----CCCeEEEEeeechHHHHHHhhCC----------CEEEEEeCcHHHHHHHHHHHH
Q 007525 407 IYWNSKLATERQ--RLLSGFN-----FKDVVCDVFAGVGPICIPAAKIV----------KRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 407 fy~n~Rl~tEr~--Riv~~l~-----~ge~VLDlfAGvG~FaIpaAkkg----------~~V~AvDiNP~Ave~l~eNak 469 (600)
-|+.|...++.. .+..... .+.+|+|.+||+|.|.++++.+. ..++|+|+++.++..++.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 466777666651 2222211 34589999999999999998631 369999999999999999998
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
..+.- .+.+.+.|.......... ...+.||+||.|||+..
T Consensus 85 ~~~~~-~~~i~~~d~l~~~~~~~~-~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 85 EFALL-EINVINFNSLSYVLLNIE-SYLDLFDIVITNPPYGR 124 (524)
T ss_pred hcCCC-Cceeeecccccccccccc-cccCcccEEEeCCCccc
Confidence 77622 255666664432111011 11357999999999964
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=82.58 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCCeEEEEeeechHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.+.+|||+|||+|.++..+++. ++.|+|+|+++.+++.++++. . ++.+..+|+.+.. + ..+.|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~lp---~---~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHRLP---F---ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeecccCC---C---cCCce
Confidence 4578999999999999988764 247999999999999987652 3 3788889987642 1 24679
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+... +..++.++.++|+++
T Consensus 153 D~I~~~~---~~~~~~e~~rvLkpg 174 (272)
T PRK11088 153 DAIIRIY---APCKAEELARVVKPG 174 (272)
T ss_pred eEEEEec---CCCCHHHHHhhccCC
Confidence 9998754 234567889999986
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.7e-06 Score=74.20 Aligned_cols=57 Identities=33% Similarity=0.313 Sum_probs=51.0
Q ss_pred eEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 429 VVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
+|+|+|||+|.+++.+++.+ ++|+++|.+|.+++.+++|++.|++.+ +.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 58999999999999999875 379999999999999999999999976 8888876654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=85.82 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=86.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhh--CC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAK--IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAk--kg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.++|++|+||||--|+=+.++|. ++ ..|+|+|.|..-++.++.|+.+.|+.| ..+.+.|+++|....+ .++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~----~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF----PGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc----Cccc
Confidence 57899999999999988877775 33 589999999999999999999999997 7789999998864433 3489
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|+|++|-|.++ .+.|..|..+++.+ | |-||.-+.-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G---G------vLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG---G------VLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC---c------EEEEEeeec
Confidence 99999999864 14567778887764 3 667776653
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2e-05 Score=81.62 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=86.5
Q ss_pred eccEEEEEecCeeeecChhHHHHHHHHh--cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 395 FHHLSLFRCFDTIYWNSKLATERQRLLS--GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~Rl~tEr~Riv~--~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
..|..|.-|++.-+..|.+.. +.|++ .++++++||++|-|+|..+..+..+|++|+|+|++|.++..+.+..+---
T Consensus 27 ~~~~kfnkd~GQHilkNp~v~--~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 27 SGGSKFNKDFGQHILKNPLVI--DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred ccCcccccccchhhhcCHHHH--HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 356788888888777664332 34443 38899999999999999999999999999999999999999999876555
Q ss_pred CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 473 LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 473 l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
.+++.+++.||....- ...||.+|.|+|+.
T Consensus 105 ~~~kLqV~~gD~lK~d--------~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 105 KSGKLQVLHGDFLKTD--------LPRFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeEEecccccCC--------CcccceeeccCCcc
Confidence 5688999999986531 35699999999984
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=73.81 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCC---CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKL---EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl---~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
......||=+|.|.|..+-.+.+.. .+|+++||+|..++.+++-...... +.+++++.+|++.++++. ..
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~ 148 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE 148 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence 3467899999999999999999875 6999999999999999997765432 347999999999999752 34
Q ss_pred -cccEEEeCCCc--------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhccc
Q 007525 499 -KITQVVMNLPN--------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAV 564 (600)
Q Consensus 499 -~fD~VVmNpP~--------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~ 564 (600)
+||+|++|++. .+.+|++.+.+.|+++ |++.+..-+.... ......+.+.+.....
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~--------Gv~v~~~~~~~~~--~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD--------GVLVLQAGSPFLH--PELFKSILKTLRSVFP 213 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE--------EEEEEEEEETTTT--HHHHHHHHHHHHTTSS
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC--------cEEEEEccCcccc--hHHHHHHHHHHHHhCC
Confidence 89999998765 2479999999999986 5666665333322 2344555556655433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.2e-05 Score=84.46 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+..+||+|||.|.|.+.+|+.. ..++|+|+....+..+.+.++..++.| +.++++|+..+... + +..++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~-~---~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILND-L---PNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHh-c---CcccccEE
Confidence 57899999999999999999973 589999999999999999999999987 88999998765543 3 24679999
Q ss_pred EeCCCc------------chHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 504 VMNLPN------------DATEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 504 VmNpP~------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
.++.|. ...+|++.+.++|+++ |.||+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g--------G~i~~ 460 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN--------GNLVF 460 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCC--------CEEEE
Confidence 998885 2358999999999987 57775
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.6e-05 Score=76.76 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=79.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH-------cC----CCCcEEEEEcChHHHHHHHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL-------NK----LEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl-------Ng----l~nrV~~i~gDare~l~~l~~ 493 (600)
.++.+||+.+||-|.-++.+|.+|..|+|+|+++.|++.+.+.... +. -...|+++++|.+++-...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-- 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-- 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc--
Confidence 4678999999999999999999999999999999999998652110 00 0125899999999863200
Q ss_pred hhcCCcccEEE-----eC-CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 494 SQKAHKITQVV-----MN-LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 494 ~~~~~~fD~VV-----mN-pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
...+.||.|+ += ||..-..+...+..+++++ +.+++.+|...
T Consensus 120 -~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg--------g~llll~~~~~ 167 (226)
T PRK13256 120 -NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN--------TQILLLVMEHD 167 (226)
T ss_pred -cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC--------cEEEEEEEecC
Confidence 0124677644 12 4455567889999999986 57888888643
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.9e-07 Score=76.37 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=57.4
Q ss_pred EEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC
Q 007525 431 CDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP 508 (600)
||+|||+|.++..++.. ..+++++|+|+.+++.+++.+...+..+ ...++.+..+..... ..++||.|++.-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD----PPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc----cccccceehhhhh
Confidence 79999999999999987 5799999999999999999888877654 555555554443210 1248999998543
Q ss_pred c----chHHHHHHHHHHhcCC
Q 007525 509 N----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 509 ~----~a~eFLdaa~~lLk~~ 525 (600)
- ....++..+.++++++
T Consensus 76 l~~l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS
T ss_pred HhhhhhHHHHHHHHHHHcCCC
Confidence 2 2346777777777775
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.2e-05 Score=75.98 Aligned_cols=140 Identities=20% Similarity=0.238 Sum_probs=94.7
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
++|++. +.+++.|+|+|+|.|.++-.+++.+.+|+++|+++..++.+++... ...+++++++|+.++-....
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~--- 93 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDL--- 93 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGH---
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHh---
Confidence 345554 4579999999999999999999999999999999999999998766 22359999999987632100
Q ss_pred cCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhh--------cc-cc
Q 007525 496 KAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVE--------VA-VN 565 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~--------~~-~~ 565 (600)
.......|+.|+|+.. ..++..+....+. |..+.+.+... ++.+|+-..-+. .. .-
T Consensus 94 ~~~~~~~vv~NlPy~is~~il~~ll~~~~~---------g~~~~~l~vq~-----e~a~rl~a~pg~~~~~~lsv~~q~~ 159 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISSPILRKLLELYRF---------GRVRMVLMVQK-----EVAERLLAKPGSKRYSRLSVLAQAF 159 (262)
T ss_dssp CSSSEEEEEEEETGTGHHHHHHHHHHHGGG---------CEEEEEEEEEH-----HHHHHHHTSTTSTTCSHHHHHHHHH
T ss_pred hcCCceEEEEEecccchHHHHHHHhhcccc---------cccceEEEEeh-----hhhhhccCCCCCCccchhhhhhhhh
Confidence 0134568999999853 3566666664432 47788887653 344444321110 00 12
Q ss_pred eEEEEeEEecCC
Q 007525 566 VEMRRVRLVAPG 577 (600)
Q Consensus 566 ~~v~~VR~VAP~ 577 (600)
.+++.+..|.|.
T Consensus 160 ~~i~~l~~v~~~ 171 (262)
T PF00398_consen 160 FDIKLLFKVPPS 171 (262)
T ss_dssp EEEEEEEEE-GG
T ss_pred hceeEecccCCc
Confidence 567777777755
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=69.35 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=60.5
Q ss_pred CCCeEEEEeeechH-HHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGP-ICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~-FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
++.+|+|+|||.|. ++..+++.|..|+|+|+||.+++.++++ + +.++.+|.++--..+. ..+|.|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y-----~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIY-----KNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHH-----hcCCEEE
Confidence 45789999999996 9999999999999999999999888776 2 5788899887543332 3588887
Q ss_pred e-CCCcchHHHHHH
Q 007525 505 M-NLPNDATEFLDA 517 (600)
Q Consensus 505 m-NpP~~a~eFLda 517 (600)
. .||......+-.
T Consensus 83 sirpp~el~~~~~~ 96 (134)
T PRK04148 83 SIRPPRDLQPFILE 96 (134)
T ss_pred EeCCCHHHHHHHHH
Confidence 4 777644443333
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-05 Score=74.66 Aligned_cols=70 Identities=27% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 430 VCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
|+|+||-=|+.++.+++.|. +|+|+|+|+..++.+++|++.+++.++|++..+|+.+.+.. .+..|.||+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEE
Confidence 78999999999999999984 89999999999999999999999999999999999988742 233566664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.6e-05 Score=77.39 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCCeEEEEeeechH----HHHHHhhC-------CCEEEEEeCcHHHHHHHHHHHH----HcC------------------
Q 007525 426 FKDVVCDVFAGVGP----ICIPAAKI-------VKRVYANDLNPYAVDYLERNSV----LNK------------------ 472 (600)
Q Consensus 426 ~ge~VLDlfAGvG~----FaIpaAkk-------g~~V~AvDiNP~Ave~l~eNak----lNg------------------ 472 (600)
++.+|+|+|||+|- +|+.+++. +.+|+|+|+|+.|++.|++++- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999994 56666653 3589999999999999998651 111
Q ss_pred ----CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC------CcchHHHHHHHHHHhcCC
Q 007525 473 ----LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL------PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 473 ----l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp------P~~a~eFLdaa~~lLk~~ 525 (600)
+.++|++.++|+.+... +.+.||.|++.- +......+..+.++|+++
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 22357888888876421 146799999832 112346889999999986
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.6e-05 Score=76.12 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHH-HHHHHcCC----------CCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLE-RNSVLNKL----------EKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~-eNaklNgl----------~nrV~~i~gDare~l~~l~ 492 (600)
..++.+||+.+||.|.-.+.+|.+|..|+|+|+++.|++.+. +|.....+ .++|+++++|.+++-..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-- 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-- 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence 567789999999999999999999999999999999999984 33221111 13589999999986432
Q ss_pred HhhcCCcccEEEe-----C-CCcchHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVM-----N-LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVm-----N-pP~~a~eFLdaa~~lLk~~ 525 (600)
..++||.|.= - ||..-..+...+..+++++
T Consensus 113 ---~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 113 ---DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp ---CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred ---hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 1236887761 2 4555568899999999986
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.1e-05 Score=80.59 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCeEEEEeeechH-HHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEcChH-HHHHHHHHhhcCCcccE
Q 007525 427 KDVVCDVFAGVGP-ICIPAAKI-VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGR-RFIDAMFASQKAHKITQ 502 (600)
Q Consensus 427 ge~VLDlfAGvG~-FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~gDar-e~l~~l~~~~~~~~fD~ 502 (600)
.-++||+|+|.-. +.|..++. |.+++|.|+++.++++|++|++.| +++++|+++...-. .++..+.. ..+.||.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceeeE
Confidence 3479999999774 46766664 789999999999999999999999 99999998866432 22222221 2468999
Q ss_pred EEeCCCcch
Q 007525 503 VVMNLPNDA 511 (600)
Q Consensus 503 VVmNpP~~a 511 (600)
.++|||..+
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999999864
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00051 Score=71.23 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=77.7
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||+|.+++.+...|. .|+|+|+++.|++..+.|.. + .++++|+.++..... ...+|.++++|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~----~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDF----IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhc----CCCCCEEEeCC
Confidence 589999999999998888876 68999999999999999863 1 156788877653211 24699999999
Q ss_pred CcchH--------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhc
Q 007525 508 PNDAT--------------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEV 562 (600)
Q Consensus 508 P~~a~--------------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~ 562 (600)
|.... ..+-.+.++++.. .|.+-+.+.++.-.. .......+...|...
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~-------~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~ 134 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEK-------KPKYFLLENVKGLLTHDNGNTLKVILNTLEEL 134 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHHHHHHHHHHhc-------CCCEEEEEcCcchhccCchHHHHHHHHHHHhC
Confidence 97421 1233444444432 266778888875321 123344454455443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.57 E-value=3.4e-05 Score=82.03 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=66.8
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHH-------HHHHHHHHcCCCC-cEEEEEcChHHHHHHHHHh
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVD-------YLERNSVLNKLEK-KIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave-------~l~eNaklNgl~n-rV~~i~gDare~l~~l~~~ 494 (600)
++++|+.|+|.|.|+|.|-+++|.-|+.|+|-||+-.++. ..+.|.+.-|... -+.++.+|...-.- .
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~--r-- 280 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL--R-- 280 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch--h--
Confidence 4889999999999999999999999999999999999888 3455666667543 35677777654321 1
Q ss_pred hcCCcccEEEeCCCcchHH
Q 007525 495 QKAHKITQVVMNLPNDATE 513 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~a~e 513 (600)
....||.||+|||+...+
T Consensus 281 -sn~~fDaIvcDPPYGVRe 298 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVRE 298 (421)
T ss_pred -hcceeeEEEeCCCcchhh
Confidence 135799999999997543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=71.74 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc---
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT--- 501 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD--- 501 (600)
.++|||+|||.|.+-..+|+.| ...+++|.++.|++.|+.-++.++++|.|++.+.|..+- ..+ ..+||
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~----~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL----SGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc----ccceeEEe
Confidence 3499999999999999999987 369999999999999999999999999999999998763 111 23455
Q ss_pred ------EEEeCC--Ccch-HHHHHHHHHHhcCC
Q 007525 502 ------QVVMNL--PNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ------~VVmNp--P~~a-~eFLdaa~~lLk~~ 525 (600)
.|=+.| |... .-+++...++|+++
T Consensus 142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred ecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 443332 2221 35788888888875
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00015 Score=73.71 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=44.3
Q ss_pred ecChhHHHHHHHHhcC---CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHH-HHHH
Q 007525 409 WNSKLATERQRLLSGF---NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDY-LERN 467 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~l---~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~-l~eN 467 (600)
|.+|-..--..+++.+ .+|.+|||+|||+|.|+.+++++|+ +|+|+|+++.++.. +++|
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC
Confidence 4455443335555543 3788999999999999999999974 89999999977765 4444
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00038 Score=70.05 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=82.2
Q ss_pred eEEEEeeechHHHHHHh-hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEE-EEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 429 VVCDVFAGVGPICIPAA-KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIE-VFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaA-kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~-~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
.||++|||+|+---.+- +.+++|+++|-||.+-+++.+.++.|+-.+ ++ ++.+|+++.. ++ .+.++|.||.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~-~l----~d~s~DtVV~T 152 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLP-QL----ADGSYDTVVCT 152 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCc-cc----ccCCeeeEEEE
Confidence 47999999997544333 457899999999999999999999997765 66 8999998864 32 25789999875
Q ss_pred CCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 507 LPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 507 pP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+-- ...+.|.++.++|+++ |.+...+-.+++.
T Consensus 153 lvLCSve~~~k~L~e~~rlLRpg--------G~iifiEHva~~y 188 (252)
T KOG4300|consen 153 LVLCSVEDPVKQLNEVRRLLRPG--------GRIIFIEHVAGEY 188 (252)
T ss_pred EEEeccCCHHHHHHHHHHhcCCC--------cEEEEEecccccc
Confidence 532 4568999999999997 5777777777653
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=72.76 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=62.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.-.|.+|||+|+|+|--+|.+|+.|+ .|++.|+.|.+...++.|++.|+++ |.+...|.-. ....+|+
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---------~~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---------SPPAFDL 145 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---------CCcceeE
Confidence 34689999999999999999999985 8999999999999999999999985 7888777643 1457998
Q ss_pred EEeC
Q 007525 503 VVMN 506 (600)
Q Consensus 503 VVmN 506 (600)
++..
T Consensus 146 ~Lag 149 (218)
T COG3897 146 LLAG 149 (218)
T ss_pred EEee
Confidence 8874
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00021 Score=69.16 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=39.7
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~e 466 (600)
+++++. -.+|++|||.|||+|+.+++|.+.|.+.+++|++++.++.+++
T Consensus 182 ~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 182 ERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 355544 5789999999999999999999999999999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00071 Score=68.54 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=73.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+..-..|+|+|||.|.-+-.++++ ++.|+|+|.+++|++.++.. +.| +++..+|.+++- +....|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~-------p~~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK-------PEQPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC-------CCCccc
Confidence 345678999999999999999988 57999999999999988543 454 899999999885 245688
Q ss_pred EEEeCC-----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 502 QVVMNL-----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 502 ~VVmNp-----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+++.|- |.+ .+.+......|.++ |++-|.-
T Consensus 95 llfaNAvlqWlpdH-~~ll~rL~~~L~Pg--------g~LAVQm 129 (257)
T COG4106 95 LLFANAVLQWLPDH-PELLPRLVSQLAPG--------GVLAVQM 129 (257)
T ss_pred hhhhhhhhhhcccc-HHHHHHHHHhhCCC--------ceEEEEC
Confidence 888873 333 35566777777775 5776653
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00033 Score=71.91 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=75.4
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||+|.+++-+.+.|. -|+|+|+++.|.+..+.|.. ...++|+.++-...+. . .+|+++..|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~---~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP---K-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH---H-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc---c-cceEEEecc
Confidence 589999999999999999885 79999999999999999975 6788999887654332 2 499999999
Q ss_pred Ccch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhcc
Q 007525 508 PNDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEVA 563 (600)
Q Consensus 508 P~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~~ 563 (600)
|... . ..+..++++++.- -|.+-+.+.++.-.. .....+.+.+.|.+..
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~-------~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lG 134 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL-------KPKYFLLENVPGLLSSKNGEVFKEILEELEELG 134 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH-------S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTT
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhc-------cceEEEecccceeeccccccccccccccccccc
Confidence 9731 0 1233444444321 145777888874321 1233455555555543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=69.39 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|.+|||+|||.|+++..++..|+ .|+|+|-++..+-..+-=.+.-|.+..+..+. ...+-++. .+.||.|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~------~~~FDtVF 187 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN------LGAFDTVF 187 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc------cCCcCEEE
Confidence 689999999999999999999986 79999998887665444333334333233332 33333322 35799887
Q ss_pred e-CCCc---chHHHHHHHHHHhcCC
Q 007525 505 M-NLPN---DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 m-NpP~---~a~eFLdaa~~lLk~~ 525 (600)
+ .--+ +..+.|..+...++++
T Consensus 188 ~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 188 SMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred EeeehhccCCHHHHHHHHHHhhCCC
Confidence 4 4333 2467889999999876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0006 Score=63.96 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+.+|+|+||++|--+|..+-+|+ +|+|+|.+|...+.+++|++.|.+-++..... ++-. .-+.||..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~------~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNG------EYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccc------cCCCcceEE
Confidence 688999999999999999999986 89999999999999999999998755433222 2211 135799999
Q ss_pred eCCCcchHHHHH-HHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPNDATEFLD-AFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~~a~eFLd-aa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
||--. -.+.|+ ..+.-|+. -.|-+|.|++.
T Consensus 98 iDCeG-CE~~l~v~~l~ky~q---------~ci~ihdwt~n 128 (156)
T PHA01634 98 MDCEG-CEEKLNVSMLKKYKQ---------WCIGIHDWTKN 128 (156)
T ss_pred EEccc-hHHhcCHHHHHHHHh---------heeeeehhhhh
Confidence 99643 233333 12333333 26889999875
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00051 Score=71.39 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl 470 (600)
++++.. -.+|++|||.|||+|+.++.|.+.|.+.+|+|++++.++.+++.+..
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 455554 46899999999999999999999999999999999999999998753
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.001 Score=68.03 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCC--CeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc---C-C----CCcEEEEEcChHHHHHHHHH
Q 007525 424 FNFK--DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN---K-L----EKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~g--e~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN---g-l----~nrV~~i~gDare~l~~l~~ 493 (600)
+++| .+|||+-||-|.=|+-+|..|++|+++|-||.....++..++.. . + ..+++++++|+.+++..
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~--- 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ--- 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC---
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh---
Confidence 3555 48999999999999999988999999999999888877654432 1 1 13699999999999861
Q ss_pred hhcCCcccEEEeCC
Q 007525 494 SQKAHKITQVVMNL 507 (600)
Q Consensus 494 ~~~~~~fD~VVmNp 507 (600)
+...||+|.+||
T Consensus 148 --~~~s~DVVY~DP 159 (234)
T PF04445_consen 148 --PDNSFDVVYFDP 159 (234)
T ss_dssp --HSS--SEEEE--
T ss_pred --cCCCCCEEEECC
Confidence 257899999998
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=66.15 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.....|||+|+|.|.+++.++++ +.+++..|+ |+.++.+++ .++|+++.+|.++-+ +. +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~--------P~-~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL--------PV-AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC--------SS-ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhh--------cc-cc
Confidence 556778999999999999999986 469999999 889988888 567999999998432 33 99
Q ss_pred EEEeC-----CC-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 502 QVVMN-----LP-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 502 ~VVmN-----pP-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
.|+|- .| ..+...|..+..+++++ . -+.|.++++.-.++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg-~-----~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPG-K-----DGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEEC-T-----TEEEEEEEEEECSS
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCC-C-----CCeEEEEeeccCCC
Confidence 98873 22 34568899999999864 1 15899998874433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0025 Score=66.52 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=79.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|.+||+.|.|+|.++..+|+.- .+++..|....-.+.+.+-.+.-++.++++++.-|+-..--. . ....+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~-~---ks~~a 178 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL-I---KSLKA 178 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-c---ccccc
Confidence 7899999999999999999999963 599999999999999999999999988899988776331100 0 13579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|.+|+|+- .+.++.+..+++.+
T Consensus 179 DaVFLDlPaP-w~AiPha~~~lk~~ 202 (314)
T KOG2915|consen 179 DAVFLDLPAP-WEAIPHAAKILKDE 202 (314)
T ss_pred ceEEEcCCCh-hhhhhhhHHHhhhc
Confidence 9999999983 56677777788765
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=64.53 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=77.4
Q ss_pred CeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 428 DVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..||-+|-|-|..+-.+++.. .+++.+||+|..++++++=...-. . +.|++++.+|+.++++.. ..+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCcCCE
Confidence 499999999999999999986 599999999999999998664422 2 358999999999999752 347999
Q ss_pred EEeCC--C---c---chHHHHHHHHHHhcCC
Q 007525 503 VVMNL--P---N---DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNp--P---~---~a~eFLdaa~~lLk~~ 525 (600)
||+|. | . +..+|++...++|+++
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 99974 2 2 2479999999999986
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0037 Score=62.63 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=58.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHH-------cCC-CCcEEEEEcChHHH--HHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVL-------NKL-EKKIEVFNMDGRRF--IDAM 491 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNakl-------Ngl-~nrV~~i~gDare~--l~~l 491 (600)
+.++++.+|+|||+|-..+.+|.. ++ +++|+|+.+...+.++.+.+. .+. ..++++.++|..+. ...+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 678999999999999999988864 55 699999999999888765543 333 23588899997543 3333
Q ss_pred HHhhcCCcccEEEeCCCcchHHHHHHHHHHhc
Q 007525 492 FASQKAHKITQVVMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 492 ~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk 523 (600)
. ...|+|++|--.+..+....+...+.
T Consensus 120 ~-----s~AdvVf~Nn~~F~~~l~~~L~~~~~ 146 (205)
T PF08123_consen 120 W-----SDADVVFVNNTCFDPDLNLALAELLL 146 (205)
T ss_dssp G-----HC-SEEEE--TTT-HHHHHHHHHHHT
T ss_pred h-----cCCCEEEEeccccCHHHHHHHHHHHh
Confidence 2 24799999865555555445544444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0095 Score=58.44 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
...|--|+++|.|+|.|+-.+.++| ..++++|.|++-+..|.+- ..+ +.+++||+.+.-..+. +.++..|
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~-~~ii~gda~~l~~~l~-e~~gq~~ 118 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPG-VNIINGDAFDLRTTLG-EHKGQFF 118 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCC-ccccccchhhHHHHHh-hcCCCee
Confidence 4567789999999999999999987 3799999999999987653 333 7799999988643332 2246779
Q ss_pred cEEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
|.||..+|-. ..+.|+.+...+..+
T Consensus 119 D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 119 DSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred eeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 9999988763 357788888777654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0012 Score=66.90 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl 470 (600)
+++++. -.+|++|||.|||+|+.++.+.+.|.+.+|+|++++.++.+.+.++.
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345543 56899999999999999999999999999999999999999888755
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=66.50 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=79.0
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
..++++++.+..++|+||--|+.++.+.+.+ ..++|.|+|+-.++.+.+|++.|++..++++.++|+...+.
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~------ 81 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE------ 81 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC------
Confidence 3567778888889999999999999999985 48999999999999999999999999999999999977664
Q ss_pred cCCcccEEEe-CCCcc-hHHHHHHHHHHhc
Q 007525 496 KAHKITQVVM-NLPND-ATEFLDAFRGIYR 523 (600)
Q Consensus 496 ~~~~fD~VVm-NpP~~-a~eFLdaa~~lLk 523 (600)
....+|.|++ ..=.. ..++|++...-++
T Consensus 82 ~~d~~d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 82 LEDEIDVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred ccCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 1335776554 33222 2356666555554
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0063 Score=64.58 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=67.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|.+++|+-+|-|+.+..+++. .++|+|+|.+|.|++.++++.+.. .+++++++++-.++...+.+. ....+|
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~-~~~~vD 94 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL-LVTKID 94 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc-CCCccc
Confidence 467889999999999999999986 379999999999999999987643 457999999998876544221 134689
Q ss_pred EEEeCCCcc
Q 007525 502 QVVMNLPND 510 (600)
Q Consensus 502 ~VVmNpP~~ 510 (600)
.|++|+=-+
T Consensus 95 gIl~DLGvS 103 (305)
T TIGR00006 95 GILVDLGVS 103 (305)
T ss_pred EEEEeccCC
Confidence 999887543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.002 Score=69.33 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+|.+++|+||+.|+|+-.++++|.+|+|||..+-+ .++.. ..+|+.+.+|+..+.+. ...+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~------~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP------RKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC------CCCCCEE
Confidence 4689999999999999999999999999999966522 22222 23699999999887531 4579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
++|.-........-+...+..+
T Consensus 275 VcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEecccCHHHHHHHHHHHHhcC
Confidence 9997665545555555566543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.002 Score=60.19 Aligned_cols=63 Identities=22% Similarity=0.120 Sum_probs=52.2
Q ss_pred CCCCeEEEEeeechHHHHHHhh-----C-CCEEEEEeCcHHHHHHHHHHHHHcC--CCCcEEEEEcChHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK-----I-VKRVYANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRF 487 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk-----k-g~~V~AvDiNP~Ave~l~eNaklNg--l~nrV~~i~gDare~ 487 (600)
.+...|+|+|||-|+++..++. . +.+|+|+|.|+..++.+.+.++..+ +..++.+..++..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 5678999999999999999998 4 6799999999999999999998877 544566666655443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.018 Score=58.74 Aligned_cols=161 Identities=16% Similarity=0.050 Sum_probs=95.0
Q ss_pred ecChhHHHHHHHHhc-----CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEE
Q 007525 409 WNSKLATERQRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVF 480 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i 480 (600)
||+.-+.=-..+++- +++|..||-+||.+|+..-+.+.. | ..|||+|.+|++.+.|-.=++.- . +|-++
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~-NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--P-NIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--T-TEEEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--C-ceeee
Confidence 777644322333321 678999999999999999999985 3 59999999999999988555442 2 48999
Q ss_pred EcChHHHHHHHHHhhcCCcccEEEeCCC--cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC----CC-CchhHHH
Q 007525 481 NMDGRRFIDAMFASQKAHKITQVVMNLP--NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA----RD-PEFDFHE 553 (600)
Q Consensus 481 ~gDare~l~~l~~~~~~~~fD~VVmNpP--~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~----~d-~~~di~e 553 (600)
-+||+.--.... .-+.+|.|+.|-. ..+.-++..+...|+++ | |..-..|+ .. +...+-.
T Consensus 128 l~DAr~P~~Y~~---lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~g---G-------~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 128 LEDARHPEKYRM---LVEMVDVIFQDVAQPDQARIAALNARHFLKPG---G-------HLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp ES-TTSGGGGTT---TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEE---E-------EEEEEEEHHHH-SSSSHHHHHH
T ss_pred eccCCChHHhhc---ccccccEEEecCCChHHHHHHHHHHHhhccCC---c-------EEEEEEecCcccCcCCHHHHHH
Confidence 999986432110 1347999999964 44556778888888876 2 22222232 11 1112222
Q ss_pred HHHHHHhhcccceEEEEeEEecCC-CcEEEEEEEe
Q 007525 554 RIRIALVEVAVNVEMRRVRLVAPG-KWMLCASFVL 587 (600)
Q Consensus 554 RI~~~L~~~~~~~~v~~VR~VAP~-K~mycvsFrl 587 (600)
...+.|.+ .++.+...-+..|- +.|+++..+.
T Consensus 195 ~e~~~L~~--~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 195 EEVKKLKE--EGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHHHHHHC--TTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred HHHHHHHH--cCCChheEeccCCCCCCcEEEEEEe
Confidence 22223332 24566666677774 5788776553
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0049 Score=63.29 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.|..|+=+|= --..||++|. ...+|+.+|+++..++++++.++..|+. |+++..|.++-++.-+ .++||.+
T Consensus 44 ~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFDVF 116 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BSEE
T ss_pred cCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCCEE
Confidence 5778876662 2355666665 3579999999999999999999999996 9999999999876422 4789999
Q ss_pred EeCCCcchH---HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 504 VMNLPNDAT---EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 504 VmNpP~~a~---eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+.|||++.. -|+.....+|+.. | ..-++.|+..+
T Consensus 117 ~TDPPyT~~G~~LFlsRgi~~Lk~~---g-----~~gy~~~~~~~ 153 (243)
T PF01861_consen 117 FTDPPYTPEGLKLFLSRGIEALKGE---G-----CAGYFGFTHKE 153 (243)
T ss_dssp EE---SSHHHHHHHHHHHHHTB-ST---T------EEEEEE-TTT
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCC---C-----ceEEEEEecCc
Confidence 999999853 5888888888753 2 23355676644
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0012 Score=57.76 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=41.4
Q ss_pred EEEeeechHHHHHHhhC---C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 431 CDVFAGVGPICIPAAKI---V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk---g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
|++|+..|..++.+++. . .+++++|.++. .+..+++++..++.++++++++|..+.+..+. ..++|.+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence 57888889888877753 2 37999999997 55556666667777779999999999887653 357999999
Q ss_pred CCCcchH---HHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 506 NLPNDAT---EFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 506 NpP~~a~---eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|-..... ..+..+...++++ ++|.+|.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~g--------gviv~dD 105 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPG--------GVIVFDD 105 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEE--------EEEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--------eEEEEeC
Confidence 9875433 3444444445543 5777764
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=63.96 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=78.7
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC-----CC-CcEEEEEcChHHHHHHHHHh
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-----LE-KKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg-----l~-nrV~~i~gDare~l~~l~~~ 494 (600)
.++..+.||-+|.|-|--.-.+.|.. .+|+-+|++|.+++.+++|..+-. ++ -++++++.|+..|++..
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--- 362 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--- 362 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence 35677899999999999888888874 499999999999999998865433 33 37999999999999763
Q ss_pred hcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
...||.||.|+|.- +.+|...+.+.+++.
T Consensus 363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~ 400 (508)
T COG4262 363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET 400 (508)
T ss_pred --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence 45899999999862 357777777777654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0036 Score=64.27 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCCCC-eEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKD-VVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge-~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++. .++|+|||+|--++-+|..-.+|+|+|+|+.+++.+++--...-..-...+...+..+++. ..+++|.
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g------~e~SVDl 103 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG------GEESVDL 103 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC------CCcceee
Confidence 34444 8999999999777778877789999999999999877643222111113344444444431 2568998
Q ss_pred EEeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 503 VVMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 503 VVmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++-=-. .-.+|...+.++|++. | +.|-++++..
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLRk~---G----g~iavW~Y~d 140 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLRKD---G----GLIAVWNYND 140 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcCCC---C----CEEEEEEccC
Confidence 8862110 1146889999999986 2 4788887764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0073 Score=59.58 Aligned_cols=95 Identities=18% Similarity=0.061 Sum_probs=74.3
Q ss_pred cCCCCC-eEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKD-VVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge-~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+.... .++|+|+|-|.=||++|-. ..+|+.+|.+..=+.+++.-+..-+++| ++++++.+.+.. ....
T Consensus 44 ~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~-------~~~~ 115 (184)
T PF02527_consen 44 FLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPE-------YRES 115 (184)
T ss_dssp CS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTT-------TTT-
T ss_pred hhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccc-------cCCC
Confidence 344444 8999999999999998864 3599999999999999999999999996 999999999811 2578
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
||.|++=--.....++.-+..+++++
T Consensus 116 fd~v~aRAv~~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 116 FDVVTARAVAPLDKLLELARPLLKPG 141 (184)
T ss_dssp EEEEEEESSSSHHHHHHHHGGGEEEE
T ss_pred ccEEEeehhcCHHHHHHHHHHhcCCC
Confidence 99999865555557777777777765
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0019 Score=72.42 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=71.4
Q ss_pred eecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhC----C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEE
Q 007525 408 YWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKI----V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEV 479 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkk----g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~ 479 (600)
|+.|+...+ -+++.+ .+..+|+|..||+|.|-+.+++. . +..+|.|+|+..+..++-|+-++|+...+..
T Consensus 168 fyTP~~v~~--liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 168 FYTPREVSE--LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred cCChHHHHH--HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 455664433 233333 46789999999999999988863 1 5799999999999999999999999743556
Q ss_pred EEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 480 FNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 480 i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
..+|...-.... .......||.|++|||.+.
T Consensus 246 ~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~ 276 (489)
T COG0286 246 RHGDTLSNPKHD-DKDDKGKFDFVIANPPFSG 276 (489)
T ss_pred cccccccCCccc-ccCCccceeEEEeCCCCCc
Confidence 666654322110 0012367999999999974
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=67.28 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=59.2
Q ss_pred CeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 428 DVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-+++|+|||+|.+.+-+...|. -+.|+|++|.|++..+.|... ..++.+|..++...... ...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~---~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALR---KSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhcc---ccCCCEEEeC
Confidence 4799999999999998888885 799999999999999998654 35677888776543221 1168999999
Q ss_pred CCcc
Q 007525 507 LPND 510 (600)
Q Consensus 507 pP~~ 510 (600)
||..
T Consensus 75 pPCQ 78 (328)
T COG0270 75 PPCQ 78 (328)
T ss_pred CCCc
Confidence 9984
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0038 Score=64.15 Aligned_cols=93 Identities=19% Similarity=0.354 Sum_probs=68.9
Q ss_pred eEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 429 VVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
+|+++|||+|....|+.+- +-+|+|+|-+|.|++..++|...+- .++..+..|...-- +...-..+.+|.|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~--~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPS--LKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchh--ccCCCCcCccceEE
Confidence 7999999999999999984 2589999999999999999988775 34666666653321 11111246788877
Q ss_pred eC------CCcchHHHHHHHHHHhcCC
Q 007525 505 MN------LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mN------pP~~a~eFLdaa~~lLk~~ 525 (600)
|= +|......++...++++++
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 63 3444557889999999986
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.004 Score=65.92 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=67.9
Q ss_pred EEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC
Q 007525 430 VCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP 508 (600)
|+|+|||+|.+++-+-..|. -|.|+|+++.|++..+.|.. + .++++|+.++...- ...+|+++..||
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence 68999999999999988887 57789999999999999852 2 34568888764321 235899999999
Q ss_pred cch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 509 NDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 509 ~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
... . ..+..+.++++.. -|.+-+.+.++.
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~-------~P~~~v~ENV~~ 111 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEK-------KPKFFLLENVKG 111 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhc-------CCCEEEeeccHH
Confidence 631 1 1233445555432 256777777763
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0092 Score=57.33 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-----HHHHHHhhcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-----IDAMFASQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-----l~~l~~~~~~ 497 (600)
.+.+|+|+||+.|+|+-.++.++ .+|+|+|+++. ....+ +..+++|..+. +..... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~-~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLP-ESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHG-TTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcc-ccc
Confidence 34899999999999999999987 69999999987 22333 66777776432 111111 012
Q ss_pred CcccEEEeCC-C----------cch----HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHH
Q 007525 498 HKITQVVMNL-P----------NDA----TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRI 557 (600)
Q Consensus 498 ~~fD~VVmNp-P----------~~a----~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~ 557 (600)
..+|.|++|- | ... ...+..+...++++ |.+-+=.|..... . .+...+..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~g--------G~~v~K~~~~~~~-~-~~~~~l~~ 154 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPG--------GTFVIKVFKGPEI-E-ELIYLLKR 154 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTT--------EEEEEEESSSTTS-H-HHHHHHHH
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCC--------CEEEEEeccCccH-H-HHHHHHHh
Confidence 5899999997 1 111 23455666777775 4555555553332 2 44444443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0071 Score=61.12 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=75.3
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcC--------C-CCcEEEEEcChHHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNK--------L-EKKIEVFNMDGRRFID 489 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNg--------l-~nrV~~i~gDare~l~ 489 (600)
.+.+|-..||+|+|+|+++-.+|+. |..+.++|.-|+.+++.++|+..-- + ..++.++.||++..-.
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 4789999999999999999988863 3445999999999999999997642 2 1347888999987643
Q ss_pred HHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 490 AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 490 ~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...+||+|-+. +.+.+...++...|+++
T Consensus 159 ------e~a~YDaIhvG--Aaa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 159 ------EQAPYDAIHVG--AAASELPQELLDQLKPG 186 (237)
T ss_pred ------ccCCcceEEEc--cCccccHHHHHHhhccC
Confidence 24689999998 55566777788888875
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0038 Score=63.55 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe-
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM- 505 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm- 505 (600)
..-|||++||+|--+-.+...|...+++||+|.|++.+.+ -+ +++ .++.+|.-+-++- ..++||-+|.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e---~eg--dlil~DMG~Glpf-----rpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-RE---LEG--DLILCDMGEGLPF-----RPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hh---hhc--CeeeeecCCCCCC-----CCCccceEEEe
Confidence 5689999999999998888889999999999999999987 22 222 4667776665532 3578998773
Q ss_pred -------C------CCcc-hHHHHHHHHHHhcCC
Q 007525 506 -------N------LPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 -------N------pP~~-a~eFLdaa~~lLk~~ 525 (600)
| -|.. -..|...+..+++.+
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 1 1221 235666677777765
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.02 Score=57.95 Aligned_cols=128 Identities=11% Similarity=0.048 Sum_probs=75.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++-+|.|+|||-+.+|-.. ..+.+|+..|+... | .. ++.+|.....- ..+.+|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n---~~--Vtacdia~vPL------~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N---PR--VTACDIANVPL------EDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S---TT--EEES-TTS-S--------TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C---CC--EEEecCccCcC------CCCceeEE
Confidence 345679999999999999433 34568999999752 2 22 45677766542 25789999
Q ss_pred EeCCCcc---hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCCCcE
Q 007525 504 VMNLPND---ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWM 580 (600)
Q Consensus 504 VmNpP~~---a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~m 580 (600)
|.-+--. -..||.++.++|+++ |.+.+.+-.-.-+. +...+ .....+++..+..-..+++.
T Consensus 127 VfcLSLMGTn~~~fi~EA~RvLK~~--------G~L~IAEV~SRf~~-------~~~F~-~~~~~~GF~~~~~d~~n~~F 190 (219)
T PF05148_consen 127 VFCLSLMGTNWPDFIREANRVLKPG--------GILKIAEVKSRFEN-------VKQFI-KALKKLGFKLKSKDESNKHF 190 (219)
T ss_dssp EEES---SS-HHHHHHHHHHHEEEE--------EEEEEEEEGGG-S--------HHHHH-HHHHCTTEEEEEEE--STTE
T ss_pred EEEhhhhCCCcHHHHHHHHheeccC--------cEEEEEEecccCcC-------HHHHH-HHHHHCCCeEEecccCCCeE
Confidence 9876443 258999999999986 68999887543221 11111 22234567777777889999
Q ss_pred EEEEEEeccc
Q 007525 581 LCASFVLPES 590 (600)
Q Consensus 581 ycvsFrlp~~ 590 (600)
+-+.|+....
T Consensus 191 ~~f~F~K~~~ 200 (219)
T PF05148_consen 191 VLFEFKKIRK 200 (219)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEEcCc
Confidence 9999998753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.061 Score=54.58 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=82.0
Q ss_pred CCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc-ccEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK-ITQV 503 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~-fD~V 503 (600)
+.+++|+|+|.|.=|||+|-. ..+|+-+|.+..-+.+++.=++.-+++| ++++++.+.++-.+ .. ||.|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~-------~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE-------KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc-------cccCcEE
Confidence 689999999999999998842 4579999999999999999999999997 99999999998532 23 9998
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+.=--+......+-...+++.+ |.+-.|-|.+..+
T Consensus 140 tsRAva~L~~l~e~~~pllk~~--------g~~~~~k~~~~~~ 174 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVG--------GGFLAYKGLAGKD 174 (215)
T ss_pred EeehccchHHHHHHHHHhcccC--------CcchhhhHHhhhh
Confidence 8765554455666667777764 3566666766544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.021 Score=54.41 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=60.0
Q ss_pred EEEeCcHHHHHHHHHHHHHcC--CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 452 YANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 452 ~AvDiNP~Ave~l~eNaklNg--l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+|+|+++++++.++++.+..+ ..++++++++|+.+..- ..+.||.|++..-- ...+++.++.++|+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 489999999999988765432 22359999999987631 24689999986411 2357899999999987
Q ss_pred CCCCCCCccEEEEEeccCCC
Q 007525 526 PEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 526 ~~~g~~~~p~IHvY~F~k~~ 545 (600)
|.+.+.+|.+.+
T Consensus 75 --------G~l~i~d~~~~~ 86 (160)
T PLN02232 75 --------SRVSILDFNKSN 86 (160)
T ss_pred --------eEEEEEECCCCC
Confidence 688889988643
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.074 Score=56.86 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=73.5
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhh------CCCEEEEEeCcHHHHHHHHHHHHHcCCCC-cEEEEEcChHHHHHH
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAK------IVKRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDA 490 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAk------kg~~V~AvDiNP~Ave~l~eNaklNgl~n-rV~~i~gDare~l~~ 490 (600)
..|+..+.++..++|+|||.|.=+-.+.. +...-+++|++.++++.+..++..-.+.+ .|..+++|-.+.+..
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh
Confidence 35666688888999999999987443322 24689999999999999999998544543 255599998887653
Q ss_pred HHHhhcCCcccEEEe------C-CCcchHHHHHHHHH-HhcCC
Q 007525 491 MFASQKAHKITQVVM------N-LPNDATEFLDAFRG-IYRDR 525 (600)
Q Consensus 491 l~~~~~~~~fD~VVm------N-pP~~a~eFLdaa~~-lLk~~ 525 (600)
+...........++. | .|..+..||..+.+ .+.++
T Consensus 148 l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 148 LKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred cccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 321001122333332 3 34457789999998 88765
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.38 Score=48.75 Aligned_cols=163 Identities=20% Similarity=0.170 Sum_probs=103.2
Q ss_pred ecChhHHHHHHHHhc-----CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 409 WNSKLATERQRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
||++-+.--..+++- +++|+.||=|||-+|+..-+.+.. | ..|||+|.+|.....|..=++. .+++-++.
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL 130 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPIL 130 (231)
T ss_pred eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeee
Confidence 777644322334432 679999999999999999999986 4 5899999999999988877665 23588999
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCC--CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC--CCCCchhHHHHHHH
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNL--PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK--ARDPEFDFHERIRI 557 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNp--P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k--~~d~~~di~eRI~~ 557 (600)
+||+.--.... .-+.+|.|..|- |..+.=+...+...|+++ | ..+|-+=.-+= ..++. .+-++--.
T Consensus 131 ~DA~~P~~Y~~---~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~---G---~~~i~iKArSIdvT~dp~-~vf~~ev~ 200 (231)
T COG1889 131 EDARKPEKYRH---LVEKVDVIYQDVAQPNQAEILADNAEFFLKKG---G---YVVIAIKARSIDVTADPE-EVFKDEVE 200 (231)
T ss_pred cccCCcHHhhh---hcccccEEEEecCCchHHHHHHHHHHHhcccC---C---eEEEEEEeecccccCCHH-HHHHHHHH
Confidence 99976432211 135689999886 555666778888888876 2 01333322221 12222 22221112
Q ss_pred HHhhcccceEEEEeEEecCC-CcEEEEEEE
Q 007525 558 ALVEVAVNVEMRRVRLVAPG-KWMLCASFV 586 (600)
Q Consensus 558 ~L~~~~~~~~v~~VR~VAP~-K~mycvsFr 586 (600)
.|.+ ..+++..+.+..|- +.|+.+..+
T Consensus 201 kL~~--~~f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 201 KLEE--GGFEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred HHHh--cCceeeEEeccCCcccceEEEEEe
Confidence 2322 23566777777774 567766543
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.023 Score=63.59 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHH------------HHH
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA------------MFA 493 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~------------l~~ 493 (600)
.-+++|+|||+|++++-+-..|. -|.|+|+++.|.+..+.|... -. ...++++|..++... ...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CC-ccceeccChhhCccccccccchhhhhhhhh
Confidence 34899999999999999877775 689999999999999988421 11 134556666655210 000
Q ss_pred hhcCCcccEEEeCCCcc
Q 007525 494 SQKAHKITQVVMNLPND 510 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~ 510 (600)
. ....+|+++..||..
T Consensus 165 ~-~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 165 Q-HIPDHDVLLAGFPCQ 180 (467)
T ss_pred c-cCCCCCEEEEcCCCC
Confidence 0 012589999999974
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.051 Score=58.22 Aligned_cols=106 Identities=13% Similarity=0.003 Sum_probs=75.9
Q ss_pred HHHh-cCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCC-----cEEEEEcChHHH-HHH
Q 007525 419 RLLS-GFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEK-----KIEVFNMDGRRF-IDA 490 (600)
Q Consensus 419 Riv~-~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~n-----rV~~i~gDare~-l~~ 490 (600)
.+++ ..++++.++||+||-|+=.+-.-+.| ...+++||...+++.+++..+..+-.. .+.++.+|.... +..
T Consensus 109 ~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d 188 (389)
T KOG1975|consen 109 VLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD 188 (389)
T ss_pred HHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH
Confidence 3444 36789999999999999999888877 489999999999999998765432111 278999998754 333
Q ss_pred HHHhhcCCcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 491 MFASQKAHKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
+.+. ...+||+|=+-.-. .+.-+|..+.+.|+++
T Consensus 189 ~~e~-~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 189 LLEF-KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred hccC-CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 3321 23449987654322 2445788888888886
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.033 Score=59.29 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH
Q 007525 411 SKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI 488 (600)
Q Consensus 411 ~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l 488 (600)
|-+..|--..+. ..++.+++|+-.|.|+.+..++++ +++|+|+|.+|+|++.++++++.. .+++.+++++-.++.
T Consensus 6 PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHH
Confidence 334445433333 567889999999999999999986 479999999999999998876533 567999999987776
Q ss_pred HHHHHhhcCCcccEEEeCCCcchHH
Q 007525 489 DAMFASQKAHKITQVVMNLPNDATE 513 (600)
Q Consensus 489 ~~l~~~~~~~~fD~VVmNpP~~a~e 513 (600)
..+........+|-|++|+=-++.+
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvSS~Q 107 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVSSMQ 107 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--HHH
T ss_pred HHHHHccCCCccCEEEEccccCHHH
Confidence 5443221245799999998665443
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.022 Score=61.02 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHc---------CCCCcEEEEEcChHHH-HHHHHHh
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLN---------KLEKKIEVFNMDGRRF-IDAMFAS 494 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklN---------gl~nrV~~i~gDare~-l~~l~~~ 494 (600)
++..|||||||-|+-..=..+.+ ..++|+|++..+++.+++..+.. +..=...++.+|+... +...+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78999999999999777666655 69999999999999999988321 1111367889998642 2211110
Q ss_pred hcCCcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
....||+|-|-.-- .+..+|..+...|+++
T Consensus 142 -~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 142 -RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp -TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred -cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 12489988875421 2557899999999986
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.11 Score=52.35 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~ 498 (600)
+.+|.+|+|+||--|.++-.++++. ..|+|+|+.|-.. +.+ |.++++|..+- ...+...-...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 7899999999999999999999873 3599999998532 344 88999987542 22222211234
Q ss_pred cccEEEeCCCc--ch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcc
Q 007525 499 KITQVVMNLPN--DA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVA 563 (600)
Q Consensus 499 ~fD~VVmNpP~--~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~ 563 (600)
.+|+|+.|+-. +. ...++-+...++++ |..-+=.|..++. .++...+++.... .
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~--------G~fv~K~fqg~~~--~~~l~~~~~~F~~-v 179 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG--------GSFVAKVFQGEDF--EDLLKALRRLFRK-V 179 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC--------CeEEEEEEeCCCH--HHHHHHHHHhhce-e
Confidence 47999976532 11 12345556666664 4566666665433 2444444433221 1
Q ss_pred cceEEEEeEEecCCCcEEEEEE
Q 007525 564 VNVEMRRVRLVAPGKWMLCASF 585 (600)
Q Consensus 564 ~~~~v~~VR~VAP~K~mycvsF 585 (600)
......--|+.|+-.+-+|..|
T Consensus 180 ~~~KP~aSR~~S~E~y~v~~~~ 201 (205)
T COG0293 180 KIFKPKASRKRSREIYLVAKGF 201 (205)
T ss_pred EEecCccccCCCceEEEEEecc
Confidence 1111122355555444445444
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.015 Score=60.02 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=46.3
Q ss_pred HHHHHHHHhc-CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 414 ATERQRLLSG-FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 414 ~tEr~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNakl 470 (600)
..+|.++++. .-.+..+||+||-.|..++.+|+. |+ .|+|+||++..++.|++|++.
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 3445444432 445678999999999999999997 54 899999999999999999864
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.021 Score=63.07 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=50.8
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD 483 (600)
.|||+++|+|-+++.|++.|+ .|+|+|.-.-+.+.|++-...||.+++|.+++.-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 589999999999999999876 9999999999999999999999999888887753
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.19 Score=52.40 Aligned_cols=91 Identities=8% Similarity=-0.101 Sum_probs=69.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH--cCCCC-cEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL--NKLEK-KIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl--Ngl~n-rV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..-++||=+|.|-|..+-.++|...+|+.|||+++.++.+++-.-. .+++| |++++. +..+ ...++||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~----~~~~~fD 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLD----LDIKKYD 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhh----ccCCcCC
Confidence 4558999999999999999999877999999999999999982211 13433 688775 1211 1136899
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+||+|... ..+|.....++|+++
T Consensus 142 VIIvDs~~-~~~fy~~~~~~L~~~ 164 (262)
T PRK00536 142 LIICLQEP-DIHKIDGLKRMLKED 164 (262)
T ss_pred EEEEcCCC-ChHHHHHHHHhcCCC
Confidence 99999433 368999999999986
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=51.79 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=70.7
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
....+||+|||-|..+..+|..-.+|+|.|+|+.|...|++ -|. +++ |..++-. .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~------~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQ------TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhc------cCCceEEEee
Confidence 45789999999999999999888899999999999776664 333 333 2223321 1457998876
Q ss_pred -CCCc---chHHHHHHHHHHhcCCCCC-CCCCccEEEEEeccC
Q 007525 506 -NLPN---DATEFLDAFRGIYRDRPED-AKFTFPKIHLYGFSK 543 (600)
Q Consensus 506 -NpP~---~a~eFLdaa~~lLk~~~~~-g~~~~p~IHvY~F~k 543 (600)
|.-. .....|..+...++++..- -..-+|+-|+.++..
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~ 200 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGG 200 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCC
Confidence 4432 3357889999999885100 012247778888865
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.058 Score=51.36 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=57.7
Q ss_pred EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC---Cc----------chHHHHH
Q 007525 450 RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL---PN----------DATEFLD 516 (600)
Q Consensus 450 ~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp---P~----------~a~eFLd 516 (600)
+|||.||.++|++..++.++.+++.++|++++..=..+... .. .+.+|.++.|+ |. +....|+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-i~---~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-IP---EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-Cc---cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 69999999999999999999999988899998765554322 21 24799999996 43 2457889
Q ss_pred HHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 517 AFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 517 aa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.++.+|+++ |+|-+.++..
T Consensus 77 ~al~lL~~g--------G~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPG--------GIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEE--------EEEEEEE--S
T ss_pred HHHHhhccC--------CEEEEEEeCC
Confidence 999999886 5666666554
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=53.39 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=72.5
Q ss_pred eecChhHHHH-HHHHhc---CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEE-E
Q 007525 408 YWNSKLATER-QRLLSG---FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVF-N 481 (600)
Q Consensus 408 y~n~Rl~tEr-~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i-~ 481 (600)
.|.+|-. .+ ..+++. ..+|.++||+||-+|+|+-.+..+|+ +|||+|..-.-+.+=-+| +.+|..+ +
T Consensus 58 ~yVSRG~-~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~ 130 (245)
T COG1189 58 PYVSRGG-LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLER 130 (245)
T ss_pred CccccHH-HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEec
Confidence 4556633 33 444543 45899999999999999999999975 999999976554442221 2244444 4
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCCCcchH-HHHHHHHHHhcCC
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNLPNDAT-EFLDAFRGIYRDR 525 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-eFLdaa~~lLk~~ 525 (600)
.+++.+....+ .+..|.+++|.-..+. ..|..+..+++++
T Consensus 131 tN~r~l~~~~~----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~ 171 (245)
T COG1189 131 TNVRYLTPEDF----TEKPDLIVIDVSFISLKLILPALLLLLKDG 171 (245)
T ss_pred CChhhCCHHHc----ccCCCeEEEEeehhhHHHHHHHHHHhcCCC
Confidence 56665544332 3478999999876543 5678888888764
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.022 Score=54.97 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=58.9
Q ss_pred HHHHhcCC--CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH
Q 007525 418 QRLLSGFN--FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487 (600)
Q Consensus 418 ~Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~ 487 (600)
+.+++++. +....+|+|+|-|.+.+.+|+.| ...+++|+||+.+.+.+-.+-+.++...+.+...|...+
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 34555533 44689999999999999999998 489999999999999999999999988788888777665
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.029 Score=60.76 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC------EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH-Hhh-
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK------RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF-ASQ- 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~------~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~-~~~- 495 (600)
+++|++||||||--|.=++.+....+ .|+|||.++.=...+++-++.-.-.+ +.+.+.|+..+..... ..+
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-LLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-eeeecccceeccccccccCch
Confidence 68999999999999988876665422 89999999999999998885544443 6666777655532211 000
Q ss_pred -cCCcccEEEeCCCcc
Q 007525 496 -KAHKITQVVMNLPND 510 (600)
Q Consensus 496 -~~~~fD~VVmNpP~~ 510 (600)
....||.|++|-|.+
T Consensus 232 ~~~~~fDrVLvDVPCS 247 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCS 247 (375)
T ss_pred hhhhhcceeEEecccC
Confidence 135799999999984
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.044 Score=55.78 Aligned_cols=62 Identities=27% Similarity=0.298 Sum_probs=44.4
Q ss_pred cChhHHHH-HHHHhcC-CC-CCeEEEEeeechHHHHHHhh--CC--CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 410 NSKLATER-QRLLSGF-NF-KDVVCDVFAGVGPICIPAAK--IV--KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 410 n~Rl~tEr-~Riv~~l-~~-ge~VLDlfAGvG~FaIpaAk--kg--~~V~AvDiNP~Ave~l~eNaklN 471 (600)
--|+..|- +|.+..+ .. .-++.|.|||.|++.--++- .. ..|+|-|+|+++++++++|+.+-
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 35778887 6776654 22 34799999999998665553 22 48999999999999999998754
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.066 Score=60.20 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=67.8
Q ss_pred eeeecChhHHHH-HHHHhc-CCCCCeEEEEeeechHHHHHHhhC---C---CEEEEEeCcHHHHHHHHHHHHHcCCCC-c
Q 007525 406 TIYWNSKLATER-QRLLSG-FNFKDVVCDVFAGVGPICIPAAKI---V---KRVYANDLNPYAVDYLERNSVLNKLEK-K 476 (600)
Q Consensus 406 kfy~n~Rl~tEr-~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkk---g---~~V~AvDiNP~Ave~l~eNaklNgl~n-r 476 (600)
.+|+.++...+- .+++.. ..++..|.|++||+|.|-+.+.+. | ..+++.|+++.++..++.|+.++++.. .
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t 274 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYAN 274 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccc
Confidence 455666654433 233332 336689999999999999876542 2 369999999999999999999888742 2
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
....++|...-... . ....||.|++|||...
T Consensus 275 ~~~~~~dtl~~~d~-~---~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 275 FNIINADTLTTKEW-E---NENGFEVVVSNPPYSI 305 (501)
T ss_pred cCcccCCcCCCccc-c---ccccCCEEeecCCccc
Confidence 33444543221110 0 1346999999999853
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=52.85 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=71.7
Q ss_pred CCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
...+.||+|||+|..+-.+... ..+|-.+|.++.-++.|++.+..++- ...++++.-..+|.+. ..+||.|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P~------~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTPE------EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccCC------CCcEeEEE
Confidence 3568999999999999877654 56999999999999999987655221 2367899999988753 46899998
Q ss_pred eCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+.--- .-.+||......|+++ |+|.+=+....
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~--------G~IvvKEN~~~ 165 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPN--------GVIVVKENVSS 165 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEE--------EEEEEEEEEES
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCC--------cEEEEEecCCC
Confidence 75432 1257888888888875 68888877643
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.14 Score=54.20 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=71.0
Q ss_pred CCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..-+|+|+.||.|..-+-+... ...|.-.|.+|..++..++-++.+|+++.+++.++||++.-.. .+ ....++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l-~~--l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL-AA--LDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh-hc--cCCCCC
Confidence 3457999999999999888764 2489999999999999999999999998669999999986322 11 134467
Q ss_pred EEEe-CC----Ccch--HHHHHHHHHHhcCC
Q 007525 502 QVVM-NL----PNDA--TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVm-Np----P~~a--~eFLdaa~~lLk~~ 525 (600)
++|+ .+ |... ...|.-+..++.++
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 7665 22 3221 23456666666664
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.019 Score=58.93 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=65.9
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-.+++|+|||+|-++.++-....+.+++|||..|++.+.+. ++-+ ..+++|+..|++.. ..++||.|+.-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~DLi~Aa 195 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFDLIVAA 195 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCcccchhhh
Confidence 47999999999999999988888999999999999877653 3422 45667777776532 25789988752
Q ss_pred --CCcch--HHHHHHHHHHhcCC
Q 007525 507 --LPNDA--TEFLDAFRGIYRDR 525 (600)
Q Consensus 507 --pP~~a--~eFLdaa~~lLk~~ 525 (600)
+|+.. ..++..+.+++.++
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCC
Confidence 34422 34667778888775
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.12 Score=53.47 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=54.4
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+...+...++|+|++||-=|++++.... +..++|.||+..+++.+..=+..-++.. ++...|...-. +.
T Consensus 99 if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~-------~~ 169 (251)
T PF07091_consen 99 IFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDP-------PK 169 (251)
T ss_dssp HCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSH-------TT
T ss_pred HHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccC-------CC
Confidence 4444566789999999999999998876 3699999999999999999998888864 55555554432 34
Q ss_pred CcccEEEe
Q 007525 498 HKITQVVM 505 (600)
Q Consensus 498 ~~fD~VVm 505 (600)
...|+.++
T Consensus 170 ~~~DlaLl 177 (251)
T PF07091_consen 170 EPADLALL 177 (251)
T ss_dssp SEESEEEE
T ss_pred CCcchhhH
Confidence 56787665
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.036 Score=55.77 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=34.4
Q ss_pred HHHhcCC--CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHH
Q 007525 419 RLLSGFN--FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLE 465 (600)
Q Consensus 419 Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~ 465 (600)
.|.+.+. ...+++|+|||.|..++.++..+..|+++|+|+..+...+
T Consensus 11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 11 WIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp HHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 4555565 6899999999999999988878889999999999887666
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.15 Score=53.73 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.|..|+=+| ----++|++|-- ..+|..+||+...++..++-++.-|+.| ++.+.-|.+.-+++-+ ..+||++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKFDVF 225 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhCCee
Confidence 355677776 566778888765 4699999999999999999999999987 9999999998776544 3689999
Q ss_pred EeCCCcch---HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA---TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a---~eFLdaa~~lLk~~ 525 (600)
+.|||.+. ..||..-...|+..
T Consensus 226 iTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 226 ITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred ecCchhhHHHHHHHHhccHHHhcCC
Confidence 99999974 24666666666654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.15 Score=51.32 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=77.8
Q ss_pred CCCCCe-EEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH--HhhcCC
Q 007525 424 FNFKDV-VCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF--ASQKAH 498 (600)
Q Consensus 424 l~~ge~-VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~--~~~~~~ 498 (600)
+..... ||+++||+|-.+...|+. ...=.--|.++.....++..+...++.|-...+..|+.+-.-... ......
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 555565 999999999999999986 357778899999999999999988888755667777754311000 000134
Q ss_pred cccEEEe-CC-----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVM-NL-----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVm-Np-----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.||.|++ |. ...+..++..+.++|+++ |.+-+|.
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g--------G~L~~YG 141 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPG--------GLLFLYG 141 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC--------CEEEEeC
Confidence 7898885 43 223456778888888875 5788884
|
The function of this family is unknown. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.5 Score=49.57 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-....+|.|+|||-+-+|. +...+|++.|+-+ +. -.++.+|.+...- .+++.|++
T Consensus 178 r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a--------------~~--~~V~~cDm~~vPl------~d~svDva 232 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA--------------VN--ERVIACDMRNVPL------EDESVDVA 232 (325)
T ss_pred CcCceEEEecccchhhhhh---ccccceeeeeeec--------------CC--CceeeccccCCcC------ccCcccEE
Confidence 3456789999999998876 4446899999864 32 2566788877542 26789999
Q ss_pred EeCCCcc---hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHH--HHhhcccceEEEEeEEecCCC
Q 007525 504 VMNLPND---ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRI--ALVEVAVNVEMRRVRLVAPGK 578 (600)
Q Consensus 504 VmNpP~~---a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~--~L~~~~~~~~v~~VR~VAP~K 578 (600)
|.-+--. -..|+.++.++|+.+ |.+.+-+.. .|+.. .+...+..++|.....---++
T Consensus 233 V~CLSLMgtn~~df~kEa~RiLk~g--------G~l~IAEv~----------SRf~dv~~f~r~l~~lGF~~~~~d~~n~ 294 (325)
T KOG3045|consen 233 VFCLSLMGTNLADFIKEANRILKPG--------GLLYIAEVK----------SRFSDVKGFVRALTKLGFDVKHKDVSNK 294 (325)
T ss_pred EeeHhhhcccHHHHHHHHHHHhccC--------ceEEEEehh----------hhcccHHHHHHHHHHcCCeeeehhhhcc
Confidence 9766432 358999999999987 345443332 22221 111122234444444444567
Q ss_pred cEEEEEEEecc
Q 007525 579 WMLCASFVLPE 589 (600)
Q Consensus 579 ~mycvsFrlp~ 589 (600)
+++.+.|..+.
T Consensus 295 ~F~lfefkK~~ 305 (325)
T KOG3045|consen 295 YFTLFEFKKTP 305 (325)
T ss_pred eEEEEEEecCC
Confidence 88888888754
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.58 Score=49.92 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+.+|+--|-|+.+-.+.++. ++++|+|.+|.|++.+++....++ +++.++++.-.++...+... ...++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~-~i~~v 97 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL-GIGKV 97 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc-CCCce
Confidence 5678999999999999999998874 589999999999999999988766 46999999877765543322 24578
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|-|++|+=-+
T Consensus 98 DGiL~DLGVS 107 (314)
T COG0275 98 DGILLDLGVS 107 (314)
T ss_pred eEEEEeccCC
Confidence 9999988543
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.18 Score=51.76 Aligned_cols=50 Identities=26% Similarity=0.241 Sum_probs=45.3
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
.-.+|++|+|.|+|+|+.++.+...|...+++|++++.++.+.+.+..+.
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 36689999999999999999999999999999999999999999887654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1 Score=37.32 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=56.8
Q ss_pred EEEEeeechHHH--HHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-HHHHHHhhcC-CcccEEEe
Q 007525 430 VCDVFAGVGPIC--IPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKA-HKITQVVM 505 (600)
Q Consensus 430 VLDlfAGvG~Fa--IpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-l~~l~~~~~~-~~fD~VVm 505 (600)
++|++||.|... ......+..++++|+++.++...+......+... +.++.+|.... +. + .. ..+|.+.+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~---~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLP--F---EDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCC--C---CCCCceeEEee
Confidence 999999999965 2222223589999999999999554443322221 67777777652 21 1 11 36888844
Q ss_pred CCCcc---hHHHHHHHHHHhcCC
Q 007525 506 NLPND---ATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP~~---a~eFLdaa~~lLk~~ 525 (600)
..... ....+..+.+.++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~ 148 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPG 148 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCC
Confidence 33321 256778888888764
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.34 Score=50.15 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=61.3
Q ss_pred EEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 431 CDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+..|.|+=.++..+.+...+.+++|+.|..++.|++|+... .+|.+.+.|+++.+..++. +..+=-.|++|||+-
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allP--P~~rRglVLIDPpYE 136 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLP--PPERRGLVLIDPPYE 136 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S---TTS-EEEEE-----
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCC--CCCCCeEEEECCCCC
Confidence 78999999999999988889999999999999999997653 3699999999999887763 234455899999985
Q ss_pred hH----HHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 511 AT----EFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 511 a~----eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.. ...+.+..+++.-.. | -++-+|=..
T Consensus 137 ~~~dy~~v~~~l~~a~kR~~~-G----~~~iWYPi~ 167 (245)
T PF04378_consen 137 QKDDYQRVVDALAKALKRWPT-G----VYAIWYPIK 167 (245)
T ss_dssp STTHHHHHHHHHHHHHHH-TT-S----EEEEEEEES
T ss_pred CchHHHHHHHHHHHHHHhcCC-c----EEEEEeecc
Confidence 32 345555666654321 1 356677654
|
; PDB: 2OO3_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.6 Score=44.03 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHH--HHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFI--DAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l--~~l~~~~~~ 497 (600)
+.++++|||+||-.|.++--|-++. ..|+++||-+-. -+.+ +.++++ |..+-. ..+++.-+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 6789999999999999999888863 589999986421 2333 566666 665432 233433356
Q ss_pred CcccEEEeCCC
Q 007525 498 HKITQVVMNLP 508 (600)
Q Consensus 498 ~~fD~VVmNpP 508 (600)
..+|.|+.|.-
T Consensus 135 r~VdvVlSDMa 145 (232)
T KOG4589|consen 135 RPVDVVLSDMA 145 (232)
T ss_pred CcccEEEeccC
Confidence 78999998863
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.94 Score=47.73 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=56.3
Q ss_pred CeEEEEeeechHHHH-HHhhC---CCEEEEEeCcHHHHHHHHHHHH-HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 428 DVVCDVFAGVGPICI-PAAKI---VKRVYANDLNPYAVDYLERNSV-LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 428 e~VLDlfAGvG~FaI-paAkk---g~~V~AvDiNP~Ave~l~eNak-lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+|+=+|||.=|++. .+|+. +..|.++|++|+|++.+++=++ ..++.+++.++++|+.+.... -..||+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d------l~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD------LKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc------cccCCE
Confidence 489989888777754 55544 4689999999999999998777 667888899999999876533 236999
Q ss_pred EEeCC-Cc----chHHHHHHHHHHhcCC
Q 007525 503 VVMNL-PN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNp-P~----~a~eFLdaa~~lLk~~ 525 (600)
|++-- .. ...+.++.+.+..+++
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 88753 33 2356788888877765
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.15 Score=57.75 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=70.0
Q ss_pred CeEEEEeeechHHHHHHhh------CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 428 DVVCDVFAGVGPICIPAAK------IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAk------kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.+|+=+|||-|+++-...+ +..++||+|-||.|+-.|+. .+....+++|+++.+|.+++-. +.++.|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a------p~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA------PREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC------chhhcc
Confidence 4688899999999654433 23589999999999999876 6666778899999999999852 135688
Q ss_pred EEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
.+|..+-.+ +.|=||.+.+.+++.
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCC
Confidence 888765442 467788888888875
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.39 Score=50.08 Aligned_cols=45 Identities=9% Similarity=0.243 Sum_probs=35.9
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch--------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA--------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a--------------------~eFLdaa~~lLk~~ 525 (600)
..++++|+.+++..+. .+++|+|++|||+.. .+++.++.++|+++
T Consensus 9 ~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~ 73 (284)
T PRK11524 9 KTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQ 73 (284)
T ss_pred CEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999986542 568999999999742 24778888888876
|
|
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.17 Score=59.40 Aligned_cols=49 Identities=29% Similarity=0.218 Sum_probs=43.8
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN 471 (600)
....+..++|-|||-|.+.+.+++.|+.|+|+|+||.|+-.++.-++.-
T Consensus 87 ~~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 87 TPFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred CcccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcc
Confidence 3456788999999999999999999999999999999999998877653
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.3 Score=46.54 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
..+||-.|||.|.++..+|++|..|.|||.+-.|+ +--|.-+|+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Ml--l~s~fiLn~ 100 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFML--LASNFILNH 100 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHH--HHHHHHHcc
Confidence 46899999999999999999999999999998884 444555564
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.3 Score=44.96 Aligned_cols=50 Identities=32% Similarity=0.333 Sum_probs=33.3
Q ss_pred EEeeech--HHHHHHh--hC--CCEEEEEeCcHHHHHHHHHH--HHHcCCCCcEEEEE
Q 007525 432 DVFAGVG--PICIPAA--KI--VKRVYANDLNPYAVDYLERN--SVLNKLEKKIEVFN 481 (600)
Q Consensus 432 DlfAGvG--~FaIpaA--kk--g~~V~AvDiNP~Ave~l~eN--aklNgl~nrV~~i~ 481 (600)
|+||++| ...+..+ .. +.+|+++|-+|..++.++.| +.+|+..+.++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 5555443 22 46999999999999999999 88886543344443
|
; PDB: 2PY6_A. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.87 Score=47.46 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=74.4
Q ss_pred HhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 421 LSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 421 v~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+..+.+|.. +..|+|+=-++-.+.+..-+..++|+-|.=+..++.|.. + +.++.+.++|++..+...+. +.++=
T Consensus 84 i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LP--P~erR 157 (279)
T COG2961 84 VRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLP--PKERR 157 (279)
T ss_pred HHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCC--CCCcc
Confidence 334566665 999999999998888888899999999999999999987 2 33699999999998876542 34445
Q ss_pred cEEEeCCCcchHH----HHHHHHHHhcC
Q 007525 501 TQVVMNLPNDATE----FLDAFRGIYRD 524 (600)
Q Consensus 501 D~VVmNpP~~a~e----FLdaa~~lLk~ 524 (600)
-.|++|||+-... .++.+...|+.
T Consensus 158 glVLIDPPfE~~~eY~rvv~~l~~~~kR 185 (279)
T COG2961 158 GLVLIDPPFELKDEYQRVVEALAEAYKR 185 (279)
T ss_pred eEEEeCCCcccccHHHHHHHHHHHHHHh
Confidence 6899999996542 34455555554
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.26 Score=50.87 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=57.2
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEc-ChHHHHHHHHHhhcCCc
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNM-DGRRFIDAMFASQKAHK 499 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~g-Dare~l~~l~~~~~~~~ 499 (600)
++-++||+|.| .-.|.-. ..|.+-++-|+++.|++.++.|+..| ++++.|++... |-...+..+.. ..+.
T Consensus 78 ~~i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~ 153 (292)
T COG3129 78 KNIRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNER 153 (292)
T ss_pred CceEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccce
Confidence 45578888655 4443222 13678999999999999999999999 88877776543 33333322221 2578
Q ss_pred ccEEEeCCCcch
Q 007525 500 ITQVVMNLPNDA 511 (600)
Q Consensus 500 fD~VVmNpP~~a 511 (600)
||.+++|||..+
T Consensus 154 yd~tlCNPPFh~ 165 (292)
T COG3129 154 YDATLCNPPFHD 165 (292)
T ss_pred eeeEecCCCcch
Confidence 999999999864
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.1 Score=45.75 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC-------CCCcEEEEEcChHHHHHHHHHhhc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-------LEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg-------l~nrV~~i~gDare~l~~l~~~~~ 496 (600)
..-.++|+|||-|.+.+.++-+- .-++|.||--...+|.++.+...+ +.| +-+..+++..++.+++..+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kg- 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKG- 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhc-
Confidence 34569999999999999999873 589999999999999999988765 554 8899999999998877531
Q ss_pred CCcccEEEeCCCcc----------hHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPND----------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~----------a~eFLdaa~~lLk~~ 525 (600)
.-.-+.+...-|.+ ....+.....+++.+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~g 176 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREG 176 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcC
Confidence 11123333333442 124567777777765
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.2 Score=45.07 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCCCeEEEEeee-chHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++|+=.|+| .|..++.+|+ .|++|+|+|.+++-.+.+++ -|- -.+++....+.+..+. +.+|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~----lGA---d~~i~~~~~~~~~~~~-----~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK----LGA---DHVINSSDSDALEAVK-----EIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH----hCC---cEEEEcCCchhhHHhH-----hhCc
Confidence 7789998888775 7788999998 58999999999999998775 232 2445533222332221 2388
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.||---| ..-++.+.++++.+ |++.+-...
T Consensus 232 ~ii~tv~---~~~~~~~l~~l~~~--------G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG---PATLEPSLKALRRG--------GTLVLVGLP 261 (339)
T ss_pred EEEECCC---hhhHHHHHHHHhcC--------CEEEEECCC
Confidence 7776555 33457778888876 456665554
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.92 Score=40.49 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=63.0
Q ss_pred echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHH
Q 007525 436 GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEF 514 (600)
Q Consensus 436 GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eF 514 (600)
|+|.+++.+|+. |++|+++|.++.-.+.+++ .|.. .++..+-.++..++.+-.....+|.|+--.. ....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--SGDT 71 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSS--SHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEecC--cHHH
Confidence 689999999985 7899999999999888765 4533 3344433333333222112346897776544 2467
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 515 LDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 515 Ldaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.+..+++++ +++.++.+..
T Consensus 72 ~~~~~~~l~~~--------G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPG--------GRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEE--------EEEEEESSTS
T ss_pred HHHHHHHhccC--------CEEEEEEccC
Confidence 88899999886 6899998877
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.03 E-value=2 Score=45.74 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=51.0
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
.|++||--|+|.| .+++.+|++|+++..+|+|++..+...+.++.+| ++..+.+|.-+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence 5899999999988 6888999999999999999999999999999886 47888888743
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=88.98 E-value=5.9 Score=40.52 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=71.3
Q ss_pred CCCeEEEEeeech----HHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcCh-HHHHHHHHHhhcCC
Q 007525 426 FKDVVCDVFAGVG----PICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG-RRFIDAMFASQKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG----~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDa-re~l~~l~~~~~~~ 498 (600)
.-..+++..|+.| ++++.+|.+ |.++++|--+++.....++.+...++.+.++|+.++. .+.+..+ .
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~------~ 114 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL------K 114 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc------c
Confidence 3467899977654 345555544 6799999999999888888888888887789999985 5566543 3
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.+|.++.|-= ..+|...++++++-+..+ .+|-||.
T Consensus 115 ~iDF~vVDc~--~~d~~~~vl~~~~~~~~G-----aVVV~~N 149 (218)
T PF07279_consen 115 GIDFVVVDCK--REDFAARVLRAAKLSPRG-----AVVVCYN 149 (218)
T ss_pred CCCEEEEeCC--chhHHHHHHHHhccCCCc-----eEEEEec
Confidence 5899999863 356665666666654322 3555553
|
The function of this family is unknown. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.89 Score=46.20 Aligned_cols=45 Identities=2% Similarity=0.029 Sum_probs=35.7
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------------~eFLdaa~~lLk~~ 525 (600)
++++++|+.+.++.+ +++++|+||.|||+.. .+++.++.++|+++
T Consensus 2 ~~l~~gD~le~l~~l----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpg 65 (227)
T PRK13699 2 SRFILGNCIDVMARF----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKD 65 (227)
T ss_pred CeEEechHHHHHHhC----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCC
Confidence 368899999998765 3678999999999951 24567788888875
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.39 Score=52.36 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=77.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.+.++..++|++||+|+.+...+.. ++.+++++.|+..+.....-....++.++..+..+|...-. + .+..||
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~---f---edn~fd 180 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP---F---EDNTFD 180 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC---C---CccccC
Confidence 3678889999999999999999986 57999999999988887777777777765555444443322 1 245677
Q ss_pred EEEe-C----CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 502 QVVM-N----LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 ~VVm-N----pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+-. + .|. ....+.++.+.++++ |..-+|+|.+.
T Consensus 181 ~v~~ld~~~~~~~-~~~~y~Ei~rv~kpG--------G~~i~~e~i~~ 219 (364)
T KOG1269|consen 181 GVRFLEVVCHAPD-LEKVYAEIYRVLKPG--------GLFIVKEWIKT 219 (364)
T ss_pred cEEEEeecccCCc-HHHHHHHHhcccCCC--------ceEEeHHHHHh
Confidence 5432 2 232 356777888887775 68889999764
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.00 E-value=6.5 Score=41.18 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=81.3
Q ss_pred EecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHh-----cCCCCCeEEEEeeechHHHHHHhhC-C--CEEEEE
Q 007525 383 LAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLS-----GFNFKDVVCDVFAGVGPICIPAAKI-V--KRVYAN 454 (600)
Q Consensus 383 LaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~-----~l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~Av 454 (600)
+||+....++....-|.|++ ||+--+.-..-|+. .+++|..||-|+|+.|+..-+.+.. | .-|||+
T Consensus 114 vYgEkRisv~~~~~kvEyRV------WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAV 187 (317)
T KOG1596|consen 114 VYGEKRISVENEDGKVEYRV------WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAV 187 (317)
T ss_pred ccCceEEEeecCCCcEEEEE------eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEE
Confidence 55655443333333455554 77642221122221 2789999999999999998888875 3 479999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc--hHHHHHHHHHHhcCC
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND--ATEFLDAFRGIYRDR 525 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~--a~eFLdaa~~lLk~~ 525 (600)
|.++++=..|..=++ +-.| |.++-.||+.--+.-. .-.-+|.|+.|.+.. +.-..-.+.-.|+++
T Consensus 188 Efs~rsGRdL~nmAk--kRtN-iiPIiEDArhP~KYRm---lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~g 254 (317)
T KOG1596|consen 188 EFSHRSGRDLINMAK--KRTN-IIPIIEDARHPAKYRM---LVGMVDVIFADVAQPDQARIVALNAQYFLKNG 254 (317)
T ss_pred EecccchHHHHHHhh--ccCC-ceeeeccCCCchheee---eeeeEEEEeccCCCchhhhhhhhhhhhhhccC
Confidence 999999888765443 3344 8888899876432100 123589999987653 322223445556665
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=0.93 Score=47.95 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=59.1
Q ss_pred CeEEEEeeech--HHHHHHh--hC------CCEEEEEeCcHHHHHHHHHHHH----HcC---------------------
Q 007525 428 DVVCDVFAGVG--PICIPAA--KI------VKRVYANDLNPYAVDYLERNSV----LNK--------------------- 472 (600)
Q Consensus 428 e~VLDlfAGvG--~FaIpaA--kk------g~~V~AvDiNP~Ave~l~eNak----lNg--------------------- 472 (600)
-+|+.++|.+| +++|++. .. ..+|+|.|||+.+++.|++.+= ..+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 5555443 31 2489999999999999998731 001
Q ss_pred -----CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC--CCc----chHHHHHHHHHHhcCC
Q 007525 473 -----LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN--LPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 473 -----l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN--pP~----~a~eFLdaa~~lLk~~ 525 (600)
+.+.|.+...|..+.. . ...+.||.|++- +-+ .....+..+...|+++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~---~--~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ---W--AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred EEChHHHccCEEEcccCCCCC---C--ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 1133445555543310 0 013579999872 112 2456888999999886
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.31 E-value=7.5 Score=40.18 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=76.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..+|.+||.+|-|-|...-.+-.+. .+=+-+|.+|+.++.++.+.-..+ .+|.++.+-..+.+..+. ++.||-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~----d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLP----DKHFDG 172 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhcccc----ccCcce
Confidence 4689999999999999887776653 567779999999999998765443 358999999999887764 567999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
|.-|--. ....|-+.+.++++++
T Consensus 173 I~yDTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 173 IYYDTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred eEeechhhHHHHHHHHHHHHhhhcCCC
Confidence 9998642 2357888999999986
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.7 Score=47.83 Aligned_cols=53 Identities=28% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHhc------CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHH
Q 007525 414 ATERQRLLSG------FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 414 ~tEr~Riv~~------l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~e 466 (600)
+.|-+++.+. +.+-+.|+|+|+|.|+.+-.++-+ |-.|+|||-|....+.+++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4455555543 345678999999999999988865 7799999999777765543
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=1.5 Score=51.53 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=65.2
Q ss_pred eEEEEeeechHHH---HHHhhC-C--CEEEEEeCcHHHHHHHHHHHH-HcCC-------CCcEEEEEcChHHHHHHHH-H
Q 007525 429 VVCDVFAGVGPIC---IPAAKI-V--KRVYANDLNPYAVDYLERNSV-LNKL-------EKKIEVFNMDGRRFIDAMF-A 493 (600)
Q Consensus 429 ~VLDlfAGvG~Fa---IpaAkk-g--~~V~AvDiNP~Ave~l~eNak-lNgl-------~nrV~~i~gDare~l~~l~-~ 493 (600)
+|+=+|||=|++. +.|++. + .+|+|+|-||.++.++..+.+ .+.. .++|++++.|+|++-.... .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999985 444443 3 489999999877666655532 2234 3469999999999832100 0
Q ss_pred h----hcCCcccEEEeCCCcc------hHHHHHHHHHHhcC
Q 007525 494 S----QKAHKITQVVMNLPND------ATEFLDAFRGIYRD 524 (600)
Q Consensus 494 ~----~~~~~fD~VVmNpP~~------a~eFLdaa~~lLk~ 524 (600)
+ ...+++|+||.-+-.+ +.|=|+.+.+.|++
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 0 0013699999876542 56888888888875
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=84.34 E-value=2 Score=46.38 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=56.6
Q ss_pred EEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-HHHHHHhhcCCcccEEEe
Q 007525 431 CDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKAHKITQVVM 505 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-l~~l~~~~~~~~fD~VVm 505 (600)
+|+| +|.-.|..+-. +..-.|.|++..++.+++.|+..|+++..+.+++....+. +.......+...||.+.+
T Consensus 107 iDIg--tgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIG--TGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eecc--CchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 5665 45555555542 4689999999999999999999999998888887755332 222221112446999999
Q ss_pred CCCcch
Q 007525 506 NLPNDA 511 (600)
Q Consensus 506 NpP~~a 511 (600)
|||.+.
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 999874
|
|
| >COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.87 E-value=1 Score=47.33 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=34.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAV 461 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Av 461 (600)
....|.+++|+|+|+|..+-.+-+.|..|+|+|+--.++
T Consensus 24 ~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysy 62 (330)
T COG3392 24 EDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSY 62 (330)
T ss_pred cccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHH
Confidence 356788999999999999999999999999999965554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=80.22 E-value=18 Score=38.93 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~~~~~~~ 499 (600)
..++.+|+=+||| +|.+++.+|+. | .+|+++|.+++-++.+++-. +.+ .+..... +....+..+. .+..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~-~~~~~~~~~~~~~~~~~t---~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GAD-VVVNPSEDDAGAEILELT---GGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCe-EeecCccccHHHHHHHHh---CCCC
Confidence 3445589999998 67777778875 5 59999999999999988621 111 0111111 3333332221 1336
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+|+++=--- +...+..+..+++++ +.|++-.+....
T Consensus 239 ~D~vie~~G--~~~~~~~ai~~~r~g--------G~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVIEAVG--SPPALDQALEALRPG--------GTVVVVGVYGGE 274 (350)
T ss_pred CCEEEECCC--CHHHHHHHHHHhcCC--------CEEEEEeccCCc
Confidence 897775332 455778889988886 578887776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 600 | ||||
| 2zzn_A | 336 | The Complex Structure Of Atrm5 And Trnacys Length = | 8e-19 | ||
| 2zzm_A | 336 | The Complex Structure Of Atrm5 And Trnaleu Length = | 2e-18 | ||
| 2yx1_A | 336 | Crystal Structure Of M.Jannaschii Trna M1g37 Methyl | 1e-17 | ||
| 3a25_A | 301 | Crystal Structure Of P. Horikoshii Tyw2 In Complex | 4e-09 | ||
| 3k6r_A | 278 | Crystal Structure Of Putative Transferase Ph0793 Fr | 1e-07 | ||
| 3a27_A | 272 | Crystal Structure Of M. Jannaschii Tyw2 In Complex | 9e-07 |
| >pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys Length = 336 | Back alignment and structure |
|
| >pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu Length = 336 | Back alignment and structure |
|
| >pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37 Methyltransferase Length = 336 | Back alignment and structure |
|
| >pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With Adomet Length = 301 | Back alignment and structure |
|
| >pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From Pyrococcus Horikoshii Length = 278 | Back alignment and structure |
|
| >pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With Adomet Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-68
Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 41/353 (11%)
Query: 249 GEKWRGSTRLLLLDEELVDKNVEEFPE------AIKVLLEQDTRENTTPTLELVKCRLTL 302
GE+ R +L++ L++K+ + E IK + E + ELV L
Sbjct: 12 GEQTRR----ILIENNLLNKDYKITSEGNYLYLPIKDVDEDILKSILNIEFELVDKELEE 67
Query: 303 --FYDYWLMNEILEALLPKGM---IIPSAFETVGHIAHLNLREE-HQPFKYLIAKVVLDK 356
EI+ K + +I +++ VG + L + +E + + I ++
Sbjct: 68 KKIIKKPSFREIISKKYRKEIDEGLISLSYDVVGDLVILQISDEVDEKIRKEIGELAYKL 127
Query: 357 NKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATE 416
K V + + ++R +LE LAG N +T+ + L+ +Y++ +L E
Sbjct: 128 IPCK--GVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGE 185
Query: 417 RQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK 476
R R++ + DVV D+FAGVGP I K++YA D+NP+A++ L++N LNKLE K
Sbjct: 186 RARIMKKVSLNDVVVDMFAGVGPFSIACKN-AKKIYAIDINPHAIELLKKNIKLNKLEHK 244
Query: 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKI 536
I D R +V+MNLP A +F+D I + I
Sbjct: 245 IIPILSDVREVDVKG---------NRVIMNLPKFAHKFIDKALDIVEEG--------GVI 287
Query: 537 HLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPE 589
H Y K D E + EV +E R V+ AP +++L F + +
Sbjct: 288 HYYTIGKDFDKAIKLFE--KKCDCEV---LEKRIVKSYAPREYILALDFKINK 335
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 5e-67
Identities = 62/294 (21%), Positives = 110/294 (37%), Gaps = 29/294 (9%)
Query: 300 LTLFYDYWLMNEILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKP 359
+ + + + LE L + + ++ +G + + + ++ +
Sbjct: 1 MGSSHHHHHHSSGLEVLFQGPLHMGIKYQKIGDVVIVKKELSEDEIREIVK-------RT 53
Query: 360 KIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQR 419
K + ++ I ++RT +++L G + + L I W+ ER+R
Sbjct: 54 KCKAILLYTTQITGEFRTPHVKILYGKETETIHKEYGCLFKLD-VAKIMWSQGNIEERKR 112
Query: 420 LLSGFNFKDVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKI 477
+ N +VV D+FAG+G IP AK K VYA + NP A YL N LNKL I
Sbjct: 113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI 172
Query: 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIH 537
D R A +V+M + +FLD +DR IH
Sbjct: 173 P-ILADNRDVELKDVA-------DRVIMGYVHKTHKFLDKTFEFLKDR--------GVIH 216
Query: 538 LYGFSKARDPEFDFHERIRIALVEVAVNVE---MRRVRLVAPGKWMLCASFVLP 588
+ + ER++ + + +R+++ APG W +
Sbjct: 217 YHETVAEKIMYERPIERLKFYAEKNGYKLIDYEVRKIKKYAPGVWHVVVDAKFE 270
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-63
Identities = 69/288 (23%), Positives = 127/288 (44%), Gaps = 25/288 (8%)
Query: 309 MNEILEALLPKGMI--IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVN 366
+ EIL LP+ ++ +P + +G + L LR E +P+K+ IA+V + ++TV+
Sbjct: 10 IREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAE--VLGVKTVLR 67
Query: 367 KIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNF 426
K IH + R E+L G++++ + + + I ++ ER R+
Sbjct: 68 KGH-IHGETRKPDYELLYGSDTVTVHVE-NGIKYKLDVAKIMFSPANVKERVRMAKVAKP 125
Query: 427 KDVVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 485
++V D+FAG+G + +P A +V A + +PY +L N LNK+E ++ +NMD R
Sbjct: 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 185
Query: 486 RFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545
F A +++M EF+ I +D IH + +
Sbjct: 186 DFPGENIA-------DRILMGYVVRTHEFIPKALSIAKDG--------AIIHYHNTVPEK 230
Query: 546 DPEFDFHERIRIALVEVAVNVE---MRRVRLVAPGKWMLCASFVLPES 590
+ E + E +VE +++ APG W + + +S
Sbjct: 231 LMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFKS 278
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 1e-14
Identities = 98/566 (17%), Positives = 178/566 (31%), Gaps = 157/566 (27%)
Query: 85 DQQENETKAFIDETHFTRI-FDIAALRVPAKDCYALESRL----RGHLLNWPRV---RNI 136
+QE + F++E F ++ ++ + ++ +R+ R L N +V N+
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 137 ARV-LGDEIETQFVKLLGNNNDGSHG--GNEDFSG--VVGDEVNSVLFREELVKSFDARG 191
+R+ ++ ++L N G G SG V V ++ D +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLG----SGKTWV---ALDVCLSYKVQCKMDFKI 184
Query: 192 F-VKFRN-------LARISRLRRKKRKEKKEGKEGNGRKGELYVVEVVEEERKEMSGLLG 243
F + +N L + +L + + + + + + E+ LL
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-----IKLRIHSIQAELRRLL- 238
Query: 244 DEFRGGEKWRGSTRLLLLDEELV-DKNV-EEFPEAIKVLLEQDTR---------ENTTPT 292
+ LL+L V + F + K+LL TR TT
Sbjct: 239 ------KSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTH 288
Query: 293 LELVKCRLTLFYDY-------WLMNEILEALLPKGM--IIPSAFETVGHIAHLNLREEHQ 343
+ L +TL D +L + LP+ + P + IA +R+
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRR---LSIIAES-IRDGLA 342
Query: 344 PFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRC 403
+ V DK I++ +N ++ +YR M F LS+F
Sbjct: 343 TWDNW-KHVNCDKLTTIIESSLNVLEP--AEYRKM----------------FDRLSVFP- 382
Query: 404 FDT--------IYWNSKLATERQRLLSGF-NFKDVVCDVFAGVGPICIPA---------- 444
+ W + ++ +++ + V I IP+
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLE 440
Query: 445 ------AKIVKRVYA-------NDLNPYAVD-----YLERNSVLNKLEKKIEVFNMDGRR 486
IV Y +DL P +D ++ + L +E E +
Sbjct: 441 NEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIE-HPERMTLFRMV 496
Query: 487 FIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRD--RPEDAKF--------TF-PK 535
F+D F QK + N L + Y+ D K+ F PK
Sbjct: 497 FLDFRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPK 554
Query: 536 I--HLYGFSKARDPEFDFHERIRIAL 559
I +L D +RIAL
Sbjct: 555 IEENLI-----CSKYTDL---LRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 59/412 (14%), Positives = 120/412 (29%), Gaps = 136/412 (33%)
Query: 256 TRLLLLDEELVDKNVEEFPEAIKVLLEQD-----------TRENTTPTLELVKCRLTLFY 304
+ L L L+ K E + ++ +L + R+ + T ++ R L+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 305 D--------------YWLMNEILEALLPK------GMI----------------IPSAFE 328
D Y + + L L P G++ + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 329 TVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNS 388
I LNL+ + P + VL+ +Q ++ +ID + +S
Sbjct: 182 --FKIFWLNLKNCNSP------ETVLE----MLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 389 LVTML--LFHHLSLFRCF---DTIYWNSK-----------LATERQR----LLSGFNFKD 428
+ L L C + N+K L T R + LS
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 429 VVCD-------------VFA---GVGPICIPAAKIVKRVYANDLNPYAV----------- 461
+ D + P +P NP +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-------VLTTNPRRLSIIAESIRDGL 341
Query: 462 ---DYLERNSVLNKLEKKIEVF--NMDG----RRFID-AMFASQKAHKITQVVMNL---- 507
D ++ +KL IE ++ + F ++F + I ++++L
Sbjct: 342 ATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFD 398
Query: 508 --PNDATEFLDAF--RGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERI 555
+D ++ + +P+++ + P I+L + E+ H I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEYALHRSI 449
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 7e-12
Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 22/191 (11%)
Query: 405 DTIYWNSKLATERQR-------LLSGFNFKDVVCDVFAGVGPICIPAAK---IVKRVYAN 454
+++N ++ R L V D + G I V++ YAN
Sbjct: 24 MPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYAN 83
Query: 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEF 514
D++ A++ ++ N LN + + + + + V ++ F
Sbjct: 84 DISSKAIEIMKENFKLNNIPEDRYEIHGM---EANFFLRKEWGFGFDYVDLDPFGTPVPF 140
Query: 515 LD-AFRGIYRDRPEDAKFT--------FPKIHLYGFSKARDPEFDFHERIRIALVEVAVN 565
++ + R T +PK + + HE L++ +
Sbjct: 141 IESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHEVGIRILIKKVIE 200
Query: 566 VEMRRVRLVAP 576
+ + + P
Sbjct: 201 LAAQYDIAMIP 211
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 7e-10
Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 412 KLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471
K+A +S DVV D F GVG I A RV A D++P + N+ +
Sbjct: 64 KIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY 123
Query: 472 KLEKKIEVFNMDGRRFI-----DAMFAS-------QKAHKITQVVMNLPNDATEFLDAFR 519
+ KIE D D +F S + + + D E +
Sbjct: 124 GIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSK 183
Query: 520 GI 521
I
Sbjct: 184 KI 185
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-09
Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 36/201 (17%)
Query: 405 DTIYWNSKLATERQR--LLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYA 460
+++N ++A R +L +V D + G I A + V+ ND++ A
Sbjct: 24 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA 83
Query: 461 VDYLERNSVLN--------------KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506
+ ++RN +LN K EK I + + D R + +++ + ++
Sbjct: 84 YELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM-----AERHRYFHFIDLD 138
Query: 507 LPNDATEFLD-AFRGIYRDRPEDAKFT--------FPK--IHLYGFSKARDPEFDFHERI 555
EFLD A R R T P+ + Y R HE
Sbjct: 139 PFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGE--LCHEVG 196
Query: 556 RIALVEVAVNVEMRRVRLVAP 576
LV V + +
Sbjct: 197 TRILVGVIARYAAKYDLGIDV 217
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487
DV DV G G + + A V+RVYA D NP A+ E N + L + + D
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94
Query: 488 I------DAMFASQKAHKITQVV 504
+ D ++ +++
Sbjct: 95 LCKIPDIDIAVVGGSGGELQEIL 117
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486
K + +++ G G + A+ RV A ++ +V + N N ++ +++ M
Sbjct: 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEE 272
Query: 487 FIDAMFASQKAHKITQVVMNLPNDATEFLD 516
F AM ++ +++ + + T F+D
Sbjct: 273 FTQAMNGVREFNRLQGIDLKSYQCETIFVD 302
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE 474
+ + D+++GVG I AK V D N +A++ RN +N ++
Sbjct: 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD 338
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGR 485
D + D+ G G I I A VK D+N A+ + N LN L+ I V + D
Sbjct: 53 DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL- 111
Query: 486 RFIDAMFASQKAHKITQVVMNLP 508
+ + K K +++ N P
Sbjct: 112 ------YENVKDRKYNKIITNPP 128
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE 474
+D V D+F G+G +P A V + P V+ ++N+ LN L+
Sbjct: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 9/107 (8%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERN-SVLNKLEKKIEVFNMDGRR 486
V D+ G+G I + + N N +L K + + D +
Sbjct: 95 TKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKE 154
Query: 487 FI--------DAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525
++ D ++ + D L
Sbjct: 155 YLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPF 201
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487
+++ D+ G G + + R + ++ +++N L ++
Sbjct: 57 ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116
Query: 488 I------DAMF 492
+ +A+F
Sbjct: 117 LADLPLPEAVF 127
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 420 LLSGF---NFKDVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNK-- 472
LL+ + + D+ AG G + A ++ V + + ++ R+ L
Sbjct: 27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA 86
Query: 473 -LEKKIEVFNMDGRRFIDA-MFASQKAHKITQVVMNLP 508
+IEV D A + A V+MN P
Sbjct: 87 AFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPP 124
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 9e-04
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 428 DVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 485
+ + D+ + + A K A ++ ++ + L ++I+V +G
Sbjct: 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGL 82
Query: 486 RFID 489
I+
Sbjct: 83 AVIE 86
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 100.0 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 100.0 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 100.0 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 100.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.93 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.92 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.91 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.91 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.89 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.88 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.82 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.76 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.74 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.73 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.69 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.52 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.51 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.44 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.44 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.42 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.4 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.39 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.39 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.36 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.35 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.34 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.33 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.32 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.32 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.31 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.31 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.31 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.3 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.28 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.28 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.28 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.28 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.26 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.26 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.26 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.26 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.26 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.25 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.24 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.24 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.24 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.23 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.23 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.23 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.22 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.22 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.21 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.21 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.19 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.19 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.18 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.18 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.17 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.17 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.17 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.16 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.16 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.15 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.15 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.15 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.15 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.14 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.14 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.13 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.13 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.13 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.13 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.13 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.12 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.1 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.09 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.08 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.08 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.08 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.08 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.08 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.08 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.07 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.07 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.05 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.05 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.05 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.05 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.04 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.04 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.04 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.04 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.03 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.03 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.03 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.02 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.02 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.02 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.02 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.01 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.01 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.01 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.0 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.0 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.99 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.98 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.98 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.98 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.98 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.98 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.97 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.97 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.97 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.96 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.96 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.96 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.96 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.96 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.94 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.94 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.94 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.94 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.94 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.94 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.93 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.93 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.93 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.93 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.93 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.92 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.92 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.91 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.91 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.9 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.9 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.89 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.89 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.89 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.89 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.88 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.88 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.88 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.88 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.88 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.88 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.88 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.87 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.86 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.85 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.85 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.85 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.85 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.84 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.84 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.84 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.84 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.84 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.83 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.83 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.83 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.83 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.83 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.82 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.82 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.82 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.81 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.81 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.8 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.8 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.8 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.79 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.79 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.79 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.79 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.78 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.77 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.77 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.77 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.77 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.76 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.76 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.75 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.75 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.74 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.74 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.73 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.73 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.73 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.72 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.72 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.71 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.71 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.69 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.68 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.68 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.68 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.67 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.66 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.63 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.63 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.63 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.62 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.61 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.61 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.6 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.59 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.58 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.58 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.58 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.58 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.58 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.57 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.56 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.55 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.54 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.53 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.52 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.51 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.5 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.46 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.45 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.45 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.43 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.42 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.42 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.42 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.42 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.42 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.4 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.38 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.37 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.35 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.32 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.3 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.3 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.29 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.22 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.21 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.21 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.21 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.21 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.2 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.19 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.17 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.16 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.16 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.15 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.15 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.13 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.11 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.1 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.08 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.05 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.03 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.01 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.0 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.85 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.81 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.77 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.72 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.64 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.63 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.62 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.62 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.6 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.6 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.57 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.55 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.54 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.49 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.46 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.46 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.34 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.33 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.33 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.28 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.27 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 97.2 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.13 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 97.06 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.91 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.9 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 96.75 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.48 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 96.38 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.27 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 96.24 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.04 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 95.41 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 94.81 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.89 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 92.5 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 90.42 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.2 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 89.68 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 88.92 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 88.75 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 88.75 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 88.75 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.21 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.06 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.81 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 87.63 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 87.58 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.33 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 87.31 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 87.26 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 87.07 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.67 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 86.59 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 86.33 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 86.25 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 86.02 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.18 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 85.16 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.03 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.01 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 84.91 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 84.81 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 84.81 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 84.75 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 83.89 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 83.59 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.11 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 83.01 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 82.92 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 82.76 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 82.64 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 82.37 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 81.67 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 81.39 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 80.88 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 80.65 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 80.43 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 80.43 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 80.34 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 80.21 |
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=436.61 Aligned_cols=264 Identities=26% Similarity=0.400 Sum_probs=227.2
Q ss_pred ChHHHHHhcCCCCC--CCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEec
Q 007525 308 LMNEILEALLPKGM--IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAG 385 (600)
Q Consensus 308 ~~~eiL~~~LP~~~--~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaG 385 (600)
...|+|++.||+++ ++|++||++|||+|++++++..+|++.|+++++++. ++++|+++ +.+.|++|.+++++|+|
T Consensus 9 ~~~e~l~~~lp~~l~~~~P~~~e~~Gdi~il~~~~~~~~~~~~i~~~l~~~~--~vk~V~~k-~~i~g~~R~~~~e~L~G 85 (278)
T 3k6r_A 9 RIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVL--GVKTVLRK-GHIHGETRKPDYELLYG 85 (278)
T ss_dssp HHHHHHTTTSCGGGGGGSCSCCEEETTEEEECC-CTTGGGHHHHHHHHHHHH--TCSEEEEC-C----------CEEEEC
T ss_pred HHHHHHhhhCChhHHhhCCCCceEECCEEEEeCChhHhHHHHHHHHHHHhcc--CCeEEEEe-CCcCCccccccceEEec
Confidence 46899999999986 599999999999999999999999999999999974 79999988 56889999999999999
Q ss_pred CCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHH
Q 007525 386 NNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYL 464 (600)
Q Consensus 386 e~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l 464 (600)
++. ++.++||||+|.+|++++||++++.+||.|+.+.+++|++|||+|||+|+||+++|++| ++|+|+|+||+|+++|
T Consensus 86 ~~~-~~~~~E~G~~~~~D~~k~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~ 164 (278)
T 3k6r_A 86 SDT-VTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL 164 (278)
T ss_dssp SCC-EEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CCc-EEEEEECCEEEEEeccceEEcCCcHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHH
Confidence 974 68899999999999999999999999999999999999999999999999999999987 5999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 465 ERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 465 ~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
++|+++||++++++++++|+++++. ...||+|+||||..+.+||+.+.++++++ |+||+|+|+++
T Consensus 165 ~~N~~~N~v~~~v~~~~~D~~~~~~-------~~~~D~Vi~~~p~~~~~~l~~a~~~lk~g--------G~ih~~~~~~e 229 (278)
T 3k6r_A 165 VENIHLNKVEDRMSAYNMDNRDFPG-------ENIADRILMGYVVRTHEFIPKALSIAKDG--------AIIHYHNTVPE 229 (278)
T ss_dssp HHHHHHTTCTTTEEEECSCTTTCCC-------CSCEEEEEECCCSSGGGGHHHHHHHEEEE--------EEEEEEEEEEG
T ss_pred HHHHHHcCCCCcEEEEeCcHHHhcc-------ccCCCEEEECCCCcHHHHHHHHHHHcCCC--------CEEEEEeeecc
Confidence 9999999999999999999999863 46799999999999999999999999976 79999999987
Q ss_pred CCCchhHHHHHHHHHhh---cccceEEEEeEEecCCCcEEEEEEEeccc
Q 007525 545 RDPEFDFHERIRIALVE---VAVNVEMRRVRLVAPGKWMLCASFVLPES 590 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~---~~~~~~v~~VR~VAP~K~mycvsFrlp~~ 590 (600)
.+...+..+.+.+.+.+ ....++++.||+|||++||+|+||+++++
T Consensus 230 ~~~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~~~hvv~D~~i~ks 278 (278)
T 3k6r_A 230 KLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFKS 278 (278)
T ss_dssp GGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEEEECC
T ss_pred cccchhHHHHHHHHHHHcCCcEEEEEEEEEEeECcCccEEEEEEEEeCC
Confidence 65544445555544333 33456889999999999999999999763
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=353.88 Aligned_cols=273 Identities=29% Similarity=0.407 Sum_probs=233.2
Q ss_pred CeeEEEeeeee-cccc-cChHHHHHhcCCCC---CCCCeeEEEECcEEEEEeCCCCccc-HHHHHHHHHhhcCCCceEEE
Q 007525 292 TLELVKCRLTL-FYDY-WLMNEILEALLPKG---MIIPSAFETVGHIAHLNLREEHQPF-KYLIAKVVLDKNKPKIQTVV 365 (600)
Q Consensus 292 ~~e~v~~~l~l-~Y~~-~~~~eiL~~~LP~~---~~iPssfd~iG~Ia~lnL~~e~~py-k~lI~evLldk~~P~IktVv 365 (600)
+++++++++++ .|++ |++.|+|+++||++ .++|++||+|||++|+|+.++.+++ ++.|+++|++.+ |. ++|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~d~~g~~~vv~~~~~~~~~~~~~i~~~l~~~~-~~-~~v~ 134 (336)
T 2yx1_A 57 EFELVDKELEEKKIIKKPSFREIISKKYRKEIDEGLISLSYDVVGDLVILQISDEVDEKIRKEIGELAYKLI-PC-KGVF 134 (336)
T ss_dssp CCEEEECCCCCC-----CCSHHHHHHHTHHHHTTSSBCSCCEEETTEEEECBCSCSCHHHHHHHHHHHHHHS-CC-SEEE
T ss_pred ceeEEEeecccccccccCCHHHHHhhhCCchhccccCCceEEEECCEEEEecCcchhhhHHHHHHHHHHHHC-CC-cEEE
Confidence 67889999998 8875 59999999999975 4699999999999999999988888 999999999998 66 9999
Q ss_pred EcccccccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHh
Q 007525 366 NKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAA 445 (600)
Q Consensus 366 ~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaA 445 (600)
.+.+.+.|.+|+.++++++|+....+.++|+|++|.+|+.++||+++.++|+.++.+.+.+|++|||+|||+|+|+++ |
T Consensus 135 ~~~~~~~g~~r~~~~~~l~G~~~~~~~~~e~g~~f~~d~~~~~~~~~~~~er~~i~~~~~~~~~VLDlg~G~G~~~l~-a 213 (336)
T 2yx1_A 135 RRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-C 213 (336)
T ss_dssp EEC-------CCCCEEEEEECCCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHH-T
T ss_pred EcCCCCCCcccccceEEEeCCCCcEEEEEECCEEEEEehHHhccCCccHHHHHHHHHhcCCCCEEEEccCccCHHHHh-c
Confidence 987667889999999999999877888999999999999999999999999998888888999999999999999999 9
Q ss_pred hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 446 KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 446 kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+.+++|+|+|+|+.+++++++|++.|++.++++++++|+.+++ ..||+|+||||+.+.++++.+.++++++
T Consensus 214 ~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------~~fD~Vi~dpP~~~~~~l~~~~~~L~~g 284 (336)
T 2yx1_A 214 KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------VKGNRVIMNLPKFAHKFIDKALDIVEEG 284 (336)
T ss_dssp TTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------CCEEEEEECCTTTGGGGHHHHHHHEEEE
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------CCCcEEEECCcHhHHHHHHHHHHHcCCC
Confidence 8667999999999999999999999999767999999999875 4699999999999999999999999876
Q ss_pred CCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCCCcEEEEEEEecc
Q 007525 526 PEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPE 589 (600)
Q Consensus 526 ~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~mycvsFrlp~ 589 (600)
|++|+++++.. ...+.+.+.+.. .....+++.|++++|+++|||++|+++.
T Consensus 285 --------G~l~~~~~~~~---~~~~~~~l~~~~--~~~i~~~~~v~~~~p~~~~~~~~~~l~~ 335 (336)
T 2yx1_A 285 --------GVIHYYTIGKD---FDKAIKLFEKKC--DCEVLEKRIVKSYAPREYILALDFKINK 335 (336)
T ss_dssp --------EEEEEEEEESS---SHHHHHHHHHHS--EEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------CEEEEEEeecC---chHHHHHHHHhc--CCcEEEEEEEeccCCCCCEEEEEEEEec
Confidence 69999999887 234444444322 1234578999999999999999999974
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=318.76 Aligned_cols=263 Identities=26% Similarity=0.403 Sum_probs=209.2
Q ss_pred ChHHHHHhcCCCCCC--CCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEec
Q 007525 308 LMNEILEALLPKGMI--IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAG 385 (600)
Q Consensus 308 ~~~eiL~~~LP~~~~--iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaG 385 (600)
++.|+|+++||+++. +|.+||+|||++|+|+.....++++.|+++|.+.+ ++++|+++ +.+.+++|..+.++|+|
T Consensus 9 ~~~~~~~~~~~~~~~d~lp~~~d~~g~~~vv~~~~~~~~~~~~i~~~l~~~~--~~~~i~~~-~~~~~~~~~~~~~~l~G 85 (278)
T 2frn_A 9 RIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVL--GVKTVLRK-GHIHGETRKPDYELLYG 85 (278)
T ss_dssp ----------CCCTTTCSCSCCEEETTEEECC--CCSCSCCTHHHHHHHHHH--TCSEEEEC-C----------CEEEEC
T ss_pred CHHHHHHhhCChhHhhhcCceEEEECCEEEEeCChhHHHHHHHHHHHHHHhc--CCCEEEEe-CCccCCccccceEEEEC
Confidence 567999999999864 99999999999999996666899999999999986 68999999 45678889999999999
Q ss_pred CCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHH
Q 007525 386 NNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYL 464 (600)
Q Consensus 386 e~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l 464 (600)
++ ..+.++|+|++|.+|+..+||++++..++.++.+.+++|++|||+|||+|+|++.+|+.|. +|+|+|+||.+++.+
T Consensus 86 ~~-~~~~~~e~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a 164 (278)
T 2frn_A 86 SD-TVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL 164 (278)
T ss_dssp SC-CEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CC-CEEEEEECCEEEEEEccceeEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 95 5677889999999999999999999999999988888999999999999999999999876 699999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 465 ERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 465 ~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
++|++.|++.++++++++|+.++.. ...||+|++|||....++++.+.++++++ |+++++++++.
T Consensus 165 ~~n~~~n~~~~~v~~~~~D~~~~~~-------~~~fD~Vi~~~p~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~ 229 (278)
T 2frn_A 165 VENIHLNKVEDRMSAYNMDNRDFPG-------ENIADRILMGYVVRTHEFIPKALSIAKDG--------AIIHYHNTVPE 229 (278)
T ss_dssp HHHHHHTTCTTTEEEECSCTTTCCC-------CSCEEEEEECCCSSGGGGHHHHHHHEEEE--------EEEEEEEEEEG
T ss_pred HHHHHHcCCCceEEEEECCHHHhcc-------cCCccEEEECCchhHHHHHHHHHHHCCCC--------eEEEEEEeecc
Confidence 9999999999889999999998753 46799999999998889999999999986 79999999864
Q ss_pred CCCchhHHHHHHHHHhhcc---cceEEEEeEEecCCCcEEEEEEEecc
Q 007525 545 RDPEFDFHERIRIALVEVA---VNVEMRRVRLVAPGKWMLCASFVLPE 589 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~~~---~~~~v~~VR~VAP~K~mycvsFrlp~ 589 (600)
.....+..+.+...+.... ..++.+.|++++|+.+|+++++++.+
T Consensus 230 ~~~~~~~~~~i~~~~~~~G~~~~~~~~~~v~~~~p~~~h~~~d~~v~r 277 (278)
T 2frn_A 230 KLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFK 277 (278)
T ss_dssp GGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEEEEC
T ss_pred ccccccHHHHHHHHHHHcCCeeEEeeeEEEEecCCCceEEEEEEEEec
Confidence 3222234455555554433 33456779999999999999999853
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=317.30 Aligned_cols=253 Identities=24% Similarity=0.311 Sum_probs=183.7
Q ss_pred HHhcCCCCCCCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEE
Q 007525 313 LEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTM 392 (600)
Q Consensus 313 L~~~LP~~~~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~ 392 (600)
|+-++|.++++|++||+|||++|+|+.++.. .| ++|+++ |++++|+++.+.+.+.+|+.++++|+|++ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~d~~g~~~v~~~~~~~~----~i-~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~G~~-~~~~ 85 (272)
T 3a27_A 14 LEVLFQGPLHMGIKYQKIGDVVIVKKELSED----EI-REIVKR--TKCKAILLYTTQITGEFRTPHVKILYGKE-TETI 85 (272)
T ss_dssp -------------CCEEETTEEEC------------------------CCSEEEEC----------CCEEEECSC-CEEE
T ss_pred eEEEccCCCCCCCcceEECCEEEEeCCchHH----HH-HHHHhC--CCceEEEEcCCCCCCcccccceEEEeCCC-cEEE
Confidence 4557899999999999999999999988763 78 888876 68999999987677888999999999998 5666
Q ss_pred EEeccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNakl 470 (600)
++|+|++|.+|+..|||+++.++|+.+++..+.++++|||+|||+|.|++++|+++ ++|+|+|+||.+++.+++|++.
T Consensus 86 ~~e~g~~f~~~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~ 165 (272)
T 3a27_A 86 HKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL 165 (272)
T ss_dssp EEETTEEEEEETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred EEECCEEEEEechhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 88999999999999999999999998888888899999999999999999999974 4999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchh
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFD 550 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~d 550 (600)
|++.+ ++++++|+.++ .. ...||+|++|||....+++..+.+.++++ ++++++|+...++..+.
T Consensus 166 n~l~~-~~~~~~d~~~~-~~------~~~~D~Vi~d~p~~~~~~l~~~~~~Lkpg--------G~l~~s~~~~~~~~~~~ 229 (272)
T 3a27_A 166 NKLNN-VIPILADNRDV-EL------KDVADRVIMGYVHKTHKFLDKTFEFLKDR--------GVIHYHETVAEKIMYER 229 (272)
T ss_dssp TTCSS-EEEEESCGGGC-CC------TTCEEEEEECCCSSGGGGHHHHHHHEEEE--------EEEEEEEEEEGGGTTTH
T ss_pred cCCCC-EEEEECChHHc-Cc------cCCceEEEECCcccHHHHHHHHHHHcCCC--------CEEEEEEcCcccccccc
Confidence 99986 89999999987 32 35799999999998888999999999986 69999999875543222
Q ss_pred HHH---HHHHHHhhcccceEEEEeEEecCCCcEEEEEEEecc
Q 007525 551 FHE---RIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLPE 589 (600)
Q Consensus 551 i~e---RI~~~L~~~~~~~~v~~VR~VAP~K~mycvsFrlp~ 589 (600)
..+ .+.+.++...+..+++.||.++|+++|||++|++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~d~~~~~ 271 (272)
T 3a27_A 230 PIERLKFYAEKNGYKLIDYEVRKIKKYAPGVWHVVVDAKFER 271 (272)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCeeEEeEEEEEEEECCCCCEEEEEEEEec
Confidence 322 222222223345678999999999999999999864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=230.75 Aligned_cols=217 Identities=15% Similarity=0.136 Sum_probs=172.4
Q ss_pred eeEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccccc--ccccccceeEEEecCCceEEEEEeccEEEE
Q 007525 325 SAFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAI--HNDYRTMQLEVLAGNNSLVTMLLFHHLSLF 401 (600)
Q Consensus 325 ssfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I--~ge~R~~~~evLaGe~~~~t~vkEnG~~F~ 401 (600)
--+|+||+++++|+.+.. ..+++.|.++|.+.+ .+++|+.|.+.. ..+......++++|+.+..++++|+|++|.
T Consensus 109 l~vD~y~~~~vvq~~~~~~~~~~~~i~~al~~~~--~~~~i~~k~~~~~r~~~g~~~~~~~l~G~~~~~~~v~E~g~~f~ 186 (393)
T 4dmg_A 109 LVVDRFGEVLVLQVRSRGMEALREVWLPALLEVV--APKGVYERSDVEARRQEGLPERVGVVYGEVPEVLEVEEDGLRFP 186 (393)
T ss_dssp EEEEEETTEEEEEECSHHHHHTHHHHHHHHHHHH--CCSEEEECCCHHHHHHTTCCCCCEEEEECCCSEEEEEETTEEEE
T ss_pred EEEEEECCEEEEEECcHHHHHHHHHHHHHHHHHc--CCCEEEEEcCcchHhhcCCCcccceEecCCCCcEEEEECCEEEE
Confidence 379999999999998875 678999999999987 478999987532 122234467899999877888999999999
Q ss_pred EecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCc
Q 007525 402 RCFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK 476 (600)
Q Consensus 402 vD~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nr 476 (600)
+|+.. +|++++.. +..+....++|++|||+|||+|.|++.+|+.|+.|+|+|+|+.+++.+++|++.|++.+
T Consensus 187 vd~~~~~~tG~f~dqr~~--r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~- 263 (393)
T 4dmg_A 187 IPLALAQKTGYYLDQREN--RRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRV- 263 (393)
T ss_dssp EETTTCCTTSSCGGGHHH--HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCC-
T ss_pred EechhccccCcCCCHHHH--HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCC-
Confidence 99986 99998865 34455556669999999999999999999998889999999999999999999999985
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.+.++|+.+++..+ .+.||.|++|||..+ .+++..+.++++++ |+++++..+.
T Consensus 264 -~~~~~D~~~~l~~~-----~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG--------G~Lv~~s~s~ 329 (393)
T 4dmg_A 264 -DIRHGEALPTLRGL-----EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEE--------GFLWLSSCSY 329 (393)
T ss_dssp -EEEESCHHHHHHTC-----CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE--------EEEEEEECCT
T ss_pred -cEEEccHHHHHHHh-----cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--------CEEEEEECCC
Confidence 45699999987542 234999999999843 36788888888886 6787666555
Q ss_pred CCCCchhHHHHHHHHHhh
Q 007525 544 ARDPEFDFHERIRIALVE 561 (600)
Q Consensus 544 ~~d~~~di~eRI~~~L~~ 561 (600)
..+. ..+.+.+...+..
T Consensus 330 ~~~~-~~f~~~v~~a~~~ 346 (393)
T 4dmg_A 330 HLRL-EDLLEVARRAAAD 346 (393)
T ss_dssp TSCH-HHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHH
Confidence 4332 2445555554443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=223.42 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=167.6
Q ss_pred eeEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCC-ceEEEEEeccEEEEE
Q 007525 325 SAFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNN-SLVTMLLFHHLSLFR 402 (600)
Q Consensus 325 ssfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~-~~~t~vkEnG~~F~v 402 (600)
-.+|++|+++++++.... .++++.|+++|.+.. |++++|+.+.+...+ ....++++|+. .....+.|+|++|.+
T Consensus 110 l~vd~~g~~~vv~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~~~~~~~~---~~~~~~l~G~~~~~~~~v~e~g~~f~v 185 (385)
T 2b78_A 110 VTIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVY-PNFLGAYEKIRFKGI---DNVSAHLYGQEAPEQFLILENGISYNV 185 (385)
T ss_dssp EEEEEETTEEEEEECSHHHHHTHHHHHHHHHHHS-TTCSEEEEEECC-------CCEEEEEESCCCSSEEEEETTEEEEE
T ss_pred eEEEEECCEEEEEECcHHHHHhHHHHHHHHHHHh-CCCCEEEEechhhcC---CccceeecCCCCCceEEEEECCEEEEE
Confidence 378999999999997654 578899999999987 778999988655444 56788999994 444567899999999
Q ss_pred ecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCC-
Q 007525 403 CFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEK- 475 (600)
Q Consensus 403 D~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~n- 475 (600)
|+. .||++++.. +..+.+.+.+|++|||+|||+|.|++.+|+.|+ +|+|+|+|+.|++.+++|++.|++++
T Consensus 186 ~~~~~~~t~ff~~~~~~--~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~ 263 (385)
T 2b78_A 186 FLNDGLMTGIFLDQRQV--RNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMA 263 (385)
T ss_dssp CSSSSSCCSSCGGGHHH--HHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCT
T ss_pred eccccccCCcCCcHHHH--HHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 999 889877643 233334337889999999999999999999775 99999999999999999999999985
Q ss_pred cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 476 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 476 rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+++++++|+.+++..+.. ...+||+|++|||+.+ .+++..+.++++++ |++.+.|..
T Consensus 264 ~v~~~~~D~~~~l~~~~~--~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg--------G~l~~~~~~ 333 (385)
T 2b78_A 264 NHQLVVMDVFDYFKYARR--HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN--------GLIIASTNA 333 (385)
T ss_dssp TEEEEESCHHHHHHHHHH--TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE--------EEEEEEECC
T ss_pred ceEEEECCHHHHHHHHHH--hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC--------cEEEEEeCC
Confidence 699999999998865432 1458999999999953 13456667888875 688887766
Q ss_pred CCCCCchhHHHHHHHHH
Q 007525 543 KARDPEFDFHERIRIAL 559 (600)
Q Consensus 543 k~~d~~~di~eRI~~~L 559 (600)
.... ...+.+.+...+
T Consensus 334 ~~~~-~~~~~~~i~~~~ 349 (385)
T 2b78_A 334 ANMT-VSQFKKQIEKGF 349 (385)
T ss_dssp TTSC-HHHHHHHHHHHH
T ss_pred CcCC-HHHHHHHHHHHH
Confidence 5432 223444444444
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=217.49 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=170.6
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccccccc--ccccceeEEEecCCc-eEEEEEeccEEEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHN--DYRTMQLEVLAGNNS-LVTMLLFHHLSLF 401 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~g--e~R~~~~evLaGe~~-~~t~vkEnG~~F~ 401 (600)
-+|++|+++++++.... .++++.|+++|.+.. .+++|+.+.+.... +......++|+|+.+ ....++|+|++|.
T Consensus 116 ~vd~~g~~~v~~~~~~~~~~~~~~i~~~l~~~~--~~~~i~~~~~~~~~~~~g~~~~~~~l~G~~~~~~~~~~~~g~~f~ 193 (396)
T 3c0k_A 116 TIDRFGNFLVLQLLSAGAEYQRAALISALQTLY--PECSIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLL 193 (396)
T ss_dssp EEEEETTEEEEEECSHHHHHTHHHHHHHHHHHC--TTSEEEEEECCTHHHHTTCCCEEEEEESCCCCSSEEEEETTEEEE
T ss_pred EEEEECCEEEEEECCHHHHHHHHHHHHHHHHhc--CCCEEEEeCCchhHhhcCCCccceeEcCCCCCceEEEEECCEEEE
Confidence 67899999999998654 578899999999886 67899988432211 222457789999965 4566789999999
Q ss_pred EecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCC-C
Q 007525 402 RCFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKL-E 474 (600)
Q Consensus 402 vD~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl-~ 474 (600)
+|+. .|||+++.. +..+.+ +.++++|||+|||+|.|++.+|+.| .+|+|+|+|+.+++.+++|++.|++ .
T Consensus 194 v~~~~~~~tgff~~~~~~--~~~l~~-~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~ 270 (396)
T 3c0k_A 194 VDIQHGHKTGYYLDQRDS--RLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL 270 (396)
T ss_dssp ECTTTSSTTSSCGGGHHH--HHHHHH-HCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred EeccccccCCcCcCHHHH--HHHHHH-hhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 9998 899988754 233333 3688999999999999999999986 5999999999999999999999999 7
Q ss_pred CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 475 nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
++++++++|+.+++..+... ..+||.|++|||+.+ .+++..+.++++++ +++++.|.
T Consensus 271 ~~v~~~~~D~~~~~~~~~~~--~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~ 340 (396)
T 3c0k_A 271 SKAEFVRDDVFKLLRTYRDR--GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG--------GILLTFSC 340 (396)
T ss_dssp GGEEEEESCHHHHHHHHHHT--TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE--------EEEEEEEC
T ss_pred cceEEEECCHHHHHHHHHhc--CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC--------cEEEEEeC
Confidence 46999999999987654321 467999999999842 36788888888875 68888887
Q ss_pred cCCCCCchhHHHHHHHHHhh
Q 007525 542 SKARDPEFDFHERIRIALVE 561 (600)
Q Consensus 542 ~k~~d~~~di~eRI~~~L~~ 561 (600)
...... ..+.+.+.+.+..
T Consensus 341 ~~~~~~-~~~~~~i~~~~~~ 359 (396)
T 3c0k_A 341 SGLMTS-DLFQKIIADAAID 359 (396)
T ss_dssp CTTCCH-HHHHHHHHHHHHH
T ss_pred CCcCCH-HHHHHHHHHHHHH
Confidence 654432 2344445444443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-23 Score=216.25 Aligned_cols=220 Identities=21% Similarity=0.198 Sum_probs=169.4
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccccccc--ccccceeEEEecCCceEEEEEeccEEEEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHN--DYRTMQLEVLAGNNSLVTMLLFHHLSLFR 402 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~g--e~R~~~~evLaGe~~~~t~vkEnG~~F~v 402 (600)
-+|++|+++++++.... .++++.|+++|.+.+ +.+++|+.+.+.... +......++++|+......+.|+|++|.+
T Consensus 113 ~vd~~g~~~v~~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~e~g~~~~~ 191 (396)
T 2as0_A 113 IVDRFNDIASLQISSAGMERFKLDVAEAIMEVE-PGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIV 191 (396)
T ss_dssp EEEEETTEEEEEECCHHHHTTHHHHHHHHHHHC-TTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEECcHHHHHHHHHHHHHHHHhC-CCCCEEEEeCCcchHhhcCCCcccceecCCCCceEEEEeCCEEEEE
Confidence 67899999999998654 578899999999986 678999988332111 12345788999998667778899999999
Q ss_pred ecC----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 403 CFD----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 403 D~~----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
|+. .||++++.. +..+....+++++|||+|||+|.|++.+|+.|+ +|+|+|+++.+++.+++|++.|++.+++
T Consensus 192 ~~~~~~tg~f~~~~~~--~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v 269 (396)
T 2as0_A 192 DMRGQKTGFFLDQREN--RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM 269 (396)
T ss_dssp ESSSSSSCCCSTTHHH--HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred eccccccCccCCHHHH--HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 995 489887744 333444444899999999999999999999865 9999999999999999999999998569
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+++++|+.+++..+.. ...+||.|++|||+.+ .+++..+.++++++ |++.+.+....
T Consensus 270 ~~~~~d~~~~~~~~~~--~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~ 339 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQK--KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG--------GILVTCSCSQH 339 (396)
T ss_dssp EEEESCHHHHHHHHHH--TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE--------EEEEEEECCTT
T ss_pred eEEECCHHHHHHHHHh--hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--------cEEEEEECCCC
Confidence 9999999998765432 2468999999999842 35677778888775 57777776654
Q ss_pred CCCchhHHHHHHHHH
Q 007525 545 RDPEFDFHERIRIAL 559 (600)
Q Consensus 545 ~d~~~di~eRI~~~L 559 (600)
... ..+.+.+.+.+
T Consensus 340 ~~~-~~~~~~v~~~~ 353 (396)
T 2as0_A 340 VDL-QMFKDMIIAAG 353 (396)
T ss_dssp SCH-HHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHH
Confidence 332 23444444333
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=208.86 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=175.4
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccccc--cccceeEEEecCCceEEEEEeccEEEEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHND--YRTMQLEVLAGNNSLVTMLLFHHLSLFR 402 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~ge--~R~~~~evLaGe~~~~t~vkEnG~~F~v 402 (600)
.+|++|+++++++.... .++++.|+++|.+.. ++|+.+.+..... ......++++|+.+....++|+|++|.+
T Consensus 109 ~vd~~g~~~vv~~~~~~~~~~~~~i~~~l~~~~----~~i~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~i 184 (382)
T 1wxx_A 109 VVDYYAGHAVVQATAHAWEGLLPQVAEALRPHV----QSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYLV 184 (382)
T ss_dssp EEEEETTEEEEEECSHHHHTTHHHHHHHHGGGC----SEEEEEECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEECcHHHHHHHHHHHHHHHHHh----hEEEEcCCchhhhhcCCCcccceecCCCCceEEEEECCEEEEE
Confidence 68899999999997654 567888998887653 7898874332111 2245678899997667788999999999
Q ss_pred ecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 403 CFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 403 D~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
++. .+|++++.. .+++..+ ++++|||+|||+|.|++.+|+.+.+|+|+|+|+.+++.+++|++.|++.+ +
T Consensus 185 ~~~~~~~~g~f~~~~~~---~~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~ 259 (382)
T 1wxx_A 185 DLRAGQKTGAYLDQREN---RLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-V 259 (382)
T ss_dssp ECSTTSCCCCCGGGHHH---HHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-E
T ss_pred EchhcccCccccchHHH---HHHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-c
Confidence 998 688887643 3334445 88999999999999999999987799999999999999999999999987 9
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+++++|+.+++..+.. ...+||.|++|||+.+ .+++..+.++++++ |++++.+.+..
T Consensus 260 ~~~~~d~~~~~~~~~~--~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~ 329 (382)
T 1wxx_A 260 RVLEANAFDLLRRLEK--EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG--------GILATASCSHH 329 (382)
T ss_dssp EEEESCHHHHHHHHHH--TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE--------EEEEEEECCTT
T ss_pred eEEECCHHHHHHHHHh--cCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC--------CEEEEEECCCC
Confidence 9999999998765432 2468999999999843 35778888888876 68888887654
Q ss_pred CCCchhHHHHHHHHHhhcccceEEEEeEEecCCCcE
Q 007525 545 RDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWM 580 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~m 580 (600)
.+. ..+.+.+.+.+.... ..++.+....+..+|
T Consensus 330 ~~~-~~~~~~i~~~~~~~g--~~~~~i~~~~~~~d~ 362 (382)
T 1wxx_A 330 MTE-PLFYAMVAEAAQDAH--RLLRVVEKRGQPFDH 362 (382)
T ss_dssp SCH-HHHHHHHHHHHHHTT--CCEEEEEEECCCTTS
T ss_pred CCH-HHHHHHHHHHHHHcC--CeEEEEEcCCCCCCC
Confidence 432 234444544444332 234555555555554
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-21 Score=198.59 Aligned_cols=215 Identities=15% Similarity=0.093 Sum_probs=153.0
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCC-c-eEEEEEeccEEEEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNN-S-LVTMLLFHHLSLFR 402 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~-~-~~t~vkEnG~~F~v 402 (600)
.+|+||+++++|..+.. ..++.. +.++ . .+++|+.|.+..+| ..++++|+. + ..+.++|+|++|.+
T Consensus 55 ~~d~~g~~~vvq~~~~~~~~~~~~--~~~~--~--~~~~i~~r~~~~eg-----~~~~~~g~~~~~~~~~i~e~g~~f~v 123 (332)
T 2igt_A 55 KLEQYGDYRVVRPEAQALWRPLVP--DRVW--Q--NADAIFTGDTDEDG-----MGRWRFPKEALGETWPLSLLGVEFLG 123 (332)
T ss_dssp EEEEETTEEEEEECTTCCSCCCSC--HHHH--H--TCSEEEEECC---C-----CEEEECSSSCCCSEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEECcHHHhhhhhh--hhhh--c--CCcEEEEeCcccCC-----CcceEecCCCCCCceEEEECCEEEEE
Confidence 78999999999998764 333311 2222 2 45899998644443 237888853 3 67889999999999
Q ss_pred ecCeeeec---ChhHHHHHHHHhcC---CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCC-
Q 007525 403 CFDTIYWN---SKLATERQRLLSGF---NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK- 475 (600)
Q Consensus 403 D~~kfy~n---~Rl~tEr~Riv~~l---~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~n- 475 (600)
++..+++. +.....+.++.+.+ .++.+|||+|||+|.|++.+|+.|++|+++|+|+.+++.+++|++.|++.+
T Consensus 124 ~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~ 203 (332)
T 2igt_A 124 RFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQA 203 (332)
T ss_dssp ECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTS
T ss_pred ecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 99876653 22222234455443 467899999999999999999998899999999999999999999999986
Q ss_pred cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch--------------HHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 476 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA--------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 476 rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a--------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
+++++++|+.+++..+... ..+||.||+|||+.+ .+++..+.++|+++ |++.+.+.
T Consensus 204 ~v~~i~~D~~~~l~~~~~~--~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg--------G~lli~~~ 273 (332)
T 2igt_A 204 PIRWICEDAMKFIQREERR--GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK--------ALGLVLTA 273 (332)
T ss_dssp CEEEECSCHHHHHHHHHHH--TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT--------CCEEEEEE
T ss_pred ceEEEECcHHHHHHHHHhc--CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcC--------cEEEEEEC
Confidence 5999999999987643221 468999999999632 36788888888886 35444444
Q ss_pred cCCCCCchhHHHHHHHHHhh
Q 007525 542 SKARDPEFDFHERIRIALVE 561 (600)
Q Consensus 542 ~k~~d~~~di~eRI~~~L~~ 561 (600)
.........+.+-+.+.+..
T Consensus 274 ~~~~~~~~~~~~~l~~a~~~ 293 (332)
T 2igt_A 274 YSIRASFYSMHELMRETMRG 293 (332)
T ss_dssp CCTTSCHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 33322222444444444433
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=203.20 Aligned_cols=198 Identities=12% Similarity=0.145 Sum_probs=148.0
Q ss_pred eeEEEECcEEEEEeCCCC--------cccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEe
Q 007525 325 SAFETVGHIAHLNLREEH--------QPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLF 395 (600)
Q Consensus 325 ssfd~iG~Ia~lnL~~e~--------~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkE 395 (600)
-.+|+||+++++|+.... ..+...|.++|.+.....+++|+.|.... .|. ...+. .|+....+.++|
T Consensus 431 l~vD~y~d~lvvq~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~k~r~~~~g~---~~~~~-~g~~~~~~~v~E 506 (703)
T 3v97_A 431 VAVDRYADWVVVQEYAPPKTIDAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGK---NQYQK-LGEKGEFLEVTE 506 (703)
T ss_dssp EEEEEETTEEEEEECC-------CHHHHHHHHHHHHHHHHHTCCGGGEEEECCC----------------CCSCCEEEEE
T ss_pred EEEEEECCEEEEEeCCCccccchHHHHHHHHHHHHHHHHHhCCCcceeEEeccccccCc---chhhc-cCCCCceEEEEE
Confidence 689999999999997632 24556678888776522467888876531 221 12222 366666788999
Q ss_pred ccEEEEEecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 396 nG~~F~vD~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNak 469 (600)
+|++|.+|+.. +|++++.. .+++..+.+|.+|||+|||+|.|++.+|+.|+ +|+++|+|+.+++.+++|++
T Consensus 507 ~g~~~~v~~~~~~~tG~f~d~r~~---r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~ 583 (703)
T 3v97_A 507 YNAHLWVNLTDYLDTGLFLDHRIA---RRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR 583 (703)
T ss_dssp TTEEEEECSSSSSSCSCCGGGHHH---HHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCcccHHHH---HHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 99999999884 78886643 33333355799999999999999999999876 79999999999999999999
Q ss_pred HcCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCCCCCCCCCc
Q 007525 470 LNKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDRPEDAKFTF 533 (600)
Q Consensus 470 lNgl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~~~~g~~~~ 533 (600)
+|+++ ++++++++|+.++++. ...+||+|++|||.++ .+++..+.++++++
T Consensus 584 ~ngl~~~~v~~i~~D~~~~l~~-----~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg-------- 650 (703)
T 3v97_A 584 LNGLTGRAHRLIQADCLAWLRE-----ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG-------- 650 (703)
T ss_dssp HTTCCSTTEEEEESCHHHHHHH-----CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEE--------
T ss_pred HcCCCccceEEEecCHHHHHHh-----cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCC--------
Confidence 99997 5699999999998764 2468999999999743 24577888888886
Q ss_pred cEEEEEecc
Q 007525 534 PKIHLYGFS 542 (600)
Q Consensus 534 p~IHvY~F~ 542 (600)
|++.+-|-.
T Consensus 651 G~L~~s~~~ 659 (703)
T 3v97_A 651 GTIMFSNNK 659 (703)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEECC
Confidence 566655544
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=174.09 Aligned_cols=181 Identities=12% Similarity=0.144 Sum_probs=131.4
Q ss_pred CcEEEEEeCCCC-cccHHHHHHHHHhhcCCC--c-eEEEEcccccccccccceeEEEecCCceEEEEEecc--EEEEEec
Q 007525 331 GHIAHLNLREEH-QPFKYLIAKVVLDKNKPK--I-QTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHH--LSLFRCF 404 (600)
Q Consensus 331 G~Ia~lnL~~e~-~pyk~lI~evLldk~~P~--I-ktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG--~~F~vD~ 404 (600)
|+++++.+.... ...+..+++.+.+.. +. + ..++.+ ....++++|++.....+..+| +.|.+++
T Consensus 119 g~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~---------~~~~~~~~G~~~i~e~~~~~g~~~~~~~~~ 188 (369)
T 3bt7_A 119 NQAVVSLLYHKKLDDEWRQEAEALRDAL-RAQNLNVHLIGR---------ATKTKIELDQDYIDERLPVAGKEMIYRQVE 188 (369)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHH-HTTTCEEEEEEE---------ETTEEEESSCSEEEEECCBTTBCCEEEEET
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHhC-cCCeeEEEEEeC---------CCceEEEcCCCEEEEEeccCCceEEEEECC
Confidence 677776654433 334567777777654 32 2 122322 123567899876544443478 7888999
Q ss_pred CeeeecChhHHHH--HHHHhcCC-CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 405 DTIYWNSKLATER--QRLLSGFN-FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 405 ~kfy~n~Rl~tEr--~Riv~~l~-~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
..|||.|..++|+ ..+++.+. .++.|||+|||+|.|++++|+.+.+|+|+|+|+.|++.+++|++.|++++ +++++
T Consensus 189 ~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~-v~~~~ 267 (369)
T 3bt7_A 189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIR 267 (369)
T ss_dssp TSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCS-EEEEC
T ss_pred CCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 9999999998887 35555443 36889999999999999999988899999999999999999999999975 99999
Q ss_pred cChHHHHHHHHHhh----------cCCcccEEEeCCCcchHHHHHHHHHHhcC
Q 007525 482 MDGRRFIDAMFASQ----------KAHKITQVVMNLPNDATEFLDAFRGIYRD 524 (600)
Q Consensus 482 gDare~l~~l~~~~----------~~~~fD~VVmNpP~~a~eFLdaa~~lLk~ 524 (600)
+|+.+++..+.... ....||.|++|||+.. ....+.+.+++
T Consensus 268 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--~~~~~~~~l~~ 318 (369)
T 3bt7_A 268 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG--LDSETEKMVQA 318 (369)
T ss_dssp CCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--CCHHHHHHHTT
T ss_pred CCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc--cHHHHHHHHhC
Confidence 99999876532100 0027999999999963 22445555654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-18 Score=180.23 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=115.5
Q ss_pred EEEEeccEEEEEec--------CeeeecChhHHHHHHHH---hcC----CCCCeEEEEeeechHHHHHHhhC--C-CEEE
Q 007525 391 TMLLFHHLSLFRCF--------DTIYWNSKLATERQRLL---SGF----NFKDVVCDVFAGVGPICIPAAKI--V-KRVY 452 (600)
Q Consensus 391 t~vkEnG~~F~vD~--------~kfy~n~Rl~tEr~Riv---~~l----~~ge~VLDlfAGvG~FaIpaAkk--g-~~V~ 452 (600)
++++|||++|.+|. ..+||++....+|..+. +.+ .+|++|||+|||+|.|++.+|++ | .+|+
T Consensus 2 ~~i~E~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~ 81 (392)
T 3axs_A 2 EIVQEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAY 81 (392)
T ss_dssp EEEEETTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEE
T ss_pred eEEEECCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEE
Confidence 46889999999965 46888877777775432 222 35899999999999999999984 5 5899
Q ss_pred EEeCcHHHHHHHHHHHHHcCCCCc-EEEEEcChHHHHH-HHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCC
Q 007525 453 ANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFID-AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAK 530 (600)
Q Consensus 453 AvDiNP~Ave~l~eNaklNgl~nr-V~~i~gDare~l~-~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~ 530 (600)
|||+|+.+++.+++|+++|+++++ ++++++|+.+++. .. ...||+|++||+....+|++.+.++++++
T Consensus 82 avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-----~~~fD~V~lDP~g~~~~~l~~a~~~Lk~g----- 151 (392)
T 3axs_A 82 ANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-----GFGFDYVDLDPFGTPVPFIESVALSMKRG----- 151 (392)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-----SSCEEEEEECCSSCCHHHHHHHHHHEEEE-----
T ss_pred EEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-----CCCCcEEEECCCcCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999887 9999999999875 42 35799999999776678999999999876
Q ss_pred CCccEEEEEe
Q 007525 531 FTFPKIHLYG 540 (600)
Q Consensus 531 ~~~p~IHvY~ 540 (600)
++|++.|
T Consensus 152 ---Gll~~t~ 158 (392)
T 3axs_A 152 ---GILSLTA 158 (392)
T ss_dssp ---EEEEEEE
T ss_pred ---CEEEEEe
Confidence 6888877
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=175.68 Aligned_cols=161 Identities=13% Similarity=0.176 Sum_probs=129.8
Q ss_pred hcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCCCCCeEEE
Q 007525 356 KNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFNFKDVVCD 432 (600)
Q Consensus 356 k~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~ge~VLD 432 (600)
.. |++++|+.+.+.. .+...+ ..++|+|++.....+ +|++|.+++..|||.|+.++|+ ..+.+ +.++++|||
T Consensus 222 ~~-~~~~~i~~~~~~~~~~~~~g-~~~~l~G~~~i~e~~--~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~~~~~VLD 296 (425)
T 2jjq_A 222 NY-FDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERL--DDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LVEGEKILD 296 (425)
T ss_dssp TT-CCCSEEEEEECCSSSCCSCC-EEEEEEECSCEEEEE--TTEEEEECTTSCCCSBHHHHHHHHHHHHH-HCCSSEEEE
T ss_pred hc-CCeeEEEEEcCCCCCceecc-eEEEEECCCeEEEEE--CCEEEEEccccccccCHHHHHHHHHHhhc-cCCCCEEEE
Confidence 45 7889998875433 233345 788999998654434 9999999999999999988887 34445 678899999
Q ss_pred EeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-
Q 007525 433 VFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA- 511 (600)
Q Consensus 433 lfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a- 511 (600)
+|||+|.|++++|+.+.+|+|+|+++.|++.+++|++.|++. ++++++|+.+++. ..||.|++|||+..
T Consensus 297 lgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~--------~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 297 MYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV--------KGFDTVIVDPPRAGL 366 (425)
T ss_dssp ETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC--------TTCSEEEECCCTTCS
T ss_pred eeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc--------cCCCEEEEcCCccch
Confidence 999999999999999899999999999999999999999996 9999999988642 27999999999753
Q ss_pred -HHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 512 -TEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 512 -~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
..+++.+. .++++ +++.+-|
T Consensus 367 ~~~~~~~l~-~l~p~--------givyvsc 387 (425)
T 2jjq_A 367 HPRLVKRLN-REKPG--------VIVYVSC 387 (425)
T ss_dssp CHHHHHHHH-HHCCS--------EEEEEES
T ss_pred HHHHHHHHH-hcCCC--------cEEEEEC
Confidence 34666655 46664 4677666
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=168.53 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=115.7
Q ss_pred EEEEeccEEEEEecC------eeeecChhHHHHHH---HHhcCCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHH
Q 007525 391 TMLLFHHLSLFRCFD------TIYWNSKLATERQR---LLSGFNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPY 459 (600)
Q Consensus 391 t~vkEnG~~F~vD~~------kfy~n~Rl~tEr~R---iv~~l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~ 459 (600)
+.++|+|++|.++.. .+||++....+|.. +++.+ ++.+|||+|||+|.+++.+|++ + .+|+|+|+|+.
T Consensus 4 ~~~~Eg~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~-~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~ 82 (378)
T 2dul_A 4 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISED 82 (378)
T ss_dssp EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred eEEEeCcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHH
Confidence 568999999999763 68999998888865 33434 7899999999999999999986 4 58999999999
Q ss_pred HHHHHHHHHHHc---------------CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcC
Q 007525 460 AVDYLERNSVLN---------------KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRD 524 (600)
Q Consensus 460 Ave~l~eNaklN---------------gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~ 524 (600)
+++.+++|++.| ++++ ++++++|+.+++... ...||+|++|||....+|++.+.+++++
T Consensus 83 av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~~~~-----~~~fD~I~lDP~~~~~~~l~~a~~~lk~ 156 (378)
T 2dul_A 83 AYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLMAER-----HRYFHFIDLDPFGSPMEFLDTALRSAKR 156 (378)
T ss_dssp HHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHHHHS-----TTCEEEEEECCSSCCHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHHHhc-----cCCCCEEEeCCCCCHHHHHHHHHHhcCC
Confidence 999999999999 8876 999999999987532 3579999999998888999999999987
Q ss_pred CCCCCCCCccEEEEEe
Q 007525 525 RPEDAKFTFPKIHLYG 540 (600)
Q Consensus 525 ~~~~g~~~~p~IHvY~ 540 (600)
+ |+|++.|
T Consensus 157 g--------G~l~vt~ 164 (378)
T 2dul_A 157 R--------GILGVTA 164 (378)
T ss_dssp E--------EEEEEEE
T ss_pred C--------CEEEEEe
Confidence 6 5788776
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=156.05 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=108.9
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYAN 454 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~Av 454 (600)
.+.++.|...... .+|++|.+++..|||.++.++|. ..+++. ..++++|||+|||+|.|++++|+.+.+|+|+
T Consensus 238 ~~~~l~g~~~~~~---~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gv 314 (433)
T 1uwv_A 238 ILETVSGEMPWYD---SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 314 (433)
T ss_dssp CCEEEECCCCEEE---ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred eEEEEeCCCcEEE---ECCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEE
Confidence 3567888876543 48999999999999999888877 445544 4578899999999999999999998899999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHH
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFR 519 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~ 519 (600)
|+++.+++.+++|++.|++.+ ++++++|+.+.+..+.- ....||.|++|||+.. .+++..+.
T Consensus 315 D~s~~al~~A~~n~~~~~~~~-v~f~~~d~~~~l~~~~~--~~~~fD~Vv~dPPr~g~~~~~~~l~ 377 (433)
T 1uwv_A 315 EGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPW--AKNGFDKVLLDPARAGAAGVMQQII 377 (433)
T ss_dssp ESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGG--GTTCCSEEEECCCTTCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCCc-eEEEECCHHHHhhhhhh--hcCCCCEEEECCCCccHHHHHHHHH
Confidence 999999999999999999985 99999999885432100 1357999999999963 34554444
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=128.04 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=86.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.+++|++.+++. +++++++|+.++.... ...+||.|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~fD~i 117 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS-GATLRRGAVAAVVAAG----TTSPVDLV 117 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCS-CEEEEESCHHHHHHHC----CSSCCSEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEccHHHHHhhc----cCCCccEE
Confidence 5789999999999999998888765 8999999999999999999999995 5999999999986532 24689999
Q ss_pred EeCCCcch-----HHHHHHHHH--HhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPNDA-----TEFLDAFRG--IYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~~a-----~eFLdaa~~--lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++|||... .+++..+.+ +++++ |++.+-+...
T Consensus 118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pg--------G~l~~~~~~~ 156 (189)
T 3p9n_A 118 LADPPYNVDSADVDAILAALGTNGWTREG--------TVAVVERATT 156 (189)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHSSSCCTT--------CEEEEEEETT
T ss_pred EECCCCCcchhhHHHHHHHHHhcCccCCC--------eEEEEEecCC
Confidence 99999864 245666666 67665 4665544443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=132.74 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=112.2
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH
Q 007525 411 SKLATERQRLLSGFNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI 488 (600)
Q Consensus 411 ~Rl~tEr~Riv~~l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l 488 (600)
++..+|...+...+.++.+|||+||| +|.+++.+|+. +.+|+|+|+|+.+++.+++|++.|++ +++++++|+..+.
T Consensus 40 p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 117 (230)
T 3evz_A 40 TTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIK 117 (230)
T ss_dssp CCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSST
T ss_pred CCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhh
Confidence 55555543344457889999999999 99999999998 78999999999999999999999999 4999999975432
Q ss_pred HHHHHhhcCCcccEEEeCCCcch-----------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 489 DAMFASQKAHKITQVVMNLPNDA-----------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 489 ~~l~~~~~~~~fD~VVmNpP~~a-----------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
. . ..++||.|++|||+.. ..++..+.++|+++ |++.+++-...
T Consensus 118 ~--~---~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~- 183 (230)
T 3evz_A 118 G--V---VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG--------GKVALYLPDKE- 183 (230)
T ss_dssp T--T---CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE--------EEEEEEEESCH-
T ss_pred h--c---ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC--------eEEEEEecccH-
Confidence 1 1 2468999999999742 56788888888876 56666543221
Q ss_pred CCchhHHHHHHHHHhhcccceEEEEeEEecCCCcEEEEEEEec
Q 007525 546 DPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCASFVLP 588 (600)
Q Consensus 546 d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~mycvsFrlp 588 (600)
.-.+.+.+.+... +..+..++-..-.+.-.++.|...
T Consensus 184 ----~~~~~~~~~l~~~--g~~~~~~~~~~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 184 ----KLLNVIKERGIKL--GYSVKDIKFKVGTRWRHSLIFFKG 220 (230)
T ss_dssp ----HHHHHHHHHHHHT--TCEEEEEEECCCC-CEEEEEEECC
T ss_pred ----hHHHHHHHHHHHc--CCceEEEEecCCCeEEEEEEEecc
Confidence 1223333344332 345666666666677777777654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-14 Score=141.38 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=91.1
Q ss_pred ceeEEEecCCceEEEEEeccEEEEEecCeeeecChhH-HHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEE
Q 007525 378 MQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLA-TERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYAN 454 (600)
Q Consensus 378 ~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~-tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~Av 454 (600)
..+.++.|++.+...+.+.+..|.+|+..-.+..|.. .++..+.+. ..++++|||+|||+|.+++.+|+.|++|+|+
T Consensus 32 ~~~~l~~~~~~l~l~~~~~~~~~~~dF~~~~~~~R~~~~~~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~v 111 (258)
T 2r6z_A 32 QGSYLLAEHDTVSLRLVGEKSNVIVDFTSGAAQYRRTKGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAF 111 (258)
T ss_dssp SSEEEEEETTEEEEEETTCSCCBCCCCC-------------CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCEEEEEEcCCCCeEEEEeCCcHHHHhhhccchHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEE
Confidence 3455777776655555444345555544333322221 122233333 3467899999999999999999999999999
Q ss_pred eCcH-------HHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 455 DLNP-------YAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 455 DiNP-------~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|+|| ++++.+++|++.|++.++++++++|+.+++..+... ...||+|++|||+.
T Consensus 112 D~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~--~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 112 EQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT--QGKPDIVYLDPMYP 172 (258)
T ss_dssp ECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH--HCCCSEEEECCCC-
T ss_pred ECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc--CCCccEEEECCCCC
Confidence 9999 999999999999999878999999999987643210 15799999999864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=119.40 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=89.7
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+...+.+|++|||+|||+|.+++.+|+.+++|+|+|+++.+++.+++|++.+++. +++++++|+..+... ..+
T Consensus 15 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~~~~~l~~~-----~~~ 88 (185)
T 3mti_A 15 FLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE-NTELILDGHENLDHY-----VRE 88 (185)
T ss_dssp HHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCC-CEEEEESCGGGGGGT-----CCS
T ss_pred HHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCcHHHHHhh-----ccC
Confidence 33445788999999999999999999999889999999999999999999999995 599999887764311 246
Q ss_pred cccEEEeCCCc-------------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 499 KITQVVMNLPN-------------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 499 ~fD~VVmNpP~-------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+||.|++|++. ....++..+.++|+++ |++.+.+|....
T Consensus 89 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~~ 140 (185)
T 3mti_A 89 PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG--------GRLAIMIYYGHD 140 (185)
T ss_dssp CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE--------EEEEEEEC----
T ss_pred CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC--------cEEEEEEeCCCC
Confidence 79999999543 2236778899999986 688888886543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=135.70 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=98.3
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcC--CCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGF--NFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNakl 470 (600)
.|..|.+++..+. +|-.+|. ..+++.+ .++.+|||+|||+|.+++.+|+. +++|+|+|+|+.+++.+++|++.
T Consensus 91 ~~~~~~v~~~~li--pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 91 MGLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp TTEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCcee--cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 7888988887654 6666665 3444443 36789999999999999999998 78999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcc---cEEEeCCCcch-----------------------HHHHHHHH-HHhc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKI---TQVVMNLPNDA-----------------------TEFLDAFR-GIYR 523 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~f---D~VVmNpP~~a-----------------------~eFLdaa~-~lLk 523 (600)
+++.++++++++|+.+.+. ++| |.|++|||+.. ..++..+. +.++
T Consensus 169 ~~l~~~v~~~~~D~~~~~~--------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~ 240 (284)
T 1nv8_A 169 HGVSDRFFVRKGEFLEPFK--------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT 240 (284)
T ss_dssp TTCTTSEEEEESSTTGGGG--------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred cCCCCceEEEECcchhhcc--------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC
Confidence 9998889999999988542 357 99999999853 16777887 8777
Q ss_pred CC
Q 007525 524 DR 525 (600)
Q Consensus 524 ~~ 525 (600)
++
T Consensus 241 pg 242 (284)
T 1nv8_A 241 SG 242 (284)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=130.18 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=103.9
Q ss_pred eccEEEEEecCeeeecChhHHHHH--HHH-hcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc
Q 007525 395 FHHLSLFRCFDTIYWNSKLATERQ--RLL-SGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~Rl~tEr~--Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN 471 (600)
.+++.+.+|+..+|......+.+. +.+ ..+.++.+|||+|||+|.+++.+++.|.+|+|+|++|.+++.+++|++.|
T Consensus 86 ~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~ 165 (254)
T 2nxc_A 86 GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN 165 (254)
T ss_dssp SSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT
T ss_pred CCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc
Confidence 367788999999888877666552 222 33678999999999999999999999889999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++. ++++++|+.+.+. ..+||.|++|++... ..++..+.++++++ |++.+.++..
T Consensus 166 ~~~--v~~~~~d~~~~~~-------~~~fD~Vv~n~~~~~~~~~l~~~~~~Lkpg--------G~lils~~~~ 221 (254)
T 2nxc_A 166 GVR--PRFLEGSLEAALP-------FGPFDLLVANLYAELHAALAPRYREALVPG--------GRALLTGILK 221 (254)
T ss_dssp TCC--CEEEESCHHHHGG-------GCCEEEEEEECCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEG
T ss_pred CCc--EEEEECChhhcCc-------CCCCCEEEECCcHHHHHHHHHHHHHHcCCC--------CEEEEEeecc
Confidence 986 8999999987531 357999999987653 47888999999886 5777666544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-13 Score=122.62 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=85.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.+++|+..+++.++++++++|+.+.+..+.. ....||.|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~fD~i 120 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE--EKLQFDLV 120 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH--TTCCEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh--cCCCCCEE
Confidence 478899999999999999998886 599999999999999999999999976799999999987654321 14689999
Q ss_pred EeCCCcc---hHHHHHHH--HHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPND---ATEFLDAF--RGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~~---a~eFLdaa--~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++|||+. ...++..+ .++|+++ |++.+.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~L~~g--------G~l~~~~~~~ 157 (187)
T 2fhp_A 121 LLDPPYAKQEIVSQLEKMLERQLLTNE--------AVIVCETDKT 157 (187)
T ss_dssp EECCCGGGCCHHHHHHHHHHTTCEEEE--------EEEEEEEETT
T ss_pred EECCCCCchhHHHHHHHHHHhcccCCC--------CEEEEEeCCc
Confidence 9999953 23455555 4455654 5665554443
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=119.00 Aligned_cols=133 Identities=23% Similarity=0.260 Sum_probs=104.7
Q ss_pred ccEEEEEecC-eeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 396 HHLSLFRCFD-TIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 396 nG~~F~vD~~-kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
.|..+.++.. .+|..+........+++. ..++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++|+..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 98 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNN 98 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 5667777544 355444332233445554 4578899999999999999999998899999999999999999999999
Q ss_pred CCC-cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-----HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 473 LEK-KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-----TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 473 l~n-rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-----~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+.+ +++++++|+.+.+. ...||.|++|+|... ..++..+.++++++ |++.+.++..
T Consensus 99 ~~~~~~~~~~~d~~~~~~-------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~~ 160 (194)
T 1dus_A 99 LDNYDIRVVHSDLYENVK-------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN--------GEIWVVIQTK 160 (194)
T ss_dssp CTTSCEEEEECSTTTTCT-------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE--------EEEEEEEEST
T ss_pred CCccceEEEECchhcccc-------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCC--------CEEEEEECCC
Confidence 975 59999999987542 457999999998642 47888889999876 6788887765
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=118.13 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+++.+..|+|+|+++.+++.+++|+..+++ +++++++|+.+++..... ..++||.|+
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~--~~~~~D~i~ 115 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKA--QGERFTVAF 115 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHH--TTCCEEEEE
T ss_pred cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhc--cCCceEEEE
Confidence 3789999999999999999999988899999999999999999999998 499999999987654321 134799999
Q ss_pred eCCCcc--hHHHHHHHH--HHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPND--ATEFLDAFR--GIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~~--a~eFLdaa~--~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+|+|.. ..+++..+. ++++++ |++.+.+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~L~~g--------G~~~~~~~~~~ 151 (171)
T 1ws6_A 116 MAPPYAMDLAALFGELLASGLVEAG--------GLYVLQHPKDL 151 (171)
T ss_dssp ECCCTTSCTTHHHHHHHHHTCEEEE--------EEEEEEEETTS
T ss_pred ECCCCchhHHHHHHHHHhhcccCCC--------cEEEEEeCCcc
Confidence 999873 335666666 667665 57766665543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-13 Score=131.77 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=84.4
Q ss_pred CC-CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FN-FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~-~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+. ++.+|||+|||+|.+++.+|+++. +|+|+|+++.+++.+++|++.|++.++++++++|+.++...+ ..++||
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~----~~~~fD 121 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI----PKERAD 121 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS----CTTCEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh----ccCCcc
Confidence 45 789999999999999999999865 999999999999999999999999988999999999875321 246899
Q ss_pred EEEeCCCcchH------------------------HHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDAT------------------------EFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~------------------------eFLdaa~~lLk~~ 525 (600)
+|++|||+... .++..+.++|+++
T Consensus 122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp EEEECCCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 99999997432 5888999999986
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=119.57 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=86.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.+++|++.+++.++++++++|+.+++.. ....||.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~fD~ 103 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-----LTGRFDL 103 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-----BCSCEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh-----hcCCCCE
Confidence 4578899999999999999999986 599999999999999999999999976799999999987643 2356999
Q ss_pred EEeCCCcch---HHHHHHHH--HHhcCCCCCCCCCccEEEEEeccCC
Q 007525 503 VVMNLPNDA---TEFLDAFR--GIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVmNpP~~a---~eFLdaa~--~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|++|||... .+++..+. ++|+++ |++.+.+....
T Consensus 104 i~~~~~~~~~~~~~~~~~l~~~~~L~~g--------G~l~~~~~~~~ 142 (177)
T 2esr_A 104 VFLDPPYAKETIVATIEALAAKNLLSEQ--------VMVVCETDKTV 142 (177)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTTCEEEE--------EEEEEEEETTC
T ss_pred EEECCCCCcchHHHHHHHHHhCCCcCCC--------cEEEEEECCcc
Confidence 999999732 24455554 555554 57776665554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-12 Score=118.31 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=93.2
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
..++++++|||+|||+|.+++.+++. +++|+|+|+++.+++.+++|++.+++.++++++++|+.++... ..+
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~ 92 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-----IDC 92 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-----CCS
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-----ccC
Confidence 34788999999999999999999986 2599999999999999999999999966799999999876421 246
Q ss_pred cccEEEeCCCc-------------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 499 KITQVVMNLPN-------------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 499 ~fD~VVmNpP~-------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+||.|++|+|. ...+++..+.++++++ |++.+.+|....
T Consensus 93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g--------G~l~~~~~~~~~ 144 (197)
T 3eey_A 93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG--------GIITVVIYYGGD 144 (197)
T ss_dssp CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE--------EEEEEEECCBTT
T ss_pred CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC--------CEEEEEEccCCC
Confidence 89999999976 2247899999999986 688887776543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=123.63 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
++.+|||+|||+|.+++.+++++ .+|+|+|+|+.+++.+++|++.|++. +++++++|+.+++.. ....||.|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~D~~~~~~~-----~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQ-----KGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSS-----CCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHhh-----cCCCCCEEE
Confidence 68899999999999999988877 49999999999999999999999995 599999999987632 245799999
Q ss_pred eCCCcc---hHHHHHHHHH--HhcCCCCCCCCCccEEEEEeccC
Q 007525 505 MNLPND---ATEFLDAFRG--IYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 505 mNpP~~---a~eFLdaa~~--lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|||+. ..+++..+.+ +++++ |++.+.+...
T Consensus 128 ~~~p~~~~~~~~~l~~l~~~~~L~pg--------G~l~i~~~~~ 163 (202)
T 2fpo_A 128 VDPPFRRGLLEETINLLEDNGWLADE--------ALIYVESEVE 163 (202)
T ss_dssp ECCSSSTTTHHHHHHHHHHTTCEEEE--------EEEEEEEEGG
T ss_pred ECCCCCCCcHHHHHHHHHhcCccCCC--------cEEEEEECCC
Confidence 999943 2345666654 36654 5666665544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=117.69 Aligned_cols=104 Identities=9% Similarity=0.069 Sum_probs=89.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++++|||+|||+|.+++.+|+.+++|+|+|+++.+++.+++|++.+++.++++++++|+.+.+.. ...||.|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~------~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD------LPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT------SCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc------CCCCCEE
Confidence 5688999999999999999999998899999999999999999999999985699999999885431 3479999
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+++...... ++..+.++|+++ |++-+.+..
T Consensus 127 ~~~~~~~~~-~l~~~~~~Lkpg--------G~lv~~~~~ 156 (204)
T 3njr_A 127 FIGGGGSQA-LYDRLWEWLAPG--------TRIVANAVT 156 (204)
T ss_dssp EECSCCCHH-HHHHHHHHSCTT--------CEEEEEECS
T ss_pred EECCcccHH-HHHHHHHhcCCC--------cEEEEEecC
Confidence 999855444 999999999986 466666554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=133.11 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=103.0
Q ss_pred eccEEEEEecCeeeecCh-hHHHH--HHHHhcC----CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHH
Q 007525 395 FHHLSLFRCFDTIYWNSK-LATER--QRLLSGF----NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERN 467 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~R-l~tEr--~Riv~~l----~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eN 467 (600)
+.++.|..++..|++..- ..++. ..+.+.+ .++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.+++|
T Consensus 195 g~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n 274 (381)
T 3dmg_A 195 GAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKG 274 (381)
T ss_dssp TEEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHH
T ss_pred CceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 345677878877665532 22222 2222222 3788999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------HHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 468 SVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------TEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 468 aklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
++.|++. ++++++|+.+... ..++||.|++|||... ..++..+.+.|+++ |++.+
T Consensus 275 ~~~~~~~--v~~~~~D~~~~~~------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpG--------G~l~i 338 (381)
T 3dmg_A 275 LEANALK--AQALHSDVDEALT------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPG--------GVFFL 338 (381)
T ss_dssp HHHTTCC--CEEEECSTTTTSC------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEE--------EEEEE
T ss_pred HHHcCCC--eEEEEcchhhccc------cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcC--------cEEEE
Confidence 9999986 7999999988642 1368999999999753 47889999999986 57777
Q ss_pred EeccC
Q 007525 539 YGFSK 543 (600)
Q Consensus 539 Y~F~k 543 (600)
.+...
T Consensus 339 v~n~~ 343 (381)
T 3dmg_A 339 VSNPF 343 (381)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 65543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=119.54 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=97.5
Q ss_pred ccEEEEEecCeeeecChhHHHH---HHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER---QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr---~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
.+..+.+|+...|......+.+ ..+...+.++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.+++|+..+
T Consensus 27 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 106 (205)
T 3grz_A 27 DQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN 106 (205)
T ss_dssp TCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3456667776555444333332 22223367899999999999999999999875 9999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.+ ++++++|+.++. .+.||.|++++|... ..++..+.++++++ |++.+.++..
T Consensus 107 ~~~~-v~~~~~d~~~~~--------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~~ 162 (205)
T 3grz_A 107 GIYD-IALQKTSLLADV--------DGKFDLIVANILAEILLDLIPQLDSHLNED--------GQVIFSGIDY 162 (205)
T ss_dssp TCCC-CEEEESSTTTTC--------CSCEEEEEEESCHHHHHHHGGGSGGGEEEE--------EEEEEEEEEG
T ss_pred CCCc-eEEEeccccccC--------CCCceEEEECCcHHHHHHHHHHHHHhcCCC--------CEEEEEecCc
Confidence 9987 999999997753 468999999998753 35677777777765 5676655554
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-11 Score=110.83 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=93.3
Q ss_pred EEEEecCeeeecC--hhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 399 SLFRCFDTIYWNS--KLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 399 ~F~vD~~kfy~n~--Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
+|.+....|+..+ +...+. ..+++. ..++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++|++.++
T Consensus 2 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 81 (183)
T 2yxd_A 2 KYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFN 81 (183)
T ss_dssp --CCCSTTSCCBTTBCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CccCCchheeeccCCCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 3555555555544 222222 333333 4578899999999999999999977899999999999999999999999
Q ss_pred CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 473 LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 473 l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
+.+ ++++++|+.+.+. ...||.|+++++.....++..+.++ ++ |++.+..+
T Consensus 82 ~~~-~~~~~~d~~~~~~-------~~~~D~i~~~~~~~~~~~l~~~~~~--~g--------G~l~~~~~ 132 (183)
T 2yxd_A 82 IKN-CQIIKGRAEDVLD-------KLEFNKAFIGGTKNIEKIIEILDKK--KI--------NHIVANTI 132 (183)
T ss_dssp CCS-EEEEESCHHHHGG-------GCCCSEEEECSCSCHHHHHHHHHHT--TC--------CEEEEEES
T ss_pred CCc-EEEEECCcccccc-------CCCCcEEEECCcccHHHHHHHHhhC--CC--------CEEEEEec
Confidence 964 9999999987432 3579999999985556778887776 43 46666554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=124.19 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=83.1
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCC-CcEEEEEcChHHHHHHHHHhhcCCc-ccE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGRRFIDAMFASQKAHK-ITQ 502 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~-nrV~~i~gDare~l~~l~~~~~~~~-fD~ 502 (600)
++.+|||+|||+|.+++.+++++ .+|+|+|+|+.+++.+++|++.|++. ++++++++|+.+++..+ ..+. ||.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----QNQPHFDV 128 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----CSSCCEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh----ccCCCCCE
Confidence 68899999999999999988776 49999999999999999999999994 35999999998875311 1357 999
Q ss_pred EEeCCCcc---hHHHHHHH--HHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 503 VVMNLPND---ATEFLDAF--RGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVmNpP~~---a~eFLdaa--~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|++|||.. ..+++..+ .++|+++ |++.+.+....
T Consensus 129 I~~~~~~~~~~~~~~l~~~~~~~~Lkpg--------G~l~i~~~~~~ 167 (201)
T 2ift_A 129 VFLDPPFHFNLAEQAISLLCENNWLKPN--------ALIYVETEKDK 167 (201)
T ss_dssp EEECCCSSSCHHHHHHHHHHHTTCEEEE--------EEEEEEEESSS
T ss_pred EEECCCCCCccHHHHHHHHHhcCccCCC--------cEEEEEECCCC
Confidence 99999943 23455555 3346664 56666555443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=123.91 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=84.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhh--CC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAK--IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAk--kg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||+|.+++.+|. .+ .+|+|+|+++.+++.+++|++.+++.+ ++++++|+.++...+.. ..+.|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~--~~~~f 157 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN-TIIINADMRKYKDYLLK--NEIFF 157 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHH--TTCCE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc-EEEEeCChHhcchhhhh--ccccC
Confidence 56899999999999999999997 35 699999999999999999999999985 99999999987543211 14679
Q ss_pred cEEEeCCCcch----------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA----------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a----------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|||.++ .++++.+.++++++
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 204 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD 204 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999864 46788899999886
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=127.72 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=96.2
Q ss_pred EEEEeccEEEEEecCeeeecChh--------HHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEe
Q 007525 391 TMLLFHHLSLFRCFDTIYWNSKL--------ATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV---KRVYAND 455 (600)
Q Consensus 391 t~vkEnG~~F~vD~~kfy~n~Rl--------~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvD 455 (600)
..+.++.+.+.+|.+.--|..|. ..|. ..++.. ..++..|||+|||+|++++.+|..+ .+|+|+|
T Consensus 156 v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~D 235 (354)
T 3tma_A 156 VDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGD 235 (354)
T ss_dssp EEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEE
Confidence 34556777788887642221110 1122 223332 5678999999999999999999965 7999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------HHHHHHHHHHhc
Q 007525 456 LNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------TEFLDAFRGIYR 523 (600)
Q Consensus 456 iNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------~eFLdaa~~lLk 523 (600)
+++.+++.+++|++.++++ +++++++|+.++.. +...||+|++|||+.. ..++..+.++++
T Consensus 236 i~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~------~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk 308 (354)
T 3tma_A 236 LDEKRLGLAREAALASGLS-WIRFLRADARHLPR------FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP 308 (354)
T ss_dssp SCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG------TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc------ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 69999999998742 2356899999999842 356777888887
Q ss_pred CC
Q 007525 524 DR 525 (600)
Q Consensus 524 ~~ 525 (600)
++
T Consensus 309 pg 310 (354)
T 3tma_A 309 PG 310 (354)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=117.33 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=92.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+......+.|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 346789999999999999999987 67999999999999999999999999888999999999887654311001689
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.|++|++.. ...++..+.++++++ |++-++...
T Consensus 142 D~v~~~~~~~~~~~~l~~~~~~L~pg--------G~lv~~~~~ 176 (225)
T 3tr6_A 142 DLIYIDADKANTDLYYEESLKLLREG--------GLIAVDNVL 176 (225)
T ss_dssp EEEEECSCGGGHHHHHHHHHHHEEEE--------EEEEEECSS
T ss_pred cEEEECCCHHHHHHHHHHHHHhcCCC--------cEEEEeCCC
Confidence 9999999865 457899999999986 577665543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=129.57 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=104.3
Q ss_pred EEeccEEEEEecCeeeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNa 468 (600)
+.+.+++|..++..|.+..-.. ....+++.+ .++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.+++|+
T Consensus 188 ~~~~~~~~~~~pg~Fs~~~~d~-~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~ 266 (375)
T 4dcm_A 188 LEGTDWTIHNHANVFSRTGLDI-GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 266 (375)
T ss_dssp ETTTTEEEEECTTCTTCSSCCH-HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH
T ss_pred ecCCceEEEeCCCcccCCcccH-HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHH
Confidence 3456778888887766643322 223345543 34589999999999999999998 579999999999999999999
Q ss_pred HHcCCCC--cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCCCCCCCCCccEEE
Q 007525 469 VLNKLEK--KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND---------ATEFLDAFRGIYRDRPEDAKFTFPKIH 537 (600)
Q Consensus 469 klNgl~n--rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~~~~g~~~~p~IH 537 (600)
+.|++.+ +++++.+|+.+.+ +.++||.|++|||.. +.+++..+.+.|+++ |++.
T Consensus 267 ~~ngl~~~~~v~~~~~D~~~~~-------~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~ 331 (375)
T 4dcm_A 267 ETNMPEALDRCEFMINNALSGV-------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN--------GELY 331 (375)
T ss_dssp HHHCGGGGGGEEEEECSTTTTC-------CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE--------EEEE
T ss_pred HHcCCCcCceEEEEechhhccC-------CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC--------cEEE
Confidence 9999864 4888999998743 246899999999964 236889999999986 5777
Q ss_pred EEeccC
Q 007525 538 LYGFSK 543 (600)
Q Consensus 538 vY~F~k 543 (600)
+.+...
T Consensus 332 iv~n~~ 337 (375)
T 4dcm_A 332 IVANRH 337 (375)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 766544
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=121.32 Aligned_cols=97 Identities=22% Similarity=0.125 Sum_probs=60.3
Q ss_pred cChhHHHH--HHHHhcC---CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 410 NSKLATER--QRLLSGF---NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 410 n~Rl~tEr--~Riv~~l---~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
.+|-.++. ..+++.+ .++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.+++|+..+++ +++++++
T Consensus 9 ~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~ 86 (215)
T 4dzr_A 9 IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAA 86 (215)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHH
T ss_pred CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEc
Confidence 35555554 3444443 67899999999999999999998 45999999999999999999999998 4999999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|+.+.+..... ..++||.|++|||+.
T Consensus 87 d~~~~~~~~~~--~~~~fD~i~~npp~~ 112 (215)
T 4dzr_A 87 DGIEWLIERAE--RGRPWHAIVSNPPYI 112 (215)
T ss_dssp HHHHHHHHHHH--TTCCBSEEEECCCCC
T ss_pred chHhhhhhhhh--ccCcccEEEECCCCC
Confidence 99886543111 136899999999984
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=118.06 Aligned_cols=150 Identities=10% Similarity=-0.042 Sum_probs=104.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|.+++.+|+. +++|+|+|+++.+++.+.++++.| . +++++++|+.+...... ....|
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~-~v~~~~~d~~~~~~~~~---~~~~~ 148 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--T-NIIPVIEDARHPHKYRM---LIAMV 148 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--T-TEEEECSCTTCGGGGGG---GCCCE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--C-CeEEEEcccCChhhhcc---cCCcE
Confidence 567899999999999999999986 269999999999999999999988 3 59999999987421001 24689
Q ss_pred cEEEeCCCcch--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccc--eEEEEeEEecC
Q 007525 501 TQVVMNLPNDA--TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVN--VEMRRVRLVAP 576 (600)
Q Consensus 501 D~VVmNpP~~a--~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~--~~v~~VR~VAP 576 (600)
|.|++|+|... ..++..+.++|+++ |++.+-++....+...+..++....+ ..+.. +.+..+..+.|
T Consensus 149 D~V~~~~~~~~~~~~~~~~~~~~Lkpg--------G~l~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~~~~~ 219 (233)
T 2ipx_A 149 DVIFADVAQPDQTRIVALNAHTFLRNG--------GHFVISIKANCIDSTASAEAVFASEV-KKMQQENMKPQEQLTLEP 219 (233)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHHEEEE--------EEEEEEEEHHHHCSSSCHHHHHHHHH-HTTGGGTEEEEEEEECTT
T ss_pred EEEEEcCCCccHHHHHHHHHHHHcCCC--------eEEEEEEcccccccCCCHHHHHHHHH-HHHHHCCCceEEEEecCC
Confidence 99999998532 34688899999986 57777555432111112333333333 33333 44444455666
Q ss_pred C-CcEEEEEEEec
Q 007525 577 G-KWMLCASFVLP 588 (600)
Q Consensus 577 ~-K~mycvsFrlp 588 (600)
. ..|+++.++.+
T Consensus 220 ~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 220 YERDHAVVVGVYR 232 (233)
T ss_dssp TSSSEEEEEEEEC
T ss_pred ccCCcEEEEEEeC
Confidence 3 34888777653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=124.82 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=82.1
Q ss_pred cEEEEEecCeeeec--ChhHHHH--HHHHhcCC----CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHH
Q 007525 397 HLSLFRCFDTIYWN--SKLATER--QRLLSGFN----FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 397 G~~F~vD~~kfy~n--~Rl~tEr--~Riv~~l~----~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~e 466 (600)
|..|.++...++.. +|..+++ ..+++.+. ++.+|||+|||+|.+++.+|++ +++|+|+|+++.+++.+++
T Consensus 28 ~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~ 107 (254)
T 2h00_A 28 GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK 107 (254)
T ss_dssp CCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred CeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 34445544433332 2344444 34444433 5789999999999999999876 6799999999999999999
Q ss_pred HHHHcCCCCcEEEEEcChHHH-HHHHHHhhcCCcccEEEeCCCcch
Q 007525 467 NSVLNKLEKKIEVFNMDGRRF-IDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 467 NaklNgl~nrV~~i~gDare~-l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
|++.|++.++++++++|+.+. ... +.......||.|++|||+..
T Consensus 108 ~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~~fD~i~~npp~~~ 152 (254)
T 2h00_A 108 NVEQNNLSDLIKVVKVPQKTLLMDA-LKEESEIIYDFCMCNPPFFA 152 (254)
T ss_dssp HHHHTTCTTTEEEEECCTTCSSTTT-STTCCSCCBSEEEECCCCC-
T ss_pred HHHHcCCCccEEEEEcchhhhhhhh-hhcccCCcccEEEECCCCcc
Confidence 999999988899999998762 211 11000147999999999863
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-10 Score=110.13 Aligned_cols=88 Identities=30% Similarity=0.215 Sum_probs=76.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+++.|. +|+|+|+++.+++.+++|++.+++ +++++++|+.++ ...||.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~---------~~~~D~ 115 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---------NSRVDI 115 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---------CCCCSE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc---------CCCCCE
Confidence 34788999999999999999999874 899999999999999999999998 499999999874 247999
Q ss_pred EEeCCCcc------hHHHHHHHHHHh
Q 007525 503 VVMNLPND------ATEFLDAFRGIY 522 (600)
Q Consensus 503 VVmNpP~~------a~eFLdaa~~lL 522 (600)
|++|||.. ...+++.+.+++
T Consensus 116 v~~~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 116 VIMNPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp EEECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred EEEcCCCccccCCchHHHHHHHHHhc
Confidence 99999953 246888887776
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=123.22 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=85.5
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcC-CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGF-NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l-~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl 470 (600)
.|..|.++...+. +|..+|. ..+++.+ .++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.+++|++.
T Consensus 78 ~~~~~~~~~~~~i--pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~ 155 (276)
T 2b3t_A 78 WSLPLFVSPATLI--PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH 155 (276)
T ss_dssp TTEEEECCTTSCC--CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCcc--cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 6778888776543 4545555 4555555 56789999999999999999975 57999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+++.+ ++++++|+.+.+. .++||.|++|||+.
T Consensus 156 ~~~~~-v~~~~~d~~~~~~-------~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 156 LAIKN-IHILQSDWFSALA-------GQQFAMIVSNPPYI 187 (276)
T ss_dssp HTCCS-EEEECCSTTGGGT-------TCCEEEEEECCCCB
T ss_pred cCCCc-eEEEEcchhhhcc-------cCCccEEEECCCCC
Confidence 99984 9999999987531 35799999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-11 Score=113.77 Aligned_cols=110 Identities=12% Similarity=-0.004 Sum_probs=92.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+... ....|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~f 134 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE-KYEPF 134 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCCCC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-CCCCc
Confidence 357889999999999999999997 67999999999999999999999999888999999999887654321 12579
Q ss_pred cEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.|++|.+... ..++..+.++++++ |++-++...
T Consensus 135 D~v~~d~~~~~~~~~l~~~~~~L~pg--------G~lv~~~~~ 169 (223)
T 3duw_A 135 DFIFIDADKQNNPAYFEWALKLSRPG--------TVIIGDNVV 169 (223)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTCCTT--------CEEEEESCS
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC--------cEEEEeCCC
Confidence 99999988653 57899999999986 466666443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-12 Score=125.45 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHH---cCCCCcEEEEEcChHHHHHHHHHh-hcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVL---NKLEKKIEVFNMDGRRFIDAMFAS-QKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNakl---Ngl~nrV~~i~gDare~l~~l~~~-~~~ 497 (600)
..++.+|||+|||+|.+++.+|++. .+|+|+|+++.+++.+++|++. |++.++++++++|+.++....... -..
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 4578899999999999999999874 6999999999999999999999 999878999999999875432110 024
Q ss_pred CcccEEEeCCCcch----------------------HHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDA----------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a----------------------~eFLdaa~~lLk~~ 525 (600)
.+||+|++|||+.. ..++..+.++|+++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 163 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG 163 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence 67999999999853 25788888999886
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-11 Score=114.78 Aligned_cols=148 Identities=13% Similarity=-0.010 Sum_probs=103.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.+|+. | .+|+|+|+++.+++.+++|++.+ . ++.++++|+.+...... ....||
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~---~~~~~D 145 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--E-NIIPILGDANKPQEYAN---IVEKVD 145 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--T-TEEEEECCTTCGGGGTT---TSCCEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--C-CeEEEECCCCCcccccc---cCccEE
Confidence 467899999999999999999987 4 69999999999999999998876 4 59999999976211000 125799
Q ss_pred EEEeCCCcc--hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC-CCCchhHHHHHH-HHHhhcc--cceEEEEeEEec
Q 007525 502 QVVMNLPND--ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA-RDPEFDFHERIR-IALVEVA--VNVEMRRVRLVA 575 (600)
Q Consensus 502 ~VVmNpP~~--a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~-~d~~~di~eRI~-~~L~~~~--~~~~v~~VR~VA 575 (600)
.|+.++|.. ...++..+.++|+++ |++.+. +... .+...+.. ++. +.+. .+ .++.+..+.++.
T Consensus 146 ~v~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~-~~~~~~~~~~~~~-~~~~~~l~-~l~~~Gf~~~~~~~~~ 214 (230)
T 1fbn_A 146 VIYEDVAQPNQAEILIKNAKWFLKKG--------GYGMIA-IKARSIDVTKDPK-EIFKEQKE-ILEAGGFKIVDEVDIE 214 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEE-EEGGGTCSSSCHH-HHHHHHHH-HHHHHTEEEEEEEECT
T ss_pred EEEEecCChhHHHHHHHHHHHhCCCC--------cEEEEE-EecCCCCCCCCHH-HhhHHHHH-HHHHCCCEEEEEEccC
Confidence 999998764 256799999999986 466554 3221 11111111 222 2222 22 134555566777
Q ss_pred CC-CcEEEEEEEec
Q 007525 576 PG-KWMLCASFVLP 588 (600)
Q Consensus 576 P~-K~mycvsFrlp 588 (600)
|. ..|+++.++.+
T Consensus 215 ~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 215 PFEKDHVMFVGIWE 228 (230)
T ss_dssp TTSTTEEEEEEEEC
T ss_pred CCccceEEEEEEeC
Confidence 74 56899988864
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=115.18 Aligned_cols=148 Identities=10% Similarity=-0.020 Sum_probs=101.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|.+++.+|+. | ++|+|+|+++.+++.+++|++.+ . +++++++|+.+.... . .....|
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~-~v~~~~~d~~~~~~~-~--~~~~~~ 144 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--R-NIVPILGDATKPEEY-R--ALVPKV 144 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--T-TEEEEECCTTCGGGG-T--TTCCCE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--C-CCEEEEccCCCcchh-h--cccCCc
Confidence 567899999999999999999976 3 69999999999999999999876 3 599999999874210 0 013579
Q ss_pred cEEEeCCCcchH--HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC-CCchhHHHHHH-HHHhhcccceEEEEeEEecC
Q 007525 501 TQVVMNLPNDAT--EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR-DPEFDFHERIR-IALVEVAVNVEMRRVRLVAP 576 (600)
Q Consensus 501 D~VVmNpP~~a~--eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~-d~~~di~eRI~-~~L~~~~~~~~v~~VR~VAP 576 (600)
|.|++|+|.... .++..+.++|+++ |++.++ |.... +...+. +++. ..+......+.+..+.++.|
T Consensus 145 D~v~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~-~~~~~~~~~~~~-~~~~~~~l~~l~~~f~~~~~~~~~~ 214 (227)
T 1g8a_A 145 DVIFEDVAQPTQAKILIDNAEVYLKRG--------GYGMIA-VKSRSIDVTKEP-EQVFREVERELSEYFEVIERLNLEP 214 (227)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEE-EEGGGTCTTSCH-HHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred eEEEECCCCHhHHHHHHHHHHHhcCCC--------CEEEEE-EecCCCCCCCCh-hhhhHHHHHHHHhhceeeeEeccCc
Confidence 999999985433 5689999999986 577666 43322 211122 2333 23322211144444455555
Q ss_pred C-CcEEEEEEEe
Q 007525 577 G-KWMLCASFVL 587 (600)
Q Consensus 577 ~-K~mycvsFrl 587 (600)
. +.||++.++.
T Consensus 215 ~~~~~~~~~~~~ 226 (227)
T 1g8a_A 215 YEKDHALFVVRK 226 (227)
T ss_dssp TSSSEEEEEEEC
T ss_pred ccCCCEEEEEEe
Confidence 3 4588887763
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=114.28 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.+|+.+ ++|+|+|+++.+++.+++|++.+++. +++++++|+.+.+.. ...||
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~------~~~~D 110 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR-NVTLVEAFAPEGLDD------LPDPD 110 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT-TEEEEECCTTTTCTT------SCCCS
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeCChhhhhhc------CCCCC
Confidence 5688999999999999999999986 79999999999999999999999995 599999999776431 35799
Q ss_pred EEEeCCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|+++.+. ....++..+.++++++ |++.+.+...
T Consensus 111 ~i~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~ 145 (204)
T 3e05_A 111 RVFIGGSGGMLEEIIDAVDRRLKSE--------GVIVLNAVTL 145 (204)
T ss_dssp EEEESCCTTCHHHHHHHHHHHCCTT--------CEEEEEECBH
T ss_pred EEEECCCCcCHHHHHHHHHHhcCCC--------eEEEEEeccc
Confidence 99999764 3457899999999986 5777776543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=129.19 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=96.4
Q ss_pred eEEEEEeccEEEEEecCe--e----e---ecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC-------
Q 007525 389 LVTMLLFHHLSLFRCFDT--I----Y---WNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV------- 448 (600)
Q Consensus 389 ~~t~vkEnG~~F~vD~~k--f----y---~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg------- 448 (600)
+.+.+.++++++.+|.+. . | +..--..|. ..++.. ..++..|+|+|||+|+|+|.||..+
T Consensus 145 i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~ 224 (385)
T 3ldu_A 145 IFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGL 224 (385)
T ss_dssp EEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTT
T ss_pred EEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCc
Confidence 455677889999999773 1 1 111111233 233333 5678999999999999999999764
Q ss_pred ---------------------------------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 449 ---------------------------------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 449 ---------------------------------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+|+|+|+++.+++.+++|++.|++.+.|++.++|+.++..
T Consensus 225 ~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~------ 298 (385)
T 3ldu_A 225 NREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS------ 298 (385)
T ss_dssp TSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC------
T ss_pred ccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc------
Confidence 46999999999999999999999998779999999988642
Q ss_pred cCCcccEEEeCCCcch--------HHHHHHHHHHhcC
Q 007525 496 KAHKITQVVMNLPNDA--------TEFLDAFRGIYRD 524 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a--------~eFLdaa~~lLk~ 524 (600)
...||+||+|||+.. .++...+...++.
T Consensus 299 -~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 299 -EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp -SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 357999999999841 2345556666665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=117.44 Aligned_cols=103 Identities=21% Similarity=0.321 Sum_probs=85.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+|+. +..|+|+|+++.+++.+++|++.+++.+ ++++++|+.++... + ..+.||.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~---~~~~~D~ 114 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDY-F---EDGEIDR 114 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGT-S---CTTCCSE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhh-c---CCCCCCE
Confidence 35889999999999999999987 4799999999999999999999999964 99999999874311 1 2457999
Q ss_pred EEeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 503 VVMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 503 VVmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|++++|.. ...++..+.++|+++ |++++.+
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~ 156 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN--------GEIHFKT 156 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT--------CEEEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCC--------cEEEEEe
Confidence 99998852 257999999999986 5777654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=129.81 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=96.1
Q ss_pred eEEEEEeccEEEEEecCee------e---ecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCC------
Q 007525 389 LVTMLLFHHLSLFRCFDTI------Y---WNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK------ 449 (600)
Q Consensus 389 ~~t~vkEnG~~F~vD~~kf------y---~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~------ 449 (600)
+...+.++++.+.+|.+.- | +..--..|. ..++.. ..++..|+|+|||+|+|+|.||..+.
T Consensus 151 i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~ 230 (393)
T 3k0b_A 151 LEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGF 230 (393)
T ss_dssp EEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTT
T ss_pred EEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCc
Confidence 3456778899999996642 1 111111233 223332 56789999999999999999997643
Q ss_pred ----------------------------------EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 450 ----------------------------------RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 450 ----------------------------------~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
+|+|+|+|+.+++.+++|++.+|+.+++++.++|+.++..
T Consensus 231 ~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~------ 304 (393)
T 3k0b_A 231 NREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT------ 304 (393)
T ss_dssp TSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC------
T ss_pred cccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC------
Confidence 4999999999999999999999998889999999988641
Q ss_pred cCCcccEEEeCCCcch--------HHHHHHHHHHhcC
Q 007525 496 KAHKITQVVMNLPNDA--------TEFLDAFRGIYRD 524 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a--------~eFLdaa~~lLk~ 524 (600)
...||+||+|||+.. .++...+...++.
T Consensus 305 -~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 305 -EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp -CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence 357999999999841 2345556666665
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-10 Score=104.05 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=89.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||.|.+++.+++.+.+|+++|+++.+++.+++|++.+++.+++.++++|+.+.+.. ...||.|
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~D~v 104 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK------IPDIDIA 104 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT------SCCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc------CCCCCEE
Confidence 5688999999999999999999988999999999999999999999999955699999999874421 2479999
Q ss_pred EeCCC-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 504 VMNLP-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 504 VmNpP-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+++.+ .....++..+.++++++ |++.+..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~l~~g--------G~l~~~~~~ 136 (192)
T 1l3i_A 105 VVGGSGGELQEILRIIKDKLKPG--------GRIIVTAIL 136 (192)
T ss_dssp EESCCTTCHHHHHHHHHHTEEEE--------EEEEEEECB
T ss_pred EECCchHHHHHHHHHHHHhcCCC--------cEEEEEecC
Confidence 99987 44568899999999886 577666553
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=106.75 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=88.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..++.+|||+|||+|.+++.+++. +++|+++|+++.+++.+++|++.+++.+++ ++++|+.+.+.. ..+.||
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-----~~~~~D 96 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-----VPDNPD 96 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-----CCSCCS
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-----cCCCCC
Confidence 567889999999999999999987 579999999999999999999999998568 899998765431 126899
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|+++.+.....++..+.++++++ |++.+.++..
T Consensus 97 ~i~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~~ 130 (178)
T 3hm2_A 97 VIFIGGGLTAPGVFAAAWKRLPVG--------GRLVANAVTV 130 (178)
T ss_dssp EEEECC-TTCTTHHHHHHHTCCTT--------CEEEEEECSH
T ss_pred EEEECCcccHHHHHHHHHHhcCCC--------CEEEEEeecc
Confidence 999998765567899999999986 5776666544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=120.57 Aligned_cols=80 Identities=29% Similarity=0.265 Sum_probs=73.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+|+.|.+|+|+|+++.+++.+++|++.+++.++++++++|+.++.. ...||.|+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~D~v~ 149 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-------FLKADVVF 149 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-------GCCCSEEE
T ss_pred cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc-------cCCCCEEE
Confidence 47899999999999999999999999999999999999999999999996569999999988751 46899999
Q ss_pred eCCCcch
Q 007525 505 MNLPNDA 511 (600)
Q Consensus 505 mNpP~~a 511 (600)
+|||...
T Consensus 150 ~~~~~~~ 156 (241)
T 3gdh_A 150 LSPPWGG 156 (241)
T ss_dssp ECCCCSS
T ss_pred ECCCcCC
Confidence 9999864
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-11 Score=119.08 Aligned_cols=177 Identities=14% Similarity=0.077 Sum_probs=117.4
Q ss_pred EecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHh---c--CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEE
Q 007525 383 LAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLS---G--FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYAN 454 (600)
Q Consensus 383 LaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~---~--l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~Av 454 (600)
+||+.- ++..|..|+. ||++-+.=-..+++ . +++|++|||+|||+|+++..+|+. | .+|||+
T Consensus 39 vyge~~----~~~~~~e~r~------w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~av 108 (233)
T 4df3_A 39 VYGERI----FRYNGEEYRE------WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGV 108 (233)
T ss_dssp SSSCCE----EEETTEEEEE------CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEE
T ss_pred ccCceE----EEcCCceeee------ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEE
Confidence 466642 3346776764 77654321122332 1 689999999999999999999986 3 599999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc--hHHHHHHHHHHhcCCCCCCCCC
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND--ATEFLDAFRGIYRDRPEDAKFT 532 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~--a~eFLdaa~~lLk~~~~~g~~~ 532 (600)
|++|++++.|+++++.. . ++.++.+|+....... .....+|.|++|.+.. ...++..+.+.||++
T Consensus 109 D~s~~~~~~l~~~a~~~--~-ni~~V~~d~~~p~~~~---~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG------- 175 (233)
T 4df3_A 109 EFAPRVMRDLLTVVRDR--R-NIFPILGDARFPEKYR---HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDG------- 175 (233)
T ss_dssp ECCHHHHHHHHHHSTTC--T-TEEEEESCTTCGGGGT---TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-------
T ss_pred eCCHHHHHHHHHhhHhh--c-CeeEEEEeccCccccc---cccceEEEEEEeccCChhHHHHHHHHHHhccCC-------
Confidence 99999999999988654 3 4899999987643211 1246799999998765 357899999999987
Q ss_pred ccEEEEEeccCCCCC---chhHHHHHHHHHhhcccceEEEEeEEecCC-CcEEEEEE
Q 007525 533 FPKIHLYGFSKARDP---EFDFHERIRIALVEVAVNVEMRRVRLVAPG-KWMLCASF 585 (600)
Q Consensus 533 ~p~IHvY~F~k~~d~---~~di~eRI~~~L~~~~~~~~v~~VR~VAP~-K~mycvsF 585 (600)
|.+.+.......+. .....++..+.|.+ .++.+..+.+..|- ..|+++-.
T Consensus 176 -G~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~--~GF~l~e~i~L~pf~~~H~lv~~ 229 (233)
T 4df3_A 176 -GYMLMAIKARSIDVTTEPSEVYKREIKTLMD--GGLEIKDVVHLDPFDRDHAMIYA 229 (233)
T ss_dssp -EEEEEEEECCHHHHHTCCCHHHHHHHHHHHH--TTCCEEEEEECTTTSTTEEEEEE
T ss_pred -CEEEEEEecccCCCCCChHHHHHHHHHHHHH--CCCEEEEEEccCCCCCceEEEEE
Confidence 46655444332211 11222333334433 24566667788884 45776543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=117.68 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++.+|||+|||+|.+++.+|+. +..|+|+|+++.+++.+++|++.+++.| ++++++|+.+++...+ +.+.+|.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~---~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMI---PDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHS---CTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHc---CCCChheE
Confidence 6789999999999999999986 4689999999999999999999999987 9999999999876543 35789999
Q ss_pred EeC--CCcc-h---------HHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMN--LPND-A---------TEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmN--pP~~-a---------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+++ .|.. . .+|+..+.++|+++ |++++-+
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG--------G~l~i~t 150 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG--------GVFHMAT 150 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC--------cEEEEEe
Confidence 997 3321 1 25999999999987 6777765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=112.38 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=90.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+...+....|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 457889999999999999999985 57999999999999999999999999777999999999887654321001579
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|++|++.. ...++..+.++++++ |++.+...
T Consensus 147 D~v~~d~~~~~~~~~l~~~~~~L~pg--------G~lv~~~~ 180 (229)
T 2avd_A 147 DVAVVDADKENCSAYYERCLQLLRPG--------GILAVLRV 180 (229)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEEE--------EEEEEECC
T ss_pred cEEEECCCHHHHHHHHHHHHHHcCCC--------eEEEEECC
Confidence 9999998764 357899999999986 56666543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=127.34 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=95.0
Q ss_pred EEEEEeccEEEEEecCee------ee---cChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC--------
Q 007525 390 VTMLLFHHLSLFRCFDTI------YW---NSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV-------- 448 (600)
Q Consensus 390 ~t~vkEnG~~F~vD~~kf------y~---n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg-------- 448 (600)
.+.+.++.+++.+|.+.- |. ..--..|. ..++.. ..++..|+|+|||+|+|+|.||..+
T Consensus 145 ~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~ 224 (384)
T 3ldg_A 145 EISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFN 224 (384)
T ss_dssp EEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTT
T ss_pred EEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCcc
Confidence 345667888888987642 21 11111233 223332 5678999999999999999999754
Q ss_pred --------------------------------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 449 --------------------------------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 449 --------------------------------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+|+|+|+|+.|++.+++|++.+|+.+.+++.++|+.++..
T Consensus 225 R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~------- 297 (384)
T 3ldg_A 225 RDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT------- 297 (384)
T ss_dssp CCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------
T ss_pred ccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------
Confidence 24999999999999999999999999889999999988642
Q ss_pred CCcccEEEeCCCcc--------hHHHHHHHHHHhcC
Q 007525 497 AHKITQVVMNLPND--------ATEFLDAFRGIYRD 524 (600)
Q Consensus 497 ~~~fD~VVmNpP~~--------a~eFLdaa~~lLk~ 524 (600)
...||+||+|||+. ..++...+...++.
T Consensus 298 ~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 298 NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 35799999999974 12455666667765
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=114.38 Aligned_cols=107 Identities=7% Similarity=0.010 Sum_probs=90.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++|+++++|+.+++..+. ..+.|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~---~~~~f 137 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG---ECPAF 137 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC---SCCCC
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC---CCCCe
Confidence 457889999999999999999987 679999999999999999999999998789999999998775321 12489
Q ss_pred cEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|++|.+... ..+++.+.++++++ |+|-+...
T Consensus 138 D~V~~d~~~~~~~~~l~~~~~~LkpG--------G~lv~~~~ 171 (248)
T 3tfw_A 138 DLIFIDADKPNNPHYLRWALRYSRPG--------TLIIGDNV 171 (248)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTCCTT--------CEEEEECC
T ss_pred EEEEECCchHHHHHHHHHHHHhcCCC--------eEEEEeCC
Confidence 99999987643 57899999999986 46665544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=118.71 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=89.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.+++.++++++++|+.+.+ +...|
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 163 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EEENV 163 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC-------CCCSE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc-------CCCCc
Confidence 568999999999999999999987 57999999999999999999999999888999999998753 24679
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|++|+|.. ..++..+.++++++ |++.+++.
T Consensus 164 D~v~~~~~~~-~~~l~~~~~~L~~g--------G~l~~~~~ 195 (255)
T 3mb5_A 164 DHVILDLPQP-ERVVEHAAKALKPG--------GFFVAYTP 195 (255)
T ss_dssp EEEEECSSCG-GGGHHHHHHHEEEE--------EEEEEEES
T ss_pred CEEEECCCCH-HHHHHHHHHHcCCC--------CEEEEEEC
Confidence 9999999874 57889999999986 57777764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-11 Score=113.78 Aligned_cols=103 Identities=16% Similarity=0.229 Sum_probs=85.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+|+. +..|+|+|+++.+++.+++|++.+++.| ++++++|+.++. ..+ +...+|.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~-~~~---~~~~~d~ 111 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLT-DVF---EPGEVKR 111 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHH-HHC---CTTSCCE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHH-hhc---CcCCcCE
Confidence 36789999999999999999986 5799999999999999999999999976 999999999853 222 2467999
Q ss_pred EEeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 503 VVMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 503 VVmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|+++.|.. ...++..+.++|+++ |.+++.+
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg--------G~l~~~t 153 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG--------GSIHFKT 153 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS--------CEEEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCC--------CEEEEEe
Confidence 99875431 257899999999987 5777754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=124.00 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..++..|||+|||+|.+++.+|..+. +|+|+|+|+.+++.+++|++.+++.+++++.++|+.++.. +...||
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~------~~~~fD 288 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ------YVDSVD 288 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG------TCSCEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc------ccCCcC
Confidence 67889999999999999999999876 9999999999999999999999997679999999998642 246899
Q ss_pred EEEeCCCcch------------HHHHHHHHHHh
Q 007525 502 QVVMNLPNDA------------TEFLDAFRGIY 522 (600)
Q Consensus 502 ~VVmNpP~~a------------~eFLdaa~~lL 522 (600)
.|++|||+.. .++++.+.+++
T Consensus 289 ~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 289 FAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp EEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred EEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 9999999642 34566666666
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=121.07 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=82.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|.+++.+|.. +++|+|+|+++.+++.+++|++.+++.+ ++++++|+.++.. ....|
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~------~~~~f 188 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGE------LNVEF 188 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGG------GCCCE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhccc------ccccC
Confidence 678999999999999999999974 3699999999999999999999999986 9999999988642 14579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|+|.++ .++|..+.++++++
T Consensus 189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG 239 (315)
T 1ixk_A 189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 239 (315)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999642 37888999999986
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=131.22 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=73.6
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc--CCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN--KLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN--gl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.+.+|.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.+++|++.+ |+. +++++++|+.+++.... ...|
T Consensus 90 ~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-~i~~i~~Da~~~L~~~~----~~~f 164 (410)
T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILTGDFKEYLPLIK----TFHP 164 (410)
T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTC-EEEEEESCGGGSHHHHH----HHCC
T ss_pred hcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCC-cEEEEECcHHHhhhhcc----CCCc
Confidence 3556899999999999999999999999999999999999999999999 885 59999999999875421 2469
Q ss_pred cEEEeCCCcch
Q 007525 501 TQVVMNLPNDA 511 (600)
Q Consensus 501 D~VVmNpP~~a 511 (600)
|.|++|||+..
T Consensus 165 DvV~lDPPrr~ 175 (410)
T 3ll7_A 165 DYIYVDPARRS 175 (410)
T ss_dssp SEEEECCEEC-
T ss_pred eEEEECCCCcC
Confidence 99999999854
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=119.52 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+.+.+.+|++|+|+|||+|++++.+|+.+ .+|+|+|+|+.+++.+++|++.|++.++|+++++|+.+.+..
T Consensus 8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~------ 81 (225)
T 3kr9_A 8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE------ 81 (225)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------
T ss_pred HHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc------
Confidence 466778899999999999999999999986 489999999999999999999999998899999999876521
Q ss_pred CCcccEEEeC-CCcc-hHHHHHHHHHHhcC
Q 007525 497 AHKITQVVMN-LPND-ATEFLDAFRGIYRD 524 (600)
Q Consensus 497 ~~~fD~VVmN-pP~~-a~eFLdaa~~lLk~ 524 (600)
...||.|++. --.. ..++|+.+...+++
T Consensus 82 ~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~ 111 (225)
T 3kr9_A 82 TDQVSVITIAGMGGRLIARILEEGLGKLAN 111 (225)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGCTT
T ss_pred CcCCCEEEEcCCChHHHHHHHHHHHHHhCC
Confidence 1269988752 2111 24666666666654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=113.47 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=107.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..+++.+ ++++++|+.+.. . ..++|
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~---~---~~~~f 107 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIP---L---PDNTV 107 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECBTTBCS---S---CSSCE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEecccccCC---C---CCCCe
Confidence 5678999999999999999999875 699999999999999999999999985 999999997753 1 24679
Q ss_pred cEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCch-hH-----HHHHHHHHhhcccceEEEE
Q 007525 501 TQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEF-DF-----HERIRIALVEVAVNVEMRR 570 (600)
Q Consensus 501 D~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~-di-----~eRI~~~L~~~~~~~~v~~ 570 (600)
|.|+++... ....++..+.++++++ |++.+.+|........ .. .+.+...+.. .++..
T Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~Gf~~ 175 (219)
T 3dh0_A 108 DFIFMAFTFHELSEPLKFLEELKRVAKPF--------AYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED----AGIRV 175 (219)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHHEEEE--------EEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH----TTCEE
T ss_pred eEEEeehhhhhcCCHHHHHHHHHHHhCCC--------eEEEEEEecccccccCCchhcccCHHHHHHHHHH----CCCEE
Confidence 999986543 2467899999999986 6788887776443211 11 1223333332 23333
Q ss_pred eEEecCCCcEEEEEEEecc
Q 007525 571 VRLVAPGKWMLCASFVLPE 589 (600)
Q Consensus 571 VR~VAP~K~mycvsFrlp~ 589 (600)
|+....+..++++.++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 176 GRVVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp EEEEEETTTEEEEEEECC-
T ss_pred EEEEeeCCceEEEEEEecc
Confidence 3333334478888888764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-11 Score=119.66 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=80.8
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+.+.+.+|++|+|+|||+|++++.+|+.+ .+|+|+|+||.+++.+++|++.|++.++|++.++|+.+.+. +
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~------~ 87 (230)
T 3lec_A 14 KVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE------E 87 (230)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred HHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc------c
Confidence 466778999999999999999999999986 38999999999999999999999999899999999988752 1
Q ss_pred CCcccEEEe-CCCc-chHHHHHHHHHHhcC
Q 007525 497 AHKITQVVM-NLPN-DATEFLDAFRGIYRD 524 (600)
Q Consensus 497 ~~~fD~VVm-NpP~-~a~eFLdaa~~lLk~ 524 (600)
...||.|++ +.=. ...++|+.....+++
T Consensus 88 ~~~~D~IviaGmGg~lI~~IL~~~~~~l~~ 117 (230)
T 3lec_A 88 ADNIDTITICGMGGRLIADILNNDIDKLQH 117 (230)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGGTT
T ss_pred ccccCEEEEeCCchHHHHHHHHHHHHHhCc
Confidence 236998774 3211 124667766666654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=128.42 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=83.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|.. +++|+|+|+++.+++.+++|++.+|+.+ +.++++|+.++.... .+.|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~-----~~~F 176 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHF-----SGFF 176 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHH-----TTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhc-----cccC
Confidence 578999999999999999999975 3699999999999999999999999986 999999999876432 4689
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|+|++|||.++ .++|+.+.++++++
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 227 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK 227 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999532 16788888899886
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-10 Score=110.82 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+|. .+.+|+|+|+++.+++.+++|++.+++.+ ++++++|+.++... ....++||.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---~~~~~~fD~ 144 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQR---KDVRESYDI 144 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTC---TTTTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhccc---ccccCCccE
Confidence 4788999999999999999995 46799999999999999999999999986 99999999875310 001357999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+++.......++..+.++++++
T Consensus 145 V~~~~~~~~~~~l~~~~~~Lkpg 167 (240)
T 1xdz_A 145 VTARAVARLSVLSELCLPLVKKN 167 (240)
T ss_dssp EEEECCSCHHHHHHHHGGGEEEE
T ss_pred EEEeccCCHHHHHHHHHHhcCCC
Confidence 99987666678899999999986
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=118.10 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=91.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|..++.+|+. +++|+++|+++.+++.+++|++.+++.++|+++++|+.+.+..+...+..++|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 346789999999999999999984 57999999999999999999999999878999999999987664322113689
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|++|.+.. ...+++.+.++|+++ |+|-+...
T Consensus 138 D~V~~d~~~~~~~~~l~~~~~~LkpG--------G~lv~d~~ 171 (242)
T 3r3h_A 138 DFIFIDADKTNYLNYYELALKLVTPK--------GLIAIDNI 171 (242)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHEEEE--------EEEEEECS
T ss_pred eEEEEcCChHHhHHHHHHHHHhcCCC--------eEEEEECC
Confidence 9999998764 357899999999986 57766543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=8.7e-11 Score=113.30 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=84.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+++..+......+.|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 346789999999999999999984 67999999999999999999999999878999999998876532110001579
Q ss_pred cEEEeCCCcchH----HHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDAT----EFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~----eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.|++|.+.... +++... ++|+++ |++-+....
T Consensus 136 D~V~~d~~~~~~~~~~~~~~~~-~~Lkpg--------G~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKG--------TVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT-TCCCTT--------CEEEESCCC
T ss_pred EEEEEcCCcccchHHHHHHHhc-cccCCC--------eEEEEeCCC
Confidence 999999866432 344444 667665 466554443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-11 Score=119.66 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+.+.+.+|++|+|+|||+|++++.+|+.+ .+|+|+|+||.+++.+++|++.|++.++|++.++|+.+.+. +
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~------~ 87 (244)
T 3gnl_A 14 KVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE------K 87 (244)
T ss_dssp HHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred HHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC------c
Confidence 466778999999999999999999999986 38999999999999999999999999889999999988752 1
Q ss_pred CCcccEEEe-CCCc-chHHHHHHHHHHhcC
Q 007525 497 AHKITQVVM-NLPN-DATEFLDAFRGIYRD 524 (600)
Q Consensus 497 ~~~fD~VVm-NpP~-~a~eFLdaa~~lLk~ 524 (600)
...||.|++ +-=. ...++|+.....+++
T Consensus 88 ~~~~D~IviagmGg~lI~~IL~~~~~~L~~ 117 (244)
T 3gnl_A 88 KDAIDTIVIAGMGGTLIRTILEEGAAKLAG 117 (244)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGGTT
T ss_pred cccccEEEEeCCchHHHHHHHHHHHHHhCC
Confidence 235998876 2111 123566666666644
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-10 Score=110.27 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=98.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++|||+|||+|.++..+|+.. ++|+|+|+++.+++.+.++++.. . ++.++.+|+.+..... ...++||
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~-~v~~~~~d~~~~~~~~---~~~~~fD 128 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--N-NIIPLLFDASKPWKYS---GIVEKVD 128 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--S-SEEEECSCTTCGGGTT---TTCCCEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--C-CeEEEEcCCCCchhhc---cccccee
Confidence 4688999999999999999999863 69999999999999888877753 3 4889999987641100 0136799
Q ss_pred EEEeCCCcc--hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC---CchhHH-HHHHHHHhhcccceEEEEeEEec
Q 007525 502 QVVMNLPND--ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD---PEFDFH-ERIRIALVEVAVNVEMRRVRLVA 575 (600)
Q Consensus 502 ~VVmNpP~~--a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d---~~~di~-eRI~~~L~~~~~~~~v~~VR~VA 575 (600)
.|++|.+.. ...++..+.++|+++ |++.+..-....+ ...++. +.++ .+.+. +.+....+..
T Consensus 129 ~V~~~~~~~~~~~~~l~~~~r~Lkpg--------G~l~i~~~~~~~~~~~~~~~~~~~~~~-~l~~~---f~~~~~~~~~ 196 (210)
T 1nt2_A 129 LIYQDIAQKNQIEILKANAEFFLKEK--------GEVVIMVKARSIDSTAEPEEVFKSVLK-EMEGD---FKIVKHGSLM 196 (210)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEEEEHHHHCTTSCHHHHHHHHHH-HHHTT---SEEEEEEECT
T ss_pred EEEEeccChhHHHHHHHHHHHHhCCC--------CEEEEEEecCCccccCCHHHHHHHHHH-HHHhh---cEEeeeecCC
Confidence 999996543 234589999999986 4555542111111 111221 1111 23332 6666677777
Q ss_pred C-CCcEEEEEEE
Q 007525 576 P-GKWMLCASFV 586 (600)
Q Consensus 576 P-~K~mycvsFr 586 (600)
| ++.||.+.++
T Consensus 197 p~~~~h~~~~~~ 208 (210)
T 1nt2_A 197 PYHRDHIFIHAY 208 (210)
T ss_dssp TTCTTEEEEEEE
T ss_pred CCCCCcEEEEEE
Confidence 7 6799998776
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=112.20 Aligned_cols=97 Identities=9% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHH-HHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID-AMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~-~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+|+ .+++|+++|+++.+++.+++|++.+++.++++++++|+.+.+. .+ .++|
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~f 143 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-----DKVY 143 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-----TSCE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-----cCCc
Confidence 34788999999999999999999 4679999999999999999999999998779999999998765 32 3689
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
|.|++|.+.. ...+++.+.++|+++
T Consensus 144 D~V~~~~~~~~~~~~l~~~~~~Lkpg 169 (232)
T 3ntv_A 144 DMIFIDAAKAQSKKFFEIYTPLLKHQ 169 (232)
T ss_dssp EEEEEETTSSSHHHHHHHHGGGEEEE
T ss_pred cEEEEcCcHHHHHHHHHHHHHhcCCC
Confidence 9999998654 457889999999986
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-11 Score=117.47 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=87.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.+ +..+ ++++++|+.+.+ +.+.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~-v~~~~~d~~~~~-------~~~~ 179 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-VRTSRSDIADFI-------SDQM 179 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-EEEECSCTTTCC-------CSCC
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECchhccC-------cCCC
Confidence 568899999999999999999987 679999999999999999999999 8764 999999998743 2457
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
||.|++|+|.. ..+++.+.++++++ |++.+++.
T Consensus 180 fD~Vi~~~~~~-~~~l~~~~~~Lkpg--------G~l~i~~~ 212 (275)
T 1yb2_A 180 YDAVIADIPDP-WNHVQKIASMMKPG--------SVATFYLP 212 (275)
T ss_dssp EEEEEECCSCG-GGSHHHHHHTEEEE--------EEEEEEES
T ss_pred ccEEEEcCcCH-HHHHHHHHHHcCCC--------CEEEEEeC
Confidence 99999999864 57889999999986 57777764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-10 Score=112.06 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=86.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh-cCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ-KAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~-~~~~ 499 (600)
..++.+|||+|||+|+.++.+|+. +++|+++|+++.+++.+++|++.+++.++|+++++|+.+.+..+...+ ..+.
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 356789999999999999999985 679999999999999999999999997789999999999876543210 1367
Q ss_pred ccEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
||.|++|.+.. ...+++.+.++++++
T Consensus 157 fD~V~~d~~~~~~~~~l~~~~~~LkpG 183 (247)
T 1sui_A 157 YDFIFVDADKDNYLNYHKRLIDLVKVG 183 (247)
T ss_dssp BSEEEECSCSTTHHHHHHHHHHHBCTT
T ss_pred EEEEEEcCchHHHHHHHHHHHHhCCCC
Confidence 99999997643 467899999999987
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=114.63 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=91.4
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +.++.+|||+|||+|.+++.+++. |++|+|+|+++.+++.+++++..+++.++++++++|+.++
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------- 134 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-------- 134 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--------
T ss_pred HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--------
Confidence 34444 578899999999999999999998 8999999999999999999999999987799999999875
Q ss_pred cCCcccEEEeCCCc-------------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 496 KAHKITQVVMNLPN-------------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 496 ~~~~fD~VVmNpP~-------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+.||+|+++... ....++..+.++|+++ |++.++++...
T Consensus 135 -~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~ 187 (302)
T 3hem_A 135 -DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD--------GRMLLHTITIP 187 (302)
T ss_dssp -CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT--------CEEEEEEEECC
T ss_pred -CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC--------cEEEEEEEecc
Confidence 2579999986432 1257899999999986 57777777654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=125.40 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=81.4
Q ss_pred CCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+|++|||+|||.|..++.+|.. ++.|+|+|+++.+++.+++|++.+|+.+ ++++++|+.++... ..+.||.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~-----~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAA-----VPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHH-----STTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhh-----ccccCCE
Confidence 8999999999999999999985 3699999999999999999999999986 99999999887532 1457999
Q ss_pred EEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|++|||.++ .++|..+.++++++
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999742 25688888999886
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=126.25 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=82.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||+|..++.+|.. .+.|+|+|+++.+++.+++|++.+|+. +.++++|+.++.... .+.|
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~-----~~~F 171 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAF-----GTYF 171 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHH-----CSCE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhc-----cccC
Confidence 568999999999999999999975 259999999999999999999999997 899999999875321 4689
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|+|++|||.++ .++|+.+.++++++
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 222 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG 222 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999742 45778888888875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=115.89 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=88.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+++|.+|||+|||+|.+++.+|+. |++|+|+|+++.+++.++++++..+...+|+++++|+.++. .+.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~--------~~~ 139 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IEN 139 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC--------CCS
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc--------ccc
Confidence 789999999999999999999975 56999999999999999999999888778999999998752 356
Q ss_pred ccEEEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 500 ITQVVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 500 fD~VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+|.|+++.- .....+|..+.++|+++ |++-+.+.....+
T Consensus 140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG--------G~lii~e~~~~~~ 184 (261)
T 4gek_A 140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPG--------GALVLSEKFSFED 184 (261)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEBCCSS
T ss_pred cccceeeeeeeecCchhHhHHHHHHHHHcCCC--------cEEEEEeccCCCC
Confidence 999998642 12246889999999987 5777776655433
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=110.49 Aligned_cols=109 Identities=11% Similarity=0.008 Sum_probs=90.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh-cCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ-KAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~-~~~~ 499 (600)
..++.+|||+|||+|+.++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+...+ ..+.
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 456789999999999999999985 579999999999999999999999998789999999999876543211 1357
Q ss_pred ccEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 500 ITQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 500 fD~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
||.|++|.+.. ...+++.+.++++++ |+|.+..
T Consensus 148 fD~I~~d~~~~~~~~~l~~~~~~L~pG--------G~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDADKPNYIKYHERLMKLVKVG--------GIVAYDN 181 (237)
T ss_dssp EEEEEECSCGGGHHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred cCEEEECCchHHHHHHHHHHHHhcCCC--------eEEEEec
Confidence 99999997653 357899999999986 5676643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.13 E-value=8.2e-11 Score=115.67 Aligned_cols=105 Identities=12% Similarity=0.304 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc--------CCCCcEEEEEcChHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN--------KLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN--------gl~nrV~~i~gDare~l~~l~~ 493 (600)
+.++.+|||+|||+|.+++.+|+.+ ..|+|+|+++.+++.+++|++.| ++.| ++++++|+.+++...+
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l~~~~- 124 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFLPNFF- 124 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCGGGTS-
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHHHHhc-
Confidence 4578899999999999999999875 58999999999999999999988 8875 9999999988654322
Q ss_pred hhcCCcccEEEeCCCcch------------HHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 494 SQKAHKITQVVMNLPNDA------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~a------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
....+|.|+++.|..- .+++..+.++|+++ |++.+.+
T Consensus 125 --~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg--------G~l~~~t 173 (246)
T 2vdv_E 125 --EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG--------GVVYTIT 173 (246)
T ss_dssp --CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred --cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC--------CEEEEEe
Confidence 2457898887654421 47999999999986 5777753
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=114.48 Aligned_cols=95 Identities=6% Similarity=-0.036 Sum_probs=82.6
Q ss_pred CCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCC-CcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~-nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.+|||+|||+|+.++.+|+. +++|+++|+++.+++.+++|++.+++. ++++++++|+.+++..+ ..++||.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~----~~~~fD~ 132 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL----ANDSYQL 132 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS----CTTCEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh----cCCCcCe
Confidence 449999999999999999984 579999999999999999999999998 78999999999986432 1468999
Q ss_pred EEeCCCcch-HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
|++|.+... ..+++.+.++++++
T Consensus 133 V~~d~~~~~~~~~l~~~~~~LkpG 156 (221)
T 3dr5_A 133 VFGQVSPMDLKALVDAAWPLLRRG 156 (221)
T ss_dssp EEECCCTTTHHHHHHHHHHHEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCC
Confidence 999987643 56899999999986
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=116.53 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=89.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.+++.++++++++|+.+.+ +...|
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 182 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-------DEKDV 182 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC-------SCCSE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc-------cCCcc
Confidence 567899999999999999999987 46999999999999999999999999656999999998763 24579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.|++|+|.. ..++..+.++++++ |++.+++..
T Consensus 183 D~V~~~~~~~-~~~l~~~~~~L~pg--------G~l~~~~~~ 215 (277)
T 1o54_A 183 DALFLDVPDP-WNYIDKCWEALKGG--------GRFATVCPT 215 (277)
T ss_dssp EEEEECCSCG-GGTHHHHHHHEEEE--------EEEEEEESS
T ss_pred CEEEECCcCH-HHHHHHHHHHcCCC--------CEEEEEeCC
Confidence 9999999864 57889999999986 578877743
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-10 Score=108.93 Aligned_cols=110 Identities=9% Similarity=0.045 Sum_probs=89.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|++++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+...+..+.|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 346789999999999999999986 56999999999999999999999999878999999999887654311001679
Q ss_pred cEEEeCCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|++|.+. ....+++.+.++++++ |+|.+...
T Consensus 150 D~V~~d~~~~~~~~~l~~~~~~Lkpg--------G~lv~~~~ 183 (232)
T 3cbg_A 150 DLIFIDADKRNYPRYYEIGLNLLRRG--------GLMVIDNV 183 (232)
T ss_dssp EEEEECSCGGGHHHHHHHHHHTEEEE--------EEEEEECT
T ss_pred CEEEECCCHHHHHHHHHHHHHHcCCC--------eEEEEeCC
Confidence 999999874 3467899999999986 56666433
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=113.62 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=82.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++++|.. +.+|+++|+++.+++.+++|++.+++.| |+++++|+.++.... ...++||.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~---~~~~~fD~ 154 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA---GHREAYAR 154 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST---TTTTCEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc---ccCCCceE
Confidence 46889999999999999999985 5799999999999999999999999987 999999998864210 01368999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+++--.....+++.+.++++++
T Consensus 155 I~s~a~~~~~~ll~~~~~~Lkpg 177 (249)
T 3g89_A 155 AVARAVAPLCVLSELLLPFLEVG 177 (249)
T ss_dssp EEEESSCCHHHHHHHHGGGEEEE
T ss_pred EEECCcCCHHHHHHHHHHHcCCC
Confidence 99976555567888999999886
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=110.16 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=87.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++++|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.+++..+++++++|+.+... ....||.|
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~v 162 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV------PEGIFHAA 162 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC------CTTCBSEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc------CCCcccEE
Confidence 468899999999999999999998889999999999999999999999996669999999987530 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
++|+|. ...++..+.++++++ |++.+++.
T Consensus 163 ~~~~~~-~~~~l~~~~~~L~~g--------G~l~~~~~ 191 (248)
T 2yvl_A 163 FVDVRE-PWHYLEKVHKSLMEG--------APVGFLLP 191 (248)
T ss_dssp EECSSC-GGGGHHHHHHHBCTT--------CEEEEEES
T ss_pred EECCcC-HHHHHHHHHHHcCCC--------CEEEEEeC
Confidence 999985 357889999999986 46766664
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=121.47 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=87.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+| |+|.+++.+++.+ .+|+++|+++.+++.+++|++.+++. +++++++|+.+.+... ..+.||.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~----~~~~fD~ 244 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY----ALHKFDT 244 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT----TSSCBSE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh----ccCCccE
Confidence 3688999999 9999999999875 59999999999999999999999998 5999999998843210 1357999
Q ss_pred EEeCCCcch---HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 503 VVMNLPNDA---TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 503 VVmNpP~~a---~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++|||... ..|+..+.++++++ |.+.+|.+..
T Consensus 245 Vi~~~p~~~~~~~~~l~~~~~~Lkpg--------G~~~~~~~~~ 280 (373)
T 2qm3_A 245 FITDPPETLEAIRAFVGRGIATLKGP--------RCAGYFGITR 280 (373)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTBCST--------TCEEEEEECT
T ss_pred EEECCCCchHHHHHHHHHHHHHcccC--------CeEEEEEEec
Confidence 999999864 47888888999876 4566676665
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-09 Score=100.92 Aligned_cols=127 Identities=19% Similarity=0.083 Sum_probs=89.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+++++ +|+|+|+|+.+++. .++++++++|+.+... .++||.|+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~-------~~~fD~i~ 83 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSIN-------QESVDVVV 83 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBC-------GGGCSEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcc-------cCCCCEEE
Confidence 567899999999999999999999 99999999999997 2348899999987431 35799999
Q ss_pred eCCCcc-------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceE-EEE
Q 007525 505 MNLPND-------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVE-MRR 570 (600)
Q Consensus 505 mNpP~~-------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~-v~~ 570 (600)
+|||.. ..+++..+.+.+ ++ |++.+.+..... .+.+.+.+.+.. .. ...
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pg--------G~l~~~~~~~~~------~~~l~~~l~~~g--f~~~~~ 146 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TV--------GMLYLLVIEANR------PKEVLARLEERG--YGTRIL 146 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CS--------SEEEEEEEGGGC------HHHHHHHHHHTT--CEEEEE
T ss_pred ECCCCccCCccccccCCcchHHHHHHHHhhC-CC--------CEEEEEEecCCC------HHHHHHHHHHCC--CcEEEE
Confidence 999986 357778888777 43 466666654321 122333333321 22 223
Q ss_pred eEEecCCCcEEEEEEE
Q 007525 571 VRLVAPGKWMLCASFV 586 (600)
Q Consensus 571 VR~VAP~K~mycvsFr 586 (600)
.+...+....|++.++
T Consensus 147 ~~~~~~~e~~~~~~~~ 162 (170)
T 3q87_B 147 KVRKILGETVYIIKGE 162 (170)
T ss_dssp EEEECSSSEEEEEEEE
T ss_pred EeeccCCceEEEEEEe
Confidence 4455666677776655
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=103.86 Aligned_cols=142 Identities=12% Similarity=0.175 Sum_probs=106.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||.|.++..+++.+.+|+|+|+++.+++.++++ .. +++++++| ..+ +.+.||.|
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~-~v~~~~~d-~~~--------~~~~~D~v 79 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FD-SVITLSDP-KEI--------PDNSVDFI 79 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CT-TSEEESSG-GGS--------CTTCEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CC-CcEEEeCC-CCC--------CCCceEEE
Confidence 56788999999999999999999877999999999999999998 33 48999999 211 24689999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCch-hHHHHH-HHHHhhcccceEEEEeEEecCC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEF-DFHERI-RIALVEVAVNVEMRRVRLVAPG 577 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~-di~eRI-~~~L~~~~~~~~v~~VR~VAP~ 577 (600)
+++... ....++..+.++++++ |++.+.+|........ +...+. ...+...+. ++..++....+
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~ 149 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRILKDD--------GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT 149 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHHEEEE--------EEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred EEccchhcccCHHHHHHHHHHhcCCC--------CEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence 986543 2457899999999986 6888888876543221 111111 122333333 67778888888
Q ss_pred CcEEEEEEEeccc
Q 007525 578 KWMLCASFVLPES 590 (600)
Q Consensus 578 K~mycvsFrlp~~ 590 (600)
.++|.+.|+.+..
T Consensus 150 ~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 150 PYHFGLVLKRKTS 162 (170)
T ss_dssp TTEEEEEEEECCC
T ss_pred CceEEEEEecCCC
Confidence 8999999998643
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7.5e-11 Score=115.83 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=81.2
Q ss_pred HHHhcC--CCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHc---CCCCc-------------
Q 007525 419 RLLSGF--NFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLN---KLEKK------------- 476 (600)
Q Consensus 419 Riv~~l--~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklN---gl~nr------------- 476 (600)
.+++.+ .++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.+++|+..+ ++.++
T Consensus 42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 1o9g_A 42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGK 121 (250)
T ss_dssp HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhccc
Confidence 344443 25679999999999999999986 469999999999999999999888 66443
Q ss_pred ------------EE-------------EEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHH
Q 007525 477 ------------IE-------------VFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAF 518 (600)
Q Consensus 477 ------------V~-------------~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa 518 (600)
++ ++++|+.+....... .....||.|++|||... ..++..+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 122 PSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV-LAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-HTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhccccccccccceeecccccccccccc-cCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 999998875421000 01347999999999742 2688889
Q ss_pred HHHhcCC
Q 007525 519 RGIYRDR 525 (600)
Q Consensus 519 ~~lLk~~ 525 (600)
.++|+++
T Consensus 201 ~~~Lkpg 207 (250)
T 1o9g_A 201 ASALPAH 207 (250)
T ss_dssp HHHSCTT
T ss_pred HHhcCCC
Confidence 9999886
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=110.86 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=87.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEcChHHH-HHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGRRF-IDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~gDare~-l~~l~~~~~~~ 498 (600)
+.++++|||+|||+|.+++.+++. +++|+++|+++.+++.+++|++.+ +.. +++++++|+.+. + +.+
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~~~-------~~~ 165 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVE-NVRFHLGKLEEAEL-------EEA 165 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCC-CEEEEESCGGGCCC-------CTT
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-CEEEEECchhhcCC-------CCC
Confidence 578999999999999999999987 579999999999999999999998 854 599999999876 2 235
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.||.|++|+|.. ..++..+.++++++ |++.+++..
T Consensus 166 ~~D~v~~~~~~~-~~~l~~~~~~L~~g--------G~l~~~~~~ 200 (258)
T 2pwy_A 166 AYDGVALDLMEP-WKVLEKAALALKPD--------RFLVAYLPN 200 (258)
T ss_dssp CEEEEEEESSCG-GGGHHHHHHHEEEE--------EEEEEEESC
T ss_pred CcCEEEECCcCH-HHHHHHHHHhCCCC--------CEEEEEeCC
Confidence 799999998864 47889999999986 578877743
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-10 Score=111.45 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=85.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.+++|+..+++ +++++++|+.+.. ..+.||.|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAAN-------IQENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCC-------CCSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccccc-------ccCCccEEEE
Confidence 788999999999999999999999999999999999999999999998 4999999998753 1467999999
Q ss_pred CCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 506 NLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 506 NpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+.+. ....++..+.++++++ |++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~ 226 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVG--------GYNLIVAAMS 226 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEE--------EEEEEEEEBC
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCC--------cEEEEEEecC
Confidence 8643 2357899999999986 5655555543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=107.00 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=82.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+.. ..+ ||
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~-fD 128 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG-----QRD-ID 128 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT-----CCS-EE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc-----CCC-CC
Confidence 46789999999999999999986 6799999999999999999999999987899999999887642 135 99
Q ss_pred EEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
.|++|.+. ....+++.+.++|+++
T Consensus 129 ~v~~~~~~~~~~~~l~~~~~~Lkpg 153 (210)
T 3c3p_A 129 ILFMDCDVFNGADVLERMNRCLAKN 153 (210)
T ss_dssp EEEEETTTSCHHHHHHHHGGGEEEE
T ss_pred EEEEcCChhhhHHHHHHHHHhcCCC
Confidence 99999754 3467899999999886
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-10 Score=109.61 Aligned_cols=106 Identities=11% Similarity=0.101 Sum_probs=89.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..++.+|||+|||+|.+++.+|+. +.+|+++|+++.+++.+++|++.+++.++++++++|+.+.+.... ..+.||
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~fD 128 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE---LYPLFD 128 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT---TSCCEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc---cCCCcc
Confidence 457889999999999999999987 579999999999999999999999998779999999998765421 135799
Q ss_pred EEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 502 QVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 502 ~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.|+++.+.. ...++..+.++++++ |++.+..
T Consensus 129 ~I~~~~~~~~~~~~l~~~~~~L~pg--------G~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAKGQYRRFFDMYSPMVRPG--------GLILSDN 160 (233)
T ss_dssp EEEEEGGGSCHHHHHHHHGGGEEEE--------EEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHcCCC--------eEEEEEc
Confidence 999998864 357889999999886 5666653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-10 Score=102.59 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=85.4
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++++..+++.+ ++++++|+.+.. ....||.|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~-------~~~~~D~v~ 102 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT-------FDRQYDFIL 102 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCC-------CCCCEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCC-------CCCCceEEE
Confidence 467899999999999999999999999999999999999999999999875 999999998752 136799999
Q ss_pred eCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 505 MNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 505 mNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
++... ....++..+.++++++ |++.+.++.
T Consensus 103 ~~~~l~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~ 138 (199)
T 2xvm_A 103 STVVLMFLEAKTIPGLIANMQRCTKPG--------GYNLIVAAM 138 (199)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHTEEEE--------EEEEEEEEB
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCC--------eEEEEEEee
Confidence 87432 3457899999999986 566665543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=116.62 Aligned_cols=105 Identities=12% Similarity=0.232 Sum_probs=74.1
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 473 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl 473 (600)
++-.++-.++.-|+.+....++ +++. +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++|++.+++
T Consensus 12 ~~~~~~k~~Gq~fl~~~~i~~~--i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~ 89 (299)
T 2h1r_A 12 SGRENLYFQGQHLLKNPGILDK--IIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY 89 (299)
T ss_dssp -----------CEECCHHHHHH--HHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred ccccchhccccceecCHHHHHH--HHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 4444444555556555544333 3333 56789999999999999999999989999999999999999999999988
Q ss_pred CCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 474 EKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 474 ~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
.+ ++++++|+.++. ...||.|++|+|+..
T Consensus 90 ~~-v~~~~~D~~~~~--------~~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 90 NN-LEVYEGDAIKTV--------FPKFDVCTANIPYKI 118 (299)
T ss_dssp CC-EEC----CCSSC--------CCCCSEEEEECCGGG
T ss_pred Cc-eEEEECchhhCC--------cccCCEEEEcCCccc
Confidence 64 999999997652 347999999999974
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=117.65 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCC--CeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHH-------HcC-CCCcEEEEEcChHHHHHHHHH
Q 007525 424 FNFK--DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV-------LNK-LEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~g--e~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNak-------lNg-l~nrV~~i~gDare~l~~l~~ 493 (600)
+.+| ++|||+|||+|.+++.+|++|++|+++|++|.+++.+++|++ .|+ +.++++++++|+.+++..+
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-- 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-- 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC--
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC--
Confidence 3567 899999999999999999999899999999988777777654 344 5346999999999987532
Q ss_pred hhcCCcccEEEeCCCcch---HHHHHHHHHHhcC
Q 007525 494 SQKAHKITQVVMNLPNDA---TEFLDAFRGIYRD 524 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~a---~eFLdaa~~lLk~ 524 (600)
...||+|++|||+.. ...+....++++.
T Consensus 162 ---~~~fDvV~lDP~y~~~~~saavkk~~~~lr~ 192 (258)
T 2oyr_A 162 ---TPRPQVVYLDPMFPHKQKSALVKKEMRVFQS 192 (258)
T ss_dssp ---SSCCSEEEECCCCCCCCC-----HHHHHHHH
T ss_pred ---cccCCEEEEcCCCCCcccchHHHHHHHHHHH
Confidence 236999999998742 1233444455543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-10 Score=109.18 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=89.9
Q ss_pred HHHHhc---CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 418 QRLLSG---FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 418 ~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
.++++. +.++.+|||+|||+|.+++.+++.+ ++|+|+|+++.+++.++++++.+++.++++++++|+.++. .
T Consensus 35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~- 110 (267)
T 3kkz_A 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP---F- 110 (267)
T ss_dssp HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---C-
T ss_pred HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC---C-
Confidence 445554 4678999999999999999999986 4999999999999999999999999888999999997753 1
Q ss_pred hhcCCcccEEEeCCCcc---hHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 494 SQKAHKITQVVMNLPND---ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~---a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
+.++||.|+++.+.. ...++..+.++|+++ |++.+.+.
T Consensus 111 --~~~~fD~i~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~ 151 (267)
T 3kkz_A 111 --RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKG--------GYLAVSEC 151 (267)
T ss_dssp --CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEE--------EEEEEEEE
T ss_pred --CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCC--------CEEEEEEe
Confidence 246899999976543 357888889999886 46655554
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-10 Score=112.34 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=92.9
Q ss_pred HHHHhc---CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 418 QRLLSG---FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 418 ~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
.++++. +.++.+|||+|||+|.+++.++++ +++|+|+|+++.+++.+++|++.+++.++++++++|+.+.. +
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~- 181 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP---F- 181 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---C-
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC---C-
Confidence 345554 457899999999999999999998 88999999999999999999999999877999999998652 1
Q ss_pred hhcCCcccEEEeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 494 SQKAHKITQVVMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
..+.||.|+++-.. ....++..+.++|+++ |++.+.++....
T Consensus 182 --~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~~ 226 (312)
T 3vc1_A 182 --DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG--------GRYVTITGCWNP 226 (312)
T ss_dssp --CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE--------EEEEEEEEEECT
T ss_pred --CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC--------cEEEEEEccccc
Confidence 24689999985321 1467899999999986 577777665443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=116.23 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred EecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCc
Q 007525 402 RCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKK 476 (600)
Q Consensus 402 vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nr 476 (600)
++...||+......-...+++. +.++++|||+|||+|.+++.+|+.+ ++|+++|+++.+++.+++|++.+++.+
T Consensus 49 l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~- 127 (317)
T 1dl5_A 49 YDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN- 127 (317)
T ss_dssp EECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-
T ss_pred ccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-
Confidence 4445555654333333445443 5689999999999999999999864 369999999999999999999999987
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
++++++|+.+.+. ..+.||.|+++.+... +.+.+.++|+++
T Consensus 128 v~~~~~d~~~~~~------~~~~fD~Iv~~~~~~~--~~~~~~~~Lkpg 168 (317)
T 1dl5_A 128 VIFVCGDGYYGVP------EFSPYDVIFVTVGVDE--VPETWFTQLKEG 168 (317)
T ss_dssp EEEEESCGGGCCG------GGCCEEEEEECSBBSC--CCHHHHHHEEEE
T ss_pred eEEEECChhhccc------cCCCeEEEEEcCCHHH--HHHHHHHhcCCC
Confidence 9999999987542 1357999999987643 225677888875
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=106.13 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=84.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh------
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS------ 494 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~------ 494 (600)
..++.+|||+|||+|.+++.+|+. +++|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+...
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 457889999999999999999986 57999999999999999999999999878999999999876543210
Q ss_pred ---hc-C-CcccEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 495 ---QK-A-HKITQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ---~~-~-~~fD~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
-. . +.||.|+++.... ...++..+.++++++
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg 174 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG 174 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE
T ss_pred cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 00 1 5799999996543 347889999999986
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=109.43 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=91.0
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +.++.+|||+|||.|.+++.+++. |++|+++|+++.+++.+++++..+++.++++++++|+.++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------- 152 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-------- 152 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--------
Confidence 44544 467899999999999999999987 8999999999999999999999999987799999998764
Q ss_pred cCCcccEEEeC-----CC-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 496 KAHKITQVVMN-----LP-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 496 ~~~~fD~VVmN-----pP-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+.||.|++. .| .....++..+.++++++ |++.+.++...
T Consensus 153 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~ 198 (318)
T 2fk8_A 153 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD--------GRMTVQSSVSY 198 (318)
T ss_dssp -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT--------CEEEEEEEECC
T ss_pred -CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC--------cEEEEEEeccC
Confidence 2579999987 22 33467899999999986 57777776653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-10 Score=107.75 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=88.9
Q ss_pred HHHHhc---CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 418 QRLLSG---FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 418 ~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
.++++. +.++.+|||+|||+|.+++.+++.+ ++|+|+|+++.+++.+++|+..+++.++++++++|+.++. .
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~- 110 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP---F- 110 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS---S-
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC---C-
Confidence 445554 4678899999999999999999985 4999999999999999999999999988999999997652 1
Q ss_pred hhcCCcccEEEeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 494 SQKAHKITQVVMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
..++||+|+++... ....++..+.++|+++ |++.+.+
T Consensus 111 --~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg--------G~l~~~~ 150 (257)
T 3f4k_A 111 --QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKG--------GFIAVSE 150 (257)
T ss_dssp --CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE--------EEEEEEE
T ss_pred --CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCC--------cEEEEEE
Confidence 24689999986433 2457889999999886 4665555
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=106.38 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=80.7
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.+++.+ ++++++|+.+.. +.+.||.|
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-------~~~~~D~i 136 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-------SEPPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-------CCSCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-------ccCCcCEE
Confidence 5789999999999999999986 5799999999999999999999999987 999999998753 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++.......++..+.++++++
T Consensus 137 ~~~~~~~~~~~l~~~~~~L~~g 158 (207)
T 1jsx_A 137 ISRAFASLNDMVSWCHHLPGEQ 158 (207)
T ss_dssp ECSCSSSHHHHHHHHTTSEEEE
T ss_pred EEeccCCHHHHHHHHHHhcCCC
Confidence 9987655667888888888876
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.8e-10 Score=104.86 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=82.9
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+.+.+.++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.++ . +++++++|+.+.. . +.+
T Consensus 31 ~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~d~~~~~---~---~~~ 102 (227)
T 1ve3_A 31 LLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-S-NVEFIVGDARKLS---F---EDK 102 (227)
T ss_dssp HHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-C-CCEEEECCTTSCC---S---CTT
T ss_pred HHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEECchhcCC---C---CCC
Confidence 344556778999999999999999999998899999999999999999999988 3 5999999987742 1 245
Q ss_pred cccEEEeCCC--cc----hHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLP--ND----ATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP--~~----a~eFLdaa~~lLk~~ 525 (600)
+||.|+++.+ .. ...++..+.++++++
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~g 135 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS 135 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCC
Confidence 7999999988 43 246888999999886
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-09 Score=107.88 Aligned_cols=123 Identities=10% Similarity=0.100 Sum_probs=92.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHH--cCC-CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVL--NKL-EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNakl--Ngl-~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+.+|||+|||+|.+++.+++.. .+|+++|+++.+++.+++|+.. +++ ..+++++++|+.+++.. ..++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-----~~~~ 168 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-----NQDA 168 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-----CSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-----CCCC
Confidence 467899999999999999999874 6999999999999999999876 555 45799999999998753 2468
Q ss_pred ccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 500 ITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 500 fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
||+|++|+|.. ..+|+..+.++|+++ |++.+...+.... .+....+.+.+...
T Consensus 169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~~~--~~~~~~~~~~l~~~ 229 (304)
T 2o07_A 169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKED--------GVLCCQGECQWLH--LDLIKEMRQFCQSL 229 (304)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHEEEE--------EEEEEEEECTTTC--HHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC--------eEEEEecCCcccc--hHHHHHHHHHHHHh
Confidence 99999998762 247899999999986 5676665433222 13344454445443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-10 Score=105.23 Aligned_cols=102 Identities=13% Similarity=0.005 Sum_probs=83.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.+++.+ ++++++|+.+... ....||.|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~------~~~~~D~i 147 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHN-VSTRHGDGWQGWQ------ARAPFDAI 147 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG------GGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCc-eEEEECCcccCCc------cCCCccEE
Confidence 5689999999999999999999998999999999999999999999999985 9999999987542 13679999
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+++.... .+.+.+.++++++ |++.+.+-.
T Consensus 148 ~~~~~~~--~~~~~~~~~L~pg--------G~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPP--EIPTALMTQLDEG--------GILVLPVGE 176 (210)
T ss_dssp EESSBCS--SCCTHHHHTEEEE--------EEEEEEECS
T ss_pred EEccchh--hhhHHHHHhcccC--------cEEEEEEcC
Confidence 9975332 1224677888876 466555433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-09 Score=106.69 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +.++.+|||+|||.|.+++.+++ .|++|+|+|+++.+++.+++++..+++.++++++++|+.++
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------- 126 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-------- 126 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--------
Confidence 44444 56789999999999999999994 58899999999999999999999999877799999999754
Q ss_pred cCCcccEEEeCC------CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 496 KAHKITQVVMNL------PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 496 ~~~~fD~VVmNp------P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.+.||.|++.- +.....++..+.++|+++ |++.++++..
T Consensus 127 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~ 171 (287)
T 1kpg_A 127 -DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD--------GVMLLHTITG 171 (287)
T ss_dssp -CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT--------CEEEEEEEEE
T ss_pred -CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC--------CEEEEEEecC
Confidence 25799999862 234568899999999986 4666666554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-09 Score=106.12 Aligned_cols=147 Identities=14% Similarity=0.059 Sum_probs=96.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|||+|||+|+++..+|.. .++|+|+|+++.+++.+.+.++.. . ++.++++|++..... ....+.|
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~-nv~~i~~Da~~~~~~---~~~~~~~ 147 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--P-NIFPLLADARFPQSY---KSVVENV 147 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--T-TEEEEECCTTCGGGT---TTTCCCE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--C-CeEEEEcccccchhh---hccccce
Confidence 568999999999999999999985 359999999999998777766654 3 499999999763210 0013579
Q ss_pred cEEEeCCCcch-HH-HHHHHHHHhcCCCCCCCCCccEEEEEeccC----CCCCchhHHHHHHHHHhhcccceEEEEeEEe
Q 007525 501 TQVVMNLPNDA-TE-FLDAFRGIYRDRPEDAKFTFPKIHLYGFSK----ARDPEFDFHERIRIALVEVAVNVEMRRVRLV 574 (600)
Q Consensus 501 D~VVmNpP~~a-~e-FLdaa~~lLk~~~~~g~~~~p~IHvY~F~k----~~d~~~di~eRI~~~L~~~~~~~~v~~VR~V 574 (600)
|.|++|.+... .+ ++..+.+.|+++ |++-+-+-.. .-++. +..+.+...|.+. ++.+..+.+.
T Consensus 148 D~I~~d~a~~~~~~il~~~~~~~LkpG--------G~lvisik~~~~d~t~~~~-e~~~~~~~~L~~~--gf~~~~~~~l 216 (232)
T 3id6_C 148 DVLYVDIAQPDQTDIAIYNAKFFLKVN--------GDMLLVIKARSIDVTKDPK-EIYKTEVEKLENS--NFETIQIINL 216 (232)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHHEEEE--------EEEEEEEC-------CCSS-SSTTHHHHHHHHT--TEEEEEEEEC
T ss_pred EEEEecCCChhHHHHHHHHHHHhCCCC--------eEEEEEEccCCcccCCCHH-HHHHHHHHHHHHC--CCEEEEEecc
Confidence 99999976532 23 445556689886 4554433221 11121 2223333445432 3566666667
Q ss_pred cCC-CcEEEEEEEe
Q 007525 575 APG-KWMLCASFVL 587 (600)
Q Consensus 575 AP~-K~mycvsFrl 587 (600)
.|. +.|+++..+.
T Consensus 217 ~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 217 DPYDKDHAIVLSKY 230 (232)
T ss_dssp TTTCSSCEEEEEEE
T ss_pred CCCcCceEEEEEEe
Confidence 664 5688887764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-10 Score=118.84 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=79.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+|.+|||+|||+|.+++.||+.|+ +|+|+|.++ +++.++++++.|++.++|+++++|+.++- .++++|+|
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-------lpe~~Dvi 153 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-------LPEQVDAI 153 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSCEEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-------CCccccEE
Confidence 4789999999999999999999985 899999997 78999999999999999999999998862 25689999
Q ss_pred EeCCCcc-------hHHHHHHHHHHhcCC
Q 007525 504 VMNLPND-------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~-------a~eFLdaa~~lLk~~ 525 (600)
|.++-.. ...++.+..++|+++
T Consensus 154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 154 VSEWMGYGLLHESMLSSVLHARTKWLKEG 182 (376)
T ss_dssp ECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred EeecccccccccchhhhHHHHHHhhCCCC
Confidence 9865432 246778888899876
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-10 Score=104.02 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.+++|+. +++++++|+.++ ...||.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~---------~~~~D~ 113 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI---------SGKYDT 113 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC---------CCCEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC---------CCCeeE
Confidence 44788999999999999999999875 89999999999999999986 389999999874 257999
Q ss_pred EEeCCCcch------HHHHHHHHHHh
Q 007525 503 VVMNLPNDA------TEFLDAFRGIY 522 (600)
Q Consensus 503 VVmNpP~~a------~eFLdaa~~lL 522 (600)
|++|||... ..++..+.+++
T Consensus 114 v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 114 WIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp EEECCCC-------CHHHHHHHHHHE
T ss_pred EEECCCchhccCchhHHHHHHHHHhc
Confidence 999999532 35777777765
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=108.29 Aligned_cols=105 Identities=10% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH------cCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL------NKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl------Ngl~nrV~~i~gDare~l~~l~~~~ 495 (600)
..++.+|||+|||+|.+++.+|+. +..|+|+|+++.+++.+++|++. +++.| +.++++|+.+.+...+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v~~~~~d~~~~l~~~~--- 119 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACLRSNAMKHLPNFF--- 119 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-EEEEECCTTTCHHHHC---
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-EEEEECcHHHhhhhhC---
Confidence 456789999999999999999987 46999999999999999999875 56665 9999999988655433
Q ss_pred cCCcccEEEeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 496 KAHKITQVVMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
..+.+|.|+++.|.. ...++..+.++|+++ |.+++-+
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG--------G~l~~~t 168 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG--------GLVYTIT 168 (235)
T ss_dssp CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC--------CEEEEEe
Confidence 246899999876532 136999999999986 5676643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=110.84 Aligned_cols=104 Identities=8% Similarity=-0.015 Sum_probs=86.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++++..++...+++++++|+.++. +...||.|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-------PTELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-------CSSCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-------CCCCeeEEEE
Confidence 345999999999999999999888999999999999999999988766557999999998753 2458999997
Q ss_pred CC------CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 506 NL------PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 506 Np------P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.. |.....++..+.++|+++ |++.+.+|...
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~ 175 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPD--------GELITLMYPIT 175 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEE--------EEEEEEECCCS
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCC--------cEEEEEEeccc
Confidence 53 224467899999999986 57777777654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-09 Score=106.97 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHH--cCC-CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVL--NKL-EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNakl--Ngl-~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+.+|||+|||.|.++..+++. + .+|+++|++|.+++.+++|+.. +++ ..+++++.+|+++++.. ..++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-----~~~~ 148 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-----SENQ 148 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-----CCSC
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-----CCCC
Confidence 45789999999999999999987 4 6999999999999999999864 345 34799999999998753 2468
Q ss_pred ccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 500 ITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 500 fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
||+|++|+|.. ..+|+..+.++|+++ |++-+...
T Consensus 149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg--------G~lv~~~~ 190 (275)
T 1iy9_A 149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED--------GIFVAQTD 190 (275)
T ss_dssp EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE--------EEEEEECC
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEEcC
Confidence 99999999763 368999999999986 56666543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=115.38 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=76.3
Q ss_pred eEEEEEeccEEEEEecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHH
Q 007525 389 LVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 389 ~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~e 466 (600)
..|...++|++.+-.++.-|..+....+ ++++. +.++++|||+|||+|.++..+++++.+|+|+|+++.+++.+++
T Consensus 13 ~~~~~~~~~~~~~k~~GQnfL~d~~i~~--~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~ 90 (295)
T 3gru_A 13 GLVPRGSHMFKPKKKLGQCFLIDKNFVN--KAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANK 90 (295)
T ss_dssp -----------------CCEECCHHHHH--HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHH
T ss_pred hhchhHhcCCCCccccCccccCCHHHHH--HHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 3455667788887777775665554433 44443 5688999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 467 NSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 467 NaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
++. +.. +++++++|+.++-- +...||.|++|+|+..
T Consensus 91 ~~~--~~~-~v~vi~gD~l~~~~------~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 91 LKE--LYN-NIEIIWGDALKVDL------NKLDFNKVVANLPYQI 126 (295)
T ss_dssp HHH--HCS-SEEEEESCTTTSCG------GGSCCSEEEEECCGGG
T ss_pred Hhc--cCC-CeEEEECchhhCCc------ccCCccEEEEeCcccc
Confidence 987 334 49999999987521 1246999999999863
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=110.65 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=83.7
Q ss_pred cCCCCCeEEEEeeechHHH-HHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 423 GFNFKDVVCDVFAGVGPIC-IPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~Fa-IpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.+++|++|||+|||+|+++ +.+|+ .|++|+|+|+||++++.+++|++..++ ++++++++|+.++. ...|
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--------d~~F 189 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--------GLEF 189 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--------GCCC
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--------CCCc
Confidence 4789999999999999876 55666 478999999999999999999999999 57999999998852 3679
Q ss_pred cEEEeCCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 501 TQVVMNLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 501 D~VVmNpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|+|+++--. ...++++++.+.++++ |++.+-.
T Consensus 190 DvV~~~a~~~d~~~~l~el~r~LkPG--------G~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAALAEPKRRVFRNIHRYVDTE--------TRIIYRT 222 (298)
T ss_dssp SEEEECTTCSCHHHHHHHHHHHCCTT--------CEEEEEE
T ss_pred CEEEECCCccCHHHHHHHHHHHcCCC--------cEEEEEc
Confidence 999986432 2357899999999987 4666654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=106.26 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=83.5
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..+++. +.++.+|||+|||+|.+++.+|+. +++|+|+|+++.+++.++++++.+++.++++++++|+.+..
T Consensus 26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 99 (256)
T 1nkv_A 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV------ 99 (256)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC------
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC------
Confidence 344443 568899999999999999999986 67999999999999999999999999767999999998753
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
..+.||.|++.... ....+|..+.++|+++
T Consensus 100 -~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg 133 (256)
T 1nkv_A 100 -ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG 133 (256)
T ss_dssp -CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred -cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC
Confidence 13679999974321 2357889999999886
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=116.76 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=81.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|++|||+|||.|.+++.+|..+ ++|+|+|+++.+++.+++|++.+++. ++++++|+.+....+ ....||
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~----~~~~fD 317 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWC----GEQQFD 317 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHH----TTCCEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhc----ccCCCC
Confidence 5789999999999999999999864 69999999999999999999999984 789999998875322 236799
Q ss_pred EEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
.|++|||.++ .++|..+.++++++
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG 367 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 367 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999853 36678888888875
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=102.81 Aligned_cols=109 Identities=13% Similarity=0.025 Sum_probs=88.1
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.++..+.++ +|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++++..+++ ++.++++|+.+.. . +.+
T Consensus 23 ~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~---~~~ 93 (202)
T 2kw5_A 23 SVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD---I---VAD 93 (202)
T ss_dssp HHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS---C---CTT
T ss_pred HHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC---C---CcC
Confidence 344556777 999999999999999999999999999999999999999999887 4999999987752 1 246
Q ss_pred cccEEEeCCCcc----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 499 KITQVVMNLPND----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 499 ~fD~VVmNpP~~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.||.|++..... ...++..+.++++++ |++.+.++...
T Consensus 94 ~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~ 135 (202)
T 2kw5_A 94 AWEGIVSIFCHLPSSLRQQLYPKVYQGLKPG--------GVFILEGFAPE 135 (202)
T ss_dssp TCSEEEEECCCCCHHHHHHHHHHHHTTCCSS--------EEEEEEEECTT
T ss_pred CccEEEEEhhcCCHHHHHHHHHHHHHhcCCC--------cEEEEEEeccc
Confidence 799999875433 346788888888876 57777776543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.7e-10 Score=104.98 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=90.1
Q ss_pred HhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC----CcEEEEEcChHHHHHHHHHhhc
Q 007525 421 LSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE----KKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 421 v~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~----nrV~~i~gDare~l~~l~~~~~ 496 (600)
...+.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++++..+++. +++.++++|+.+.. . .
T Consensus 25 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~---~ 98 (235)
T 3sm3_A 25 HNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---F---H 98 (235)
T ss_dssp HHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC---S---C
T ss_pred HHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC---C---C
Confidence 344678999999999999999999999999999999999999999999988873 35899999997652 1 2
Q ss_pred CCcccEEEeCCCcc-------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 497 AHKITQVVMNLPND-------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 497 ~~~fD~VVmNpP~~-------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+.||.|+++.... ...++..+.++|+++ |++.+.++...
T Consensus 99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~ 145 (235)
T 3sm3_A 99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG--------AYLYLVEFGQN 145 (235)
T ss_dssp TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE--------EEEEEEEEBCC
T ss_pred CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC--------eEEEEEECCcc
Confidence 46899999865331 227899999999986 67877777654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.5e-09 Score=104.93 Aligned_cols=103 Identities=9% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHH--cCC-CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVL--NKL-EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNakl--Ngl-~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+.+|||+|||.|.+++.+++. + .+|+++|+++.+++.+++|+.. +++ ..+++++++|+.+++.. ..++
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-----~~~~ 163 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-----FKNE 163 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-----CSSC
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-----CCCC
Confidence 45689999999999999999997 3 6999999999999999999865 445 34699999999987642 2467
Q ss_pred ccEEEeCCCcc---------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 500 ITQVVMNLPND---------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 500 fD~VVmNpP~~---------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
||+|++|+|.. ..+|+..+.++|+++ |++-+..
T Consensus 164 fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~ 205 (296)
T 1inl_A 164 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED--------GVFSAET 205 (296)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred ceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCC--------cEEEEEc
Confidence 99999998653 268999999999986 5666553
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-09 Score=108.57 Aligned_cols=124 Identities=11% Similarity=0.067 Sum_probs=92.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH--cCC-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL--NKL-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl--Ngl-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
...+.+|||+|||.|.+++.+++. +.+|+++|++|.+++.+++|+.. +++ ..+++++++|+.+++.. ..+
T Consensus 114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~-----~~~ 188 (321)
T 2pt6_A 114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-----VTN 188 (321)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-----CCS
T ss_pred CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh-----cCC
Confidence 346789999999999999999987 46999999999999999999876 445 34699999999998753 246
Q ss_pred cccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 499 KITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 499 ~fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
+||+|++|++.. ..+|+..+.++|+++ |++-+..-+...+ .+...++.+.+.+.
T Consensus 189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~~~--~~~~~~~~~~l~~~ 250 (321)
T 2pt6_A 189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN--------GYCVAQCESLWIH--VGTIKNMIGYAKKL 250 (321)
T ss_dssp CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEE--------EEEEEEECCTTTC--HHHHHHHHHHHHTT
T ss_pred CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEEcCCcccC--HHHHHHHHHHHHHH
Confidence 799999998421 168999999999986 5666554333222 12334444455443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.4e-10 Score=118.97 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=81.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|.+++.+|.. + ++|+|+|+++.+++.+++|++.+|+.+ ++++++|+.++... + ..+.|
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~-~---~~~~f 331 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEI-I---GEEVA 331 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSS-S---CSSCE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchh-h---ccCCC
Confidence 678999999999999999999984 4 699999999999999999999999986 99999999875311 1 12579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|+|.++ .++|..+.++++++
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999853 35678888888875
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=109.05 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=88.6
Q ss_pred cCCCCCeEEEEeeechHHHHHHhh--C-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAK--I-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAk--k-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+.++.+|||+|||+|.+++.+|. . +++|+|+|+++.+++.+++|+..+++.++++++++|+.+.. ..+.
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~ 187 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-------TREG 187 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-------CCSC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-------ccCC
Confidence 378899999999999999999862 2 56999999999999999999999999888999999998853 1368
Q ss_pred ccEEEeCCCcc-------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPND-------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~~-------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
||.|+++.+.. ...++..+.++|+++ |++.+.++..
T Consensus 188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~ 230 (305)
T 3ocj_A 188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPG--------GALVTSFLTP 230 (305)
T ss_dssp EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEE--------EEEEEECCCC
T ss_pred eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCC--------eEEEEEecCC
Confidence 99999977542 124899999999986 5777777654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.7e-10 Score=109.22 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=88.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHc-C-CCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLN-K-LEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklN-g-l~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.+ + +.++++++++|+.+.. . ...
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~---~---~~~ 170 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE---L---PDG 170 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC---C---CTT
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC---C---CCC
Confidence 678999999999999999999985 579999999999999999999988 5 4445999999998752 1 135
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.||.|++|+|. ..+++..+.++++++ |++.+++...
T Consensus 171 ~~D~v~~~~~~-~~~~l~~~~~~L~pg--------G~l~~~~~~~ 206 (280)
T 1i9g_A 171 SVDRAVLDMLA-PWEVLDAVSRLLVAG--------GVLMVYVATV 206 (280)
T ss_dssp CEEEEEEESSC-GGGGHHHHHHHEEEE--------EEEEEEESSH
T ss_pred ceeEEEECCcC-HHHHHHHHHHhCCCC--------CEEEEEeCCH
Confidence 79999999885 347889999999986 6888877543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=113.61 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=81.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++.+|||+|||+|.+++.+|+.|. +|+|+|+++ +++.+++|++.|++.++++++++|+.++. + +.++||.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~---~~~~fD~ 136 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE---L---PVEKVDI 136 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC---C---SSSCEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc---C---CCCceEE
Confidence 45789999999999999999999975 999999995 99999999999999988999999998862 1 2468999
Q ss_pred EEeCCCc-------chHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN-------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~-------~a~eFLdaa~~lLk~~ 525 (600)
|+++++. ....++.++.++|+++
T Consensus 137 Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg 166 (349)
T 3q7e_A 137 IISEWMGYCLFYESMLNTVLHARDKWLAPD 166 (349)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred EEEccccccccCchhHHHHHHHHHHhCCCC
Confidence 9998752 2346888889999986
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=106.72 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=86.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.++..+++.|.+|+|+|+++.+++.+++++..+++..+++++++|+.+.... ..++||.|+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~fD~v~ 141 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-----LETPVDLIL 141 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-----CSSCEEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-----cCCCceEEE
Confidence 357799999999999999999999999999999999999999999999966799999999886421 257899999
Q ss_pred eCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 505 MNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 505 mNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
++-.. ....++..+.++|+++ |++.+..+
T Consensus 142 ~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~ 174 (285)
T 4htf_A 142 FHAVLEWVADPRSVLQTLWSVLRPG--------GVLSLMFY 174 (285)
T ss_dssp EESCGGGCSCHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred ECchhhcccCHHHHHHHHHHHcCCC--------eEEEEEEe
Confidence 86433 2357999999999986 46665554
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=102.13 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=84.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++ +|||+|||+|.++..+++. +.+|+++|+++.+++.++++++.+++.++++++++|+.+.. + +.++||+|
T Consensus 43 ~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~---~~~~~D~v 115 (219)
T 3dlc_A 43 TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP---I---EDNYADLI 115 (219)
T ss_dssp CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS---S---CTTCEEEE
T ss_pred CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC---C---CcccccEE
Confidence 444 9999999999999999997 67999999999999999999999999877999999998742 1 24689999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+++... ....++..+.++|+++ |++.+.+
T Consensus 116 ~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~ 148 (219)
T 3dlc_A 116 VSRGSVFFWEDVATAFREIYRILKSG--------GKTYIGG 148 (219)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred EECchHhhccCHHHHHHHHHHhCCCC--------CEEEEEe
Confidence 997643 2367899999999986 5666654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-09 Score=99.75 Aligned_cols=148 Identities=16% Similarity=0.056 Sum_probs=101.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..++ +++++++|+.+.. +.++||.|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-------~~~~fD~v 118 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-------TAELFDLI 118 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-------CSCCEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-------CCCCccEE
Confidence 3467899999999999999999998899999999999999999987654 5999999998764 25789999
Q ss_pred EeCCCc-------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC----CCchhHHHHHHHHHhhcccceEEEEeE
Q 007525 504 VMNLPN-------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR----DPEFDFHERIRIALVEVAVNVEMRRVR 572 (600)
Q Consensus 504 VmNpP~-------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~----d~~~di~eRI~~~L~~~~~~~~v~~VR 572 (600)
+++... ....++..+.++++++ |++.+-+..... ... ...+.+...+......++...++
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~ 189 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPG--------GHLVFGSARDATCRRWGHV-AGAETVITILTEALTEVERVQCQ 189 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEE--------EEEEEEEECHHHHHHTTCS-CCHHHHHHHHHHHSEEEEEEEEE
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCC--------CEEEEEecCCCcchhhhhh-hhHHHHHHHHHhhccceEEEecc
Confidence 997422 2246789999999986 466654432210 000 11222322332222223323344
Q ss_pred EecCCCcEEEEEEEeccc
Q 007525 573 LVAPGKWMLCASFVLPES 590 (600)
Q Consensus 573 ~VAP~K~mycvsFrlp~~ 590 (600)
...+....+...|+.|..
T Consensus 190 ~~~~~~d~~l~~~~~~~~ 207 (216)
T 3ofk_A 190 GQSADEDCLLARFRNPER 207 (216)
T ss_dssp CSSTTCEEEEEEEECCC-
T ss_pred CCccccchhHHHHhCCcc
Confidence 455777777777877754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-09 Score=107.03 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeC-cHHHHHHHHHHH-----HHcCCC----CcEEEEEcChHHHHHHHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDL-NPYAVDYLERNS-----VLNKLE----KKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDi-NP~Ave~l~eNa-----klNgl~----nrV~~i~gDare~l~~l~~ 493 (600)
.++.+|||+|||+|.+++.+++.|. +|+|+|+ ++.+++.+++|+ +.|++. +++++...|..+....+..
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 5788999999999999999999886 9999999 899999999999 555554 3588887665432222211
Q ss_pred hhcCCcccEEEe-CCCcc---hHHHHHHHHHHhc
Q 007525 494 SQKAHKITQVVM-NLPND---ATEFLDAFRGIYR 523 (600)
Q Consensus 494 ~~~~~~fD~VVm-NpP~~---a~eFLdaa~~lLk 523 (600)
.-....||+|++ |.++. ...++..+.++++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA 191 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence 001467999997 77654 3578899999998
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=112.56 Aligned_cols=128 Identities=19% Similarity=0.159 Sum_probs=96.5
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN 471 (600)
.+..+...+..|.+ +++......+++.+ ..+.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|+..|
T Consensus 165 ~~~~~~~~~gvf~~-~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~ 243 (343)
T 2pjd_A 165 DGLTVKTLPGVFSR-DGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN 243 (343)
T ss_dssp TTEEEEECTTCTTS-SSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT
T ss_pred cceEEEecCCccCC-CCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 56666666554443 33322233455443 357799999999999999999875 59999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------HHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
++. ++++.+|+.++. .++||.|++|||... ..++..+.++|+++ |.+.+.+..
T Consensus 244 ~~~--~~~~~~d~~~~~--------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~ 305 (343)
T 2pjd_A 244 GVE--GEVFASNVFSEV--------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG--------GELRIVANA 305 (343)
T ss_dssp TCC--CEEEECSTTTTC--------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE--------EEEEEEEET
T ss_pred CCC--CEEEEccccccc--------cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC--------cEEEEEEcC
Confidence 986 577899987653 357999999999752 46788888888876 566665543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=111.83 Aligned_cols=95 Identities=21% Similarity=0.119 Sum_probs=80.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++.+|||+|||+|.+++.+|+.|. +|+|+|+++ +++.+++|++.|++.++++++++|+.++. + +.++||.
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~---~~~~~D~ 134 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH---L---PVEKVDV 134 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC---C---SCSCEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc---C---CCCcEEE
Confidence 56789999999999999999999875 999999997 99999999999999777999999998752 1 2368999
Q ss_pred EEeCC-Ccc------hHHHHHHHHHHhcCC
Q 007525 503 VVMNL-PND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNp-P~~------a~eFLdaa~~lLk~~ 525 (600)
|++++ +.. ...++.++.++|+++
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 164 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLYAKNKYLAKG 164 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHHhhcCCC
Confidence 99887 221 246888889999986
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-09 Score=104.32 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=80.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHc--CC--------CCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLN--KL--------EKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklN--gl--------~nrV~~i~gDare~l~~l~ 492 (600)
...+.+|||+|||.|.+++.+++.+ .+|+++|++|.+++.+++|+ .. ++ ..+++++++|+.+++..
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-- 149 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-- 149 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--
Confidence 3567899999999999999999885 59999999999999999998 33 33 34699999999988753
Q ss_pred HhhcCCcccEEEeCCCcc--------hHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVMNLPND--------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~--------a~eFLdaa~~lLk~~ 525 (600)
.++||.|++|+|.. ..+|+..+.++|+++
T Consensus 150 ----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg 186 (281)
T 1mjf_A 150 ----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP 186 (281)
T ss_dssp ----CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred ----cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 35799999999842 368999999999986
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=101.82 Aligned_cols=108 Identities=10% Similarity=0.023 Sum_probs=84.6
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCC-------CEEEEEeCcHHHHHHHHHHHHHcCC----CCcEEEEEcChHHHHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIV-------KRVYANDLNPYAVDYLERNSVLNKL----EKKIEVFNMDGRRFIDAM 491 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg-------~~V~AvDiNP~Ave~l~eNaklNgl----~nrV~~i~gDare~l~~l 491 (600)
.+.++.+|||+|||+|.+++.+++.+ ++|+++|+++.+++.+++|++.+++ .++++++++|+.+.....
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 46789999999999999999999864 3999999999999999999999983 235999999998753110
Q ss_pred HHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 492 FASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 492 ~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.. ....||.|+++.+.. .+++.+.++++++ |++.+.+..
T Consensus 157 ~~--~~~~fD~I~~~~~~~--~~~~~~~~~Lkpg--------G~lv~~~~~ 195 (227)
T 2pbf_A 157 KK--ELGLFDAIHVGASAS--ELPEILVDLLAEN--------GKLIIPIEE 195 (227)
T ss_dssp HH--HHCCEEEEEECSBBS--SCCHHHHHHEEEE--------EEEEEEEEE
T ss_pred Cc--cCCCcCEEEECCchH--HHHHHHHHhcCCC--------cEEEEEEcc
Confidence 00 135799999998764 3567888899886 466665543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-09 Score=112.00 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=81.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+|+.|. +|+|+|++ .+++.+++|++.|++.++++++++|+.++. ..++||+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~D~ 132 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-------LPEKVDV 132 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-------CSSCEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-------cCCcceE
Confidence 46789999999999999999999986 99999999 999999999999999988999999998763 1368999
Q ss_pred EEeCCCc-c------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN-D------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~-~------a~eFLdaa~~lLk~~ 525 (600)
|++++.. . ...++.++.++|+++
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkpg 162 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPT 162 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCC
Confidence 9998732 1 235788888999986
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=103.70 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=88.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||.|.+++.+++.+.+|+++|+++.+++.+++++..+++.+ ++++++|+.+.. + ..+.||.|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---~---~~~~fD~v 91 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLP---F---PDDSFDII 91 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCC---S---CTTCEEEE
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccccCC---C---CCCcEEEE
Confidence 6789999999999999999999998899999999999999999999999885 999999997642 1 24689999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++... ....++..+.++++++ |++.+.++..
T Consensus 92 ~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~ 127 (239)
T 1xxl_A 92 TCRYAAHHFSDVRKAVREVARVLKQD--------GRFLLVDHYA 127 (239)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEECB
T ss_pred EECCchhhccCHHHHHHHHHHHcCCC--------cEEEEEEcCC
Confidence 987432 2457899999999986 5777766654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=97.62 Aligned_cols=91 Identities=15% Similarity=0.026 Sum_probs=75.8
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+.++.+|||+|||.|.++..+++.+.+|+++|+++.+++.+++|+ . ++.++++|+.+.. . +.+.||.
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-----~-~~~~~~~d~~~~~---~---~~~~~D~ 110 (195)
T 3cgg_A 43 MAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF-----P-EARWVVGDLSVDQ---I---SETDFDL 110 (195)
T ss_dssp HSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTTSC---C---CCCCEEE
T ss_pred hccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-----C-CCcEEEcccccCC---C---CCCceeE
Confidence 4678999999999999999999999999999999999999999886 2 3789999987742 1 2467999
Q ss_pred EEeCCCcc-------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND-------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~-------a~eFLdaa~~lLk~~ 525 (600)
|+++++.. ...++..+.++++++
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 140 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGAD 140 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCCC
Confidence 99985421 257889999999876
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=103.87 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=86.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.+++.+ +.++++|+.+.. + +.+.||.|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~l~---~---~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMP---F---TDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCC---S---CTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEecHHhCC---C---CCCCEEEE
Confidence 4678999999999999999999998899999999999999999999999885 999999997742 1 24689999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++... ....++..+.++|+++ |++.+.++..
T Consensus 108 ~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~l~~~~~~~ 143 (260)
T 1vl5_A 108 TCRIAAHHFPNPASFVSEAYRVLKKG--------GQLLLVDNSA 143 (260)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEB
T ss_pred EEhhhhHhcCCHHHHHHHHHHHcCCC--------CEEEEEEcCC
Confidence 987432 2357899999999986 5777665543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=109.01 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=89.1
Q ss_pred HHHHHHHHhcC-CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC--CcEEEEEcChHHHHHH
Q 007525 414 ATERQRLLSGF-NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE--KKIEVFNMDGRRFIDA 490 (600)
Q Consensus 414 ~tEr~Riv~~l-~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~--nrV~~i~gDare~l~~ 490 (600)
..+...+++.+ .++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++++..+++. .+++++++|+.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-- 146 (299)
T 3g2m_A 69 TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-- 146 (299)
T ss_dssp HHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC--
T ss_pred cHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC--
Confidence 33444555543 34559999999999999999999999999999999999999999988752 45999999998753
Q ss_pred HHHhhcCCcccEEEeC-------CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 491 MFASQKAHKITQVVMN-------LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 491 l~~~~~~~~fD~VVmN-------pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..+.||.|++. +|.....++..+.++|+++ |++.+..+..
T Consensus 147 -----~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~ 193 (299)
T 3g2m_A 147 -----LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPG--------GKFLLSLAMS 193 (299)
T ss_dssp -----CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEE--------EEEEEEEECC
T ss_pred -----cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCC--------cEEEEEeecC
Confidence 14689998864 1112367899999999986 5666666554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-08 Score=105.14 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=93.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH-cC--C-CCcEEEEEcChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL-NK--L-EKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl-Ng--l-~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
...+.+|||+|||.|.++..+++. +.+|+++|+++.+++.+++|+.. |+ + ..+++++++|+.+++.. ..
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-----~~ 149 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-----TE 149 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-----CC
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-----cC
Confidence 356789999999999999999987 46999999999999999999864 32 3 34699999999998753 24
Q ss_pred CcccEEEeCCCcc-----------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC-CCCchhHHHHHHHHHhhc
Q 007525 498 HKITQVVMNLPND-----------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA-RDPEFDFHERIRIALVEV 562 (600)
Q Consensus 498 ~~fD~VVmNpP~~-----------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~-~d~~~di~eRI~~~L~~~ 562 (600)
++||+|++|++.. ..+|+..+.++|+++ |++-+...+.. .+ .+...++.+.+.+.
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~~~~--~~~~~~~~~~l~~~ 216 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG--------GVMGMQTGMILLTH--HRVHPVVHRTVREA 216 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE--------EEEEEEEEEECC-----CHHHHHHHHHHTT
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCC--------cEEEEEccCccccC--HHHHHHHHHHHHHH
Confidence 6899999998753 268999999999986 56666554432 11 13444555555543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=121.49 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=85.7
Q ss_pred EEEEeccEEEEEecCee------e---ecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC---------
Q 007525 391 TMLLFHHLSLFRCFDTI------Y---WNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV--------- 448 (600)
Q Consensus 391 t~vkEnG~~F~vD~~kf------y---~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg--------- 448 (600)
+.+.++.+.+.+|.+.- | ....-..|. ..++.. ..++..|+|+|||+|+|+|.||..+
T Consensus 142 v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R 221 (703)
T 3v97_A 142 VWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHR 221 (703)
T ss_dssp EEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTC
T ss_pred EEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCc
Confidence 34556778888886631 1 111112233 223333 4678899999999999999999753
Q ss_pred -----------------------------------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 449 -----------------------------------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 449 -----------------------------------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
..|+|+|+++.|++.++.|++.+|+.+.+++.++|+.++...
T Consensus 222 ~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~--- 298 (703)
T 3v97_A 222 GRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP--- 298 (703)
T ss_dssp CCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS---
T ss_pred cccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc---
Confidence 479999999999999999999999998899999999885310
Q ss_pred hhcCCcccEEEeCCCcc
Q 007525 494 SQKAHKITQVVMNLPND 510 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~ 510 (600)
...+.+|+||+|||+.
T Consensus 299 -~~~~~~d~Iv~NPPYG 314 (703)
T 3v97_A 299 -LPKGPYGTVLSNPPYG 314 (703)
T ss_dssp -CTTCCCCEEEECCCCC
T ss_pred -cccCCCCEEEeCCCcc
Confidence 0012799999999985
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-10 Score=106.98 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=80.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc------------CCCCcEEEEEcChHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN------------KLEKKIEVFNMDGRRFIDAM 491 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN------------gl~nrV~~i~gDare~l~~l 491 (600)
+.++.+|||+|||+|.+++.+|++|++|+|+|+++.|++.+++++..+ +.. +++++++|+.+.....
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP-GIEIWCGDFFALTARD 98 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS-SSEEEEECCSSSTHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC-ccEEEECccccCCccc
Confidence 467899999999999999999999999999999999999999886542 122 4899999998764210
Q ss_pred HHhhcCCcccEEEeCC-----Cc-chHHHHHHHHHHhcCCCCCCCCCccE--EEEEecc
Q 007525 492 FASQKAHKITQVVMNL-----PN-DATEFLDAFRGIYRDRPEDAKFTFPK--IHLYGFS 542 (600)
Q Consensus 492 ~~~~~~~~fD~VVmNp-----P~-~a~eFLdaa~~lLk~~~~~g~~~~p~--IHvY~F~ 542 (600)
.++||.|++.- |. ....++..+.++|+++ |+ +.++.|.
T Consensus 99 -----~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg--------G~~~l~~~~~~ 144 (203)
T 1pjz_A 99 -----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA--------CSGLLITLEYD 144 (203)
T ss_dssp -----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE--------EEEEEEEESSC
T ss_pred -----CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEEecC
Confidence 14799998632 21 2246889999999986 45 5555554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=111.61 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=71.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|.. ..+|+|+|+++.+++.+++|++.+++.+ ++++++|+.++..... ....|
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~---~~~~f 175 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDP---RYHEV 175 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCG---GGTTE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCcccc---ccCCC
Confidence 578999999999999999999974 3699999999999999999999999986 9999999987642100 01469
Q ss_pred cEEEeCCCcch
Q 007525 501 TQVVMNLPNDA 511 (600)
Q Consensus 501 D~VVmNpP~~a 511 (600)
|.|++|||.++
T Consensus 176 D~Vl~D~PcSg 186 (309)
T 2b9e_A 176 HYILLDPSCSG 186 (309)
T ss_dssp EEEEECCCCCC
T ss_pred CEEEEcCCcCC
Confidence 99999999853
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=104.91 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=90.7
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +.++.+|||+|||+|.+++.+++. +++|+++|+++.+++.+++++..+++.+++.++++|+.+.. +
T Consensus 52 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--- 125 (273)
T 3bus_A 52 EMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP---F--- 125 (273)
T ss_dssp HHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---S---
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC---C---
Confidence 44443 468899999999999999999985 78999999999999999999999999878999999997742 1
Q ss_pred cCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 496 KAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 496 ~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+.++||.|++.... ....++..+.++++++ |++.+.++...
T Consensus 126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~~ 170 (273)
T 3bus_A 126 EDASFDAVWALESLHHMPDRGRALREMARVLRPG--------GTVAIADFVLL 170 (273)
T ss_dssp CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE--------EEEEEEEEEES
T ss_pred CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC--------eEEEEEEeecc
Confidence 24689999975432 2357889999999886 57777776543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=105.62 Aligned_cols=106 Identities=11% Similarity=-0.009 Sum_probs=88.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++.+|||+|||+|.+++.+++. +++|+++|+++.+++.++++++.+++.++++++++|+.+.. + +.++||.
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~---~~~~fD~ 153 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP---C---EDNSYDF 153 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS---S---CTTCEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC---C---CCCCEeE
Confidence 367899999999999999999987 88999999999999999999999999777999999998742 1 2467999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++.-.. ....++..+.++|+++ |++.+.++..
T Consensus 154 v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~ 190 (297)
T 2o57_A 154 IWSQDAFLHSPDKLKVFQECARVLKPR--------GVMAITDPMK 190 (297)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred EEecchhhhcCCHHHHHHHHHHHcCCC--------eEEEEEEecc
Confidence 9985332 2468899999999986 5666666544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=101.29 Aligned_cols=108 Identities=12% Similarity=0.033 Sum_probs=86.9
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.+.+.+.++.+|||+|||.|.+++.+++.+. +|+|+|+++.+++.+++|+.. .. +++++++|+.+.. + ..
T Consensus 35 ~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~-~i~~~~~d~~~~~---~---~~ 105 (215)
T 2pxx_A 35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VP-QLRWETMDVRKLD---F---PS 105 (215)
T ss_dssp HHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CT-TCEEEECCTTSCC---S---CS
T ss_pred HHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CC-CcEEEEcchhcCC---C---CC
Confidence 3445578899999999999999999999876 899999999999999999864 23 5899999997752 1 24
Q ss_pred CcccEEEeCCCcc-------------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 498 HKITQVVMNLPND-------------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 498 ~~fD~VVmNpP~~-------------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+.||.|+++.+.. ...++..+.++++++ |++.+.++..
T Consensus 106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~li~~~~~~ 162 (215)
T 2pxx_A 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG--------GRFISMTSAA 162 (215)
T ss_dssp SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE--------EEEEEEESCC
T ss_pred CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC--------CEEEEEeCCC
Confidence 6799999876541 257889999999886 6788877754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=111.10 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHH-------cCCC---CcEEEEEcChHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVL-------NKLE---KKIEVFNMDGRRFIDA 490 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNakl-------Ngl~---nrV~~i~gDare~l~~ 490 (600)
+.+|.+|||+|||+|.+++.+|+. | .+|+|+|+++.+++.+++|++. |++. ++++++++|+.+....
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 678999999999999999999986 4 7999999999999999999984 5542 4699999999876422
Q ss_pred HHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
+. ...||+|++|+|.. ..++..+.++|+++ |++.++..
T Consensus 183 ~~----~~~fD~V~~~~~~~-~~~l~~~~~~Lkpg--------G~lv~~~~ 220 (336)
T 2b25_A 183 IK----SLTFDAVALDMLNP-HVTLPVFYPHLKHG--------GVCAVYVV 220 (336)
T ss_dssp ---------EEEEEECSSST-TTTHHHHGGGEEEE--------EEEEEEES
T ss_pred cC----CCCeeEEEECCCCH-HHHHHHHHHhcCCC--------cEEEEEeC
Confidence 11 34699999998764 34788899999886 57777765
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=117.85 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=77.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.+|+.+ .+|+|+|+++ +++.+++|++.|++.++|+++++|+.++. ..++||+|
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-------~~~~fD~I 228 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-------LPEQVDII 228 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSCEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-------cCCCeEEE
Confidence 468899999999999999999986 4999999999 99999999999999778999999998742 13579999
Q ss_pred EeCCCcc------hHHHHHHHHHHhcCC
Q 007525 504 VMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
+++++.. ..+.+..+.++|+++
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~Lkpg 256 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPS 256 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEE
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCC
Confidence 9999832 234555566777765
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-09 Score=104.74 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=87.7
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
.++++. +.++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.+++++..+ .+++++++|+.+.. .
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~---~-- 116 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE---F-- 116 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCC---C--
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCC---C--
Confidence 445554 567889999999999999999997 889999999999999999987765 35999999998752 1
Q ss_pred hcCCcccEEEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 495 QKAHKITQVVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 495 ~~~~~fD~VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+.++||.|+++.. .....++..+.++++++ |++.+.++...
T Consensus 117 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~ 163 (266)
T 3ujc_A 117 -PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT--------GTLLITDYCAT 163 (266)
T ss_dssp -CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEES
T ss_pred -CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC--------CEEEEEEeccC
Confidence 2468999998643 23357889999999986 57777766544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=95.23 Aligned_cols=103 Identities=13% Similarity=-0.040 Sum_probs=83.1
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.+++..+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++ ++.++++|+.+.. ..
T Consensus 35 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-------~~ 100 (211)
T 3e23_A 35 TKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-------AI 100 (211)
T ss_dssp HHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-------CC
T ss_pred HHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-------CC
Confidence 456666788999999999999999999999999999999999999999997 2567889987653 25
Q ss_pred CcccEEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 498 HKITQVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 498 ~~fD~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+.||.|+++... ....++..+.++++++ |++.+....
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~ 143 (211)
T 3e23_A 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPG--------GLFYASYKS 143 (211)
T ss_dssp SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEC
T ss_pred CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCC--------cEEEEEEcC
Confidence 789999997533 2347889999999986 455555443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-09 Score=98.26 Aligned_cols=147 Identities=11% Similarity=0.008 Sum_probs=101.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||.|.++..+++.+.+|+|+|+++.+++.+++++. .+++++++|+.++.. .+.||.|
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~-------~~~fD~v 110 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV-------PTSIDTI 110 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC-------CSCCSEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC-------CCCeEEE
Confidence 3478899999999999999999999999999999999999999865 348899999987531 2689999
Q ss_pred EeCCCcc----h--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCc-hhHHHH------------HH-------H
Q 007525 504 VMNLPND----A--TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPE-FDFHER------------IR-------I 557 (600)
Q Consensus 504 VmNpP~~----a--~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~-~di~eR------------I~-------~ 557 (600)
+++.... . ..+|..+.++++++ |++.+.+........ ...... .. .
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKG--------GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIP 182 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTT--------CEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCC--------CEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHH
Confidence 9975432 1 24899999999986 466665543222110 000000 00 1
Q ss_pred HHhhcccceEEEEeEEecCCCcEEEEEEEecccc
Q 007525 558 ALVEVAVNVEMRRVRLVAPGKWMLCASFVLPESV 591 (600)
Q Consensus 558 ~L~~~~~~~~v~~VR~VAP~K~mycvsFrlp~~v 591 (600)
.+...++..++. |..+....+++.+..+.+..+
T Consensus 183 ~~~~~l~~aGf~-v~~~~~~~~~w~~~~~~~~~~ 215 (220)
T 3hnr_A 183 VMQTIFENNGFH-VTFTRLNHFVWVMEATKQLEH 215 (220)
T ss_dssp HHHHHHHHTTEE-EEEEECSSSEEEEEEEECSCC
T ss_pred HHHHHHHHCCCE-EEEeeccceEEEEeehhhhhh
Confidence 122223344553 555666689999998887654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-09 Score=105.75 Aligned_cols=96 Identities=6% Similarity=-0.092 Sum_probs=81.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..+|.+|||+|||+|.++..+++.. .+|+++|++|.+++.++++++.++. ++.++.+|+.+.+..+ +...||.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~----~~~~FD~ 131 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL----PDGHFDG 131 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS----CTTCEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccc----cccCCce
Confidence 4678999999999999999999874 6999999999999999999998876 4889999998876432 3568999
Q ss_pred EEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
|++|.... ...++.++.++||++
T Consensus 132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG 163 (236)
T 3orh_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred EEEeeeecccchhhhcchhhhhhhhhheeCCC
Confidence 99987542 236889999999987
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-09 Score=109.63 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=80.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+|+.|. +|+|+|++ .+++.+++|++.|++.++++++++|+.+.. . +.++||+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~---~~~~~D~ 108 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH---L---PFPKVDI 108 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC---C---SSSCEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc---C---CCCcccE
Confidence 45788999999999999999999875 99999999 599999999999999888999999998752 1 2368999
Q ss_pred EEeCCCcc-------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND-------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~-------a~eFLdaa~~lLk~~ 525 (600)
|+++++.. ...++.++.++|+++
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCC
Confidence 99997642 246788888999986
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=104.97 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhh---CCCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAK---IVKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAk---kg~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..++.+|||+|||+|.+++.+++ .+++|+|+|+++.+++.++++++.+ +...+++++++|+.++..........++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 35789999999999999999994 5689999999999999999999987 5555699999999875310000000168
Q ss_pred ccEEEeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 500 ITQVVMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 500 fD~VVmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
||+|+++... ....++..+.++|+++ |++.++++.
T Consensus 114 fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~ 151 (299)
T 3g5t_A 114 IDMITAVECAHWFDFEKFQRSAYANLRKD--------GTIAIWGYA 151 (299)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred eeEEeHhhHHHHhCHHHHHHHHHHhcCCC--------cEEEEEecC
Confidence 9999987543 2357899999999986 577666554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=109.09 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++ +++|+|+|+++.|++.+++|++.++ . +++++++|+.++...+... ....||
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~-~v~~v~~d~~~l~~~l~~~-g~~~~D 100 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-D-RVSLFKVSYREADFLLKTL-GIEKVD 100 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-T-TEEEEECCGGGHHHHHHHT-TCSCEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-C-cEEEEECCHHHHHHHHHhc-CCCCCC
Confidence 567899999999999999999987 4799999999999999999999988 4 6999999988764322110 114799
Q ss_pred EEEeCCCcchHH
Q 007525 502 QVVMNLPNDATE 513 (600)
Q Consensus 502 ~VVmNpP~~a~e 513 (600)
.|++|||.+...
T Consensus 101 ~Vl~D~gvSs~q 112 (301)
T 1m6y_A 101 GILMDLGVSTYQ 112 (301)
T ss_dssp EEEEECSCCHHH
T ss_pred EEEEcCccchhh
Confidence 999999987643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-09 Score=107.00 Aligned_cols=80 Identities=25% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..+++.++++++++|+.++. ...||.|
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~--------~~~fD~v 97 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD--------LPFFDTC 97 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC--------CCCCSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc--------chhhcEE
Confidence 56789999999999999999999999999999999999999999988887556999999997652 2369999
Q ss_pred EeCCCcch
Q 007525 504 VMNLPNDA 511 (600)
Q Consensus 504 VmNpP~~a 511 (600)
++|+|+..
T Consensus 98 v~nlpy~~ 105 (285)
T 1zq9_A 98 VANLPYQI 105 (285)
T ss_dssp EEECCGGG
T ss_pred EEecCccc
Confidence 99999964
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-09 Score=113.15 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHH-------HHcCCC-CcEEEEEcChHH
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNS-------VLNKLE-KKIEVFNMDGRR 486 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNa-------klNgl~-nrV~~i~gDare 486 (600)
++++. +.+|++|||+|||+|.+++.+|+. ++ +|+|+|+++.+++.+++|+ +.+|+. ++|+++++|+.+
T Consensus 164 ~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~ 243 (438)
T 3uwp_A 164 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 243 (438)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence 34443 678999999999999999999964 65 6999999999999999875 456773 579999999987
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcch---HHHHHHHHHHhcCC
Q 007525 487 FIDAMFASQKAHKITQVVMNLPNDA---TEFLDAFRGIYRDR 525 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~a---~eFLdaa~~lLk~~ 525 (600)
..-.. ....+|+|++|++.+. ...|.+..+.|+++
T Consensus 244 lp~~d----~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG 281 (438)
T 3uwp_A 244 EEWRE----RIANTSVIFVNNFAFGPEVDHQLKERFANMKEG 281 (438)
T ss_dssp HHHHH----HHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTT
T ss_pred Ccccc----ccCCccEEEEcccccCchHHHHHHHHHHcCCCC
Confidence 53210 0125999999988654 34556666777765
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-09 Score=100.56 Aligned_cols=95 Identities=9% Similarity=0.018 Sum_probs=78.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCC----cEEEEEcChHHHHHHHHHhhcCC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEK----KIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~n----rV~~i~gDare~l~~l~~~~~~~ 498 (600)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++|+..+++.+ +++++++|+..... ..+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~ 101 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK------RFH 101 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG------GGC
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc------cCC
Confidence 478899999999999999999975 599999999999999999999998874 69999999853311 236
Q ss_pred cccEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
+||.|+++-.. ....++..+.++++++
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (217)
T 3jwh_A 102 GYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK 134 (217)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred CcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 79999986432 1257888888888876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-09 Score=109.31 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=78.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+|+.|. +|+|+|+++ +++.++++++.|++.++++++++|+.+.. ..++||+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~~D~ 119 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-------LPEQVDI 119 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSCEEE
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-------CCCceeE
Confidence 35789999999999999999999875 999999997 78999999999999777999999998752 1357999
Q ss_pred EEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
|+++++.. ..+.+..+.++|+++
T Consensus 120 Ivs~~~~~~~~~~~~~~~l~~~~~~Lkpg 148 (348)
T 2y1w_A 120 IISEPMGYMLFNERMLESYLHAKKYLKPS 148 (348)
T ss_dssp EEECCCBTTBTTTSHHHHHHHGGGGEEEE
T ss_pred EEEeCchhcCChHHHHHHHHHHHhhcCCC
Confidence 99997642 345666777888875
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-09 Score=111.72 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=84.0
Q ss_pred eecChhHHHH-HHHHhc---CCCCCeEEEEeeechHHHHHHhhCC-------CEEEEEeCcHHHHHHHHHHHHHcCCCCc
Q 007525 408 YWNSKLATER-QRLLSG---FNFKDVVCDVFAGVGPICIPAAKIV-------KRVYANDLNPYAVDYLERNSVLNKLEKK 476 (600)
Q Consensus 408 y~n~Rl~tEr-~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkkg-------~~V~AvDiNP~Ave~l~eNaklNgl~nr 476 (600)
|+.++...+- ..++.. ..++.+|||+|||+|.|++.+++.. ..|+|+|+++.+++.++.|+..+++ +
T Consensus 108 ~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~ 185 (344)
T 2f8l_A 108 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--K 185 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--C
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--C
Confidence 4566644332 233332 2357899999999999999998753 6899999999999999999999998 3
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch----------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA----------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a----------------------~eFLdaa~~lLk~~ 525 (600)
+.++++|+.... ....||.|++|||... ..|+..+.+.++++
T Consensus 186 ~~i~~~D~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g 249 (344)
T 2f8l_A 186 MTLLHQDGLANL-------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG 249 (344)
T ss_dssp CEEEESCTTSCC-------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred ceEEECCCCCcc-------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC
Confidence 799999986532 2467999999999421 25888888988875
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-09 Score=101.33 Aligned_cols=105 Identities=6% Similarity=-0.071 Sum_probs=82.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.++++++.++. +++++++|+.+.+..+ ..++||.
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~----~~~~fD~ 131 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL----PDGHFDG 131 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS----CTTCEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCC--CeEEEecCHHHhhccc----CCCceEE
Confidence 46788999999999999999988764 999999999999999999988773 5999999998864211 2468999
Q ss_pred EEeC-C----Ccc----hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 503 VVMN-L----PND----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 503 VVmN-p----P~~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|++| . +.. ...++..+.++|+++ |++.+.++.
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg--------G~l~~~~~~ 172 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG--------GVLTYCNLT 172 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE--------EEEEECCHH
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCC--------eEEEEEecC
Confidence 9992 1 111 125688999999986 566655543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-09 Score=104.36 Aligned_cols=102 Identities=11% Similarity=-0.012 Sum_probs=84.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.+++++..++. +++++++|+.++. ..++|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-------~~~~f 90 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE-------LNDKY 90 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC-------CSSCE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC-------cCCCe
Confidence 567899999999999999999987 57999999999999999999988776 5999999998753 13589
Q ss_pred cEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.|+++... ....++..+.++|+++ |++-+.+..
T Consensus 91 D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~ 128 (284)
T 3gu3_A 91 DIAICHAFLLHMTTPETMLQKMIHSVKKG--------GKIICFEPH 128 (284)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHTEEEE--------EEEEEEECC
T ss_pred eEEEECChhhcCCCHHHHHHHHHHHcCCC--------CEEEEEecc
Confidence 999987642 2357899999999986 566655543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-09 Score=99.87 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCC----CCcEEEEEcChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKL----EKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl----~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+.++.+|||+|||+|.+++.+++. + .+|+++|+++.+++.+++|+..+++ .++++++++|+.+... .
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~ 148 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E 148 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc------c
Confidence 668999999999999999999986 3 5999999999999999999999875 3359999999975421 1
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||.|+++.+.. .+++.+.++++++
T Consensus 149 ~~~fD~i~~~~~~~--~~~~~~~~~Lkpg 175 (226)
T 1i1n_A 149 EAPYDAIHVGAAAP--VVPQALIDQLKPG 175 (226)
T ss_dssp GCCEEEEEECSBBS--SCCHHHHHTEEEE
T ss_pred CCCcCEEEECCchH--HHHHHHHHhcCCC
Confidence 35799999998763 3567888899886
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=105.33 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=81.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHc--CC-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLN--KL-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklN--gl-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
...+.+|||+|||.|.+++.+++. +.+|+++|+++.+++.+++|+... ++ ..+++++++|+.+++... ..+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~----~~~ 193 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA----AEG 193 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS----CTT
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc----cCC
Confidence 356789999999999999999987 369999999999999999998763 55 346999999999987531 135
Q ss_pred cccEEEeCCCc--c------hHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN--D------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~--~------a~eFLdaa~~lLk~~ 525 (600)
+||+|++|++. . ..+|+..+.++|+++
T Consensus 194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg 228 (334)
T 1xj5_A 194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG 228 (334)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC
Confidence 79999999863 1 368999999999986
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8e-09 Score=97.36 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=82.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++ ++..+ ++++++|+.+.. ..++||.
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~~-~~~~~~d~~~~~-------~~~~~D~ 110 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLDN-VEFRQQDLFDWT-------PDRQWDA 110 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCTT-EEEEECCTTSCC-------CSSCEEE
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCCC-eEEEecccccCC-------CCCceeE
Confidence 36678899999999999999999999999999999999999988 56654 999999998762 3578999
Q ss_pred EEeCCCcc------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 503 VVMNLPND------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 503 VVmNpP~~------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|+++-... ...++..+.++++++ |++.+.++..
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~ 149 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPG--------GVVEFVDVTD 149 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEECC
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCC--------eEEEEEeCCC
Confidence 99864321 257889999999986 4666665544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=97.62 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=86.6
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHH-HHhhcC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAM-FASQKA 497 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l-~~~~~~ 497 (600)
++...+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++. .. +++++++|+.+..... +. ..
T Consensus 49 ~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---~~-~~~~~~~d~~~~~~~~~~~--~~ 122 (245)
T 3ggd_A 49 RFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---AA-NISYRLLDGLVPEQAAQIH--SE 122 (245)
T ss_dssp HHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---CT-TEEEEECCTTCHHHHHHHH--HH
T ss_pred HHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---cc-CceEEECcccccccccccc--cc
Confidence 344446788999999999999999999998899999999999999999872 22 4999999998764321 11 01
Q ss_pred CcccEEEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 498 HKITQVVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 498 ~~fD~VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
..||.|+++.. .....++..+.++|+++ |++.+.++...
T Consensus 123 ~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~ 167 (245)
T 3ggd_A 123 IGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQ--------GAMYLIELGTG 167 (245)
T ss_dssp HCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTT--------CEEEEEEECTT
T ss_pred cCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCC--------CEEEEEeCCcc
Confidence 24899988632 23468999999999986 57788887654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=98.38 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++..++ +++++++|+.+.. ..+.||
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-------~~~~fD 111 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYD-------FEEKYD 111 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCC-------CCSCEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccC-------CCCCce
Confidence 357889999999999999999997 6799999999999999999987666 4999999998753 136899
Q ss_pred EEEeCCCcc------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMNLPND------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmNpP~~------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|+++.... ..+++..+.++|+++ |++.+.++....
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~~ 153 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKES--------GIFINADLVHGE 153 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEECBCS
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCC--------cEEEEEEecCCC
Confidence 999976432 125899999999986 678877776543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-09 Score=104.92 Aligned_cols=96 Identities=13% Similarity=0.033 Sum_probs=75.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH----------cC------CCCcEEEEEcChHHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL----------NK------LEKKIEVFNMDGRRFI 488 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl----------Ng------l~nrV~~i~gDare~l 488 (600)
.++.+|||+|||.|.+++.+|+.|.+|+|+|+++.+++.++++... ++ ...+++++++|+.+..
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 5788999999999999999999999999999999999999876532 11 1235999999998864
Q ss_pred HHHHHhhcCCcccEEEeC------CCcchHHHHHHHHHHhcCC
Q 007525 489 DAMFASQKAHKITQVVMN------LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 489 ~~l~~~~~~~~fD~VVmN------pP~~a~eFLdaa~~lLk~~ 525 (600)
.. ..++||.|+.. ++.....++..+.++|+++
T Consensus 147 ~~-----~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG 184 (252)
T 2gb4_A 147 RA-----NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE 184 (252)
T ss_dssp GG-----CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred cc-----cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 21 12689999854 2223457899999999986
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=104.00 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=83.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHc--CC-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLN--KL-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklN--gl-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
...+.+|||+|||.|.+++.+++. +.+|+++|++|.+++.+++|+..+ ++ ..+++++.+|+.+++.. ..+
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-----~~~ 180 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-----HKN 180 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-----CTT
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-----cCC
Confidence 346689999999999999999987 369999999999999999998754 44 44799999999998753 246
Q ss_pred cccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+||+|++|++.. ..+|+..+.++|+++ |++-+..
T Consensus 181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg--------G~lv~~~ 222 (314)
T 2b2c_A 181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKED--------GILSSQG 222 (314)
T ss_dssp CEEEEEECCC-------------HHHHHHHHEEEE--------EEEEEEC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC--------eEEEEEC
Confidence 899999998542 158899999999986 5666654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=98.10 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=81.5
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
..+.+.+.++.+|||+|||+|.+++.+++. .+|+++|+++.+++.+++++..++. +++++++|+.+.. ..
T Consensus 25 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~ 94 (243)
T 3d2l_A 25 AWVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQDMRELE-------LP 94 (243)
T ss_dssp HHHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCGGGCC-------CS
T ss_pred HHHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCC--ceEEEEcChhhcC-------CC
Confidence 456666788899999999999999999998 8999999999999999999998873 4899999998752 13
Q ss_pred CcccEEEeCC-C-------cchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNL-P-------NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNp-P-------~~a~eFLdaa~~lLk~~ 525 (600)
..||.|+++. . .....++..+.++++++
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 130 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDG 130 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence 6799999864 1 12346888999999886
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=96.35 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=82.3
Q ss_pred HhcCCCCCeEEEEeeechHHHH-HHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 421 LSGFNFKDVVCDVFAGVGPICI-PAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 421 v~~l~~ge~VLDlfAGvG~FaI-paAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+....++.+|||+|||.|.+++ .++..+.+|+|+|+++.+++.+++++..++. ++.++++|+.+.. . +.++
T Consensus 18 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~---~~~~ 89 (209)
T 2p8j_A 18 CNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLP---F---KDES 89 (209)
T ss_dssp HHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCC---S---CTTC
T ss_pred HhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCC---C---CCCc
Confidence 3346678999999999999854 4455678999999999999999999988774 4889999997642 1 2467
Q ss_pred ccEEEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
||.|++... .....++..+.++++++ |++.+.++..
T Consensus 90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~ 131 (209)
T 2p8j_A 90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG--------GLACINFLTT 131 (209)
T ss_dssp EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEET
T ss_pred eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEecc
Confidence 999998633 22357889999999986 4666666554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=99.60 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=77.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++|+..+++ +++++++|+.+.. ....||.|+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~-------~~~~fD~v~ 110 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA-------FKNEFDAVT 110 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC-------CCSCEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc-------cCCCccEEE
Confidence 4678999999999999999999999999999999999999999998887 3899999998753 135799999
Q ss_pred eCC---Cc----chHHHHHHHHHHhcCC
Q 007525 505 MNL---PN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNp---P~----~a~eFLdaa~~lLk~~ 525 (600)
+.. +. ....++..+.++|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg 138 (252)
T 1wzn_A 111 MFFSTIMYFDEEDLRKLFSKVAEALKPG 138 (252)
T ss_dssp ECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EcCCchhcCCHHHHHHHHHHHHHHcCCC
Confidence 753 22 2347888999999886
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-09 Score=107.45 Aligned_cols=100 Identities=12% Similarity=0.015 Sum_probs=75.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCC----------------------------
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLE---------------------------- 474 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~---------------------------- 474 (600)
.++.+|||+|||+|.+++.+|+. +.+|+|+|+++.+++.+++|++.++..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 36889999999999999999987 579999999999999999998876533
Q ss_pred -----------------------------CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc----------chHHHH
Q 007525 475 -----------------------------KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN----------DATEFL 515 (600)
Q Consensus 475 -----------------------------nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~----------~a~eFL 515 (600)
++|+++++|+......+.. .....||+|++.-.. ....++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~-~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE-AQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT-TCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCcccccc-ccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 4699999998754322211 125689999987653 234688
Q ss_pred HHHHHHhcCC
Q 007525 516 DAFRGIYRDR 525 (600)
Q Consensus 516 daa~~lLk~~ 525 (600)
..+.++|+++
T Consensus 204 ~~~~~~LkpG 213 (292)
T 3g07_A 204 RRIYRHLRPG 213 (292)
T ss_dssp HHHHHHEEEE
T ss_pred HHHHHHhCCC
Confidence 8899999986
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.2e-09 Score=98.12 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=82.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|+..+++.+ ++++++|+...+. ....|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~------~~~~f 147 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYE------PLAPY 147 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCG------GGCCE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCC------CCCCe
Confidence 5688999999999999999999874 799999999999999999999999886 9999999865432 13579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|+++.+... +.+.+.++++++ |++.+.+.
T Consensus 148 D~v~~~~~~~~--~~~~~~~~L~pg--------G~lv~~~~ 178 (215)
T 2yxe_A 148 DRIYTTAAGPK--IPEPLIRQLKDG--------GKLLMPVG 178 (215)
T ss_dssp EEEEESSBBSS--CCHHHHHTEEEE--------EEEEEEES
T ss_pred eEEEECCchHH--HHHHHHHHcCCC--------cEEEEEEC
Confidence 99999876532 336788888876 46665543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.5e-09 Score=101.34 Aligned_cols=102 Identities=12% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++..+++.+ ++++++|+.+... ..++||
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~------~~~~fD 107 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPF------EDSSFD 107 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCS------CTTCEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCC------CCCCee
Confidence 568999999999999999999987 5799999999999999999999999985 9999999987531 246899
Q ss_pred EEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 502 QVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 502 ~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.|+++... ....++..+.++|+++ |++.+.+
T Consensus 108 ~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~ 142 (276)
T 3mgg_A 108 HIFVCFVLEHLQSPEEALKSLKKVLKPG--------GTITVIE 142 (276)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred EEEEechhhhcCCHHHHHHHHHHHcCCC--------cEEEEEE
Confidence 99986533 2357899999999986 5666654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-08 Score=101.74 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=82.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH---cCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL---NKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl---Ngl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
..++.+|||+|||.|.++..+++. +.+|+++|+++.+++.+++++.. +....+++++.+|+.+++... ..+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~----~~~ 168 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT----PDN 168 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS----CTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc----cCC
Confidence 356789999999999999999987 36999999999999999999742 222346999999999886421 146
Q ss_pred cccEEEeCCCcch--------HHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVMNLPNDA--------TEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVmNpP~~a--------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+||+|++|++... .+|+..+.++|+++ |++-+..
T Consensus 169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~ 210 (304)
T 3bwc_A 169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD--------GICCNQG 210 (304)
T ss_dssp CEEEEEEECC---------CCHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC--------cEEEEec
Confidence 8999999986432 58999999999986 5666554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=100.31 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=73.1
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+...+.+.++|||+|||+|++|++++.. +.+|+|+|+|+.+++.+++|+..||+.+++++ +|..+.. +
T Consensus 42 ~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~-------~ 112 (200)
T 3fzg_A 42 YVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV-------Y 112 (200)
T ss_dssp HHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH-------T
T ss_pred HHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC-------C
Confidence 34445678899999999999999999876 46999999999999999999999999866776 5654432 3
Q ss_pred CCcccEEEeCCCcch-H---HHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDA-T---EFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a-~---eFLdaa~~lLk~~ 525 (600)
.+.||+|++.---.- . ..+..+...++++
T Consensus 113 ~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pg 145 (200)
T 3fzg_A 113 KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQ 145 (200)
T ss_dssp TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEE
T ss_pred CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCC
Confidence 578999987532111 1 1233566666654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=97.60 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=76.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|+..++ +++++++|+.+.+. ..+.||.|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~------~~~~fD~v 138 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------EEKPYDRV 138 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------GGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccc------cCCCccEE
Confidence 5678999999999999999999988999999999999999999998877 49999999987321 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++.+... +.+.+.++++++
T Consensus 139 ~~~~~~~~--~~~~~~~~L~pg 158 (231)
T 1vbf_A 139 VVWATAPT--LLCKPYEQLKEG 158 (231)
T ss_dssp EESSBBSS--CCHHHHHTEEEE
T ss_pred EECCcHHH--HHHHHHHHcCCC
Confidence 99876532 335778888876
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-09 Score=104.74 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=69.3
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-HHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-DAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l-~~l~~~~ 495 (600)
++++. +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++|+.. .. +++++++|+.++- ..+.
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~-~v~~i~~D~~~~~~~~~~--- 93 (255)
T 3tqs_A 20 KIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QK-NITIYQNDALQFDFSSVK--- 93 (255)
T ss_dssp HHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CT-TEEEEESCTTTCCGGGSC---
T ss_pred HHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CC-CcEEEEcchHhCCHHHhc---
Confidence 44443 56889999999999999999999999999999999999999999865 33 5999999998862 1110
Q ss_pred cCCcccEEEeCCCcch
Q 007525 496 KAHKITQVVMNLPNDA 511 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a 511 (600)
....+| ||.|||+..
T Consensus 94 ~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 94 TDKPLR-VVGNLPYNI 108 (255)
T ss_dssp CSSCEE-EEEECCHHH
T ss_pred cCCCeE-EEecCCccc
Confidence 024577 999999963
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-09 Score=111.45 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=85.8
Q ss_pred eecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC---------------CCEEEEEeCcHHHHHHHHHHHHH
Q 007525 408 YWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI---------------VKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---------------g~~V~AvDiNP~Ave~l~eNakl 470 (600)
|+.|+...+. +++. ..++.+|+|++||+|.|.+.+++. +..++|+|+|+.+++.++.|+.+
T Consensus 153 fyTP~~v~~~--mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l 230 (445)
T 2okc_A 153 YFTPRPLIQA--MVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 230 (445)
T ss_dssp GCCCHHHHHH--HHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHH--HHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence 5566644432 3333 356789999999999999999864 35799999999999999999999
Q ss_pred cCCCC-cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------------HHHHHHHHHHhcCC
Q 007525 471 NKLEK-KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 471 Ngl~n-rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------------~eFLdaa~~lLk~~ 525 (600)
+++.. .+.+.++|+.... ...+||.|++|||... ..|+..+.+.|+++
T Consensus 231 ~g~~~~~~~i~~gD~l~~~-------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g 300 (445)
T 2okc_A 231 HGIGTDRSPIVCEDSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 300 (445)
T ss_dssp TTCCSSCCSEEECCTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred hCCCcCCCCEeeCCCCCCc-------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC
Confidence 99862 4788999987642 1347999999999853 37899999999876
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.4e-08 Score=93.02 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-----HHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-----DAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l-----~~l~~~~~~~ 498 (600)
+.+|.+|||+|||+|.++..+|+++++|+|+|++|.+ .+. +++++++|+.+.. ...+.....+
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EIA-GVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CCT-TCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cCC-CeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 6789999999999999999999998899999999852 244 4899999986531 1111100013
Q ss_pred cccEEEeCCCcc---------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 499 KITQVVMNLPND---------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 499 ~fD~VVmNpP~~---------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+||+|+.|++.. ....+..+.++|+++ |++-+-.|...
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG--------G~lv~k~~~~~ 143 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG--------GNVLLKQFQGD 143 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEEECST
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC--------CEEEEEEcCCC
Confidence 899999997542 124577788899886 57777777553
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.5e-08 Score=98.04 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
...+.+|||+|||.|.++..+++.. .+|+++|++|.+++.+++++..++ + ..+++++++|+.+++.. ..+
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-----~~~ 150 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-----VTN 150 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-----CCS
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-----CCC
Confidence 3467899999999999999999873 699999999999999999986543 2 34699999999998753 246
Q ss_pred cccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+||+|++|++.. ..+|+..+.++|+++ |++-+..
T Consensus 151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg--------G~lv~~~ 192 (283)
T 2i7c_A 151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN--------GYCVAQC 192 (283)
T ss_dssp CEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEEC
Confidence 899999987531 158999999999986 5666554
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.9e-09 Score=101.88 Aligned_cols=97 Identities=11% Similarity=-0.028 Sum_probs=81.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.+++++..+++..++.++++|+.+... . ..+.||.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~--~~~~fD~ 136 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM---D--LGKEFDV 136 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC---C--CSSCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc---C--CCCCcCE
Confidence 67899999999999999999998875 9999999999999999999999886679999999987521 0 1467999
Q ss_pred EEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
|+++... ....++..+.++|+++
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 167 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPG 167 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 9986432 2357888999999886
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.7e-08 Score=90.81 Aligned_cols=137 Identities=11% Similarity=-0.016 Sum_probs=96.6
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
+.+|||+|||+|.++..+++.|.+|+|+|+++.+++.++++ .. +++++++|+.++. . ..+.||.|+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~---~---~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT-----HP-SVTFHHGTITDLS---D---SPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH-----CT-TSEEECCCGGGGG---G---SCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh-----CC-CCeEEeCcccccc---c---CCCCeEEEEeh
Confidence 88999999999999999999999999999999999999987 23 4899999998753 1 25789999985
Q ss_pred CC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCc---------hhHHHHHHHHHhhcccceEEEEe
Q 007525 507 LP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPE---------FDFHERIRIALVEVAVNVEMRRV 571 (600)
Q Consensus 507 pP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~---------~di~eRI~~~L~~~~~~~~v~~V 571 (600)
.. .....++..+.++++++ |++.+.++....... .--.+.+.+.+... ++.+..+
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gf~~~~~ 179 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDG--------GGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETA--GFQVTSS 179 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEE--------EEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHT--TEEEEEE
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCC--------cEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHC--CCcEEEE
Confidence 32 23468899999999986 567666665432100 00123333334332 3555556
Q ss_pred EEecCCCcEEEEEEE
Q 007525 572 RLVAPGKWMLCASFV 586 (600)
Q Consensus 572 R~VAP~K~mycvsFr 586 (600)
..+.+ ..|-++...
T Consensus 180 ~~~~~-~p~~~l~~~ 193 (203)
T 3h2b_A 180 HWDPR-FPHAYLTAE 193 (203)
T ss_dssp EECTT-SSEEEEEEE
T ss_pred EecCC-Ccchhhhhh
Confidence 66666 556555444
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=97.58 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=80.5
Q ss_pred HHHHHhcCC--CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 417 RQRLLSGFN--FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 417 r~Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
...+.+.+. ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++++. ..+++++++|+.++. .
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~---~- 104 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA---I- 104 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC---C-
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC---C-
Confidence 345555544 789999999999999999999987 99999999999999999876 335999999997652 1
Q ss_pred hhcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 494 SQKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+.+.||.|+++... ....++..+.++|+++
T Consensus 105 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (253)
T 3g5l_A 105 --EPDAYNVVLSSLALHYIASFDDICKKVYINLKSS 138 (253)
T ss_dssp --CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred --CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCC
Confidence 24689999986543 2467899999999986
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=97.68 Aligned_cols=107 Identities=8% Similarity=0.025 Sum_probs=85.1
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+...+.++.+|||+|||+|.++..+++.+++|+|+|+++.+++.+++++ ...+++++++|+.+.. . +.+
T Consensus 46 ~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~---~---~~~ 115 (242)
T 3l8d_A 46 FFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP---F---ENE 115 (242)
T ss_dssp HHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS---S---CTT
T ss_pred HHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC---C---CCC
Confidence 34445778999999999999999999999999999999999999999875 2235999999998752 1 246
Q ss_pred cccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 499 KITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 499 ~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+||.|++.... ....++..+.++++++ |++.+..+..
T Consensus 116 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~ 156 (242)
T 3l8d_A 116 QFEAIMAINSLEWTEEPLRALNEIKRVLKSD--------GYACIAILGP 156 (242)
T ss_dssp CEEEEEEESCTTSSSCHHHHHHHHHHHEEEE--------EEEEEEEECT
T ss_pred CccEEEEcChHhhccCHHHHHHHHHHHhCCC--------eEEEEEEcCC
Confidence 89999985432 2457899999999986 5676666554
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-08 Score=98.78 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=79.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC---CcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE---KKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~---nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++|+..++.. .++.+..+|+.+....+. ..++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~fD 132 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP---AGDGFD 132 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC---CTTCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc---cCCCeE
Confidence 56789999999999999999999999999999999999999998665432 248899999988753321 246899
Q ss_pred EEEeC-CC-----c------chHHHHHHHHHHhcCC
Q 007525 502 QVVMN-LP-----N------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmN-pP-----~------~a~eFLdaa~~lLk~~ 525 (600)
.|++. .. . ....++..+.++|+++
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence 99985 11 1 1457899999999986
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-09 Score=100.68 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=81.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|++.+++.+ ++++++|+...+. ....||.
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~------~~~~fD~ 161 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGFP------PKAPYDV 161 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG------GGCCEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcccCCC------CCCCccE
Confidence 5688999999999999999999986 899999999999999999999999987 9999999833221 1235999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 503 VVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 503 VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|+++.+.. .+.+.+.++++++ |++.+-+.
T Consensus 162 Ii~~~~~~--~~~~~~~~~L~pg--------G~lvi~~~ 190 (235)
T 1jg1_A 162 IIVTAGAP--KIPEPLIEQLKIG--------GKLIIPVG 190 (235)
T ss_dssp EEECSBBS--SCCHHHHHTEEEE--------EEEEEEEC
T ss_pred EEECCcHH--HHHHHHHHhcCCC--------cEEEEEEe
Confidence 99987643 2335778888876 46655543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=96.58 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=77.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCC----cEEEEEcChHHHHHHHHHhhcCC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEK----KIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~n----rV~~i~gDare~l~~l~~~~~~~ 498 (600)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..+++.+ +++++++|+..... ..+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~ 101 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK------RFS 101 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG------GGT
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc------ccC
Confidence 568899999999999999999986 699999999999999999999998864 69999999854321 236
Q ss_pred cccEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
+||.|++.-.- ....++..+.++++++
T Consensus 102 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 102 GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp TCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred CCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence 79999975322 1247888888888875
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=101.58 Aligned_cols=99 Identities=11% Similarity=-0.017 Sum_probs=71.4
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
..+++. +.++.+|||+|||+|.+++.+|++|++|+|+|+|+.+++.+++|+..+.+ .+.+...+.. ... .
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~-~~~-----~ 106 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAE-IPK-----E 106 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSC-CCG-----G
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccc-ccc-----c
Confidence 344444 56889999999999999999999999999999999999999999876622 1233222220 000 0
Q ss_pred cCCcccEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
..+.||.|+++..- .....+..+.+++ ++
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG 141 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS 141 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC
Confidence 13579999998542 2345778888888 76
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-09 Score=106.36 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=79.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHH----HHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAV----DYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Av----e~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
..++++|||+|||+|.+++.+|+. +..|+|+|+++.++ +.++++++.+++.+ +.++++|+.++... ..
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~-----~~ 95 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPFE-----LK 95 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCGG-----GT
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhh-----cc
Confidence 467899999999999999999953 57999999995554 45599999999986 99999999876321 12
Q ss_pred CcccEEEeCCCcch---------HHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 498 HKITQVVMNLPNDA---------TEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 498 ~~fD~VVmNpP~~a---------~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
..+|.|.+++|... .+++.++.++|+++ |++.+
T Consensus 96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG--------G~l~i 137 (225)
T 3p2e_A 96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKE--------AHFEF 137 (225)
T ss_dssp TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEE--------EEEEE
T ss_pred CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCC--------cEEEE
Confidence 56888999987532 35788899999986 56666
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=98.92 Aligned_cols=116 Identities=10% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHH------HHHHHHHHHHHcCCCCcEEEEEcC-hH
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPY------AVDYLERNSVLNKLEKKIEVFNMD-GR 485 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~------Ave~l~eNaklNgl~nrV~~i~gD-ar 485 (600)
.++++. +.++.+|||+|||.|.+++.+++. | ++|+++|+++. +++.++++++.+++.++++++++| ..
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 345543 578999999999999999999987 4 79999999997 999999999999986679999998 22
Q ss_pred HHHHHHHHhhcCCcccEEEeCCCcc----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 486 RFIDAMFASQKAHKITQVVMNLPND----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 486 e~l~~l~~~~~~~~fD~VVmNpP~~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
..... + +.++||.|+++.+.. ...++..+..+++++ |++.+.++....
T Consensus 113 ~~~~~-~---~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~g--------G~l~~~~~~~~~ 164 (275)
T 3bkx_A 113 DDLGP-I---ADQHFDRVVLAHSLWYFASANALALLFKNMAAVC--------DHVDVAEWSMQP 164 (275)
T ss_dssp TCCGG-G---TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTC--------SEEEEEEECSSC
T ss_pred hccCC-C---CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCC--------CEEEEEEecCCC
Confidence 11000 1 246899999876532 234666666665544 578888877643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=98.66 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++++ .++.. ++.++++|+.+.. + +.+.||+|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~-~~~~~~~d~~~~~---~---~~~~fD~v 108 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDR-KVQVVQADARAIP---L---PDESVHGV 108 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCT-TEEEEESCTTSCC---S---CTTCEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCC-ceEEEEcccccCC---C---CCCCeeEE
Confidence 578899999999999999999999999999999999999999998 34344 5999999997642 1 24679999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+++... ....++..+.++++++
T Consensus 109 ~~~~~l~~~~~~~~~l~~~~~~L~pg 134 (263)
T 2yqz_A 109 IVVHLWHLVPDWPKVLAEAIRVLKPG 134 (263)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEEEE
T ss_pred EECCchhhcCCHHHHHHHHHHHCCCC
Confidence 986542 2357899999999986
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=98.83 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=74.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||+|.++..+++.+++|+|+|+++.+++.++++ +.++++|+.+++..+ +.++||.|
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~----~~~~fD~i 105 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL----PDKYLDGV 105 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS----CTTCBSEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc----CCCCeeEE
Confidence 56889999999999999999999998999999999999998876 678899998875321 24689999
Q ss_pred EeCCCc------chHHHHHHHHHHhcCC
Q 007525 504 VMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
++.-.- ....++..+.++|+++
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 133 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYS 133 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTT
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCC
Confidence 985321 2368899999999986
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=96.15 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=80.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++.. +++++++|+.+.. ..++||.|
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~-------~~~~fD~v 107 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ-------LPRRYDNI 107 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC-------CSSCEEEE
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC-------cCCcccEE
Confidence 45788999999999999999999988999999999999999988643 4999999998762 25689999
Q ss_pred EeCCCc----chHHHHHHHH-HHhcCCCCCCCCCccEEEEEecc
Q 007525 504 VMNLPN----DATEFLDAFR-GIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~-~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
++.--- ....+|.++. ++++++ |++.+.+..
T Consensus 108 ~~~~~l~~~~~~~~~l~~~~~~~Lkpg--------G~l~i~~~~ 143 (250)
T 2p7i_A 108 VLTHVLEHIDDPVALLKRINDDWLAEG--------GRLFLVCPN 143 (250)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTTEEEE--------EEEEEEEEC
T ss_pred EEhhHHHhhcCHHHHHHHHHHHhcCCC--------CEEEEEcCC
Confidence 985321 2357889999 999986 566666543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-09 Score=105.02 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=80.2
Q ss_pred cEEEEEecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC
Q 007525 397 HLSLFRCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE 474 (600)
Q Consensus 397 G~~F~vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~ 474 (600)
|++.+-.++.-|..+....+ ++++. +.++ .|||+|||+|.++..+++++++|+|+|+++.+++.+++|+..
T Consensus 18 ~~~~~k~~GQnfL~d~~i~~--~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~---- 90 (271)
T 3fut_A 18 GLFADKRFGQNFLVSEAHLR--RIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG---- 90 (271)
T ss_dssp TCCCSTTSSCCEECCHHHHH--HHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----
T ss_pred CCCccccCCccccCCHHHHH--HHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----
Confidence 33333333443444443333 44443 5678 999999999999999999999999999999999999999862
Q ss_pred CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHH
Q 007525 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRG 520 (600)
Q Consensus 475 nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~ 520 (600)
++++++++|+.++--. ....+|.||.|+|+.. ..++..++.
T Consensus 91 ~~v~vi~~D~l~~~~~-----~~~~~~~iv~NlPy~iss~il~~ll~ 132 (271)
T 3fut_A 91 LPVRLVFQDALLYPWE-----EVPQGSLLVANLPYHIATPLVTRLLK 132 (271)
T ss_dssp SSEEEEESCGGGSCGG-----GSCTTEEEEEEECSSCCHHHHHHHHH
T ss_pred CCEEEEECChhhCChh-----hccCccEEEecCcccccHHHHHHHhc
Confidence 3599999999876311 0135899999999963 345544443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-08 Score=101.43 Aligned_cols=101 Identities=8% Similarity=0.006 Sum_probs=83.1
Q ss_pred eEEEEeeechHHHHHHhh-C-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 429 VVCDVFAGVGPICIPAAK-I-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAk-k-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
+|||+|||.|.++..+++ . +.+|+++|++|.+++.+++++..+.- .+++++.+|+++++... ..++||+||+|
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~-~rv~v~~~Da~~~l~~~----~~~~fDvIi~D 166 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRA-PRVKIRVDDARMVAESF----TPASRDVIIRD 166 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCT-TTEEEEESCHHHHHHTC----CTTCEEEEEEC
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCC-CceEEEECcHHHHHhhc----cCCCCCEEEEC
Confidence 899999999999999998 3 57999999999999999999876543 36999999999987531 14689999998
Q ss_pred CCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 507 LPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 507 pP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.+.. ..+|+..+.++|+++ |++-+.+..
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~Lkpg--------Gvlv~~~~~ 202 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLAPG--------GLYVANCGD 202 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCC--------cEEEEEecC
Confidence 6431 368999999999986 566666654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=111.29 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=87.3
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC--------------------CCEEEEEeCcHHHHHHH
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI--------------------VKRVYANDLNPYAVDYL 464 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk--------------------g~~V~AvDiNP~Ave~l 464 (600)
.|+.|+...+. +++. ..++.+|+|.+||+|.|.+.+++. ...++|+|+|+.+++.+
T Consensus 150 ~fyTP~~iv~~--mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 150 QYFTPRPLIKT--IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp CCCCCHHHHHH--HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred eeeCCHHHHHH--HHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 46677755433 3333 356889999999999999999863 13799999999999999
Q ss_pred HHHHHHcCCCC----cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------------HHHHHHHHHHh
Q 007525 465 ERNSVLNKLEK----KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------------TEFLDAFRGIY 522 (600)
Q Consensus 465 ~eNaklNgl~n----rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------------~eFLdaa~~lL 522 (600)
+.|+.++++.+ .+.+.++|....... ...+||+||+|||+.. ..|+..+.+.|
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~-----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~L 302 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 302 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred HHHHHHhCCCccccccCCeEeCCCcccccc-----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHh
Confidence 99999999874 278899998764321 2467999999999853 26899999999
Q ss_pred cCC
Q 007525 523 RDR 525 (600)
Q Consensus 523 k~~ 525 (600)
+++
T Consensus 303 k~g 305 (541)
T 2ar0_A 303 HPG 305 (541)
T ss_dssp EEE
T ss_pred CCC
Confidence 875
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=96.89 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=77.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..+++ ++.++++|+.+.. ..+.||.|+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~~fD~v~ 106 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN-------INRKFDLIT 106 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC-------CSCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC-------ccCCceEEE
Confidence 3678999999999999999999999999999999999999999998887 4899999998753 136799999
Q ss_pred eCC-C--c-----chHHHHHHHHHHhcCC
Q 007525 505 MNL-P--N-----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNp-P--~-----~a~eFLdaa~~lLk~~ 525 (600)
++. . . ....++..+.++++++
T Consensus 107 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 135 (246)
T 1y8c_A 107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred EcCccccccCCHHHHHHHHHHHHHhcCCC
Confidence 976 2 1 2346788888888875
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=98.50 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=81.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++++..++.. ++.++++|+.++.. ..+.||.|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~fD~v~ 151 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP------EPDSYDVIW 151 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC------CSSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCc-eEEEEEcChhhcCC------CCCCEEEEE
Confidence 58899999999999999999885 59999999999999999999887633 48999999876531 235799999
Q ss_pred eCCCc--c----hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 505 MNLPN--D----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 505 mNpP~--~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
++-.. . ...++..+.++|+++ |++.+.++.
T Consensus 152 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~ 187 (241)
T 2ex4_A 152 IQWVIGHLTDQHLAEFLRRCKGSLRPN--------GIIVIKDNM 187 (241)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCC--------eEEEEEEcc
Confidence 87432 1 237899999999986 566665543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=104.85 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=66.2
Q ss_pred eeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 407 IYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
.|+.++...+. +++.+ .++.+|||+|||+|.|++.++++ +..|+|+|+++.+++.+ .++++++
T Consensus 20 ~~~TP~~l~~~--~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~ 87 (421)
T 2ih2_A 20 RVETPPEVVDF--MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGIL 87 (421)
T ss_dssp -CCCCHHHHHH--HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEE
T ss_pred eEeCCHHHHHH--HHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEe
Confidence 46667655443 44433 35779999999999999999974 47999999999999876 3589999
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+|..++. ....||+||+|||+.
T Consensus 88 ~D~~~~~-------~~~~fD~Ii~NPPy~ 109 (421)
T 2ih2_A 88 ADFLLWE-------PGEAFDLILGNPPYG 109 (421)
T ss_dssp SCGGGCC-------CSSCEEEEEECCCCC
T ss_pred CChhhcC-------ccCCCCEEEECcCcc
Confidence 9998753 235799999999984
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=98.64 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=75.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++. +++++++|+.++. ..+.||.
T Consensus 47 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD~ 113 (263)
T 3pfg_A 47 HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFS-------LGRRFSA 113 (263)
T ss_dssp HCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCC-------CSCCEEE
T ss_pred hCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCC-------ccCCcCE
Confidence 35678999999999999999999999999999999999999998853 4899999998753 1468999
Q ss_pred EEeCC-Cc-------chHHHHHHHHHHhcCC
Q 007525 503 VVMNL-PN-------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNp-P~-------~a~eFLdaa~~lLk~~ 525 (600)
|+++. .- ....++..+.++|+++
T Consensus 114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 144 (263)
T 3pfg_A 114 VTCMFSSIGHLAGQAELDAALERFAAHVLPD 144 (263)
T ss_dssp EEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred EEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 99875 21 2346788999999876
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-09 Score=100.27 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=74.7
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc-CCccc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK-AHKIT 501 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~-~~~fD 501 (600)
.+.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.+++| .. +++++++|+.+.+.. . .++||
T Consensus 45 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~~~-----~~~~~fD 113 (226)
T 3m33_A 45 LLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----AP-HADVYEWNGKGELPA-----GLGAPFG 113 (226)
T ss_dssp HCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CT-TSEEEECCSCSSCCT-----TCCCCEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CC-CceEEEcchhhccCC-----cCCCCEE
Confidence 367899999999999999999999999999999999999999998 33 489999999654321 2 46899
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.|++++. ...++..+.++|+++
T Consensus 114 ~v~~~~~--~~~~l~~~~~~Lkpg 135 (226)
T 3m33_A 114 LIVSRRG--PTSVILRLPELAAPD 135 (226)
T ss_dssp EEEEESC--CSGGGGGHHHHEEEE
T ss_pred EEEeCCC--HHHHHHHHHHHcCCC
Confidence 9999842 346788899999986
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=102.90 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=81.8
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+.+....+.+|||+|||+|.++..++..+.+|+|+|+|+.+++.+++ .. +++++++|+.+.. + +.+
T Consensus 32 ~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------~~-~v~~~~~~~e~~~---~---~~~ 98 (257)
T 4hg2_A 32 WLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------HP-RVTYAVAPAEDTG---L---PPA 98 (257)
T ss_dssp HHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------CT-TEEEEECCTTCCC---C---CSS
T ss_pred HHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------cC-Cceeehhhhhhhc---c---cCC
Confidence 344556677899999999999999999999999999999999987653 23 4999999997753 1 357
Q ss_pred cccEEEeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 499 KITQVVMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 499 ~fD~VVmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+||.|++.--. ....++.++.++|+++ |++-++++..
T Consensus 99 sfD~v~~~~~~h~~~~~~~~~e~~rvLkpg--------G~l~~~~~~~ 138 (257)
T 4hg2_A 99 SVDVAIAAQAMHWFDLDRFWAELRRVARPG--------AVFAAVTYGL 138 (257)
T ss_dssp CEEEEEECSCCTTCCHHHHHHHHHHHEEEE--------EEEEEEEECC
T ss_pred cccEEEEeeehhHhhHHHHHHHHHHHcCCC--------CEEEEEECCC
Confidence 89999986422 1347899999999987 5777777654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=106.18 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=79.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHH-------HHHHHHcCCC-CcEEEEEcChHHH---HHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYL-------ERNSVLNKLE-KKIEVFNMDGRRF---IDA 490 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l-------~eNaklNgl~-nrV~~i~gDare~---l~~ 490 (600)
+.++++|||+|||+|.+++.+|+. + .+|+|+|+++.+++.+ ++|++.+|+. ++++++++|.... +..
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence 568999999999999999999985 5 4899999999999999 9999999953 4599999876521 111
Q ss_pred HHHhhcCCcccEEEeCCCcch---HHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 491 MFASQKAHKITQVVMNLPNDA---TEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~~a---~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
. ...||+|+++..... ...|..+.+.|+++ |.|.+.
T Consensus 320 ~-----~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpG--------G~lVi~ 358 (433)
T 1u2z_A 320 L-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVG--------CKIISL 358 (433)
T ss_dssp H-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTT--------CEEEES
T ss_pred c-----cCCCCEEEEeCccccccHHHHHHHHHHhCCCC--------eEEEEe
Confidence 1 247999999854332 34567777777775 466666
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=96.70 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=82.2
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC-C-------CEEEEEeCcHHHHHHHHHHHHHcC-----CCCcEEEEEcChHHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI-V-------KRVYANDLNPYAVDYLERNSVLNK-----LEKKIEVFNMDGRRFID 489 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk-g-------~~V~AvDiNP~Ave~l~eNaklNg-----l~nrV~~i~gDare~l~ 489 (600)
.+.++.+|||+|||+|.++..+++. + .+|+++|+++.+++.+++|+..++ .. +++++++|+.+...
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-QLLIVEGDGRKGYP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-SEEEEESCGGGCCG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC-ceEEEECCcccCCC
Confidence 3678899999999999999999984 4 499999999999999999999877 45 49999999987331
Q ss_pred HHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 490 AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 490 ~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
....||.|+++.+.. .+++.+.+.|+++ |++.+-+..
T Consensus 160 ------~~~~fD~I~~~~~~~--~~~~~~~~~Lkpg--------G~lvi~~~~ 196 (227)
T 1r18_A 160 ------PNAPYNAIHVGAAAP--DTPTELINQLASG--------GRLIVPVGP 196 (227)
T ss_dssp ------GGCSEEEEEECSCBS--SCCHHHHHTEEEE--------EEEEEEESC
T ss_pred ------cCCCccEEEECCchH--HHHHHHHHHhcCC--------CEEEEEEec
Confidence 125799999987654 2457788888876 566665543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-08 Score=88.03 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=76.3
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-----HHHHHh
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-----DAMFAS 494 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l-----~~l~~~ 494 (600)
.+.++.+|||+|||+|.+++.+++. +.+|+++|+++ +++. . +++++++|+.+.. ....
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~-~~~~~~~d~~~~~~~~~~~~~~-- 84 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------V-GVDFLQGDFRDELVMKALLERV-- 84 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------T-TEEEEESCTTSHHHHHHHHHHH--
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------C-cEEEEEcccccchhhhhhhccC--
Confidence 3678899999999999999999987 37999999999 6532 3 4899999997752 1112
Q ss_pred hcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 495 QKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
....||.|++|+|... ..++..+.++++++ |++.+.++...
T Consensus 85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~~~ 140 (180)
T 1ej0_A 85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG--------GSFVVKVFQGE 140 (180)
T ss_dssp -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEEESST
T ss_pred -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC--------cEEEEEEecCC
Confidence 2468999999988531 47888899999886 57777776553
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=99.46 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=84.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.+++|+..+++.++++++++|+.+.+ ...||
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~D 250 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVTAD 250 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC--------CCCCC
Confidence 457889999999999999999987 469999999 9999999999999999877999999987632 23499
Q ss_pred EEEeCCCcc------hHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 502 QVVMNLPND------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 502 ~VVmNpP~~------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
.|+++.... ...++..+.++++++ |++.+.++
T Consensus 251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALTILRGCVRALEPG--------GRLLVLDR 288 (374)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEC
T ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCC--------cEEEEEec
Confidence 999854331 247899999999986 67888777
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-08 Score=105.08 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
+..+||+|+|+|.+++.+.+.+.+++.+|+++.+++.+++|++. .++++++++|+...+..+.. +..+||.|+||
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~--~~~~fdLVfiD 166 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLP--PPEKRGLIFID 166 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCS--CTTSCEEEEEC
T ss_pred CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcC--CCCCccEEEEC
Confidence 56689999999999999999878999999999999999999975 34699999999999876542 24579999999
Q ss_pred CCcchH----HHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 507 LPNDAT----EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 507 pP~~a~----eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
||+... ..++.+....+... +| -++-||=+..
T Consensus 167 PPYe~k~~~~~vl~~L~~~~~r~~-~G----i~v~WYPi~~ 202 (283)
T 2oo3_A 167 PSYERKEEYKEIPYAIKNAYSKFS-TG----LYCVWYPVVN 202 (283)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHCT-TS----EEEEEEEESS
T ss_pred CCCCCCcHHHHHHHHHHHhCccCC-Ce----EEEEEEeccc
Confidence 999733 23333333333221 12 3567776654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-08 Score=94.25 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=75.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..+ +++++++|+.+.. . +.+.||.|
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~---~---~~~~fD~v 111 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----GITYERADLDKLH---L---PQDSFDLA 111 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----SEEEEECCGGGCC---C---CTTCEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----CceEEEcChhhcc---C---CCCCceEE
Confidence 4788999999999999999999987 9999999999999999886542 4899999998753 1 24679999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
++.... ....++..+.++++++
T Consensus 112 ~~~~~l~~~~~~~~~l~~~~~~L~pg 137 (243)
T 3bkw_A 112 YSSLALHYVEDVARLFRTVHQALSPG 137 (243)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred EEeccccccchHHHHHHHHHHhcCcC
Confidence 987543 2457899999999986
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=100.74 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=81.4
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+++. ..++.+|||+|||+|.+++.+++.+++|+|+|+++.+++.++++. +++++++|+.++. + +
T Consensus 25 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~---~---~ 91 (261)
T 3ege_A 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLA---L---P 91 (261)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCC---S---C
T ss_pred HHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCC---C---C
Confidence 34444 368899999999999999999998899999999999998776654 4999999997642 1 2
Q ss_pred CCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 497 AHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 497 ~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.++||.|++.... ....++..+.++++ + |++-+.++..
T Consensus 92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-g--------G~~~~~~~~~ 133 (261)
T 3ege_A 92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-D--------GTIVLLTFDI 133 (261)
T ss_dssp TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-S--------SCEEEEEECG
T ss_pred CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-C--------cEEEEEEcCC
Confidence 4689999987543 24578999999998 7 4566666654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.3e-08 Score=97.04 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=86.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+++. +.+|+++|++ .+++.+++++..+++.++++++.+|+.+.. ....||.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-------YGNDYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-------CCSCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-------CCCCCcE
Confidence 67889999999999999999987 5799999999 999999999999999878999999987641 1234999
Q ss_pred EEeC-CCcc-----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 503 VVMN-LPND-----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 503 VVmN-pP~~-----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
|++. .... ...++..+.++++++ |++.+.++....
T Consensus 236 v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~~~ 276 (335)
T 2r3s_A 236 VLLPNFLHHFDVATCEQLLRKIKTALAVE--------GKVIVFDFIPNS 276 (335)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEECCCCT
T ss_pred EEEcchhccCCHHHHHHHHHHHHHhCCCC--------cEEEEEeecCCC
Confidence 9983 3221 257889999999886 688888877544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-08 Score=92.05 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=78.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++ .++.+.++|+.+...... ....+||.|+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~--~~~~~fD~v~ 121 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV--PVGKDYDLIC 121 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS--CCCCCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc--ccCCCccEEE
Confidence 4678999999999999999999999999999999999999987 236788999887632111 1234599999
Q ss_pred eCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 505 MNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 505 mNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
++... ....++..+.++++++ |++.+.++.
T Consensus 122 ~~~~l~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~ 154 (227)
T 3e8s_A 122 ANFALLHQDIIELLSAMRTLLVPG--------GALVIQTLH 154 (227)
T ss_dssp EESCCCSSCCHHHHHHHHHTEEEE--------EEEEEEECC
T ss_pred ECchhhhhhHHHHHHHHHHHhCCC--------eEEEEEecC
Confidence 87543 2357899999999986 466665553
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=95.91 Aligned_cols=106 Identities=9% Similarity=-0.003 Sum_probs=82.8
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. ..++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++..+ .+++++++|+.+.. .
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~---~--- 154 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT---L--- 154 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC---C---
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCC---C---
Confidence 44444 3468899999999999999999875 58999999999999999998765 35999999998752 1
Q ss_pred cCCcccEEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 496 KAHKITQVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 496 ~~~~fD~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
+.+.||.|++.... ....++..+.++|+++ |++.+.++
T Consensus 155 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~ 198 (254)
T 1xtp_A 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN--------GYIFFKEN 198 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC--------eEEEEEec
Confidence 24689999986542 2357889999999986 46666554
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-08 Score=93.40 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=83.0
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
.++++. ..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++ .. +++++++|+.+..
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~----- 91 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LP-NTNFGKADLATWK----- 91 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----ST-TSEEEECCTTTCC-----
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CC-CcEEEECChhhcC-----
Confidence 345554 457889999999999999999987 78999999999999999988 23 4899999998753
Q ss_pred hhcCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 494 SQKAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
....||.|+++... ....++..+.++++++ |++.+.++..
T Consensus 92 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~ 135 (259)
T 2p35_A 92 --PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESG--------GVLAVQMPDN 135 (259)
T ss_dssp --CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE--------EEEEEEEECC
T ss_pred --ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC--------eEEEEEeCCC
Confidence 14679999997643 2357888899999886 5676666543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-08 Score=95.83 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=80.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++ . ++.++++|+.++. ..++||.|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~-------~~~~fD~v 121 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----P-HLHFDVADARNFR-------VDKPLDAV 121 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----T-TSCEEECCTTTCC-------CSSCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----C-CCEEEECChhhCC-------cCCCcCEE
Confidence 457889999999999999999998889999999999999999875 3 4789999998742 13679999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++... ....++..+.++++++ |++.+.++..
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~Lkpg--------G~l~~~~~~~ 157 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALKSG--------GRFVAEFGGK 157 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEECT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcCCC--------cEEEEEecCC
Confidence 987543 2357899999999986 5666666544
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-08 Score=97.63 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=68.5
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.++++. +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++|++.. . +++++++|+.++.. .
T Consensus 20 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~v~~~~~D~~~~~~---~-- 91 (244)
T 1qam_A 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH--D-NFQVLNKDILQFKF---P-- 91 (244)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC--C-SEEEECCCGGGCCC---C--
T ss_pred HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC--C-CeEEEEChHHhCCc---c--
Confidence 456654 457899999999999999999999999999999999999999998642 3 59999999987521 0
Q ss_pred cCCcccEEEeCCCcch
Q 007525 496 KAHKITQVVMNLPNDA 511 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a 511 (600)
....+ .|+.|||+..
T Consensus 92 ~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 92 KNQSY-KIFGNIPYNI 106 (244)
T ss_dssp SSCCC-EEEEECCGGG
T ss_pred cCCCe-EEEEeCCccc
Confidence 01234 6999999964
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-08 Score=97.10 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHH----HHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLER----NSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~e----NaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
..++.+|||+|||+|.+++.+|+. +++|+|+|+++.+++.+.+ ++..+++.+ ++++++|+.+... ..
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~-v~~~~~d~~~l~~------~~ 97 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-LLYLWATAERLPP------LS 97 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT-EEEEECCSTTCCS------CC
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc-eEEEecchhhCCC------CC
Confidence 567899999999999999999998 6799999999998876444 444566765 9999999987421 12
Q ss_pred CcccEEEeCCCcch---------HHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDA---------TEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a---------~eFLdaa~~lLk~~ 525 (600)
.. |.|++..+... ..++..+.++|+++
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 133 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPG 133 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEE
T ss_pred CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCC
Confidence 34 77776665432 46788999999986
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-08 Score=114.33 Aligned_cols=112 Identities=12% Similarity=0.169 Sum_probs=85.7
Q ss_pred eeecChhHHHH-HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHH------cCCC
Q 007525 407 IYWNSKLATER-QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVL------NKLE 474 (600)
Q Consensus 407 fy~n~Rl~tEr-~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNakl------Ngl~ 474 (600)
-+|++.+..++ ..+++. ..++.+|||+|||+|.+++.+|+.+ .+|+|+|+++.+++.++++++. +++.
T Consensus 699 gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 699 AFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred CcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence 35567666555 334443 2478999999999999999999987 7999999999999999997653 3565
Q ss_pred CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 475 nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
+++++++|+.++.. ....||.|++.-.- ....++..+.++|+++
T Consensus 779 -nVefiqGDa~dLp~------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 779 -SATLYDGSILEFDS------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp -EEEEEESCTTSCCT------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -ceEEEECchHhCCc------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 49999999987532 24689999985322 1235888999999875
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=98.54 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=71.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCC-----CcEEEEEcChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLE-----KKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~-----nrV~~i~gDare~l~~l~~~~~ 496 (600)
.++|++|||||||.|+-++.+|..+ ..|+|+|+++.-++.+++|++..++. +++.+.+.|++.+... .
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~-----~ 220 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL-----E 220 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH-----S
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh-----c
Confidence 6789999999999999999999875 37999999999999999999998764 3599999999987542 2
Q ss_pred CCcccEEEeCCCcch
Q 007525 497 AHKITQVVMNLPNDA 511 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a 511 (600)
.+.||.|++|+|.++
T Consensus 221 ~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTT 235 (359)
T ss_dssp TTCEEEEEEECCCCC
T ss_pred cccCCEEEECCccCC
Confidence 568999999999753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-08 Score=99.39 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=73.5
Q ss_pred cEEEEEecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCE----EEEEeCcHHHHHHHHHHHHH
Q 007525 397 HLSLFRCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKR----VYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 397 G~~F~vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~----V~AvDiNP~Ave~l~eNakl 470 (600)
|++.+-.++.-|..+....+ ++++. +.+++.|||+|||+|.++..+++++.. |+|+|+++.+++.+++|.
T Consensus 13 ~~~~~k~~GQ~fL~d~~i~~--~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-- 88 (279)
T 3uzu_A 13 GHFARKRFGQNFLVDHGVID--AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-- 88 (279)
T ss_dssp -----CCCSCCEECCHHHHH--HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--
T ss_pred CCCccccCCccccCCHHHHH--HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--
Confidence 44444455554554443333 44443 568899999999999999999998776 999999999999999993
Q ss_pred cCCCCcEEEEEcChHHHH-HHHHHhhcCCcccEEEeCCCcch
Q 007525 471 NKLEKKIEVFNMDGRRFI-DAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l-~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
.++++++++|+.++- ..+... .....+.||.|||+..
T Consensus 89 ---~~~v~~i~~D~~~~~~~~~~~~-~~~~~~~vv~NlPY~i 126 (279)
T 3uzu_A 89 ---GELLELHAGDALTFDFGSIARP-GDEPSLRIIGNLPYNI 126 (279)
T ss_dssp ---GGGEEEEESCGGGCCGGGGSCS-SSSCCEEEEEECCHHH
T ss_pred ---CCCcEEEECChhcCChhHhccc-ccCCceEEEEccCccc
Confidence 235999999998763 111100 0003457999999964
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=100.01 Aligned_cols=112 Identities=12% Similarity=0.064 Sum_probs=85.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHc-----C-CC-CcEEEEEcChHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLN-----K-LE-KKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklN-----g-l~-nrV~~i~gDare~l~~l~~ 493 (600)
..++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.+++|++.+ | +. .+++++++|+.+.......
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 347889999999999999999985 459999999999999999999876 4 32 3599999999875210000
Q ss_pred hhcCCcccEEEeCCCcc----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 494 SQKAHKITQVVMNLPND----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.-+.++||.|+++.... ...++..+.++|+++ |++-+.++..
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~~ 206 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG--------GELYFSDVYA 206 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC--------CEEEEEEecc
Confidence 00246899999976432 357899999999986 5666665543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=87.29 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=72.9
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhC-C----------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEE-EcChHHHHH
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKI-V----------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVF-NMDGRRFID 489 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkk-g----------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i-~gDare~l~ 489 (600)
..+.++.+|||+|||+|.+++.+++. + ++|+|+|+++.+ .+. +++++ ++|+.+...
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~-~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLE-GATFLCPADVTDPRT 85 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCT-TCEEECSCCTTSHHH
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCC-CCeEEEeccCCCHHH
Confidence 34678999999999999999999986 4 799999999942 234 38888 899765421
Q ss_pred --HHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 490 --AMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 490 --~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.+...-....||+|++|.+... ..++..+.++|+++ |++.+..|..
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~lv~~~~~~ 148 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG--------GTFLCKTWAG 148 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEECCS
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC--------CEEEEEecCC
Confidence 1111001347999999874321 36788889999986 5777776654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.7e-08 Score=92.51 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++. . ++.++++|+.+.. ....||.|
T Consensus 38 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~-------~~~~~D~v 104 (239)
T 3bxo_A 38 TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----P-DATLHQGDMRDFR-------LGRKFSAV 104 (239)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----T-TCEEEECCTTTCC-------CSSCEEEE
T ss_pred cCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----C-CCEEEECCHHHcc-------cCCCCcEE
Confidence 567899999999999999999998889999999999999999874 3 3889999997752 13579999
Q ss_pred Ee-C-----CC--cchHHHHHHHHHHhcCC
Q 007525 504 VM-N-----LP--NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 Vm-N-----pP--~~a~eFLdaa~~lLk~~ 525 (600)
++ . .+ .....++..+.++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 134 (239)
T 3bxo_A 105 VSMFSSVGYLKTTEELGAAVASFAEHLEPG 134 (239)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred EEcCchHhhcCCHHHHHHHHHHHHHhcCCC
Confidence 93 2 11 22357889999999876
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9e-08 Score=106.05 Aligned_cols=77 Identities=12% Similarity=-0.035 Sum_probs=67.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++-+|||+|||.|.++.++|+.|+.|+|+|+++.+++.|+..+..++.-+ |.+.++|+.++.... ..++||+|
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~v 138 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAAL----EEGEFDLA 138 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHC----CTTSCSEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhc----cCCCccEE
Confidence 5567899999999999999999999999999999999999999999888654 999999999886431 24689998
Q ss_pred Ee
Q 007525 504 VM 505 (600)
Q Consensus 504 Vm 505 (600)
++
T Consensus 139 ~~ 140 (569)
T 4azs_A 139 IG 140 (569)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=96.99 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=84.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.+++.+ .+++++|+ +.+++.+++|+..+++.++++++++|+.+.+ ...||
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~D 251 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRKAD 251 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSCEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC--------CCCcc
Confidence 4578899999999999999999863 69999999 9999999999999999877999999987632 23499
Q ss_pred EEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.|++.... ....++..+.++++++ |++.+.++.
T Consensus 252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~ 290 (360)
T 1tw3_A 252 AIILSFVLLNWPDHDAVRILTRCAEALEPG--------GRILIHERD 290 (360)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEE--------EEEEEEECC
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHhcCCC--------cEEEEEEEe
Confidence 99985432 1247899999999886 678888776
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=96.86 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=84.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++ +.+|+++|+ |.+++.+++|++.+++.++++++.+|+.+.. ....|
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~D 258 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--------YPEAD 258 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC--------CCCCS
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC--------CCCCC
Confidence 467889999999999999999987 469999999 9999999999999999888999999998642 12349
Q ss_pred EEEeCCCcc------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPND------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~~------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++..... ...+|..+.++++++ |++.+.++..
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pg--------G~l~i~e~~~ 298 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSG--------GRLLILDMVI 298 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTT--------CEEEEEEECC
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCCC--------CEEEEEeccc
Confidence 998854331 356788888888876 5777777664
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=89.51 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=78.4
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
....++.+|||+|||+|.++..+ +. +|+++|+++.+++.+++++ . ++.++++|+.+.. . +.++|
T Consensus 32 ~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~---~---~~~~f 96 (211)
T 2gs9_A 32 GLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----P-EATWVRAWGEALP---F---PGESF 96 (211)
T ss_dssp TTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----T-TSEEECCCTTSCC---S---CSSCE
T ss_pred HhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----C-CcEEEEcccccCC---C---CCCcE
Confidence 34568899999999999999887 66 9999999999999999987 2 4789999987642 1 24679
Q ss_pred cEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 501 TQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 501 D~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|.|+++..- ....++..+.++++++ |++.+..+..
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~ 135 (211)
T 2gs9_A 97 DVVLLFTTLEFVEDVERVLLEARRVLRPG--------GALVVGVLEA 135 (211)
T ss_dssp EEEEEESCTTTCSCHHHHHHHHHHHEEEE--------EEEEEEEECT
T ss_pred EEEEEcChhhhcCCHHHHHHHHHHHcCCC--------CEEEEEecCC
Confidence 999986432 2467899999999986 5676666554
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=93.06 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=78.4
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++.. .+ ++++|+.+.. + +.+.||.
T Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~----~~---~~~~d~~~~~---~---~~~~fD~ 117 (260)
T 2avn_A 51 YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KN---VVEAKAEDLP---F---PSGAFEA 117 (260)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SC---EEECCTTSCC---S---CTTCEEE
T ss_pred hcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC----CC---EEECcHHHCC---C---CCCCEEE
Confidence 35578999999999999999999999999999999999999998864 11 7888887642 1 2467999
Q ss_pred EEeCCC-----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 503 VVMNLP-----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 503 VVmNpP-----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|++... .....++..+.++|+++ |++.+..+.
T Consensus 118 v~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~ 154 (260)
T 2avn_A 118 VLALGDVLSYVENKDKAFSEIRRVLVPD--------GLLIATVDN 154 (260)
T ss_dssp EEECSSHHHHCSCHHHHHHHHHHHEEEE--------EEEEEEEEB
T ss_pred EEEcchhhhccccHHHHHHHHHHHcCCC--------eEEEEEeCC
Confidence 998642 22467899999999986 566665554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-08 Score=106.00 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=75.6
Q ss_pred eecChhHHHH-HHHHhc---CCCCCeEEEEeeechHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHHHHHcCCC-CcE
Q 007525 408 YWNSKLATER-QRLLSG---FNFKDVVCDVFAGVGPICIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLE-KKI 477 (600)
Q Consensus 408 y~n~Rl~tEr-~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkk-----g~~V~AvDiNP~Ave~l~eNaklNgl~-nrV 477 (600)
|+.|+...+- .+++.. ..++.+|+|.+||+|.|.+.+++. ...++|+|+|+.++..++.|+.++|+. +++
T Consensus 199 fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~ 278 (542)
T 3lkd_A 199 FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQ 278 (542)
T ss_dssp CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGE
T ss_pred ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCcc
Confidence 5567655443 223322 236789999999999999999875 469999999999999999999999995 358
Q ss_pred EEEEcChHHH--HHHHHHhhcCCcccEEEeCCCcc
Q 007525 478 EVFNMDGRRF--IDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 478 ~~i~gDare~--l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
.+.++|.... .. ....+||+||+|||+.
T Consensus 279 ~I~~gDtL~~d~p~-----~~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 279 FLHNADTLDEDWPT-----QEPTNFDGVLMNPPYS 308 (542)
T ss_dssp EEEESCTTTSCSCC-----SSCCCBSEEEECCCTT
T ss_pred ceEecceecccccc-----cccccccEEEecCCcC
Confidence 9999998653 11 0246799999999973
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.1e-07 Score=90.73 Aligned_cols=104 Identities=13% Similarity=-0.048 Sum_probs=84.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+++. +.+++++|+ |.+++.+++++...++.++|++..+|..+.. +..||.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------p~~~D~ 238 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL--------PAGAGG 238 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------CCSCSE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC--------CCCCcE
Confidence 45689999999999999999985 469999999 9999999999999999878999999997422 237999
Q ss_pred EEeC-----CCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 503 VVMN-----LPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 503 VVmN-----pP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
|++. .|.. ...+|..+.++++++ |++-++++...+
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~~~ 279 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSG--------GVVLVIEAVAGD 279 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTT--------CEEEEEECCCC-
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCC--------CEEEEEeecCCC
Confidence 9984 3332 367899999999986 588888776543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=91.38 Aligned_cols=105 Identities=11% Similarity=0.060 Sum_probs=85.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++ +.+++++|+ |.+++.+++++...++.++|++..+|..+.. ...||
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------p~~~D 270 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI--------PDGAD 270 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC--------CSSCS
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC--------CCCce
Confidence 456789999999999999999986 469999999 9999999999999999888999999997422 23799
Q ss_pred EEEeCC-----Ccc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMNL-----PND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmNp-----P~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|++.- |.. ...+|..+.++++++ |++-+.++...+
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg--------G~l~i~e~~~~~ 312 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPD--------SRLLVIDNLIDE 312 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTT--------CEEEEEEEBCCS
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCC--------CEEEEEEeccCC
Confidence 999843 222 246889999999886 578887776544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-08 Score=109.22 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=72.4
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC-----------------CCEEEEEeCcHHHHHHHHHH
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-----------------VKRVYANDLNPYAVDYLERN 467 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-----------------g~~V~AvDiNP~Ave~l~eN 467 (600)
.|+.|+...+. |++. ..++ +|+|.+||+|.|.+.+++. ...++|+|+|+.+++.++.|
T Consensus 226 ~fyTP~~Vv~l--mv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 226 QYYTPKSIVTL--IVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp TTCCCHHHHHH--HHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred eEeCCHHHHHH--HHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 45667655443 3333 2233 9999999999999988642 35899999999999999999
Q ss_pred HHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 468 SVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 468 aklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
+.++++...+.+.++|...... . ...+||+||+|||+..
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~~--~---~~~~fD~Iv~NPPf~~ 341 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDDQ--H---PDLRADFVMTNPPFNM 341 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSCS--C---TTCCEEEEEECCCSSC
T ss_pred HHHhCCCcccceeccchhcCcc--c---ccccccEEEECCCcCC
Confidence 9999997655558888754311 0 1357999999999863
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=92.87 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=65.7
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
.++++. ..++++|||+|||+|.++..++++| ++|+|+|+++.+++.+++| +. .+++++++|+.++-- ..
T Consensus 21 ~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~-~~v~~i~~D~~~~~~---~~ 92 (249)
T 3ftd_A 21 KKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GD-ERLEVINEDASKFPF---CS 92 (249)
T ss_dssp HHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CC-TTEEEECSCTTTCCG---GG
T ss_pred HHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cC-CCeEEEEcchhhCCh---hH
Confidence 345544 4578999999999999999999996 7999999999999999987 22 359999999987621 10
Q ss_pred hcCCcccEEEeCCCcch
Q 007525 495 QKAHKITQVVMNLPNDA 511 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~a 511 (600)
... ...|+.|||+..
T Consensus 93 -~~~-~~~vv~NlPy~i 107 (249)
T 3ftd_A 93 -LGK-ELKVVGNLPYNV 107 (249)
T ss_dssp -SCS-SEEEEEECCTTT
T ss_pred -ccC-CcEEEEECchhc
Confidence 011 348999999964
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-08 Score=97.33 Aligned_cols=98 Identities=5% Similarity=-0.021 Sum_probs=74.9
Q ss_pred CCCeEEEEeeechHHHHHHhhC------CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI------VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk------g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~ 497 (600)
++.+|||+|||+|..++.+|+. +++|+|+|+++.+++.++ ++.++|+++++|+.+. +..+ ..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~----~~ 150 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHL----RE 150 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGG----SS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhh----cc
Confidence 5689999999999999999986 579999999999998876 2234699999999875 2211 12
Q ss_pred CcccEEEeCCCcc-hHHHHHHHHH-HhcCCCCCCCCCccEEEEEec
Q 007525 498 HKITQVVMNLPND-ATEFLDAFRG-IYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 498 ~~fD~VVmNpP~~-a~eFLdaa~~-lLk~~~~~g~~~~p~IHvY~F 541 (600)
..||.|++|.... ...++..+.+ .|+++ |++.+..+
T Consensus 151 ~~fD~I~~d~~~~~~~~~l~~~~r~~LkpG--------G~lv~~d~ 188 (236)
T 2bm8_A 151 MAHPLIFIDNAHANTFNIMKWAVDHLLEEG--------DYFIIEDM 188 (236)
T ss_dssp SCSSEEEEESSCSSHHHHHHHHHHHTCCTT--------CEEEECSC
T ss_pred CCCCEEEECCchHhHHHHHHHHHHhhCCCC--------CEEEEEeC
Confidence 3699999876543 3467777776 88886 57777654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-07 Score=92.85 Aligned_cols=101 Identities=13% Similarity=0.010 Sum_probs=75.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcC------CCCcEEEEEcChHHHHH-HHHHhh
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNK------LEKKIEVFNMDGRRFID-AMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNg------l~nrV~~i~gDare~l~-~l~~~~ 495 (600)
..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++...++ ...+++++++|+.+... ..+. .
T Consensus 32 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~ 110 (313)
T 3bgv_A 32 KKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR-D 110 (313)
T ss_dssp C--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS-S
T ss_pred cCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc-c
Confidence 357889999999999999999976 4699999999999999999987753 22259999999987520 0000 0
Q ss_pred cCCcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
..++||.|+++..- ....++..+.++|+++
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 148 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence 13479999987533 1247888888888876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=93.36 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCE--EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-HHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKR--VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~--V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|.++. +++ +.+ |+|+|+++.+++.+++|+..+ . +++++++|+.++ +...... ....
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--~-~v~~i~~D~~~~~~~~~~~~--~~~~ 91 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--P-KLTIYQQDAMTFNFGELAEK--MGQP 91 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--G-GEEEECSCGGGCCHHHHHHH--HTSC
T ss_pred CCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--C-ceEEEECchhhCCHHHhhcc--cCCc
Confidence 5688999999999999999 664 567 999999999999999987543 2 599999999875 3322210 1245
Q ss_pred cEEEeCCCcch
Q 007525 501 TQVVMNLPNDA 511 (600)
Q Consensus 501 D~VVmNpP~~a 511 (600)
+.||.|+|+..
T Consensus 92 ~~vvsNlPY~i 102 (252)
T 1qyr_A 92 LRVFGNLPYNI 102 (252)
T ss_dssp EEEEEECCTTT
T ss_pred eEEEECCCCCc
Confidence 89999999964
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.7e-07 Score=91.14 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=84.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+ .+|||+|||+|.+++.++++ +.+++++|+ |.+++.+++++..+++.++++++.+|..+.. ...||
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~D 235 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV--------PSNGD 235 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC--------CSSCS
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC--------CCCCC
Confidence 345 89999999999999999986 569999999 9999999999998888778999999987621 35699
Q ss_pred EEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++.-.- ....++..+.++++++ |++-+.++..
T Consensus 236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~ 275 (334)
T 2ip2_A 236 IYLLSRIIGDLDEAASLRLLGNCREAMAGD--------GRVVVIERTI 275 (334)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHSCTT--------CEEEEEECCB
T ss_pred EEEEchhccCCCHHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence 99985432 2347899999999886 5787877654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-08 Score=94.46 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=74.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCC----------------------------CC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKL----------------------------EK 475 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl----------------------------~n 475 (600)
.++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.+++++..++. .+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4678999999999999999999887 999999999999999999876541 11
Q ss_pred cE-EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc--------hHHHHHHHHHHhcCC
Q 007525 476 KI-EVFNMDGRRFIDAMFASQKAHKITQVVMNLPND--------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 476 rV-~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~--------a~eFLdaa~~lLk~~ 525 (600)
++ .++++|+.+... ......+.||.|++...-. ...++..+.++|+++
T Consensus 135 ~v~~~~~~d~~~~~~--~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 191 (265)
T 2i62_A 135 AIKQVLKCDVTQSQP--LGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 191 (265)
T ss_dssp HEEEEEECCTTSSST--TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hheeEEEeeeccCCC--CCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence 27 899999877531 0000126799999864322 346788888888876
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-07 Score=91.47 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=77.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||.|.++..+++. +.+|+++|+++.+++.++++. . ++.++.+|+.+.. + ..++||.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~---~---~~~~fD~ 151 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----P-QVTFCVASSHRLP---F---SDTSMDA 151 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTSCS---B---CTTCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----C-CcEEEEcchhhCC---C---CCCceeE
Confidence 57899999999999999999987 679999999999999998874 2 3789999987642 1 2467999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 503 VVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 503 VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++.... .++..+.++++++ |++.+..+..
T Consensus 152 v~~~~~~---~~l~~~~~~L~pg--------G~l~~~~~~~ 181 (269)
T 1p91_A 152 IIRIYAP---CKAEELARVVKPG--------GWVITATPGP 181 (269)
T ss_dssp EEEESCC---CCHHHHHHHEEEE--------EEEEEEEECT
T ss_pred EEEeCCh---hhHHHHHHhcCCC--------cEEEEEEcCH
Confidence 9986543 3578899999986 5777766554
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.1e-08 Score=95.31 Aligned_cols=100 Identities=14% Similarity=-0.032 Sum_probs=72.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCC----------------------------
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLE---------------------------- 474 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~---------------------------- 474 (600)
..+|.+|||+|||+|.+++.++..|. +|+|+|+++.+++.++++++.+...
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 35788999999999999998888875 7999999999999999998765311
Q ss_pred CcEE-EEEcChHHHHHHHHHhhcCCcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 475 KKIE-VFNMDGRRFIDAMFASQKAHKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 475 nrV~-~i~gDare~l~~l~~~~~~~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
.+++ ++++|+.+... +.....++||.|++..-. .-...+..+.++|+++
T Consensus 133 ~~i~~~~~~D~~~~~~--~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG 190 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNP--LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 190 (263)
T ss_dssp HHEEEEEECCTTSSST--TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhhheEEeccccCCCC--CCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 1244 88888876311 000013579999997422 1135678888899886
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=8e-07 Score=92.56 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=85.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-HHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-DAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l-~~l~~~~~~~~fD 501 (600)
....+|||+|||+|.+++.++++ +.+|+++|+ |.+++.+++++..+++.++|+++.+|+.+.- . .+..||
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~p~~~D 250 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP------FPTGFD 250 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC------CCCCCS
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC------CCCCcC
Confidence 45689999999999999999985 569999999 9999999999999998778999999987630 0 025799
Q ss_pred EEEeC-----CCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMN-----LPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmN-----pP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|++. .|. ....+|..+.++++++ |++-+.++....
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~~~ 292 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVAQSIGKD--------SKVYIMETLWDR 292 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHHHHCCTT--------CEEEEEECCTTS
T ss_pred EEEEechhhhCCHHHHHHHHHHHHHhcCCC--------cEEEEEeeccCC
Confidence 99983 332 2357889999999986 578887765543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-08 Score=100.75 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=67.9
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++|++ . .++++++++|+.++. .. .
T Consensus 20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~---~~--~ 91 (245)
T 1yub_A 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQ---FP--N 91 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTT---CC--C
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcC---cc--c
Confidence 34443 4678899999999999999999999999999999999999999876 2 235999999998753 10 0
Q ss_pred CCcccEEEeCCCcch
Q 007525 497 AHKITQVVMNLPNDA 511 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a 511 (600)
.+.| .|++|||+..
T Consensus 92 ~~~f-~vv~n~Py~~ 105 (245)
T 1yub_A 92 KQRY-KIVGNIPYHL 105 (245)
T ss_dssp SSEE-EEEEECCSSS
T ss_pred CCCc-EEEEeCCccc
Confidence 2468 8999999864
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.2e-07 Score=83.56 Aligned_cols=100 Identities=6% Similarity=-0.009 Sum_probs=70.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-----------
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI----------- 488 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l----------- 488 (600)
+.++.+|||+|||+|.+++.++++ +++|+|+|+++.+ ... +++++++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~-~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIP-NVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCT-TCEEEECCTTTTSSCCC-------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCC-CceEEEccccchhhhhhccccccc
Confidence 678899999999999999999986 3699999999932 233 4889999987642
Q ss_pred --------HHHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 489 --------DAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 489 --------~~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..+...-....||.|++|.+... ...+..+.++|+++ |++-+-.|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg--------G~lv~~~~~~ 157 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG--------GTYIVKMYLG 157 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEEECS
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC--------CEEEEEEeCC
Confidence 11100002468999999864321 13677788899886 5666655543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=93.13 Aligned_cols=91 Identities=10% Similarity=-0.109 Sum_probs=75.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH--cCC-CCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL--NKL-EKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl--Ngl-~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++.. +++ ..+++++.+|+.+++ ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---------CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---------hhCC
Confidence 4568999999999999999988767999999999999999988643 223 236999999998874 3699
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|++|.+.. ..|+..+.++|+++
T Consensus 142 ~Ii~d~~dp-~~~~~~~~~~L~pg 164 (262)
T 2cmg_A 142 LIFCLQEPD-IHRIDGLKRMLKED 164 (262)
T ss_dssp EEEESSCCC-HHHHHHHHTTEEEE
T ss_pred EEEECCCCh-HHHHHHHHHhcCCC
Confidence 999997653 45899999999986
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.9e-07 Score=91.72 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=86.3
Q ss_pred CC-CCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NF-KDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~-ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.+ +.+|||+|||+|.++..+++. +.+++++|+ |.+++.+++++..+++.++++++.+|..+.... ....||
T Consensus 177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~D 250 (352)
T 3mcz_A 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-----EGGAAD 250 (352)
T ss_dssp GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-----TTCCEE
T ss_pred cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-----CCCCcc
Confidence 45 789999999999999999986 469999999 899999999999999988899999998765210 135699
Q ss_pred EEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|++.-.- ....+|..+.++++++ |++.++++...+
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~~~ 292 (352)
T 3mcz_A 251 VVMLNDCLHYFDAREAREVIGHAAGLVKPG--------GALLILTMTMND 292 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEE--------EEEEEEEECCCT
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHcCCC--------CEEEEEEeccCC
Confidence 99984322 2357899999999886 688888776443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-07 Score=96.41 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=77.2
Q ss_pred cChhHHHHHHHHh--cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHH-HcCCCCcEEEE--EcCh
Q 007525 410 NSKLATERQRLLS--GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV-LNKLEKKIEVF--NMDG 484 (600)
Q Consensus 410 n~Rl~tEr~Riv~--~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNak-lNgl~nrV~~i--~gDa 484 (600)
.+|....-..+.+ .+.+|.+|||+|||+|.++..+|++ ++|+|+|+++ +...++++.. .++...++.++ ++|+
T Consensus 64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~ 141 (276)
T 2wa2_A 64 VSRGTAKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV 141 (276)
T ss_dssp -CHHHHHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG
T ss_pred CchHHHHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH
Confidence 3553332233443 3678999999999999999999998 7899999999 4332222110 01111148899 9999
Q ss_pred HHHHHHHHHhhcCCcccEEEeCCCcc----------hHHHHHHHHHHhcCCCCCCCCCcc--EEEEEecc
Q 007525 485 RRFIDAMFASQKAHKITQVVMNLPND----------ATEFLDAFRGIYRDRPEDAKFTFP--KIHLYGFS 542 (600)
Q Consensus 485 re~l~~l~~~~~~~~fD~VVmNpP~~----------a~eFLdaa~~lLk~~~~~g~~~~p--~IHvY~F~ 542 (600)
.++. ..+||.|++|.... ...+|..+.++|+++ | .+.+-.|.
T Consensus 142 ~~l~--------~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpG--------G~~~~v~~~~~ 195 (276)
T 2wa2_A 142 TKME--------PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYN--------QGCGFCVKVLN 195 (276)
T ss_dssp GGCC--------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHS--------TTCEEEEEESC
T ss_pred hhCC--------CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccC--------CCcEEEEEeCC
Confidence 8742 46899999997521 123678888999987 5 56665666
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=90.20 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=70.3
Q ss_pred CCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCC-----cEEEEEcChHHH--HHHHHHhhcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEK-----KIEVFNMDGRRF--IDAMFASQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~n-----rV~~i~gDare~--l~~l~~~~~~ 497 (600)
++.+|||+|||.|.....+++. +.+|+|+|+++.+++.|++.+...++.. .+++.++|+..- ...+...-+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4789999999999877766655 4799999999999999999887766531 156777777210 0111110124
Q ss_pred CcccEEEeCC-------CcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNL-------PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNp-------P~~a~eFLdaa~~lLk~~ 525 (600)
++||+|++.. +.....++.++.++|+++
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG 162 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 6899998532 113358999999999987
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5e-07 Score=92.29 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=67.7
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
.+...+.....|||+|||.|+|+++++.. + .+|+|+|+|+.+++.+++|+..||+. ..+..+|...-. +
T Consensus 125 ~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~-------p 195 (281)
T 3lcv_B 125 ELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR-------L 195 (281)
T ss_dssp HHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-------C
T ss_pred HHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-------C
Confidence 34445666789999999999999999886 3 59999999999999999999999997 677888876543 4
Q ss_pred CCcccEEEeCCC
Q 007525 497 AHKITQVVMNLP 508 (600)
Q Consensus 497 ~~~fD~VVmNpP 508 (600)
.+.+|+++++.-
T Consensus 196 ~~~~DvaL~lkt 207 (281)
T 3lcv_B 196 DEPADVTLLLKT 207 (281)
T ss_dssp CSCCSEEEETTC
T ss_pred CCCcchHHHHHH
Confidence 678999998863
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=88.57 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=65.1
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+.+. .+..+|||+|||.|+|+++++ .+..++|+||++.+++.+++|+..|++. ..+..+|..... +.+.
T Consensus 100 i~~~-~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~-------~~~~ 168 (253)
T 3frh_A 100 IFSA-ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAP-------PAEA 168 (253)
T ss_dssp HTSS-CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSC-------CCCB
T ss_pred HhcC-CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCC-------CCCC
Confidence 3444 567899999999999999998 5569999999999999999999999964 788889987643 3568
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
+|.|+++.
T Consensus 169 ~DvvLllk 176 (253)
T 3frh_A 169 GDLALIFK 176 (253)
T ss_dssp CSEEEEES
T ss_pred cchHHHHH
Confidence 99998874
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-07 Score=85.05 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHHhcC-CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 419 RLLSGF-NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 419 Riv~~l-~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.+++.+ .++.+|||+|||.|.++..+++.+.+|+++|+++.+++.++++. ..++++|+.++... . ..
T Consensus 24 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~-~---~~ 91 (230)
T 3cc8_A 24 NLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMP-Y---EE 91 (230)
T ss_dssp HHHTTCCTTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCC-S---CT
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCC-C---CC
Confidence 355554 47889999999999999999998889999999999999988764 26788998753111 1 23
Q ss_pred CcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+.||.|+++-.. ....++..+.++++++
T Consensus 92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~g 123 (230)
T 3cc8_A 92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQN 123 (230)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEE
T ss_pred CccCEEEECChhhhcCCHHHHHHHHHHHcCCC
Confidence 679999986432 2357888888888875
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-07 Score=94.89 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=72.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHH-HcCCCCcEEEE--EcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV-LNKLEKKIEVF--NMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNak-lNgl~nrV~~i--~gDare~l~~l~~~~~~~~ 499 (600)
.+.+|.+|||+|||+|.++..+|++ ++|+|+|+++ +...++++.. .+....++.++ ++|+.++. ...
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--------~~~ 140 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--------VER 140 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--------CCC
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--------CCC
Confidence 3678999999999999999999998 7899999999 3222221110 01111148888 89998742 468
Q ss_pred ccEEEeCCCcc----------hHHHHHHHHHHhcCCCCCCCCCcc--EEEEEecc
Q 007525 500 ITQVVMNLPND----------ATEFLDAFRGIYRDRPEDAKFTFP--KIHLYGFS 542 (600)
Q Consensus 500 fD~VVmNpP~~----------a~eFLdaa~~lLk~~~~~g~~~~p--~IHvY~F~ 542 (600)
||.|++|.... ...+|..+.++|+++ | .+.+-.|.
T Consensus 141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpG--------G~~~fv~kv~~ 187 (265)
T 2oxt_A 141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKN--------PSADFVVKVLC 187 (265)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCEEEEEESC
T ss_pred CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccC--------CCeEEEEEeCC
Confidence 99999986521 123678888999987 5 56665565
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=99.14 Aligned_cols=92 Identities=27% Similarity=0.361 Sum_probs=74.3
Q ss_pred CCCeEEEEeeechHH---HHHHhhCC-C--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 426 FKDVVCDVFAGVGPI---CIPAAKIV-K--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 426 ~ge~VLDlfAGvG~F---aIpaAkkg-~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+.+|+|+|||.|++ ++.|++++ . +|||||-||.|. .++++++.|+++++|+++++|++++- .+++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~-------LPEK 428 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWV-------APEK 428 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCC-------CSSC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceecc-------CCcc
Confidence 345899999999999 66666553 3 799999999766 57778999999999999999999873 3578
Q ss_pred ccEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
+|+||..+=. .+.+.|++..+.|+++
T Consensus 429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPg 460 (637)
T 4gqb_A 429 ADIIVSELLGSFADNELSPECLDGAQHFLKDD 460 (637)
T ss_dssp EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEE
T ss_pred cCEEEEEcCcccccccCCHHHHHHHHHhcCCC
Confidence 9999976543 3567888888888875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.2e-07 Score=91.81 Aligned_cols=100 Identities=9% Similarity=0.044 Sum_probs=70.5
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeC----cHHHHHHHHHHHHHcCC-CCcEEEEEc-ChHHHHHHHHHhhc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDL----NPYAVDYLERNSVLNKL-EKKIEVFNM-DGRRFIDAMFASQK 496 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDi----NP~Ave~l~eNaklNgl-~nrV~~i~g-Dare~l~~l~~~~~ 496 (600)
.+.+|.+|||+|||+|.++..+|++ ++|+|+|+ ++..++.+ ..+.. .++|+++++ |+.++.
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~D~~~l~-------- 145 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPI----PMSTYGWNLVRLQSGVDVFFIP-------- 145 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCC----CCCSTTGGGEEEECSCCTTTSC--------
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHH----HhhhcCCCCeEEEeccccccCC--------
Confidence 3678999999999999999999998 58999999 55433211 11222 135899999 887642
Q ss_pred CCcccEEEeCCCcc----------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 497 AHKITQVVMNLPND----------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 497 ~~~fD~VVmNpP~~----------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..+||.|++|.+.. ....|..+.++|+++ |++-|=.|..
T Consensus 146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG--------G~~v~kv~~~ 194 (305)
T 2p41_A 146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN--------TQFCVKVLNP 194 (305)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT--------CEEEEEESCC
T ss_pred cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCC--------CEEEEEeCCC
Confidence 35799999987532 114677788889886 4565545544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=83.57 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||+|.++..+++. +++|+++.+++.++++ +++++++|+.+.. . ..+.||.|
T Consensus 45 ~~~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~---~---~~~~fD~v 106 (219)
T 1vlm_A 45 LLPEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLP---L---KDESFDFA 106 (219)
T ss_dssp HCCSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCC---S---CTTCEEEE
T ss_pred hCCCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCC---C---CCCCeeEE
Confidence 345889999999999999999877 9999999999999887 3788999987642 1 24579999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++-.. ....++..+.++++++ |++.+.++..
T Consensus 107 ~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~ 142 (219)
T 1vlm_A 107 LMVTTICFVDDPERALKEAYRILKKG--------GYLIVGIVDR 142 (219)
T ss_dssp EEESCGGGSSCHHHHHHHHHHHEEEE--------EEEEEEEECS
T ss_pred EEcchHhhccCHHHHHHHHHHHcCCC--------cEEEEEEeCC
Confidence 986432 2357899999999986 5666655543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-06 Score=80.41 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=85.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.++..++ .+|+++|+++. ++.++++|+.+.. . +.+.||.|
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----------------~~~~~~~d~~~~~---~---~~~~fD~v 119 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR---NPVHCFDLASL----------------DPRVTVCDMAQVP---L---EDESVDVA 119 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------STTEEESCTTSCS---C---CTTCEEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------CceEEEeccccCC---C---CCCCEeEE
Confidence 4578899999999999998874 68999999997 2567889987632 1 24679999
Q ss_pred EeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCCCcE
Q 007525 504 VMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWM 580 (600)
Q Consensus 504 VmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~m 580 (600)
+++... ....++..+.++++++ |++.+.++...... .+.+...+.. .++..++....+...
T Consensus 120 ~~~~~l~~~~~~~~l~~~~~~L~~g--------G~l~i~~~~~~~~~----~~~~~~~l~~----~Gf~~~~~~~~~~~~ 183 (215)
T 2zfu_A 120 VFCLSLMGTNIRDFLEEANRVLKPG--------GLLKVAEVSSRFED----VRTFLRAVTK----LGFKIVSKDLTNSHF 183 (215)
T ss_dssp EEESCCCSSCHHHHHHHHHHHEEEE--------EEEEEEECGGGCSC----HHHHHHHHHH----TTEEEEEEECCSTTC
T ss_pred EEehhccccCHHHHHHHHHHhCCCC--------eEEEEEEcCCCCCC----HHHHHHHHHH----CCCEEEEEecCCCeE
Confidence 987542 3467899999999986 57777766543221 1223333332 234444444445566
Q ss_pred EEEEEEecc
Q 007525 581 LCASFVLPE 589 (600)
Q Consensus 581 ycvsFrlp~ 589 (600)
+++.++.+.
T Consensus 184 ~~~~~~k~~ 192 (215)
T 2zfu_A 184 FLFDFQKTG 192 (215)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEecC
Confidence 777788753
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-06 Score=87.65 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=72.7
Q ss_pred ecChhHHHHHHHHhcC---CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEE-EcC
Q 007525 409 WNSKLATERQRLLSGF---NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVF-NMD 483 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~l---~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i-~gD 483 (600)
|.+|-...-..+++.+ .+|.+|||+|||+|.|+..+++.|+ +|+|+|+++.+++++.++ . . ++..+ ..|
T Consensus 65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----~-~-rv~~~~~~n 138 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----D-D-RVRSMEQYN 138 (291)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT----C-T-TEEEECSCC
T ss_pred cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----C-c-ccceecccC
Confidence 4566544334455432 3578999999999999999999875 999999999999985432 1 1 23332 234
Q ss_pred hHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCC
Q 007525 484 GRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 484 are~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
++.+....+ +...||.|++|.-... ...|.++.++|+++
T Consensus 139 i~~l~~~~l---~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpG 178 (291)
T 3hp7_A 139 FRYAEPVDF---TEGLPSFASIDVSFISLNLILPALAKILVDG 178 (291)
T ss_dssp GGGCCGGGC---TTCCCSEEEECCSSSCGGGTHHHHHHHSCTT
T ss_pred ceecchhhC---CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcC
Confidence 443211101 1234999999876543 46889999999987
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-06 Score=86.27 Aligned_cols=105 Identities=18% Similarity=0.106 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHH
Q 007525 411 SKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 411 ~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~ 490 (600)
+-+..|-...+. +++|.+++|+.||.|..+..+++++++|+|+|.+|.|++.+++ ++. +++++++++..++-..
T Consensus 8 pVLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~ 81 (285)
T 1wg8_A 8 PVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRH 81 (285)
T ss_dssp CTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHH
T ss_pred hHHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHH
Confidence 444444333332 5688999999999999999999988899999999999999988 533 4699999999887543
Q ss_pred HHHhhcCCcccEEEeCCCcchHHHHHHHHHHhc
Q 007525 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk 523 (600)
+... ....+|.|++|+..++.++ +..-+.+.
T Consensus 82 L~~~-g~~~vDgIL~DLGvSS~Ql-d~~~RGFS 112 (285)
T 1wg8_A 82 LAAL-GVERVDGILADLGVSSFHL-DDPSRGFS 112 (285)
T ss_dssp HHHT-TCSCEEEEEEECSCCHHHH-HCGGGCCC
T ss_pred HHHc-CCCCcCEEEeCCccccccc-cccccCcc
Confidence 3221 1357999999999887664 65555544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=97.89 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=74.3
Q ss_pred CCeEEEEeeechHHH---HHHhhC-C-----------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHH
Q 007525 427 KDVVCDVFAGVGPIC---IPAAKI-V-----------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAM 491 (600)
Q Consensus 427 ge~VLDlfAGvG~Fa---IpaAkk-g-----------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l 491 (600)
+.+|+|+|||+|+++ +.|++. + .+|||||.||.|+..++.... |+++++|+++++|++++-.-.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 458999999999996 444432 2 399999999999988887765 999999999999999984210
Q ss_pred HHhhcCCcccEEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 492 FASQKAHKITQVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 492 ~~~~~~~~fD~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
..+..+++|+||..+... ..+.|+.+.+.|+++
T Consensus 489 -~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~ 527 (745)
T 3ua3_A 489 -KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPT 527 (745)
T ss_dssp -HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTT
T ss_pred -ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCC
Confidence 111257899999887753 347888888888775
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.7e-07 Score=90.23 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE-cChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~-gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.+|||+|||+|.|+..+++.|+ +|+|+|+++.+++.+++|... +.... .+++......+ ....+|.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~d~~ 107 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLADF---EQGRPSFT 107 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGGC---CSCCCSEE
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhHc---CcCCCCEE
Confidence 577999999999999999999985 999999999999987775432 22211 12211110000 01124555
Q ss_pred EeCCCcch-HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
.+|..... ..++.++.++|+++
T Consensus 108 ~~D~v~~~l~~~l~~i~rvLkpg 130 (232)
T 3opn_A 108 SIDVSFISLDLILPPLYEILEKN 130 (232)
T ss_dssp EECCSSSCGGGTHHHHHHHSCTT
T ss_pred EEEEEhhhHHHHHHHHHHhccCC
Confidence 55554432 56889999999987
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-06 Score=98.61 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=62.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-----CEEEEEeCcHHHHHHH--HHHHHHcCCCC---cEEEEEcChHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-----KRVYANDLNPYAVDYL--ERNSVLNKLEK---KIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-----~~V~AvDiNP~Ave~l--~eNaklNgl~n---rV~~i~gDare~l~~l~~ 493 (600)
..++.+|+|.+||+|.|.+.+++.. ..++|+|+++.+++.+ +.|+..|++.. ...+...|......
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~---- 394 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP---- 394 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG----
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc----
Confidence 3468899999999999999999753 3799999999999999 88888765532 13455566654210
Q ss_pred hhcCCcccEEEeCCCcc
Q 007525 494 SQKAHKITQVVMNLPND 510 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~ 510 (600)
.....||+||+|||+.
T Consensus 395 -~~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 395 -EDFANVSVVVMNPPYV 410 (878)
T ss_dssp -GGGTTEEEEEECCBCC
T ss_pred -cccCCCCEEEECCCcc
Confidence 0235799999999993
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-06 Score=91.23 Aligned_cols=97 Identities=5% Similarity=0.008 Sum_probs=70.5
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE-cChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~-gDare~l~~l~~~~ 495 (600)
.+++. +.++.+|||+|||.|.++..+++.|.+|+|+|+++.+++.++++ ++.....++. +++... . .
T Consensus 98 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l-~--~--- 167 (416)
T 4e2x_A 98 DFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDV-R--R--- 167 (416)
T ss_dssp HHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHH-H--H---
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhc-c--c---
Confidence 34444 35788999999999999999999999999999999999988876 4442111222 223222 2 1
Q ss_pred cCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
..++||+|+++-.- ....++..+.++|+++
T Consensus 168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lkpg 201 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPD 201 (416)
T ss_dssp HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEE
T ss_pred CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCC
Confidence 13689999986432 2468999999999986
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=79.72 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCCeEEEEeeec---hHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHH-----HHhh
Q 007525 426 FKDVVCDVFAGV---GPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAM-----FASQ 495 (600)
Q Consensus 426 ~ge~VLDlfAGv---G~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l-----~~~~ 495 (600)
....|||+|||+ |.++..+++. +.+|+++|++|.+++.+++++..+ ++++++++|+.+....+ ...-
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 347999999999 9988776664 579999999999999999988432 35999999997642100 0000
Q ss_pred cCCcccEEEeCC-----Cc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 496 KAHKITQVVMNL-----PN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 496 ~~~~fD~VVmNp-----P~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
....||.|+++. |. ....++..+.++|+++ +++.+.++...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG--------G~l~i~~~~~~ 200 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG--------SYLFMTSLVDT 200 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT--------CEEEEEEEBCS
T ss_pred CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC--------cEEEEEEecCc
Confidence 124789999864 32 2467899999999986 47776666653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-06 Score=81.59 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=74.7
Q ss_pred CCCCeEEEEeeechHHHHHHh----hC--CCEE--EEEeCcHHHHHHHHHHHHHc-CCCC-cEEEEEcChHHHHHHHHHh
Q 007525 425 NFKDVVCDVFAGVGPICIPAA----KI--VKRV--YANDLNPYAVDYLERNSVLN-KLEK-KIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaA----kk--g~~V--~AvDiNP~Ave~l~eNaklN-gl~n-rV~~i~gDare~l~~l~~~ 494 (600)
.++.+|||+|||+|.+++.++ .+ +..| +|+|.++.+++.+++++... ++.+ ++.+..+|+.++.......
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999998876433 22 3444 99999999999999998764 5554 2344577776654221100
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
...++||+|++.--- ....+|..+.++|+++ |++.+-.+.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~ 174 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN--------AKMLIIVVS 174 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE--------EEEEEEEEC
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC--------cEEEEEEec
Confidence 024689999986322 2357899999999987 566665544
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=88.20 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++ +.+++++|+ +.++. +++++..++.++|++..+|+.+.+ + .||
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~--------p-~~D 249 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV--------P-HAD 249 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC--------C-CCS
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC--------C-CCc
Confidence 567889999999999999999986 358999999 55554 555555567678999999996321 3 799
Q ss_pred EEEeCC-----Ccc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMNL-----PND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmNp-----P~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|++.- |.. ...+|..+.++++++ |++.+.++...+
T Consensus 250 ~v~~~~vlh~~~d~~~~~~L~~~~~~Lkpg--------G~l~i~e~~~~~ 291 (348)
T 3lst_A 250 VHVLKRILHNWGDEDSVRILTNCRRVMPAH--------GRVLVIDAVVPE 291 (348)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTCCTT--------CEEEEEECCBCS
T ss_pred EEEEehhccCCCHHHHHHHHHHHHHhcCCC--------CEEEEEEeccCC
Confidence 999843 221 257899999999986 578888776443
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.11 E-value=9.8e-07 Score=88.11 Aligned_cols=100 Identities=13% Similarity=0.002 Sum_probs=68.6
Q ss_pred CCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHc-----------------CCC------------C
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLN-----------------KLE------------K 475 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklN-----------------gl~------------n 475 (600)
++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.++++++.+ +.. .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 6789999999999977766654 679999999999999999876432 110 0
Q ss_pred cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc--------hHHHHHHHHHHhcCC
Q 007525 476 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND--------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 476 rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~--------a~eFLdaa~~lLk~~ 525 (600)
.+.++.+|+.+.+.......+.++||.|+++.-.. -..++..+.++|+++
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG 208 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 15677778876321000000134699999875432 235778888888886
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=82.23 Aligned_cols=147 Identities=10% Similarity=0.096 Sum_probs=99.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+....+|+|+|||+|.+++.++++ +.+++..|+ |.+++.+++++...+ .++|+++.+|.++. +...+|
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~--------~~~~~D 246 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD--------PLPEAD 246 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS--------CCCCCS
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC--------CCCCce
Confidence 456789999999999999999987 358899998 899999999987665 45799999998652 234579
Q ss_pred EEEe-----CCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHH---------------HHHHh
Q 007525 502 QVVM-----NLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERI---------------RIALV 560 (600)
Q Consensus 502 ~VVm-----NpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI---------------~~~L~ 560 (600)
.|+| |.|. .+...|..+.++++++ +.|-+.++.-.++...+..... ..+..
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pg--------g~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~ 318 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPG--------GGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYH 318 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTT--------CEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCC--------CEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 9887 4443 3467899999999886 5788887764333222222111 11122
Q ss_pred hcccceEEEEeEEecCCCcEEEEEEEec
Q 007525 561 EVAVNVEMRRVRLVAPGKWMLCASFVLP 588 (600)
Q Consensus 561 ~~~~~~~v~~VR~VAP~K~mycvsFrlp 588 (600)
..++..+++.|+-...+..+-+|..+..
T Consensus 319 ~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 319 MLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp HHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred HHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 2233445565655555556666666654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.3e-06 Score=84.42 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=47.6
Q ss_pred HHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC
Q 007525 419 RLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 473 (600)
Q Consensus 419 Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl 473 (600)
++++. ..+|++|||.|||+|+.++.|++.|.+++++|++|.+++.+++|++.|++
T Consensus 204 ~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 204 RIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 44444 46899999999999999999999999999999999999999999998875
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=81.75 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=80.6
Q ss_pred CCCCCeEEEEee------echHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEE-EEcChHHHHHHHHHh
Q 007525 424 FNFKDVVCDVFA------GVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEV-FNMDGRRFIDAMFAS 494 (600)
Q Consensus 424 l~~ge~VLDlfA------GvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~-i~gDare~l~~l~~~ 494 (600)
+.+|++|||+|| |.|. .+.+... +++|+|+|+++. +. ++++ +++|+.+..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~~~~------ 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCATVH------ 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGGGCC------
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccccCC------
Confidence 678999999999 5577 3333333 369999999998 23 3778 999998742
Q ss_pred hcCCcccEEEeCCCcc---------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHH
Q 007525 495 QKAHKITQVVMNLPND---------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIAL 559 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~---------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L 559 (600)
...+||.|+.|++.. ....+..+.++|+++ |++.+..|..... +.+...+
T Consensus 120 -~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG--------G~~v~~~~~~~~~------~~l~~~l 184 (290)
T 2xyq_A 120 -TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG--------GSIAVKITEHSWN------ADLYKLM 184 (290)
T ss_dssp -CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE--------EEEEEEECSSSCC------HHHHHHH
T ss_pred -ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC--------cEEEEEEeccCCH------HHHHHHH
Confidence 135799999986432 126788889999986 6777777765332 1233333
Q ss_pred hhcccceEEEEeEEe-----cCCCcEEEEEEEe
Q 007525 560 VEVAVNVEMRRVRLV-----APGKWMLCASFVL 587 (600)
Q Consensus 560 ~~~~~~~~v~~VR~V-----AP~K~mycvsFrl 587 (600)
.. .++..|+-+ ++..+.+|.-|.-
T Consensus 185 ~~----~GF~~v~~~asr~~s~e~~lv~~~~~~ 213 (290)
T 2xyq_A 185 GH----FSWWTAFVTNVNASSSEAFLIGANYLG 213 (290)
T ss_dssp TT----EEEEEEEEEGGGTTSSCEEEEEEEECS
T ss_pred HH----cCCcEEEEEEcCCCchheEEecCCccC
Confidence 32 334444444 3344566676664
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.7e-06 Score=92.89 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=82.1
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC---------------CCEEEEEeCcHHHHHHHHHHHH
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI---------------VKRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---------------g~~V~AvDiNP~Ave~l~eNak 469 (600)
-|+.|+...+- +++. ..+|++|+|.+||+|.|-+.+.+. ...++|+|+++.++..++-|+-
T Consensus 198 qfyTP~~Vv~l--mv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~ 275 (530)
T 3ufb_A 198 EFYTPRPVVRF--MVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL 275 (530)
T ss_dssp CCCCCHHHHHH--HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred eECCcHHHHHH--HHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence 36677755432 3333 457889999999999999988752 1369999999999999999999
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch--------------------HHHHHHHHHHhcC
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA--------------------TEFLDAFRGIYRD 524 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a--------------------~eFLdaa~~lLk~ 524 (600)
+.++.. ..+.++|...... .......+||+||+|||+.. ..|+..+...|+.
T Consensus 276 lhg~~~-~~I~~~dtL~~~~--~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 347 (530)
T 3ufb_A 276 LHGLEY-PRIDPENSLRFPL--REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKR 347 (530)
T ss_dssp HHTCSC-CEEECSCTTCSCG--GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCC
T ss_pred hcCCcc-ccccccccccCch--hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhh
Confidence 999975 5677888754311 00011347999999999842 2477777787874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-05 Score=75.76 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=76.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCC--CCcEEEEEcChHHH-------------
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKL--EKKIEVFNMDGRRF------------- 487 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl--~nrV~~i~gDare~------------- 487 (600)
+.+..+||++|| |+=++.+|+. +++|+++|.|++.++.+++|++.+++ .++|+++.+|+.+.
T Consensus 28 l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 28 YEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 456789999998 5778888886 68999999999999999999999998 77899999997543
Q ss_pred -HHHHH----HhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 488 -IDAMF----ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 488 -l~~l~----~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+..+. .....+.||.|++|=... ..++..++..++++
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k~-~~~~~~~l~~l~~G 147 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRFR-VGCALATAFSITRP 147 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSSH-HHHHHHHHHHCSSC
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCCc-hhHHHHHHHhcCCC
Confidence 22211 110136799999996543 46677778888875
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.00 E-value=9.3e-06 Score=82.61 Aligned_cols=54 Identities=30% Similarity=0.310 Sum_probs=47.6
Q ss_pred HHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 419 RLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 419 Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
++++. -.+|++|||+|||+|.+++.+++.|.+++|+|+++.+++.+++|++...
T Consensus 227 ~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 227 RLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 44443 3689999999999999999999999999999999999999999997653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.85 E-value=9.3e-06 Score=84.79 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=79.2
Q ss_pred CeEEEEeeechHHHHHHhhCC--C-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 428 DVVCDVFAGVGPICIPAAKIV--K-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg--~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+|+|+|||+|.+++.+.+.| . .|+|+|+++.|++..+.|.. + ..++++|+.++....+. ...+|+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~-~~~~~~Di~~~~~~~~~---~~~~D~l~ 73 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----H-TQLLAKTIEGITLEEFD---RLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECSCGGGCCHHHHH---HHCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----c-cccccCCHHHccHhHcC---cCCcCEEE
Confidence 479999999999999999887 3 69999999999999999963 2 34778999887533221 12589999
Q ss_pred eCCCcch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 505 MNLPNDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 505 mNpP~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
++||... . ..+..+.++++... ..|.+-+++.++.-.. ....+++...|.+.
T Consensus 74 ~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~-----~~P~~~~~ENV~~l~~-~~~~~~i~~~l~~~ 139 (343)
T 1g55_A 74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQ-----KLPKYILLENVKGFEV-SSTRDLLIQTIENC 139 (343)
T ss_dssp ECCC------------------CHHHHHHHHGGGCS-----SCCSEEEEEEETTGGG-SHHHHHHHHHHHHT
T ss_pred EcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhc-----CCCCEEEEeCCccccC-HHHHHHHHHHHHHC
Confidence 9999421 0 12234555555320 1256777888875221 13344555555443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.1e-05 Score=79.28 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=73.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++ +.+++++|+ |.+++.++++ .+++++.+|..+.+ + .. |
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-------p-~~-D 263 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGV-------P-KG-D 263 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCC-------C-CC-S
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCC-------C-CC-C
Confidence 346789999999999999999986 469999999 9888766532 35999999987622 1 22 9
Q ss_pred EEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|++.-.- ....+|..+.++++++ |++.++++...+
T Consensus 264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~~~ 305 (368)
T 3reo_A 264 AIFIKWICHDWSDEHCLKLLKNCYAALPDH--------GKVIVAEYILPP 305 (368)
T ss_dssp EEEEESCGGGBCHHHHHHHHHHHHHHSCTT--------CEEEEEECCCCS
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCCC--------CEEEEEEeccCC
Confidence 99884332 2347899999999986 588888876543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.1e-05 Score=82.12 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=80.9
Q ss_pred CeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH-Hhh-cCCcccEEE
Q 007525 428 DVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF-ASQ-KAHKITQVV 504 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~-~~~-~~~~fD~VV 504 (600)
-+|+|+|||+|.+++.+.+.|. .|+|+|+++.|++..+.|. .+ ..++++|+.++..... ... ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PR-SLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TT-SEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CC-CceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 4799999999999999999887 5789999999999999884 22 5788999987643211 100 135799999
Q ss_pred eCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhc
Q 007525 505 MNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEV 562 (600)
Q Consensus 505 mNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~ 562 (600)
++||... ...+..++++++.- -|.+-+.+.++.--. ...+.+.+. .|.+.
T Consensus 77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~-------~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~ 141 (376)
T 3g7u_A 77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSEL-------QPLFFLAENVPGIMQEKYSGIRNKAF-NLVSG 141 (376)
T ss_dssp ECCCCCTTC-------CHHHHHHHHHHHHHHHHH-------CCSEEEEEECTTTTCGGGHHHHHHHH-HHHHT
T ss_pred ecCCCCCcccccCCCCCCchHHHHHHHHHHHHHh-------CCCEEEEecchHhhccCcHHHHHHHH-HHHcC
Confidence 9999521 12233444444322 156888999885432 123444454 55443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.72 E-value=2e-05 Score=74.04 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=63.7
Q ss_pred HHhcCCCCCeEEEEeeechH-HHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLSGFNFKDVVCDVFAGVGP-ICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~-FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+.+.+.++.+|+|+|||.|+ .|..+|+ .|..|+|+|+||.|++ +++.|+++-...+.
T Consensus 29 I~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y----- 87 (153)
T 2k4m_A 29 IIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIY----- 87 (153)
T ss_dssp HHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHH-----
T ss_pred HHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCccccc-----
Confidence 33446677899999999995 9999997 8999999999999988 77788877543322
Q ss_pred CcccEE-EeCCCcchHHHHHHHHHHh
Q 007525 498 HKITQV-VMNLPNDATEFLDAFRGIY 522 (600)
Q Consensus 498 ~~fD~V-VmNpP~~a~eFLdaa~~lL 522 (600)
..||.| -+|||......+-.+.+..
T Consensus 88 ~~~DLIYsirPP~El~~~i~~lA~~v 113 (153)
T 2k4m_A 88 RGAALIYSIRPPAEIHSSLMRVADAV 113 (153)
T ss_dssp TTEEEEEEESCCTTTHHHHHHHHHHH
T ss_pred CCcCEEEEcCCCHHHHHHHHHHHHHc
Confidence 369999 7899997766655555544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=76.53 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++ +.+++++|+ |.+++.++++ .+|+++.+|+.+-. + .. |
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-------p-~~-D 261 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEV-------P-SG-D 261 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCC-------C-CC-S
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCC-------C-CC-C
Confidence 456789999999999999999985 469999999 8888765532 35999999987621 1 22 9
Q ss_pred EEEeCC-----Cc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 502 QVVMNL-----PN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 502 ~VVmNp-----P~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|++.- |. ....+|..+.++++++ |++-++++...+
T Consensus 262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg--------G~l~i~e~~~~~ 303 (364)
T 3p9c_A 262 TILMKWILHDWSDQHCATLLKNCYDALPAH--------GKVVLVQCILPV 303 (364)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTT--------CEEEEEECCBCS
T ss_pred EEEehHHhccCCHHHHHHHHHHHHHHcCCC--------CEEEEEEeccCC
Confidence 998833 32 2357899999999986 588888877543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=4e-05 Score=77.94 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCCeEEEEeeechH----HHHHHhhC------CCEEEEEeCcHHHHHHHHHHHH----H-------------------cC
Q 007525 426 FKDVVCDVFAGVGP----ICIPAAKI------VKRVYANDLNPYAVDYLERNSV----L-------------------NK 472 (600)
Q Consensus 426 ~ge~VLDlfAGvG~----FaIpaAkk------g~~V~AvDiNP~Ave~l~eNak----l-------------------Ng 472 (600)
++.+|+|+|||+|- +|+.++.. +.+|+|+|+|+.|++.|++|+- . ++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45689999999997 66666654 3599999999999999999861 0 11
Q ss_pred -------CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC------cchHHHHHHHHHHhcCC
Q 007525 473 -------LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP------NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 473 -------l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP------~~a~eFLdaa~~lLk~~ 525 (600)
+.++|.+.++|..+.. +. ..+.||.|++--- ..-...+..+.+.|+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~---~~--~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ---YN--VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 245 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS---CC--CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred ceeechhhcccCeEEecccCCCC---CC--cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence 1135899999987621 00 1357999998321 11246788888888876
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00018 Score=75.71 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=75.6
Q ss_pred cChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 410 NSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 410 n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
.+-+..|-...+. +++|.+++|+.+|.|..+..++++ + ++|+|+|.+|+|++.++ ++ ..+++++++++..+
T Consensus 42 ~pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 42 TTVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSA 115 (347)
T ss_dssp CCTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGG
T ss_pred ccccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHH
Confidence 3444444333222 578999999999999999999986 3 59999999999999884 33 24579999999988
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHh
Q 007525 487 FIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIY 522 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lL 522 (600)
+...+...+...++|.|++|+..++.++ |..-+.+
T Consensus 116 l~~~L~~~g~~~~vDgILfDLGVSS~Ql-D~~eRGF 150 (347)
T 3tka_A 116 LGEYVAERDLIGKIDGILLDLGVSSPQL-DDAERGF 150 (347)
T ss_dssp HHHHHHHTTCTTCEEEEEEECSCCHHHH-HCGGGCC
T ss_pred HHHHHHhcCCCCcccEEEECCccCHHHh-cCCCCCC
Confidence 7654432211236999999998876554 4444433
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00038 Score=71.84 Aligned_cols=97 Identities=9% Similarity=0.182 Sum_probs=79.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHH-HcC--C-CCcEEEEEcChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSV-LNK--L-EKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNak-lNg--l-~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
-....+||-+|.|.|..+-.+++. + .+|+.+||+|..++.+++-.. .|+ + +.+++++.+|++++++. ..
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-----~~ 155 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-----TS 155 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC-----SS
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh-----cc
Confidence 345679999999999999999986 3 599999999999999998763 232 2 34799999999999853 35
Q ss_pred CcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
.+||+||+|.+. .+.+|+..+.++|+++
T Consensus 156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~ 191 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPG 191 (294)
T ss_dssp CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEE
T ss_pred ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCC
Confidence 789999999764 2468999999999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=7.4e-05 Score=77.05 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=74.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.++..++++ +.+|+++|+ |.+++.+++ ..+ ++++.+|+.+.+ . .||
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~~~--------p-~~D 248 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNN-LTYVGGDMFTSI--------P-NAD 248 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTT-EEEEECCTTTCC--------C-CCS
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCC-cEEEeccccCCC--------C-Ccc
Confidence 456789999999999999999986 469999999 999887664 233 999999986521 2 399
Q ss_pred EEEeCCCc------chHHHHHHHHHHhcC---CCCCCCCCccEEEEEeccCC
Q 007525 502 QVVMNLPN------DATEFLDAFRGIYRD---RPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 ~VVmNpP~------~a~eFLdaa~~lLk~---~~~~g~~~~p~IHvY~F~k~ 544 (600)
.|++.-.- ....+|..+.+++++ + |++-+.++...
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~g--------G~l~i~e~~~~ 292 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKR--------GKVTIIDMVID 292 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCC--------CEEEEEECEEC
T ss_pred EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCC--------cEEEEEEeecC
Confidence 99985432 123789999999998 5 57777777643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.60 E-value=4e-05 Score=79.73 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=77.7
Q ss_pred CCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
+-+|+|+|||+|.+++.+.+.|. .|+|+|+++.|++..+.|... . . ++|+.++.... ...+|+|++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--~---~---~~Di~~~~~~~-----~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--K---P---EGDITQVNEKT-----IPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--C---C---BSCGGGSCGGG-----SCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--C---C---cCCHHHcCHhh-----CCCCCEEEE
Confidence 46899999999999999999886 699999999999999999632 1 1 68888764321 235899999
Q ss_pred CCCcch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhc
Q 007525 506 NLPNDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEV 562 (600)
Q Consensus 506 NpP~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~ 562 (600)
+||... . ..+..+.++++.. .|.+-+.+.++.-.. .+...+.+...|.+.
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~-------~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREK-------KPKVVFMENVKNFASHDNGNTLEVVKNTMNEL 143 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHH-------CCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHT
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhc-------cCcEEEEeCcHHHHhccccHHHHHHHHHHHhC
Confidence 999731 0 1233344444321 145778888774321 123444555555443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=79.17 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=72.7
Q ss_pred HHHhc-CCCCCeEEEEeee------chHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-
Q 007525 419 RLLSG-FNFKDVVCDVFAG------VGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF- 487 (600)
Q Consensus 419 Riv~~-l~~ge~VLDlfAG------vG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~- 487 (600)
++++. ..++.+|||+||| +|..++.++++ +++|+|+|+++.+. .. ..+++++++|+.+.
T Consensus 208 ~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-~~rI~fv~GDa~dlp 277 (419)
T 3sso_A 208 RHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-ELRIRTIQGDQNDAE 277 (419)
T ss_dssp HHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-BTTEEEEECCTTCHH
T ss_pred HHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-CCCcEEEEecccccc
Confidence 34433 4567899999999 88888888864 57999999999972 12 23599999999774
Q ss_pred -HHHHHHhhcCCcccEEEeCCCcc---hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 488 -IDAMFASQKAHKITQVVMNLPND---ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 488 -l~~l~~~~~~~~fD~VVmNpP~~---a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
...+... .++||.|++|--.. ...++.++.++|+++ |++-+-++.
T Consensus 278 f~~~l~~~--d~sFDlVisdgsH~~~d~~~aL~el~rvLKPG--------GvlVi~Dl~ 326 (419)
T 3sso_A 278 FLDRIARR--YGPFDIVIDDGSHINAHVRTSFAALFPHVRPG--------GLYVIEDMW 326 (419)
T ss_dssp HHHHHHHH--HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEE--------EEEEEECGG
T ss_pred hhhhhhcc--cCCccEEEECCcccchhHHHHHHHHHHhcCCC--------eEEEEEecc
Confidence 3222211 36899999985332 245778888888876 566664443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0003 Score=70.80 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=103.6
Q ss_pred eccEEEEEecCeeeecChhHH--HHHH------HHh-c---CCCCCeEEEEeeechHHHHHHhhC--------C------
Q 007525 395 FHHLSLFRCFDTIYWNSKLAT--ERQR------LLS-G---FNFKDVVCDVFAGVGPICIPAAKI--------V------ 448 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~Rl~t--Er~R------iv~-~---l~~ge~VLDlfAGvG~FaIpaAkk--------g------ 448 (600)
+.|.-|.-++...|++..-.- ++.. +-. . -.++.+|||+|+|+|+-++.+++. .
T Consensus 17 ~~gt~~s~~f~e~y~s~~~~l~E~~~vF~~~~~lp~r~~~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~ 96 (257)
T 2qy6_A 17 AEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEARFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQR 96 (257)
T ss_dssp TTCCEEETTTTEESSCTTTHHHHHHHHHHHHTTHHHHGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCE
T ss_pred CCCCEecCccCccccCCCCHHHHHHHHHHhccchHHHHHhcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcce
Confidence 345555566777888654322 2211 111 1 224578999999999988776542 1
Q ss_pred CEEEEEeCcH---HHH-----------HHHHHHHHHc----------CCC---CcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 449 KRVYANDLNP---YAV-----------DYLERNSVLN----------KLE---KKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 449 ~~V~AvDiNP---~Av-----------e~l~eNaklN----------gl~---nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..++++|..| +.+ +.++.+++.- .++ .+++++.+|+.+.++.+... ....||
T Consensus 97 l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~-~~~~~D 175 (257)
T 2qy6_A 97 LHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDS-LNQKVD 175 (257)
T ss_dssp EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGG-GTTCEE
T ss_pred eEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhcccc-cCCeEE
Confidence 3899999987 333 3556665530 121 24889999999987643110 013799
Q ss_pred EEEeCC--Ccc-----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEe
Q 007525 502 QVVMNL--PND-----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLV 574 (600)
Q Consensus 502 ~VVmNp--P~~-----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~V 574 (600)
.|++|+ |.. ..++++.+.++++++ +++..|+ .+ .. ++..|... +..+.++..+
T Consensus 176 ~iflD~fsp~~~p~lw~~~~l~~l~~~L~pG--------G~l~tys--aa----~~----vrr~L~~a--GF~v~~~~g~ 235 (257)
T 2qy6_A 176 AWFLDGFAPAKNPDMWTQNLFNAMARLARPG--------GTLATFT--SA----GF----VRRGLQEA--GFTMQKRKGF 235 (257)
T ss_dssp EEEECSSCTTTCGGGCCHHHHHHHHHHEEEE--------EEEEESC--CB----HH----HHHHHHHH--TEEEEEECCS
T ss_pred EEEECCCCcccChhhcCHHHHHHHHHHcCCC--------cEEEEEe--CC----HH----HHHHHHHC--CCEEEeCCCC
Confidence 999997 431 357999999999986 5777655 22 12 33344332 3455555555
Q ss_pred cCCCcEEEEEEEe
Q 007525 575 APGKWMLCASFVL 587 (600)
Q Consensus 575 AP~K~mycvsFrl 587 (600)
.....|.+.....
T Consensus 236 ~~kr~m~~a~~~~ 248 (257)
T 2qy6_A 236 GRKREMLCGVMEQ 248 (257)
T ss_dssp TTCCCEEEEEEC-
T ss_pred CCCCceEEEEecC
Confidence 5555677665443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0031 Score=67.20 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=76.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHH-cC--C----CCcEEEEEcChHHHHHHHHHhhcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVL-NK--L----EKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNakl-Ng--l----~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+..+||-+|.|-|..+-.+++.. .+|+.+||+|..++.+++-... ++ . ..+++++.+|+++++++..++ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~--~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--G 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--T
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--c
Confidence 56799999999999999999864 5999999999999999986421 11 1 135899999999999865432 4
Q ss_pred CcccEEEeCCCc--------------chHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPN--------------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~--------------~a~eFLdaa~~lLk~~ 525 (600)
.+||+||+|++. ...+|++.+.++|+++
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~ 324 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD 324 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC
Confidence 689999999642 1247788888888876
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=74.23 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=61.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCE---EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKR---VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~---V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
...+-+|+|+|||+|++++.+.+.|.. |+|+|+++.|++..+.|. .+ ..++++|+.++....... ...+
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~-~~~~~~DI~~i~~~~i~~--~~~~ 84 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QG-KIMYVGDVRSVTQKHIQE--WGPF 84 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TT-CEEEECCGGGCCHHHHHH--TCCC
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CC-CceeCCChHHccHHHhcc--cCCc
Confidence 345668999999999999999988853 699999999999998884 22 467899998875432321 2469
Q ss_pred cEEEeCCCc
Q 007525 501 TQVVMNLPN 509 (600)
Q Consensus 501 D~VVmNpP~ 509 (600)
|+++..||.
T Consensus 85 Dll~ggpPC 93 (295)
T 2qrv_A 85 DLVIGGSPC 93 (295)
T ss_dssp SEEEECCCC
T ss_pred CEEEecCCC
Confidence 999999997
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=74.40 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=73.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.++..+++++ .+++++|+ |.+++.+++ .. +++++.+|+.+.+ .. ||
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~~~--------~~-~D 269 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LS-GIEHVGGDMFASV--------PQ-GD 269 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CT-TEEEEECCTTTCC--------CC-EE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cC-CCEEEeCCcccCC--------CC-CC
Confidence 4567899999999999999999874 58999999 999887654 23 4999999997621 22 99
Q ss_pred EEEeCCCcc------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPND------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~~------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++.-.-. ...+|..+.++++++ |++-+.++..
T Consensus 270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pg--------G~l~i~e~~~ 309 (372)
T 1fp1_D 270 AMILKAVCHNWSDEKCIEFLSNCHKALSPN--------GKVIIVEFIL 309 (372)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence 999854321 237899999999986 5777776654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00065 Score=72.29 Aligned_cols=146 Identities=14% Similarity=0.043 Sum_probs=87.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+++|.+|+|+||..|+|+-.++++|++|+|||+.|-.- .+ .... +|+++++|+..+.. ....+|.|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~-----~l--~~~~-~V~~~~~d~~~~~~------~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ-----SL--MDTG-QVTWLREDGFKFRP------TRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH-----HH--HTTT-CEEEECSCTTTCCC------CSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh-----hh--ccCC-CeEEEeCccccccC------CCCCcCEE
Confidence 67899999999999999999999999999999865221 11 1223 49999999988642 23579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhcccceEEEEeEEecCCCcEE
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEVAVNVEMRRVRLVAPGKWML 581 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~my 581 (600)
++|.-......+....+.+..+... ..|.---+.-.... .......+.+.+....-...++ ++-..-++.=+
T Consensus 275 vsDm~~~p~~~~~l~~~wl~~~~~~-----~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l~-akhL~hdReEi 348 (375)
T 4auk_A 275 VCDMVEKPAKVAALMAQWLVNGWCR-----ETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQ-ARQLYHDREEV 348 (375)
T ss_dssp EECCSSCHHHHHHHHHHHHHTTSCS-----EEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE-EECCTTCSSEE
T ss_pred EEcCCCChHHhHHHHHHHHhccccc-----eEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhhe-ehhhccCCcEE
Confidence 9987555444555555555544111 23322222211100 0111223333333332223333 55444566667
Q ss_pred EEEEEecc
Q 007525 582 CASFVLPE 589 (600)
Q Consensus 582 cvsFrlp~ 589 (600)
++-.+.|.
T Consensus 349 TV~~rk~~ 356 (375)
T 4auk_A 349 TVHVRRIW 356 (375)
T ss_dssp EEEEEECC
T ss_pred EEEEEech
Confidence 77777664
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.34 E-value=4.6e-05 Score=78.71 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=55.3
Q ss_pred HHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH
Q 007525 419 RLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI 488 (600)
Q Consensus 419 Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l 488 (600)
++++. ..+|++|||.|||+|+.++.|.+.|.+.+++|++|.+++.++++++..+.. ...++.|+++..
T Consensus 244 ~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 244 FFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 44543 578999999999999999999999999999999999999999998766653 445555555543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=76.35 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=79.1
Q ss_pred CCeEEEEeeechHHHHHHhhCC---CEE-EEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV---KRV-YANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg---~~V-~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.-+|+|+|||+|++++.+.+.| ..| +|+|+++.|.+..+.|... . ++++|+.++...-+. ...+|+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i~---~~~~Di 79 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQIE---SLNCNT 79 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHHH---HTCCCE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHhc---cCCCCE
Confidence 4579999999999999998887 357 7999999999999999631 1 567888776433221 136899
Q ss_pred EEeCCCcchH----------------HHHHHHHH-HhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 503 VVMNLPNDAT----------------EFLDAFRG-IYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 503 VVmNpP~~a~----------------eFLdaa~~-lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
+++.||...- ..+..+.+ +++... ..|.+-+.+.++.-.. ....+.+.+.|.+.
T Consensus 80 l~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~-----~~P~~~~lENV~gl~~-~~~~~~i~~~l~~~ 150 (327)
T 3qv2_A 80 WFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLI-----NKPKHIFIENVPLFKE-SLVFKEIYNILIKN 150 (327)
T ss_dssp EEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCS-----SCCSEEEEEECGGGGG-SHHHHHHHHHHHHT
T ss_pred EEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhc-----cCCCEEEEEchhhhcC-hHHHHHHHHHHHhC
Confidence 9999995211 23344555 554310 0256778888875321 13344555555543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00027 Score=72.95 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=73.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.++..++++ +.+++++|+ |.+++.+++ ..+ ++++.+|+.+-+ ..||.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~~~---------~~~D~ 254 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NEN-LNFVGGDMFKSI---------PSADA 254 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSS-EEEEECCTTTCC---------CCCSE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCC-cEEEeCccCCCC---------CCceE
Confidence 46789999999999999999987 359999999 788876553 344 999999987621 24999
Q ss_pred EEeCCCcc------hHHHHHHHHHHhcC---CCCCCCCCccEEEEEeccCC
Q 007525 503 VVMNLPND------ATEFLDAFRGIYRD---RPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVmNpP~~------a~eFLdaa~~lLk~---~~~~g~~~~p~IHvY~F~k~ 544 (600)
|++.-.-. ...+|..+.+++++ + |++-+.++...
T Consensus 255 v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~g--------G~l~i~e~~~~ 297 (358)
T 1zg3_A 255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKD--------GKVIIIDISID 297 (358)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHTGGGGGG--------CEEEEEECEEC
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhCCCCCCC--------cEEEEEEeccC
Confidence 99865432 34789999999998 5 57777777643
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=74.82 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=91.5
Q ss_pred eEEEEeeechHHHHHHhhCCC---EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 429 VVCDVFAGVGPICIPAAKIVK---RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~---~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
+|+|+|||+|.+++.+.+.|. .|+|+|+++.|.+..+.|.. + ..++++|+.++...... ...+|++++
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~~DI~~~~~~~~~---~~~~D~l~g 75 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----E-TNLLNRNIQQLTPQVIK---KWNVDTILM 75 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECCCGGGCCHHHHH---HTTCCEEEE
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----C-CceeccccccCCHHHhc---cCCCCEEEe
Confidence 699999999999999888773 58999999999999998853 2 34678898877543221 136899999
Q ss_pred CCCcch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEe
Q 007525 506 NLPNDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRV 571 (600)
Q Consensus 506 NpP~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~V 571 (600)
.||... . ..+..+.++++.. .-|.+-+.+.++.-... ...+.+.+.|.+....+....+
T Consensus 76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~------~~P~~~vlENV~gl~~~-~~~~~i~~~l~~~GY~v~~~vl 148 (333)
T 4h0n_A 76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQL------DNVDYILMENVKGFENS-TVRNLFIDKLKECNFIYQEFLL 148 (333)
T ss_dssp CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGC------TTCCEEEEEECTTGGGS-HHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCcchhhhhhccCCcCcccccHHHHHHHHHHh------cCCCEEEEecchhhhhh-hHHHHHHHHHHhCCCeEEEEEe
Confidence 999631 0 1234455666532 01668888888853221 2334455555443322222211
Q ss_pred --EEe-cC--CCcEEEEEEEecccccc
Q 007525 572 --RLV-AP--GKWMLCASFVLPESVAF 593 (600)
Q Consensus 572 --R~V-AP--~K~mycvsFrlp~~v~~ 593 (600)
.+| .| .+..|++-++-...+.|
T Consensus 149 ~a~~~GvPQ~R~R~fiva~r~~~~~~f 175 (333)
T 4h0n_A 149 CPSTVGVPNSRLRYYCTARRNNLTWPF 175 (333)
T ss_dssp CTTTTTCSCCCCEEEEEEEETTSCCCS
T ss_pred cHHHcCCCccceEEEEEEEeCCCCCCC
Confidence 122 23 24556665655444333
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0002 Score=73.03 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=78.2
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||+|++++-+-+.|. -|+|+|+++.|++..+.|. . -+++++|+.++-.. .-..+|+++..|
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~-----~~~~~D~l~ggp 69 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSD-----EFPKCDGIIGGP 69 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGG-----GSCCCSEEECCC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHh-----hCCcccEEEecC
Confidence 699999999999999888886 6889999999999999884 2 26789999876422 134689999999
Q ss_pred Ccch--------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC--CchhHHHHHHHHHhhc
Q 007525 508 PNDA--------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD--PEFDFHERIRIALVEV 562 (600)
Q Consensus 508 P~~a--------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d--~~~di~eRI~~~L~~~ 562 (600)
|... -..+..+.++++.. -|.+-+.+.++.-. ..+...+.+...|.+.
T Consensus 70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~-------~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~ 133 (331)
T 3ubt_Y 70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQK-------KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNA 133 (331)
T ss_dssp CGGGTEETTEECCTTCGGGHHHHHHHHHHHHH-------CCSEEEEEECCGGGGCTTSHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCccCCCCchhHHHHHHHHHHhcc-------CCeEEEeeeecccccccccchhhhhhhhhccC
Confidence 9731 12334444444322 14577888887421 1223444455555443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00063 Score=69.65 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=71.3
Q ss_pred CCeEEEEeeec--hHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 427 KDVVCDVFAGV--GPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 427 ge~VLDlfAGv--G~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
-..|||+|||+ |.....+|.+ +++|+++|.+|.+++.++.++..+.. .+++++++|+++.-..+........||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhcccccccccC
Confidence 36899999998 4444554442 57999999999999999988765433 359999999988632110000012344
Q ss_pred -----EEEeCC-----Ccc--hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 502 -----QVVMNL-----PND--ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 -----~VVmNp-----P~~--a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.|+++- |.. ....+..+.+.|+++ +++-+-.++..
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG--------G~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG--------SYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT--------CEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC--------cEEEEEeccCC
Confidence 466653 222 246788888888876 46665556554
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00054 Score=73.09 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCCCCeEEEEeeechHHHHHHh-hC-C--CEEEEEeCcHHHHHHHHHHHHH--c-CCCCcEEEEEc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAA-KI-V--KRVYANDLNPYAVDYLERNSVL--N-KLEKKIEVFNM 482 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaA-kk-g--~~V~AvDiNP~Ave~l~eNakl--N-gl~nrV~~i~g 482 (600)
+.++++|+|+||++|.+++.+| +. + ++|+|+|-+|.+++.+++|++. | +.++++++++.
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 4789999999999999999988 43 3 6999999999999999999999 5 44134666553
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=72.92 Aligned_cols=79 Identities=22% Similarity=0.210 Sum_probs=60.0
Q ss_pred CCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHH-------------HHH
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID-------------AMF 492 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~-------------~l~ 492 (600)
.-+|+|+|||+|++++-+.+.|. -|+|+|+++.|++..+.|.... . ...++++|+.++.. .+.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--P-ATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--T-TTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--C-CcceeccchhhhhhccccccchhhHHhhhh
Confidence 34799999999999999988886 5999999999999999885211 1 24578899988751 111
Q ss_pred HhhcCCcccEEEeCCCcc
Q 007525 493 ASQKAHKITQVVMNLPND 510 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~ 510 (600)
. ....+|+++..||..
T Consensus 165 ~--~~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 165 Q--HIPEHDVLLAGFPCQ 180 (482)
T ss_dssp H--HSCCCSEEEEECCCC
T ss_pred h--cCCCCCEEEecCCCc
Confidence 1 134689999999973
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0023 Score=67.48 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=61.6
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHhhcC----
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFASQKA---- 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~~~~---- 497 (600)
+++.|+|+|.|.|.++..++.+ +.+|+|+|+++..+..|++.. . . ++++++++|+.++- ..+.+....
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~-~~l~ii~~D~l~~~~~~~l~~~~~l~~~~ 133 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--G-SPLQILKRDPYDWSTYSNLIDEERIFVPE 133 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--T-SSCEEECSCTTCHHHHHHHTTTTCSSCCC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--C-CCEEEEECCccchhhHHHhhccccccccc
Confidence 3689999999999999999976 569999999999999999876 2 2 35999999997762 333221000
Q ss_pred -------CcccEEEeCCCcch
Q 007525 498 -------HKITQVVMNLPNDA 511 (600)
Q Consensus 498 -------~~fD~VVmNpP~~a 511 (600)
...-.||.|+|+..
T Consensus 134 ~~~~~~~~~~~~vvaNLPYnI 154 (353)
T 1i4w_A 134 VQSSDHINDKFLTVANVTGEG 154 (353)
T ss_dssp CCCTTSEEEEEEEEEECCSTT
T ss_pred ccccccCCCceEEEEECCCch
Confidence 00127999999963
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00062 Score=70.54 Aligned_cols=55 Identities=20% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcH---HHHHHHHHHHHHcC
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNP---YAVDYLERNSVLNK 472 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP---~Ave~l~eNaklNg 472 (600)
+++++. ..+|++|||.|||+|+.++.|.+.|.+.+++|++| ..++.++++++..+
T Consensus 233 ~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 233 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 345544 56899999999999999999999999999999999 99999999987665
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00058 Score=62.69 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=60.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+++|+.|||++||. | ++|+++.+++.+++++.. ++++.++|+.+....-. ..++||.|
T Consensus 10 ~~~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~---~~~~fD~V 67 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-------------S-PVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAH---KESSFDII 67 (176)
T ss_dssp CCTTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCC---CSSCEEEE
T ss_pred CCCCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccC---CCCCEeEE
Confidence 78899999999986 2 399999999999988642 27899999987531000 24679999
Q ss_pred EeCCC-----cchHHHHHHHHHHhcCC
Q 007525 504 VMNLP-----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP-----~~a~eFLdaa~~lLk~~ 525 (600)
+++.. .....++.++.++|+++
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~Lkpg 94 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARILRPG 94 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHHEEEE
T ss_pred EECChhhhcccCHHHHHHHHHHHCCCC
Confidence 98531 22368999999999987
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0037 Score=64.01 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=78.9
Q ss_pred CCCeEEEEeeechHHHHHHhhC-------CCEEEEEeCcH--------------------------HHHHHHHHHHHHcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-------VKRVYANDLNP--------------------------YAVDYLERNSVLNK 472 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-------g~~V~AvDiNP--------------------------~Ave~l~eNaklNg 472 (600)
....||++|+..|+.++.+|.. +.+|+++|... ..++.+++|++..|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 3568999999999999987752 56899999742 14778999999999
Q ss_pred CC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 473 LE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 473 l~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
+. ++|+++.||+.+.+..+ +..+||.|.+|-=. ....+|+.+...++++ ++|-+..+
T Consensus 186 l~~~~I~li~Gda~etL~~~----~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pG--------GiIv~DD~ 245 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTA----PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVG--------GYVIVDDY 245 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTC----CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEE--------EEEEESSC
T ss_pred CCcCceEEEEeCHHHHHhhC----CCCCEEEEEEcCCccccHHHHHHHHHhhcCCC--------EEEEEcCC
Confidence 94 78999999999887542 24679999998633 1246677777777765 56666555
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0058 Score=69.92 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=45.0
Q ss_pred CCeEEEEeeechHHHHHHhhCC-------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHH
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV-------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID 489 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg-------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~ 489 (600)
.-+|+|||||.|++++-+.+.| .-|+|+|+++.|++..+.|. .+ ..+++.|+.++..
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~-~~~~~~di~~i~~ 275 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQ-TEVRNEKADEFLA 275 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TT-SEEEESCHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CC-CceecCcHHHhhh
Confidence 4579999999999998776654 26899999999999998873 22 5677888877654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0097 Score=61.64 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=66.0
Q ss_pred cChhHHHHHHHHh--cCCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHH------HHHHHHHHcCCCCcEEE
Q 007525 410 NSKLATERQRLLS--GFNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVD------YLERNSVLNKLEKKIEV 479 (600)
Q Consensus 410 n~Rl~tEr~Riv~--~l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave------~l~eNaklNgl~nrV~~ 479 (600)
.+|-..--..+.+ .+.++.+|+|+||+.|.|+-.+|.. |. +|+|+|+...--+ .+-. +-|.+
T Consensus 76 ~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w--------~lV~~ 147 (321)
T 3lkz_A 76 VSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGW--------NIVTM 147 (321)
T ss_dssp SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTG--------GGEEE
T ss_pred cchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCC--------cceEE
Confidence 3453332233443 3778999999999999999988875 54 7999999865211 1111 12788
Q ss_pred EEc-ChHHHHHHHHHhhcCCcccEEEeCCCcch----------HHHHHHHHHHhcCC
Q 007525 480 FNM-DGRRFIDAMFASQKAHKITQVVMNLPNDA----------TEFLDAFRGIYRDR 525 (600)
Q Consensus 480 i~g-Dare~l~~l~~~~~~~~fD~VVmNpP~~a----------~eFLdaa~~lLk~~ 525 (600)
+.+ |++... ...+|.|++|.-.++ ...|+-+...|+++
T Consensus 148 ~~~~Dv~~l~--------~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~ 196 (321)
T 3lkz_A 148 KSGVDVFYRP--------SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRG 196 (321)
T ss_dssp ECSCCTTSSC--------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeccCHhhCC--------CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccC
Confidence 877 875542 356999999986531 23566666777654
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0084 Score=70.98 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred CeEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh----------
Q 007525 428 DVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ---------- 495 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~---------- 495 (600)
-+++|+|||+|++++-+.+.|. .|+|+|+++.|.+..+.|. .+ ..++++|+.++.......+
T Consensus 541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~~di~~~~~~~lp 614 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PG-STVFTEDCNILLKLVMAGETTNSRGQRLP 614 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CC-CccccccHHHHhhhccchhhhhhhhhhcc
Confidence 4799999999999999988885 5889999999999998873 22 5788999988754322110
Q ss_pred cCCcccEEEeCCCc
Q 007525 496 KAHKITQVVMNLPN 509 (600)
Q Consensus 496 ~~~~fD~VVmNpP~ 509 (600)
..+.+|+|+..||.
T Consensus 615 ~~~~vDll~GGpPC 628 (1002)
T 3swr_A 615 QKGDVEMLCGGPPC 628 (1002)
T ss_dssp CTTTCSEEEECCCC
T ss_pred cCCCeeEEEEcCCC
Confidence 12358999999996
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.015 Score=58.72 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHh--cCCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-Ch
Q 007525 410 NSKLATERQRLLS--GFNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DG 484 (600)
Q Consensus 410 n~Rl~tEr~Riv~--~l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Da 484 (600)
.+|-..--..+.+ .+.++.+|+|+||+.|.|+-.++.. |. +|+|+|+.+.-.+.= ...+.-|. |.|++.++ |+
T Consensus 60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv 137 (267)
T 3p8z_A 60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDV 137 (267)
T ss_dssp SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCG
T ss_pred cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccce
Confidence 3553332234443 3788999999999999999988775 54 899999976533100 00011223 34999999 98
Q ss_pred HHHHHHHHHhhcCCcccEEEeCCCc
Q 007525 485 RRFIDAMFASQKAHKITQVVMNLPN 509 (600)
Q Consensus 485 re~l~~l~~~~~~~~fD~VVmNpP~ 509 (600)
+... ...+|.|++|.-.
T Consensus 138 ~~~~--------~~~~DtllcDIge 154 (267)
T 3p8z_A 138 FYLP--------PEKCDTLLCDIGE 154 (267)
T ss_dssp GGCC--------CCCCSEEEECCCC
T ss_pred eecC--------CccccEEEEecCC
Confidence 5432 4679999999743
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.026 Score=68.65 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=59.8
Q ss_pred CCeEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh--------h-
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS--------Q- 495 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~--------~- 495 (600)
.-+++|+|||.|++++-+.+.|. .|+|+|+++.|++..+.|. .+ ..++++|+.+++...... .
T Consensus 851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~gdi~~~~~~~l 924 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PG-TTVFTEDCNVLLKLVMAGEVTNSLGQRL 924 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CC-CcEeeccHHHHhHhhhccchhhhhhhhc
Confidence 35799999999999999988885 5899999999999999883 22 567889998876543200 0
Q ss_pred -cCCcccEEEeCCCc
Q 007525 496 -KAHKITQVVMNLPN 509 (600)
Q Consensus 496 -~~~~fD~VVmNpP~ 509 (600)
..+.+|+|+..||.
T Consensus 925 p~~~~vDvl~GGpPC 939 (1330)
T 3av4_A 925 PQKGDVEMLCGGPPC 939 (1330)
T ss_dssp CCTTTCSEEEECCCC
T ss_pred cccCccceEEecCCC
Confidence 01358999999997
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.069 Score=54.33 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=62.7
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC--C----CEEEEEe--CcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI--V----KRVYAND--LNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFA 493 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk--g----~~V~AvD--iNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~ 493 (600)
++++|.+|+||||+-|.++..|+++ . ..|+|+| +.|-.... .|+ +-+.+.++ |.++.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~-------~Gv-~~i~~~~G~Df~~~------ 135 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS-------YGW-NIVTMKSGVDVFYK------ 135 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS-------TTG-GGEEEECSCCGGGS------
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC-------CCc-eEEEeeccCCccCC------
Confidence 5889999999999999999999987 2 2566666 33211000 111 12455557 98872
Q ss_pred hhcCCcccEEEeCC-Ccch---------HHHHHHHHHHhcCCCCCCCCCcc-EEEEEeccC
Q 007525 494 SQKAHKITQVVMNL-PNDA---------TEFLDAFRGIYRDRPEDAKFTFP-KIHLYGFSK 543 (600)
Q Consensus 494 ~~~~~~fD~VVmNp-P~~a---------~eFLdaa~~lLk~~~~~g~~~~p-~IHvY~F~k 543 (600)
...++|+|++|. |.+. ...|+-+...|+++ | .+-|=.|..
T Consensus 136 --~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~g--------G~~FvvKVFqg 186 (269)
T 2px2_A 136 --PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRG--------PKEFCIKILCP 186 (269)
T ss_dssp --CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC--------CSEEEEEESCT
T ss_pred --CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcC--------CcEEEEEECCC
Confidence 245799999986 3332 13456666778776 4 566677773
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.14 Score=57.60 Aligned_cols=172 Identities=13% Similarity=0.143 Sum_probs=92.3
Q ss_pred EEeccEEEEEecCeeeecChhH-HHHHHH-----------HhcCCCCCeEEEEeeechHHHHHHhhC------------C
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLA-TERQRL-----------LSGFNFKDVVCDVFAGVGPICIPAAKI------------V 448 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~-tEr~Ri-----------v~~l~~ge~VLDlfAGvG~FaIpaAkk------------g 448 (600)
.+++|.-|.-.+..+|++.... .|-+.+ ...-++.-+|+|+|.|+|.-.+.+.+. .
T Consensus 13 ~~~~~~~~s~~f~d~y~s~~~~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~ 92 (689)
T 3pvc_A 13 WNEQGTPVSEQFGDIYFSNEDGLEETHHVFLKGNGFPARFASHPQQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATL 92 (689)
T ss_dssp ----------------CCSTTSHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSC
T ss_pred ECCCCcccCcccCCcccCCcCHHHhhHhhccccCCHHHHHhhCCCCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCC
Confidence 3456777777888888886432 222221 111123358999999999988876542 1
Q ss_pred --CEEEEEeCcHHHHHHHHHHHHH------------c-------C-----CCC---cEEEEEcChHHHHHHHHHhhcCCc
Q 007525 449 --KRVYANDLNPYAVDYLERNSVL------------N-------K-----LEK---KIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 449 --~~V~AvDiNP~Ave~l~eNakl------------N-------g-----l~n---rV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+++++|..|-..+.+++-... + | +++ .++.+.||+++.++++... ....
T Consensus 93 ~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~ 171 (689)
T 3pvc_A 93 RRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDS-LNNQ 171 (689)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGG-GTTC
T ss_pred ceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccc-cCCc
Confidence 3799999977666666652211 0 1 121 4778999999988653210 1357
Q ss_pred ccEEEeCCCcch-------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE
Q 007525 500 ITQVVMNLPNDA-------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR 572 (600)
Q Consensus 500 fD~VVmNpP~~a-------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR 572 (600)
+|.+++|+...+ .+++..+.++++++ ++ +..|+-. ..++..|.+. ++.+..++
T Consensus 172 ~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g--------~~--~~t~~~~--------~~vr~~l~~a--Gf~~~~~~ 231 (689)
T 3pvc_A 172 VDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPG--------GT--FSTFTAA--------GFVRRGLQQA--GFNVTKVK 231 (689)
T ss_dssp EEEEEECSSCC--CCTTCSHHHHHHHHHHEEEE--------EE--EEESCCC--------HHHHHHHHHT--TCEEEEEE
T ss_pred eeEEEECCCCCCCChhhhhHHHHHHHHHHhCCC--------CE--EEeccCc--------HHHHHHHHhC--CeEEEecc
Confidence 999999986533 57888888888765 23 3344332 1244444432 35566666
Q ss_pred EecCCCcEEEEEE
Q 007525 573 LVAPGKWMLCASF 585 (600)
Q Consensus 573 ~VAP~K~mycvsF 585 (600)
.+.+...|..-.+
T Consensus 232 ~~~~k~~~~~~~~ 244 (689)
T 3pvc_A 232 GFGQKREMLTGTL 244 (689)
T ss_dssp CSSSSCEEEEEEC
T ss_pred CCCcccccccccc
Confidence 6666656655443
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.078 Score=56.73 Aligned_cols=43 Identities=16% Similarity=0.022 Sum_probs=37.3
Q ss_pred CeEEEEeeechHHHHHHhhCC---CE----EEEEeCcHHHHHHHHHHHHH
Q 007525 428 DVVCDVFAGVGPICIPAAKIV---KR----VYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg---~~----V~AvDiNP~Ave~l~eNakl 470 (600)
-+|+|+|||+|++++.+-+.| .- |.|+|+++.|++..+.|...
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 379999999999999887766 24 89999999999999999753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=90.42 E-value=3.4 Score=42.16 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=61.6
Q ss_pred CCCCCeEEEEeee-chHHHHHHhh-CCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC---hHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD---GRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAk-kg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD---are~l~~l~~~~~~ 497 (600)
+++|++||-.||| +|.+++.+|+ .|+ +|+++|.+++-.+.+++ .|.+ .++..+ ..++...+.+.. .
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~-~ 240 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL-G 240 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH-T
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh-C
Confidence 7789999999887 4888888887 477 99999999998887753 4553 344443 334433332211 2
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|+|+-.-.. ...+..+.++++++
T Consensus 241 ~g~D~vid~~g~--~~~~~~~~~~l~~~ 266 (356)
T 1pl8_A 241 CKPEVTIECTGA--EASIQAGIYATRSG 266 (356)
T ss_dssp SCCSEEEECSCC--HHHHHHHHHHSCTT
T ss_pred CCCCEEEECCCC--hHHHHHHHHHhcCC
Confidence 468977754432 34567788888875
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=1.3 Score=44.76 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=62.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++||-.||| +|.+++.+|+. |++|+++|.+++..+.+++ .|.+ .++..+..++...+.+. .+.+|
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~--~g~~d 234 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKE--IGGAH 234 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH--HSSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHh--CCCCC
Confidence 6789999999886 58888888884 8899999999999888754 4543 23443322333222221 23689
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.|+-+-. ..+.++.+..+++++
T Consensus 235 ~vid~~g--~~~~~~~~~~~l~~~ 256 (340)
T 3s2e_A 235 GVLVTAV--SPKAFSQAIGMVRRG 256 (340)
T ss_dssp EEEESSC--CHHHHHHHHHHEEEE
T ss_pred EEEEeCC--CHHHHHHHHHHhccC
Confidence 8876543 345677888888865
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=89.68 E-value=0.48 Score=43.99 Aligned_cols=92 Identities=22% Similarity=0.179 Sum_probs=58.4
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+..|+ |+|..++.+++ .|++|+++|.+++..+.+++ .+.. .++..+-.++...+.+......+
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEeeCCcHHHHHHHHHHhCCCCC
Confidence 678999999984 77887777776 48899999999988776643 3432 22332212222222211112369
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-+-- ...+..+.++++++
T Consensus 109 D~vi~~~g---~~~~~~~~~~l~~~ 130 (198)
T 1pqw_A 109 DVVLNSLA---GEAIQRGVQILAPG 130 (198)
T ss_dssp EEEEECCC---THHHHHHHHTEEEE
T ss_pred eEEEECCc---hHHHHHHHHHhccC
Confidence 98887652 35667788888764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.39 Score=49.10 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=67.1
Q ss_pred cChhHHHHHHHHh--cCCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHH-cCCCCcEEEEEcCh
Q 007525 410 NSKLATERQRLLS--GFNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVL-NKLEKKIEVFNMDG 484 (600)
Q Consensus 410 n~Rl~tEr~Riv~--~l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNakl-Ngl~nrV~~i~gDa 484 (600)
.+|-...-..+.+ .++++.+|||+|||.|.|+-.++.+ +. .|+|+|+.-+... .... .....++..+.+++
T Consensus 56 rSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~----~pi~~~~~g~~ii~~~~~~ 131 (277)
T 3evf_A 56 VSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE----KPMNVQSLGWNIITFKDKT 131 (277)
T ss_dssp SSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC----CCCCCCBTTGGGEEEECSC
T ss_pred cccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc----cccccCcCCCCeEEEeccc
Confidence 4554432233433 3778899999999999999998876 43 7888888733210 0000 00000244456654
Q ss_pred HHHHHHHHHhhcCCcccEEEeCC-CcchH---------HHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 485 RRFIDAMFASQKAHKITQVVMNL-PNDAT---------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 485 re~l~~l~~~~~~~~fD~VVmNp-P~~a~---------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.. . . + ....+|.|++|. |.+.. ..|+.+.+.|+++. |.+-+=.|.+
T Consensus 132 dv-~-~-l---~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~-------G~FV~KVf~p 187 (277)
T 3evf_A 132 DI-H-R-L---EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGV-------DNFCVKVLAP 187 (277)
T ss_dssp CT-T-T-S---CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCC-------SEEEEEESCT
T ss_pred ee-h-h-c---CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCC-------CeEEEEecCC
Confidence 21 1 1 1 256899999987 33221 23566678888751 3455555553
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.62 Score=48.58 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCCCeEEEEeeec-hHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---Ch-HHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFAGV-GPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DG-RRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfAGv-G~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Da-re~l~~l~~~~~ 496 (600)
+++|++||-.|||. |.+++.+|+. |+ +|+++|.+++..+.+++ .|. .++.. |. .+.+..+. .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~---~ 251 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQIL---G 251 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHH---S
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHh---C
Confidence 67899999999874 8888888884 77 99999999998887653 343 23433 32 33333322 1
Q ss_pred CCcccEEEeCCCcch------------HHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDA------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a------------~eFLdaa~~lLk~~ 525 (600)
...+|+|+-.-.... ...+..+.++++++
T Consensus 252 g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 292 (398)
T 2dph_A 252 KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG 292 (398)
T ss_dssp SSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE
T ss_pred CCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC
Confidence 236898775433211 13567788888765
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.39 Score=49.22 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=61.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc--ChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM--DGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g--Dare~l~~l~~~~~~~~ 499 (600)
++++.+|||+|||.|.|+-.|+++ + ..|+++|+.......... ......++..+.. |..++ ...+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~---~~~~g~~ii~~~~~~dv~~l--------~~~~ 156 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM---RTTLGWNLIRFKDKTDVFNM--------EVIP 156 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTTGGGEEEECSCCGGGS--------CCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc---cccCCCceEEeeCCcchhhc--------CCCC
Confidence 788999999999999999999864 5 379999997542111100 0001112333332 43322 2568
Q ss_pred ccEEEeCC-CcchH---------HHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNL-PNDAT---------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNp-P~~a~---------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|+|++|. |.+.. ..|+-+...|+++. + |.+-|=.|..
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~-~-----G~Fv~KvF~p 204 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGN-Y-----TEFCIKVLCP 204 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHC-C-----CEEEEEESCC
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCC-C-----CcEEEEEecC
Confidence 99999986 33221 23555667777651 1 3566666653
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=88.75 E-value=2 Score=43.86 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=65.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~-V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~~~~ 497 (600)
+++|++||-.||| +|.+++.+|+. |++ |+++|.+++-.+.+++- ... +..+.. +..++...+.+...+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-----~~~-~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-----CPE-VVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-----CTT-CEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-----chh-cccccccccchHHHHHHHHHHhCC
Confidence 7789999988875 47788888874 775 99999999999988764 121 222322 223333333221123
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..+|+|+-.-. ....+..+.++++++ |++.++....
T Consensus 251 ~g~Dvvid~~g--~~~~~~~~~~~l~~~--------G~iv~~G~~~ 286 (363)
T 3m6i_A 251 IEPAVALECTG--VESSIAAAIWAVKFG--------GKVFVIGVGK 286 (363)
T ss_dssp CCCSEEEECSC--CHHHHHHHHHHSCTT--------CEEEECCCCC
T ss_pred CCCCEEEECCC--ChHHHHHHHHHhcCC--------CEEEEEccCC
Confidence 46897765432 234677888888875 4566655443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.21 E-value=1.2 Score=45.27 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=63.6
Q ss_pred CCCCCeEEEEeee--chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG--VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG--vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.||| +|..++.+|+. |++|+++|.+++..+.+++ .+.+ .+++....++...+.+......+
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lga~---~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----LGAA---YVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTTSCE
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----CCCc---EEEeCCcccHHHHHHHHhCCCCC
Confidence 7789999999875 89999988884 8899999999998888875 3443 23443222332222211123469
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|+|+-+-.. .....+..+++++ |++.++...
T Consensus 215 Dvvid~~g~---~~~~~~~~~l~~~--------G~iv~~G~~ 245 (340)
T 3gms_A 215 DAAIDSIGG---PDGNELAFSLRPN--------GHFLTIGLL 245 (340)
T ss_dssp EEEEESSCH---HHHHHHHHTEEEE--------EEEEECCCT
T ss_pred cEEEECCCC---hhHHHHHHHhcCC--------CEEEEEeec
Confidence 977765432 2233444677764 455555543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=1.9 Score=43.50 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.| .|+|..++.+|+. |++|++++.+++-.+.+++ .|.+ .++..+-.++...+.+......+
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHhCCCCc
Confidence 67899999998 4788888888874 8899999999998887754 3432 34443323333222211113468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-+-.. ..+..+..+++++
T Consensus 219 D~vid~~g~---~~~~~~~~~l~~~ 240 (334)
T 3qwb_A 219 DASFDSVGK---DTFEISLAALKRK 240 (334)
T ss_dssp EEEEECCGG---GGHHHHHHHEEEE
T ss_pred eEEEECCCh---HHHHHHHHHhccC
Confidence 987765543 4567777888765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=1.5 Score=44.12 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=60.2
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.+ .|+|..++.+|+. |++|++++.+++-.+.+++ .|.+ .++..+-.++...+.+......+
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHhCCCCc
Confidence 67899999887 4788888888874 8899999999999888764 3433 33443333333322221123468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-+-.. +.+..+..+++++
T Consensus 211 Dvvid~~g~---~~~~~~~~~l~~~ 232 (325)
T 3jyn_A 211 PVVYDGVGQ---DTWLTSLDSVAPR 232 (325)
T ss_dssp EEEEESSCG---GGHHHHHTTEEEE
T ss_pred eEEEECCCh---HHHHHHHHHhcCC
Confidence 977765433 4456777777764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=87.63 E-value=1.7 Score=44.69 Aligned_cols=98 Identities=14% Similarity=-0.008 Sum_probs=64.2
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~~~~~ 498 (600)
+++|++||-.||| +|.+++.+|+. |++|+++|.+++-.+.+++ .|.+ .++.. |..+.+..+. .+.
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~~---~g~ 256 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYALT---GDR 256 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH---TTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHHh---CCC
Confidence 6789999999876 47777777774 8899999999998888754 3553 23443 3333333332 234
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.+|+|+-.... ..+..+.++++++ |++-++...
T Consensus 257 g~D~vid~~g~---~~~~~~~~~l~~~--------G~iv~~G~~ 289 (363)
T 3uog_A 257 GADHILEIAGG---AGLGQSLKAVAPD--------GRISVIGVL 289 (363)
T ss_dssp CEEEEEEETTS---SCHHHHHHHEEEE--------EEEEEECCC
T ss_pred CceEEEECCCh---HHHHHHHHHhhcC--------CEEEEEecC
Confidence 69977754432 3456777888775 456655543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.58 E-value=1.3 Score=45.64 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=59.8
Q ss_pred CCCCCeEEEEeeec-hHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGV-GPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGv-G~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.+||. |.+++.+|+. |+ +|+++|.+++..+.+++ .|.+ .+++.+..++...+.+. ..+.+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~~-~~gg~ 259 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEI-TDGGV 259 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH-TTSCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC---EEecCCccCHHHHHHHh-cCCCC
Confidence 77899999999874 8888888874 77 79999999999888764 3443 23443222222222111 12368
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-.-. ....+..+.++++++
T Consensus 260 D~vid~~g--~~~~~~~~~~~l~~~ 282 (371)
T 1f8f_A 260 NFALESTG--SPEILKQGVDALGIL 282 (371)
T ss_dssp EEEEECSC--CHHHHHHHHHTEEEE
T ss_pred cEEEECCC--CHHHHHHHHHHHhcC
Confidence 97765432 235567888888765
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=0.79 Score=46.29 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE----cChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN----MDGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~----gDare~l~~l~~~~~ 496 (600)
+++|++|+-.|| |+|..++.+++ .|++|+++|.+++..+.+++ .+.. .++. .+..+.+....
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~---- 211 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSLEEALKKAS---- 211 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCHHHHHHHHC----
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCc---EEEecCCHHHHHHHHHHHh----
Confidence 678999999997 78888888877 58899999999988887732 2432 1222 23333333321
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.+.+|++|-+-.. ..+..+.++++++
T Consensus 212 ~~~~d~vi~~~g~---~~~~~~~~~l~~~ 237 (333)
T 1v3u_A 212 PDGYDCYFDNVGG---EFLNTVLSQMKDF 237 (333)
T ss_dssp TTCEEEEEESSCH---HHHHHHHTTEEEE
T ss_pred CCCCeEEEECCCh---HHHHHHHHHHhcC
Confidence 2469988876542 3467777777764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=87.31 E-value=2.4 Score=43.23 Aligned_cols=93 Identities=14% Similarity=0.251 Sum_probs=59.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.||| +|.+++.+|+. |+ +|+++|.+++..+.+++ .|.+ .++..+..++...+.+...+..+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHHcCCCCC
Confidence 6789999998876 47778888875 76 89999999998887765 3543 23433222333222211123469
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-.-.. ...+..+.++++++
T Consensus 237 D~v~d~~g~--~~~~~~~~~~l~~~ 259 (352)
T 3fpc_A 237 DKVVIAGGD--VHTFAQAVKMIKPG 259 (352)
T ss_dssp EEEEECSSC--TTHHHHHHHHEEEE
T ss_pred CEEEECCCC--hHHHHHHHHHHhcC
Confidence 977743322 24567778888765
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=87.26 E-value=0.61 Score=47.15 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=60.7
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.|| |+|..++.+|+. |++|++++.+++..+.+.+. .+.. .++.....++...+.+. ....+
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~~~-~~~~~ 219 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD---GAIDYKNEDLAAGLKRE-CPKGI 219 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS---EEEETTTSCHHHHHHHH-CTTCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC---EEEECCCHHHHHHHHHh-cCCCc
Confidence 788999999997 789988888874 88999999999988877332 3442 23333222333222211 13468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-+-- ...+..+..+++++
T Consensus 220 d~vi~~~g---~~~~~~~~~~l~~~ 241 (336)
T 4b7c_A 220 DVFFDNVG---GEILDTVLTRIAFK 241 (336)
T ss_dssp EEEEESSC---HHHHHHHHTTEEEE
T ss_pred eEEEECCC---cchHHHHHHHHhhC
Confidence 97776543 24677777777764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.07 E-value=4.2 Score=42.02 Aligned_cols=93 Identities=13% Similarity=0.007 Sum_probs=59.9
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC---hHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD---GRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD---are~l~~l~~~~~~ 497 (600)
+++|++||-.+|| +|.+++.+|+. | ++|++++.+++..+.+++ .|.+ .++..+ ..++...+.+....
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~g 265 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDITHG 265 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHHhCC
Confidence 6789999999865 67888888874 7 599999999998888763 4543 344443 33333332211112
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|+|+-.-.. ...+..+.++++++
T Consensus 266 ~g~Dvvid~~g~--~~~~~~~~~~l~~~ 291 (380)
T 1vj0_A 266 RGADFILEATGD--SRALLEGSELLRRG 291 (380)
T ss_dssp SCEEEEEECSSC--TTHHHHHHHHEEEE
T ss_pred CCCcEEEECCCC--HHHHHHHHHHHhcC
Confidence 368977755432 23456777888764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.67 E-value=4.9 Score=41.90 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=57.4
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~~~~ 497 (600)
+++|++||=.||| +|.+++.+|+. |+ +|+++|.+++-.+++++ .|.+ .+++. |..+.+..+. .+
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~i~~~t---~g 280 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD---HVIDPTKENFVEAVLDYT---NG 280 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHT---TT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEEcCCCCCHHHHHHHHh---CC
Confidence 6789999888874 47777777774 77 99999999999988764 3543 33443 3333333322 23
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHh----cCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIY----RDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lL----k~~ 525 (600)
..+|+|+-.-.. ....+..+..++ +++
T Consensus 281 ~g~D~vid~~g~-~~~~~~~~~~~l~~~~~~~ 311 (404)
T 3ip1_A 281 LGAKLFLEATGV-PQLVWPQIEEVIWRARGIN 311 (404)
T ss_dssp CCCSEEEECSSC-HHHHHHHHHHHHHHCSCCC
T ss_pred CCCCEEEECCCC-cHHHHHHHHHHHHhccCCC
Confidence 468977654332 223455666666 665
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.59 E-value=0.48 Score=48.60 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=35.2
Q ss_pred cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------------HHHHHHHHHHhcCC
Q 007525 476 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 476 rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------------~eFLdaa~~lLk~~ 525 (600)
...++++|+.+++..+ +.+++|.|++|||+.. .+.+..+.++|+++
T Consensus 14 ~~~ii~gD~~~~l~~l----~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~ 77 (323)
T 1boo_A 14 NGSMYIGDSLELLESF----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPD 77 (323)
T ss_dssp SEEEEESCHHHHGGGS----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CceEEeCcHHHHHhhC----CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCC
Confidence 5789999999887532 2568999999999832 34567778888875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=1.2 Score=45.76 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=61.1
Q ss_pred cCCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+++|++||-.| .|+|..++.+|+. |++|++++.+++..+.+++ .|.+ .++..+-.++...+.+. ....
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~-~~~g 231 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQE-YPEG 231 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH-CTTC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHh-cCCC
Confidence 367899999998 5789999988874 8899999999998887764 3443 23433222222222111 1346
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|+|+-.-.. ..+..+.++++++
T Consensus 232 ~D~vid~~g~---~~~~~~~~~l~~~ 254 (362)
T 2c0c_A 232 VDVVYESVGG---AMFDLAVDALATK 254 (362)
T ss_dssp EEEEEECSCT---HHHHHHHHHEEEE
T ss_pred CCEEEECCCH---HHHHHHHHHHhcC
Confidence 8987765432 4667788888765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=86.25 E-value=4 Score=40.66 Aligned_cols=79 Identities=16% Similarity=0.045 Sum_probs=56.5
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+. +..+.+. ...+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4778888887665 35566677899999999999999999988887764 488999998543 2222211 1135
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
+.|.+|-|
T Consensus 84 ~iDiLVNN 91 (254)
T 4fn4_A 84 RIDVLCNN 91 (254)
T ss_dssp CCCEEEEC
T ss_pred CCCEEEEC
Confidence 78988865
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.02 E-value=3.5 Score=41.95 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCCCCeEEEEeee-chHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc----ChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM----DGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g----Dare~l~~l~~~~~~ 497 (600)
+++|++||-.+|| +|.+++.+|+ .|++|+++|.+++..+.+++ .|.+ .+++. |..+.+.........
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~~~g 238 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIRSAIG 238 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhccccC
Confidence 6789999999876 4777888887 47889999999999888763 4554 23332 323333322210002
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|+|+-.... ...+..+.++++++
T Consensus 239 ~g~D~vid~~g~--~~~~~~~~~~l~~~ 264 (352)
T 1e3j_A 239 DLPNVTIDCSGN--EKCITIGINITRTG 264 (352)
T ss_dssp SCCSEEEECSCC--HHHHHHHHHHSCTT
T ss_pred CCCCEEEECCCC--HHHHHHHHHHHhcC
Confidence 468987765432 34567778888775
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.18 E-value=1.8 Score=44.15 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.|| |+|..++.+|+. |++|++++.+++..+.+++ .+.+ .++..+ .++...+.+......+
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS----VGAD---IVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---EEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEecCc-hhHHHHHHHHhCCCCc
Confidence 678999999986 789999888874 8899999999998887765 3443 234443 3333222221123369
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-.-.. ..+..+..+++++
T Consensus 229 Dvvid~~g~---~~~~~~~~~l~~~ 250 (342)
T 4eye_A 229 DMVVDPIGG---PAFDDAVRTLASE 250 (342)
T ss_dssp EEEEESCC-----CHHHHHHTEEEE
T ss_pred eEEEECCch---hHHHHHHHhhcCC
Confidence 987765432 3456777777764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.16 E-value=0.58 Score=46.22 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=33.3
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------------~eFLdaa~~lLk~~ 525 (600)
.+++++|+.+++..+. .+++|.|++|||+.. ...+..+.++|+++
T Consensus 5 ~~l~~gD~~~~l~~l~----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~ 67 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKD 67 (260)
T ss_dssp SSEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CeEEechHHHHHHhcc----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999887542 468999999999842 23456667777765
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.03 E-value=0.62 Score=47.99 Aligned_cols=46 Identities=9% Similarity=0.199 Sum_probs=34.7
Q ss_pred cEEEE-EcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCC
Q 007525 476 KIEVF-NMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 476 rV~~i-~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~ 525 (600)
...++ ++|+.+++..+ +.+++|.|++|||+.. ...|..+.++|+++
T Consensus 38 ~~~l~i~gD~l~~L~~l----~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~ 99 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKL----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPT 99 (319)
T ss_dssp EEEEEEECCHHHHHHTS----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEE
T ss_pred cceEEECCcHHHHHHhC----ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 36788 99999998653 2468999999999842 24556677888875
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.01 E-value=4.9 Score=41.09 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=59.6
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+-.|| |+|..++.+|+ .|++|++++.+++..+.+++ .+.. .++..+-.++...+.+......+
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHHHcCCCCc
Confidence 678999999996 78888888877 48899999999998886643 3433 23333222333222211113468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+-+-. ...+..+.++++++
T Consensus 241 D~vi~~~G---~~~~~~~~~~l~~~ 262 (351)
T 1yb5_A 241 DIIIEMLA---NVNLSKDLSLLSHG 262 (351)
T ss_dssp EEEEESCH---HHHHHHHHHHEEEE
T ss_pred EEEEECCC---hHHHHHHHHhccCC
Confidence 98876642 23566778888764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=84.91 E-value=0.75 Score=46.33 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=25.2
Q ss_pred cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 476 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 476 rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+++++++|+.+++..+ +.++||+|+.|||+.
T Consensus 21 ~~~i~~gD~~~~l~~l----~~~s~DlIvtdPPY~ 51 (297)
T 2zig_A 21 VHRLHVGDAREVLASF----PEASVHLVVTSPPYW 51 (297)
T ss_dssp CEEEEESCHHHHHTTS----CTTCEEEEEECCCCC
T ss_pred CCEEEECcHHHHHhhC----CCCceeEEEECCCCC
Confidence 4799999999987542 246899999999984
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=84.81 E-value=0.9 Score=46.00 Aligned_cols=89 Identities=21% Similarity=0.146 Sum_probs=60.3
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc----ChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM----DGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g----Dare~l~~l~~~~~ 496 (600)
+++|++||-.|| |+|..++.+|+ .|++|++++.+++..+.+++. .|.. .++.. |..+.+..+.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~~~~~~~~---- 222 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAFNYKEESDLTAALKRCF---- 222 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEEETTSCSCSHHHHHHHC----
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEEecCCHHHHHHHHHHHh----
Confidence 678999999997 78998888887 488999999999888877532 2432 22331 3333343321
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...+|+|+-+-.. ..+..+.++++++
T Consensus 223 ~~~~d~vi~~~g~---~~~~~~~~~l~~~ 248 (345)
T 2j3h_A 223 PNGIDIYFENVGG---KMLDAVLVNMNMH 248 (345)
T ss_dssp TTCEEEEEESSCH---HHHHHHHTTEEEE
T ss_pred CCCCcEEEECCCH---HHHHHHHHHHhcC
Confidence 2468988776532 4667777777764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.81 E-value=2.6 Score=42.34 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=59.9
Q ss_pred CCCCCeEEEEe--eechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+-.| .|+|..++.+++ .|++|+++|.+++..+.+++ .+.. .++..+-.++...+.+......+
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEECCCccHHHHHHHHhCCCCc
Confidence 67899999998 578888888777 48899999999998888765 2432 23332222232222211112468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.||-+-. .+.+..+.++++++
T Consensus 211 D~vi~~~g---~~~~~~~~~~l~~~ 232 (327)
T 1qor_A 211 RVVYDSVG---RDTWERSLDCLQRR 232 (327)
T ss_dssp EEEEECSC---GGGHHHHHHTEEEE
T ss_pred eEEEECCc---hHHHHHHHHHhcCC
Confidence 98887654 24567777778764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=3.8 Score=41.46 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=60.4
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc--ChHHHHHHHHHhhcC
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM--DGRRFIDAMFASQKA 497 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g--Dare~l~~l~~~~~~ 497 (600)
.+++|++|+-.+|| +|.+++.+|+. +.+|+++|.+++-.+.+++ .|.+. ++.. |..+.+.++. ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~v~~~t---~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA---AVKSGAGAADAIRELT---GG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE---EEECSTTHHHHHHHHH---GG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcCCCcHHHHHHHHh---CC
Confidence 47789999998876 47888888874 5799999999999888764 45542 3333 3333333322 13
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|+|+-.-. ....++.+..+++++
T Consensus 238 ~g~d~v~d~~G--~~~~~~~~~~~l~~~ 263 (345)
T 3jv7_A 238 QGATAVFDFVG--AQSTIDTAQQVVAVD 263 (345)
T ss_dssp GCEEEEEESSC--CHHHHHHHHHHEEEE
T ss_pred CCCeEEEECCC--CHHHHHHHHHHHhcC
Confidence 36886665432 234678888888865
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=83.89 E-value=1.4 Score=45.66 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh--hcCC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS--QKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~--~~~~ 498 (600)
+++|++||-.||| +|.+++.+|+. |+ +|+++|.+++..+.+++ .|.+ .+++....++...+.+. ...+
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~i~~~~~~~~g 252 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---ATVDPSAGDVVEAIAGPVGLVPG 252 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTSSCHHHHHHSTTSSSTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEECCCCcCHHHHHHhhhhccCC
Confidence 7889999998875 37777777774 77 99999999999887765 4554 23332222222222210 0123
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.+|+|+-.- . ....+..+.++++++ |++.++...
T Consensus 253 g~Dvvid~~-G-~~~~~~~~~~~l~~~--------G~vv~~G~~ 286 (370)
T 4ej6_A 253 GVDVVIECA-G-VAETVKQSTRLAKAG--------GTVVILGVL 286 (370)
T ss_dssp CEEEEEECS-C-CHHHHHHHHHHEEEE--------EEEEECSCC
T ss_pred CCCEEEECC-C-CHHHHHHHHHHhccC--------CEEEEEecc
Confidence 689766432 2 245678888888875 456555543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.59 E-value=1.3 Score=45.12 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=59.8
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.|+ |+|..++.+|+ .|++|++++.+++..+.+++ .+.+ .++..+-.++...+.+......+
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGAD---ETVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS---EEEETTSTTHHHHHHHHTTTTCE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEEcCCcccHHHHHHHHhCCCCc
Confidence 678999999998 78999988887 48899999999999888764 2433 23333222222222111112468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+-+-.. +.+..+.++++++
T Consensus 237 d~vi~~~g~---~~~~~~~~~l~~~ 258 (343)
T 2eih_A 237 DKVVDHTGA---LYFEGVIKATANG 258 (343)
T ss_dssp EEEEESSCS---SSHHHHHHHEEEE
T ss_pred eEEEECCCH---HHHHHHHHhhccC
Confidence 988876542 2456677777654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.11 E-value=2.2 Score=43.98 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=59.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE-----cChHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-----MDGRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~-----gDare~l~~l~~~~ 495 (600)
+++|++||-.||| +|.+++.+|+. |+ +|+++|.+++-.+.+++ .|.+ .++. .|..+.+..+.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~~--- 260 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIVDLT--- 260 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHHHHT---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHHHhc---
Confidence 6789999999886 67888888875 77 89999999998887653 4543 2332 23344444332
Q ss_pred cCCcccEEEeCCCcchHHHHHHHHHHhcC
Q 007525 496 KAHKITQVVMNLPNDATEFLDAFRGIYRD 524 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a~eFLdaa~~lLk~ 524 (600)
.+.+|+|+-.-. ....++.+.+++++
T Consensus 261 -~gg~D~vid~~g--~~~~~~~~~~~l~~ 286 (378)
T 3uko_A 261 -DGGVDYSFECIG--NVSVMRAALECCHK 286 (378)
T ss_dssp -TSCBSEEEECSC--CHHHHHHHHHTBCT
T ss_pred -CCCCCEEEECCC--CHHHHHHHHHHhhc
Confidence 237997765432 23567788888886
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=83.01 E-value=2.7 Score=42.68 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=59.0
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHhhcC
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFASQKA 497 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~~~~ 497 (600)
.+++|++||-.|+| +|..++.+|+ .|++|+++|.+++..+.+++ .|.+ .++.. |..+.+.++.
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~~----- 228 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV----- 228 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH-----
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHHh-----
Confidence 37789999999885 6788888777 47899999999999887753 3443 22322 2222232221
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|+|+-.-.. ...+..+.++++++
T Consensus 229 ~~~d~vid~~g~--~~~~~~~~~~l~~~ 254 (339)
T 1rjw_A 229 GGVHAAVVTAVS--KPAFQSAYNSIRRG 254 (339)
T ss_dssp SSEEEEEESSCC--HHHHHHHHHHEEEE
T ss_pred CCCCEEEECCCC--HHHHHHHHHHhhcC
Confidence 368988765432 34567778888764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.92 E-value=2 Score=43.86 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.+ .|+|..++.+|+. |++|++++.+++..+.+++ .+.+ .++..+..++...+.+.. ...+
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~~~~~-~~g~ 236 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGAK---RGINYRSEDFAAVIKAET-GQGV 236 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH-SSCE
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC---EEEeCCchHHHHHHHHHh-CCCc
Confidence 67899999874 4688888888874 8899999999999988875 3443 234433323322222111 4569
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-.-.. ..+..+..+++++
T Consensus 237 Dvvid~~g~---~~~~~~~~~l~~~ 258 (353)
T 4dup_A 237 DIILDMIGA---AYFERNIASLAKD 258 (353)
T ss_dssp EEEEESCCG---GGHHHHHHTEEEE
T ss_pred eEEEECCCH---HHHHHHHHHhccC
Confidence 987766543 2456677777764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=82.76 E-value=5.5 Score=40.10 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCCCeEEEEeeec-hHHHHHHhh-C-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGV-GPICIPAAK-I-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGv-G~FaIpaAk-k-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+=.|||. |.+++.+|+ . |++|+++|.+++-.+.+++ .+.+.-+..-..|..+.+.++. ....+
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t---~g~g~ 233 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT---GGLGV 233 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT---TSSCE
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc---CCCCc
Confidence 67899999998874 566666665 3 6799999999987766543 4544222222345555444432 23457
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.++.+... ...+..+..+++++
T Consensus 234 d~~~~~~~~--~~~~~~~~~~l~~~ 256 (348)
T 4eez_A 234 QSAIVCAVA--RIAFEQAVASLKPM 256 (348)
T ss_dssp EEEEECCSC--HHHHHHHHHTEEEE
T ss_pred eEEEEeccC--cchhheeheeecCC
Confidence 777776543 34567777888765
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=82.64 E-value=1.7 Score=44.94 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=78.4
Q ss_pred CeEEEEeeechHHHHHHhh-----C-CC--EEEEEeCcH--------HHHHHHHHHHHHc--CC-CC--cEEEEEcChHH
Q 007525 428 DVVCDVFAGVGPICIPAAK-----I-VK--RVYANDLNP--------YAVDYLERNSVLN--KL-EK--KIEVFNMDGRR 486 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAk-----k-g~--~V~AvDiNP--------~Ave~l~eNaklN--gl-~n--rV~~i~gDare 486 (600)
-+|+|+|-|+|.-++.+.. . .. ..+++|-.| +.+..+.+.+..+ .. .+ ..+++.||+++
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 4699999999986554332 1 23 567777532 1122222211111 01 11 25688999999
Q ss_pred HHHHHHHhhcCCcccEEEeCC--Ccc-----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHH
Q 007525 487 FIDAMFASQKAHKITQVVMNL--PND-----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIAL 559 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNp--P~~-----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L 559 (600)
.+.++. ...+|.|.+|. |.. ..+++..+.++++++ +++--| +.+. .|+..|
T Consensus 178 ~l~~l~----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pg--------g~laTY--taag--------~VRR~L 235 (308)
T 3vyw_A 178 RIKEVE----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEK--------GYWVSY--SSSL--------SVRKSL 235 (308)
T ss_dssp HGGGCC----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEE--------EEEEES--CCCH--------HHHHHH
T ss_pred HHhhhc----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCC--------cEEEEE--eCcH--------HHHHHH
Confidence 886531 34799999997 332 247888888888875 455444 4331 244455
Q ss_pred hhcccceEEEEeEEecCCCcEEEEEEE
Q 007525 560 VEVAVNVEMRRVRLVAPGKWMLCASFV 586 (600)
Q Consensus 560 ~~~~~~~~v~~VR~VAP~K~mycvsFr 586 (600)
.+. ++.+.++.-+.....|.+.++.
T Consensus 236 ~~a--GF~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 236 LTL--GFKVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp HHT--TCEEEEEECC---CEEEEEESS
T ss_pred HHC--CCEEEecCCCCCCCceeEEecC
Confidence 443 4677777776655678887764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.37 E-value=1.6 Score=44.40 Aligned_cols=89 Identities=16% Similarity=0.019 Sum_probs=59.4
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE----cChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN----MDGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~----gDare~l~~l~~~~~ 496 (600)
+++|++||-.|| |+|..++.+|+ .|++|+++|.+++..+.+++ .+.. .++. .+..+.+..+. .
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~---~ 236 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIVGAVLKAT---D 236 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHHHHHHHHH---T
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHHHHHHHHh---C
Confidence 678999999998 78988888887 58899999999988776654 3443 2232 23333343322 1
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
. .+|+|+-+-.. ...+..+.++++++
T Consensus 237 ~-~~D~vi~~~g~--~~~~~~~~~~l~~~ 262 (347)
T 2hcy_A 237 G-GAHGVINVSVS--EAAIEASTRYVRAN 262 (347)
T ss_dssp S-CEEEEEECSSC--HHHHHHHTTSEEEE
T ss_pred C-CCCEEEECCCc--HHHHHHHHHHHhcC
Confidence 2 68988876532 34566777777654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=81.67 E-value=2 Score=43.30 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+-.|| |+|..++.+++ .|++|++++.+++..+.+++ .+.+ .++..+-.++...+.+......+
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK----LGCH---HTINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEECCCHHHHHHHHHHhCCCCC
Confidence 678999999984 78888888776 48899999999988887764 2433 23333222222222111113468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-+-.. ..+..+.++++++
T Consensus 216 d~vi~~~g~---~~~~~~~~~l~~~ 237 (333)
T 1wly_A 216 DVVYDSIGK---DTLQKSLDCLRPR 237 (333)
T ss_dssp EEEEECSCT---TTHHHHHHTEEEE
T ss_pred eEEEECCcH---HHHHHHHHhhccC
Confidence 988866543 4567777777764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=81.39 E-value=0.95 Score=47.13 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=62.2
Q ss_pred CCCCCeEEEEee------echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA------GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA------GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+..|++|||+|| --|.+.+.-.. .|+.|+++|++|-.. ..+ .++++|+.+.. .
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~-------~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVH-------T 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEE-------E
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEccccccc-------c
Confidence 567999999998 44554332111 246999999998542 222 45999976632 2
Q ss_pred CCcccEEEeCC-Cc-c-------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 497 AHKITQVVMNL-PN-D-------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 497 ~~~fD~VVmNp-P~-~-------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
..+||+|+.|. |. + ....++-+...|+++ |.+-+=.|..+.
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpG--------GsFvVKVFQGsg 222 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG--------GSIAVKITEHSW 222 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEE--------EEEEEEECSSSC
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCC--------CEEEEEEecCCC
Confidence 47899999875 22 1 123456677778776 577788887665
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=80.88 E-value=5.1 Score=39.08 Aligned_cols=80 Identities=8% Similarity=-0.010 Sum_probs=55.2
Q ss_pred CCCeEEEEee----ech-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFA----GVG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfA----GvG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
+|+++|=-|+ |+| .++..+|+.|++|+.++.+++..+.+.+-++..+-. ++.++.+|+.+. +..+++. ..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQP-EAHLYQIDVQSDEEVINGFEQIGKD 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCS-SCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5788888884 566 467777888999999999998888887766554332 478899997543 2222211 11
Q ss_pred CCcccEEEeC
Q 007525 497 AHKITQVVMN 506 (600)
Q Consensus 497 ~~~fD~VVmN 506 (600)
.+..|.+|-|
T Consensus 84 ~G~iD~lvnn 93 (256)
T 4fs3_A 84 VGNIDGVYHS 93 (256)
T ss_dssp HCCCSEEEEC
T ss_pred hCCCCEEEec
Confidence 3578988866
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.65 E-value=5.2 Score=39.82 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.|.+++=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.+...+. ++.++.+|+.+. +..+.+. ...+
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 5777777776655 35556667799999999999999988888877764 488889997543 2222211 1246
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
+.|.+|-|
T Consensus 86 ~iDiLVNN 93 (255)
T 4g81_D 86 HVDILINN 93 (255)
T ss_dssp CCCEEEEC
T ss_pred CCcEEEEC
Confidence 78988865
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=80.43 E-value=8.4 Score=37.09 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCeEEEEee-e--ch-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFA-G--VG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfA-G--vG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+||=.|+ | +| .++..++++|++|+.++.+++..+.+.+.++..+-. ++.++.+|..+. +..+.+. ...
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLG-RVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCC-ceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 4677777776 4 55 355666778999999999999988888777554433 599999998653 2222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|++|.|-
T Consensus 100 g~id~li~~A 109 (266)
T 3o38_A 100 GRLDVLVNNA 109 (266)
T ss_dssp SCCCEEEECC
T ss_pred CCCcEEEECC
Confidence 4689988763
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.43 E-value=14 Score=35.73 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=54.8
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.|.++|=.|++.| .++..+++.|++|+.++.+++..+.+.+.+...+. ++.++.+|..+. +..+.+. ...+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR--RALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4677777776443 34555566799999999999999988888776653 488999998653 2222211 1135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.|-
T Consensus 88 ~id~lv~nA 96 (264)
T 3ucx_A 88 RVDVVINNA 96 (264)
T ss_dssp CCSEEEECC
T ss_pred CCcEEEECC
Confidence 789998764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=80.34 E-value=5.6 Score=40.36 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=57.6
Q ss_pred CCCCCeEEEEeee-chHHHHHHhh-CCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAk-kg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~~~~ 497 (600)
+ +|++||-.||| +|.+++.+|+ .|+ +|+++|.+++..+.+++ .|.+ .++.. |..+.+.++. ..
T Consensus 166 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~---~g 234 (348)
T 2d8a_A 166 I-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDIT---DG 234 (348)
T ss_dssp C-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHT---TT
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHc---CC
Confidence 5 89999999885 5777777777 477 89999999998887763 3443 23333 2333333221 12
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|+|+-.-.. ...+..+.++++++
T Consensus 235 ~g~D~vid~~g~--~~~~~~~~~~l~~~ 260 (348)
T 2d8a_A 235 NGVDVFLEFSGA--PKALEQGLQAVTPA 260 (348)
T ss_dssp SCEEEEEECSCC--HHHHHHHHHHEEEE
T ss_pred CCCCEEEECCCC--HHHHHHHHHHHhcC
Confidence 368987765432 34567777888764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=80.21 E-value=4.2 Score=35.87 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=47.4
Q ss_pred CeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCccc
Q 007525 428 DVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKIT 501 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~fD 501 (600)
+.|+=+ |.|.++..+|+ .|..|+++|.|++.++.+++ .+ +.++.+|+.+. +... ....+|
T Consensus 8 ~~viIi--G~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a----~i~~ad 73 (140)
T 3fwz_A 8 NHALLV--GYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA----HLECAK 73 (140)
T ss_dssp SCEEEE--CCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT----TGGGCS
T ss_pred CCEEEE--CcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc----CcccCC
Confidence 345444 55777776665 47899999999999887764 22 56788998653 3221 124689
Q ss_pred EEEeCCCcch
Q 007525 502 QVVMNLPNDA 511 (600)
Q Consensus 502 ~VVmNpP~~a 511 (600)
.||.-.|...
T Consensus 74 ~vi~~~~~~~ 83 (140)
T 3fwz_A 74 WLILTIPNGY 83 (140)
T ss_dssp EEEECCSCHH
T ss_pred EEEEECCChH
Confidence 9998877653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 600 | ||||
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 8e-48 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 3e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-04 |
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 166 bits (420), Expect = 8e-48
Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 23/272 (8%)
Query: 323 IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEV 382
+P + +G + L LR E +P+K+ IA+V + K TV+ K IH + R E+
Sbjct: 8 LPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVLGVK--TVLRKGH-IHGETRKPDYEL 64
Query: 383 LAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICI 442
L G++++ + I ++ ER R+ ++V D+FAG+G + +
Sbjct: 65 LYGSDTVTVHVENGIKYKLD-VAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSL 123
Query: 443 PAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501
P A +V A + +PY +L N LNK+E ++ +NMD R F +
Sbjct: 124 PIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-------PGENIAD 176
Query: 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVE 561
+++M EF+ I +D IH + + + E + E
Sbjct: 177 RILMGYVVRTHEFIPKALSIAKDG--------AIIHYHNTVPEKLMPREPFETFKRITKE 228
Query: 562 VAVNVE---MRRVRLVAPGKWMLCASFVLPES 590
+VE +++ APG W + + +S
Sbjct: 229 YGYDVEKLNELKIKRYAPGVWHVVLDLRVFKS 260
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 405 DTIYWNSKLATERQR--LLSGFNFKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYA 460
+++N ++A R +L +V D + G I A + V+ ND++ A
Sbjct: 22 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA 81
Query: 461 VDYLERNSVLNKL--------------EKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506
+ ++RN +LN EK I + + D R + +++ + ++
Sbjct: 82 YELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM-----AERHRYFHFIDLD 136
Query: 507 LPNDATEFLDA 517
EFLD
Sbjct: 137 PFGSPMEFLDT 147
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487
DV DV G G + + A V+RVYA D NP A+ E N + L + + D
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94
Query: 488 IDAMFASQKAHKITQVVMNLPNDATEFLDAFR 519
+ + L D +
Sbjct: 95 LCK-IPDIDIAVVGGSGGELQEILRIIKDKLK 125
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 100.0 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.92 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.91 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.91 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.84 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.78 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.58 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.54 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.53 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.5 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.48 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.46 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.4 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.38 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.32 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.31 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.27 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.26 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.26 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.24 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.23 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.22 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.22 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.21 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.16 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.12 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.11 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.09 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.08 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.05 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.05 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.04 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.04 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.03 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.02 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.01 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.99 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.99 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.97 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.96 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.94 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.93 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.91 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.91 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.88 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.87 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.82 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.79 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.78 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.74 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.71 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.69 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.68 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.65 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.62 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.56 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.55 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.53 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.51 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.46 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.46 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.44 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.38 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.36 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.33 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.32 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.31 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.27 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.26 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.21 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.2 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.19 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.15 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.13 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.08 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.0 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.97 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.95 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.94 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.94 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.92 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.92 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.89 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.89 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.77 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.71 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.54 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.51 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.41 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.3 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.3 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.07 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.98 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.92 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 96.79 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.45 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.38 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.03 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.91 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.72 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 95.64 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.54 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.34 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.05 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.4 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 93.16 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.13 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.87 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.76 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.53 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.49 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.46 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 91.49 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.68 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.31 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.61 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.55 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.44 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.82 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.58 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 88.45 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.29 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.47 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 87.28 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.87 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.87 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.3 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.9 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 85.66 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 85.54 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 85.27 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.25 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.03 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.7 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.23 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.16 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 82.62 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.44 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 82.09 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.73 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.59 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.04 |
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.7e-47 Score=382.82 Aligned_cols=254 Identities=25% Similarity=0.391 Sum_probs=212.5
Q ss_pred CCCC--CCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEe
Q 007525 318 PKGM--IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLF 395 (600)
Q Consensus 318 P~~~--~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkE 395 (600)
|+++ .+|++||++|||+++++.++..++++.|++++++.. ++++|+.+ +.+.|++|.+.+++|+|++. .+.++|
T Consensus 1 p~~l~~~lP~~~e~~Gdi~ii~~~~~~~~~~~~i~~~l~~~~--~~k~v~~k-~~i~g~~R~~~~~~l~G~~~-~~~~~E 76 (260)
T d2frna1 1 PEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVL--GVKTVLRK-GHIHGETRKPDYELLYGSDT-VTVHVE 76 (260)
T ss_dssp CCCTTTCSCSCCEEETTEEECC--CCSCSCCTHHHHHHHHHH--TCSEEEEC-C----------CEEEECSCC-EEEEEE
T ss_pred ChhhhhhCCCCeEEECCEEEEECCCchhHHHHHHHHHHHhhc--CCeEEEEc-CCccchhccccceecCCCCc-eeEEEe
Confidence 5665 589999999999999999999999999999999975 69999988 45789999999999999864 677889
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCC
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLE 474 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~ 474 (600)
+|++|.+|++++||++++.+||.++.+.+++|++|||+|||+|+|++++|++| ++|+|+|+||+|+++|++|+++||++
T Consensus 77 ~g~~~~~d~~~~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~ 156 (260)
T d2frna1 77 NGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE 156 (260)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT
T ss_pred cCeeEEeccccccEecCCHHHHHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999987 59999999999999999999999999
Q ss_pred CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHH
Q 007525 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHER 554 (600)
Q Consensus 475 nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eR 554 (600)
++|+++++|+++++. ...||+|+||||..+.+||+.+.++++++ |+||+|+|+++.....+..+.
T Consensus 157 ~~v~~~~~D~~~~~~-------~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g--------G~lh~~~~~~~~~~~~~~~e~ 221 (260)
T d2frna1 157 DRMSAYNMDNRDFPG-------ENIADRILMGYVVRTHEFIPKALSIAKDG--------AIIHYHNTVPEKLMPREPFET 221 (260)
T ss_dssp TTEEEECSCTTTCCC-------CSCEEEEEECCCSSGGGGHHHHHHHEEEE--------EEEEEEEEEEGGGTTTTTHHH
T ss_pred ceEEEEEcchHHhcc-------CCCCCEEEECCCCchHHHHHHHHhhcCCC--------CEEEEEeccccccchhhHHHH
Confidence 999999999998753 46799999999999999999999999876 799999998765433333343
Q ss_pred HH---HHHhhcccceEEEEeEEecCCCcEEEEEEEeccc
Q 007525 555 IR---IALVEVAVNVEMRRVRLVAPGKWMLCASFVLPES 590 (600)
Q Consensus 555 I~---~~L~~~~~~~~v~~VR~VAP~K~mycvsFrlp~~ 590 (600)
+. ...+.....++.+.||+|||+++|+|+++++.++
T Consensus 222 ~~~~~~~~g~~v~~~~~~~Vk~yaP~~~~v~~D~~i~~~ 260 (260)
T d2frna1 222 FKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFKS 260 (260)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEEEECC
T ss_pred HHHHHHHcCCceEEEEEEEEECcCCCccEEEEEEEEeCC
Confidence 43 3333334557788999999999999999998753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=3.4e-24 Score=220.20 Aligned_cols=222 Identities=21% Similarity=0.199 Sum_probs=175.7
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccccc--ccccccceeEEEecCCceEEEEEeccEEEEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAI--HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFR 402 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I--~ge~R~~~~evLaGe~~~~t~vkEnG~~F~v 402 (600)
-.|+||+++++|+.+.+ ..++..|.++|++.. |.+++|+.+.+.. ..+.......++.|.....+.+.|+|+.|.+
T Consensus 41 ~vD~y~~~~vvq~~~~~~e~~~~~i~~aL~~~~-~~~~~i~~r~~~~~r~~~~l~~~~~~l~g~~~~~~~v~e~~~~~~~ 119 (324)
T d2as0a2 41 IVDRFNDIASLQISSAGMERFKLDVAEAIMEVE-PGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIV 119 (324)
T ss_dssp EEEEETTEEEEEECCHHHHTTHHHHHHHHHHHC-TTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEeCCHHHHHHHHHHHHHHHHhc-ccceeeeeeccchhhhhcCCchhheeeccCCCceEEEEcCCEEEEe
Confidence 46999999999998875 578899999999986 8899999875532 1222334567888988888899999999999
Q ss_pred ecCe----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 403 CFDT----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 403 D~~k----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
+... +|.+++.. |..+.+.+++|++|||+|||+|+|++.+|+.|+ +|+++|+|+.+++.+++|+++||+.+++
T Consensus 120 ~~~~~~tG~flDqr~~--r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~ 197 (324)
T d2as0a2 120 DMRGQKTGFFLDQREN--RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM 197 (324)
T ss_dssp ESSSSSSCCCSTTHHH--HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccccCcccchhhH--HHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccc
Confidence 9763 67776533 345556688999999999999999999999875 9999999999999999999999998789
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+++++|+.+++..+.. ...+||+||+|||..+ .+++..+.++++++ |++.+++.+..
T Consensus 198 ~~~~~d~~~~~~~~~~--~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG--------G~lv~~s~s~~ 267 (324)
T d2as0a2 198 KFIVGSAFEEMEKLQK--KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG--------GILVTCSCSQH 267 (324)
T ss_dssp EEEESCHHHHHHHHHH--TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE--------EEEEEEECCTT
T ss_pred eeeechhhhhhHHHHh--ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC--------cEEEEEeCCcc
Confidence 9999999999876543 2578999999999853 23567777778775 67887776665
Q ss_pred CCCchhHHHHHHHHHhh
Q 007525 545 RDPEFDFHERIRIALVE 561 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~ 561 (600)
-+. .++.+.+.++...
T Consensus 268 ~~~-~~f~~~v~~a~~~ 283 (324)
T d2as0a2 268 VDL-QMFKDMIIAAGAK 283 (324)
T ss_dssp SCH-HHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHH
Confidence 432 3566666554443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.91 E-value=1.5e-23 Score=215.57 Aligned_cols=217 Identities=13% Similarity=0.110 Sum_probs=166.3
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecC-CceEEEEEeccEEEEEe
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGN-NSLVTMLLFHHLSLFRC 403 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe-~~~~t~vkEnG~~F~vD 403 (600)
-.|+||++++||+.+.. ..+++.|.++|.+.. |.+++|+.+.... +. ......++|. .+....++|||++|.+|
T Consensus 43 ~vD~yg~~lviq~~~~~~~~~~~~i~~al~~~~-p~~~~i~~~~~~~-g~--~~~~~~l~G~~~~~~~~v~E~Gl~f~vd 118 (317)
T d2b78a2 43 TIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVY-PNFLGAYEKIRFK-GI--DNVSAHLYGQEAPEQFLILENGISYNVF 118 (317)
T ss_dssp EEEEETTEEEEEECSHHHHHTHHHHHHHHHHHS-TTCSEEEEEECC-------CCEEEEEESCCCSSEEEEETTEEEEEC
T ss_pred EEEEECCEEEEEECChHHHHHHHHHHHHHHHHh-hhhheeeehhhhc-cc--cccceEEecCCCCcceeeeeCCEEEEEE
Confidence 58999999999998765 678899999999987 8899998775421 11 1233456665 45567789999999999
Q ss_pred cCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCC-Cc
Q 007525 404 FDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLE-KK 476 (600)
Q Consensus 404 ~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~-nr 476 (600)
+.. +|.++|.. +.+++..+.+|.+|||+|||+|+||+.||+.|+ .|+++|+++.+++.+++|+++|+++ ++
T Consensus 119 l~~g~ktGlflDqR~~--r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~ 196 (317)
T d2b78a2 119 LNDGLMTGIFLDQRQV--RNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMAN 196 (317)
T ss_dssp SSSSSCCSSCGGGHHH--HHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTT
T ss_pred cccccccCCcHHHHHH--HHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcc
Confidence 975 66665522 355677788999999999999999999999875 8999999999999999999999995 46
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++++++|+.++++.+... ..+||+||+|||..+ .+.+..+.++++++ |++.+.+-+.
T Consensus 197 ~~~i~~d~~~~l~~~~~~--~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg--------G~l~~~scs~ 266 (317)
T d2b78a2 197 HQLVVMDVFDYFKYARRH--HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN--------GLIIASTNAA 266 (317)
T ss_dssp EEEEESCHHHHHHHHHHT--TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE--------EEEEEEECCT
T ss_pred eEEEEccHHHHHHHHHhh--cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC--------CEEEEEeCCc
Confidence 999999999999876543 578999999999753 14677788888876 4665544443
Q ss_pred CCCCchhHHHHHHHHH
Q 007525 544 ARDPEFDFHERIRIAL 559 (600)
Q Consensus 544 ~~d~~~di~eRI~~~L 559 (600)
.-+ ..++.+-+.+.+
T Consensus 267 ~~~-~~~f~~~v~~a~ 281 (317)
T d2b78a2 267 NMT-VSQFKKQIEKGF 281 (317)
T ss_dssp TSC-HHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHH
Confidence 322 235555555544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.6e-23 Score=214.87 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=175.8
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccc--cccccceeEEEecCCceEEEEEeccEEEEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIH--NDYRTMQLEVLAGNNSLVTMLLFHHLSLFR 402 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~--ge~R~~~~evLaGe~~~~t~vkEnG~~F~v 402 (600)
-+|+||+++++|....+ ..+...|.++|.. .+++|+.+.+... .+......++++|+.....++.|+|++|.+
T Consensus 45 ~vD~y~~~~vvq~~~~~~e~~~~~i~~~L~~----~~~~i~~~~~~~~r~~egl~~~~~~l~g~~~~~~~v~E~G~~f~v 120 (318)
T d1wxxa2 45 VVDYYAGHAVVQATAHAWEGLLPQVAEALRP----HVQSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYLV 120 (318)
T ss_dssp EEEEETTEEEEEECSHHHHTTHHHHHHHHGG----GCSEEEEEECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEeCcHHHHHHHHHHHHHhcc----ccceEEEecccchHhhcCCcceeeeecCCccceEEEEECCEEEEE
Confidence 57999999999998765 5778888888843 4578887755321 112234567899998878889999999999
Q ss_pred ecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 403 CFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 403 D~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
|+.. +|.++|.. +++++.. +|++|||+|||+|.|++++|+.+++|+++|+|+.+++.+++|+++||+++ +
T Consensus 121 ~l~~~~~tG~flDqr~~---r~~~~~~-~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-~ 195 (318)
T d1wxxa2 121 DLRAGQKTGAYLDQREN---RLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-V 195 (318)
T ss_dssp ECSTTSCCCCCGGGHHH---HHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-E
T ss_pred echhccccccchhhhhh---HHHHHHh-CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCC-c
Confidence 9874 77777643 3444444 68999999999999999999877899999999999999999999999986 9
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+++++|+.+++..+.. ..++||.|++|||.++ .+.+..+.++++++ |+|.+.+.+..
T Consensus 196 ~~i~~d~~~~~~~~~~--~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG--------G~Lv~~scs~~ 265 (318)
T d1wxxa2 196 RVLEANAFDLLRRLEK--EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG--------GILATASCSHH 265 (318)
T ss_dssp EEEESCHHHHHHHHHH--TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE--------EEEEEEECCTT
T ss_pred ceeeccHHHHhhhhHh--hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC--------CEEEEEeCCcc
Confidence 9999999999876553 2578999999999752 14567778888876 57766655554
Q ss_pred CCCchhHHHHHHHHHhhcccceEEEEeEEecCCCcE
Q 007525 545 RDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWM 580 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~m 580 (600)
-+ ..++.+.+.++..... ..++.+....+...|
T Consensus 266 ~~-~~~f~~~v~~a~~~a~--~~~~~~~~~~~~~Dh 298 (318)
T d1wxxa2 266 MT-EPLFYAMVAEAAQDAH--RLLRVVEKRGQPFDH 298 (318)
T ss_dssp SC-HHHHHHHHHHHHHHTT--CCEEEEEEECCCTTS
T ss_pred cC-HHHHHHHHHHHHHHcC--CCEEEEEecCCCCCC
Confidence 33 2355555655544432 345666777766655
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.84 E-value=9e-20 Score=186.81 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=126.8
Q ss_pred eEEEECcEEEEEeCCCC--cccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEe
Q 007525 326 AFETVGHIAHLNLREEH--QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRC 403 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~--~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD 403 (600)
..|+||++++++..... .+. +.+.+.++. ..++.+.....+ ....+...+..+....+.|+|++|.++
T Consensus 34 ~ldrfG~~~vvrp~~~a~w~~~---l~~~~w~~~----~~~~~~~~~~~~---~~~w~~~~~~~p~~~~v~e~gl~f~v~ 103 (309)
T d2igta1 34 KLEQYGDYRVVRPEAQALWRPL---VPDRVWQNA----DAIFTGDTDEDG---MGRWRFPKEALGETWPLSLLGVEFLGR 103 (309)
T ss_dssp EEEEETTEEEEEECTTCCSCCC---SCHHHHHTC----SEEEEECC---C---CEEEECSSSCCCSEEEEEETTEEEEEE
T ss_pred EEEeECCEEEEeeCchhhcCCC---CCHHHHHhc----CcEEecccccCC---CCceeecCCCCCCeEEEEEeEEEEEEe
Confidence 58999999999987543 232 223334432 244433221111 112333333334556788999999999
Q ss_pred cCe-----eeecChhHHHH-HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCC-c
Q 007525 404 FDT-----IYWNSKLATER-QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK-K 476 (600)
Q Consensus 404 ~~k-----fy~n~Rl~tEr-~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~n-r 476 (600)
+.. +|.++|..... ...+....++.+|||+|||+|.|++.+|+.|++|++||+++.+++.+++|+++|++.+ +
T Consensus 104 ~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~ 183 (309)
T d2igta1 104 FTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAP 183 (309)
T ss_dssp CCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSC
T ss_pred ccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCc
Confidence 974 67777755433 2234446778999999999999999999999999999999999999999999999975 6
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++++++|+.+++...... ..+||+||||||.+
T Consensus 184 ~~~i~~D~~~~l~~~~~~--~~~fD~IilDPP~f 215 (309)
T d2igta1 184 IRWICEDAMKFIQREERR--GSTYDIILTDPPKF 215 (309)
T ss_dssp EEEECSCHHHHHHHHHHH--TCCBSEEEECCCSE
T ss_pred EEEEeCCHHHhHHHHhhc--CCCCCEEEECCCcc
Confidence 999999999999775543 57899999999974
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.1e-18 Score=176.86 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=133.8
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYAN 454 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~Av 454 (600)
..+.++|+.... ..+|++|.+++..|||.|..++|. +.+.+. ..++++|+|+|||+|.||+++|+++++|+|+
T Consensus 164 ~~~~~~g~~~~~---~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv 240 (358)
T d1uwva2 164 ILETVSGEMPWY---DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 240 (358)
T ss_dssp CCEEEECCCCEE---EETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred eEEeecCCceEE---ecCCEEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEec
Confidence 356788886532 348999999999999999999988 455554 4578999999999999999999999999999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-HHHHHHHHHhcCCCCCCCCCc
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-EFLDAFRGIYRDRPEDAKFTF 533 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-eFLdaa~~lLk~~~~~g~~~~ 533 (600)
|+++.|++.|++|++.|++.| ++++.+|+.+.+..... ....+|.||+|||+.+. +.+..+.+. ++.
T Consensus 241 E~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~~~~~--~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~-------- 308 (358)
T d1uwva2 241 EGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPW--AKNGFDKVLLDPARAGAAGVMQQIIKL-EPI-------- 308 (358)
T ss_dssp ESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGG--GTTCCSEEEECCCTTCCHHHHHHHHHH-CCS--------
T ss_pred cCcHHHHHHHHHhHHhccccc-ceeeecchhhhhhhhhh--hhccCceEEeCCCCccHHHHHHHHHHc-CCC--------
Confidence 999999999999999999997 99999999887643221 24579999999999753 455555543 221
Q ss_pred cEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEEE
Q 007525 534 PKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASFV 586 (600)
Q Consensus 534 p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsFr 586 (600)
-+|+|=|.... +..-+. .|.+ .++.+..|+ |.-|...|+=....
T Consensus 309 ~ivYVSCnp~T------laRDl~-~l~~--~gy~l~~i~~~D~FP~T~HvE~v~~ 354 (358)
T d1uwva2 309 RIVYVSCNPAT------LARDSE-ALLK--AGYTIARLAMLDMFPHTGHLESMVL 354 (358)
T ss_dssp EEEEEESCHHH------HHHHHH-HHHH--TTCEEEEEEEECCSTTSSCCEEEEE
T ss_pred EEEEEeCCHHH------HHHHHH-HHHH--CCCeEeEEEEEecCCCCccEEEEEE
Confidence 25666664211 111111 2222 245666665 44577777655443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.58 E-value=3.4e-15 Score=136.52 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-+|.+|||+|||+|.+++.|+++|+ +|+++|+|+.|++.+++|++.+++.++++++++|+.+++.. ...+||.|
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~-----~~~~fDiI 87 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-----LTGRFDLV 87 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-----BCSCEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc-----ccccccee
Confidence 3689999999999999999999985 99999999999999999999999998999999999998754 35789999
Q ss_pred EeCCCcch
Q 007525 504 VMNLPNDA 511 (600)
Q Consensus 504 VmNpP~~a 511 (600)
++|||+..
T Consensus 88 f~DPPy~~ 95 (152)
T d2esra1 88 FLDPPYAK 95 (152)
T ss_dssp EECCSSHH
T ss_pred Eechhhcc
Confidence 99999854
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.54 E-value=2.8e-14 Score=133.67 Aligned_cols=112 Identities=24% Similarity=0.253 Sum_probs=94.8
Q ss_pred HHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 417 RQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 417 r~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
|..+++. +.+|++|||+|||+|.+++.+|+.+++|+|+|++|++++.+++|++.|++.++++++++|+.+.+.
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~----- 96 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC----- 96 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-----
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc-----
Confidence 3444443 779999999999999999999999889999999999999999999999998779999999988763
Q ss_pred hcCCcccEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 495 QKAHKITQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
....||.|+++.+.. ..++++.+.+.|+++ +++-+++..
T Consensus 97 -~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg--------G~lvi~~~~ 136 (186)
T d1l3ia_ 97 -KIPDIDIAVVGGSGGELQEILRIIKDKLKPG--------GRIIVTAIL 136 (186)
T ss_dssp -TSCCEEEEEESCCTTCHHHHHHHHHHTEEEE--------EEEEEEECB
T ss_pred -ccCCcCEEEEeCccccchHHHHHHHHHhCcC--------CEEEEEeec
Confidence 246899999998764 467889999999886 566666543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.53 E-value=2.6e-14 Score=134.92 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=77.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..+|.+|||+|||+|.+|+.|+++|+ +|+++|.|+.+++.+++|++.++..++++++++|+.+++..+... ..+||.
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~--~~~fDl 116 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE--KLQFDL 116 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT--TCCEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc--CCCcce
Confidence 44789999999999999999999986 899999999999999999999999878999999999999775432 568999
Q ss_pred EEeCCCcch
Q 007525 503 VVMNLPNDA 511 (600)
Q Consensus 503 VVmNpP~~a 511 (600)
|++|||+..
T Consensus 117 IflDPPY~~ 125 (182)
T d2fhpa1 117 VLLDPPYAK 125 (182)
T ss_dssp EEECCCGGG
T ss_pred EEechhhhh
Confidence 999999853
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=7.1e-14 Score=131.51 Aligned_cols=95 Identities=25% Similarity=0.336 Sum_probs=83.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCC-cEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~n-rV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++++|||+|||+|.+++.+|+.+.+|+++|+|+.+++.+++|++.|++++ +++++++|..+.+. ...||+
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-------~~~fD~ 122 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-------DRKYNK 122 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-------TSCEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-------cCCceE
Confidence 5679999999999999999999998999999999999999999999999975 59999999987542 468999
Q ss_pred EEeCCCcch-----HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-----TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-----~eFLdaa~~lLk~~ 525 (600)
|++|||... .++++.+.+.|+++
T Consensus 123 Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg 150 (194)
T d1dusa_ 123 IITNPPIRAGKEVLHRIIEEGKELLKDN 150 (194)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHEEEE
T ss_pred EEEcccEEecchhhhhHHHHHHHhcCcC
Confidence 999999742 35788888899886
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=4.9e-14 Score=132.76 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+.+|||+|||+|.+|+.|+++|+ +|++||.|+.+++.+++|++.+++.+ ++++++|+.+++.. ...+||.|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l~~-----~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFLAQ-----KGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHHSS-----CCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccccc-----cccccCEEE
Confidence 678999999999999999999986 89999999999999999999999876 89999999998743 356899999
Q ss_pred eCCCcch
Q 007525 505 MNLPNDA 511 (600)
Q Consensus 505 mNpP~~a 511 (600)
+|||+..
T Consensus 117 ~DPPY~~ 123 (183)
T d2fpoa1 117 VDPPFRR 123 (183)
T ss_dssp ECCSSST
T ss_pred EcCcccc
Confidence 9999864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=1.6e-13 Score=143.41 Aligned_cols=129 Identities=20% Similarity=0.241 Sum_probs=105.9
Q ss_pred EEEEeccEEEEEecCe------eeecChhHHHHHH---HHhcCCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHH
Q 007525 391 TMLLFHHLSLFRCFDT------IYWNSKLATERQR---LLSGFNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPY 459 (600)
Q Consensus 391 t~vkEnG~~F~vD~~k------fy~n~Rl~tEr~R---iv~~l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~ 459 (600)
++++|++.+|.+.-.. +|+|+.....|.. +++.+ ++.+|||+|||+|.++|.+|+. | .+|+++|+|+.
T Consensus 2 ~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~-~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~ 80 (375)
T d2dula1 2 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISED 80 (375)
T ss_dssp EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred eEEEeCcEEEEecCCCCCCCCCcccCHHHhhhhHHHHHHHHHh-CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHH
Confidence 4678999999884332 8999998877744 33333 6789999999999999988873 4 49999999999
Q ss_pred HHHHHHHHHHHcCCCC--------------cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 460 AVDYLERNSVLNKLEK--------------KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 460 Ave~l~eNaklNgl~n--------------rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|++++++|+++|++.+ .+.+.++|+..++.. ....||+|.+||..++..||+++.+.++.+
T Consensus 81 A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~-----~~~~fDvIDiDPfGs~~pfldsAi~a~~~~ 155 (375)
T d2dula1 81 AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE-----RHRYFHFIDLDPFGSPMEFLDTALRSAKRR 155 (375)
T ss_dssp HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH-----STTCEEEEEECCSSCCHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh-----hcCcCCcccCCCCCCcHHHHHHHHHHhccC
Confidence 9999999999998753 478899999888753 246799999999999899999999999875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=9.3e-14 Score=137.89 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=99.6
Q ss_pred cEEEEEecCeeeecChhHHHH---HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC
Q 007525 397 HLSLFRCFDTIYWNSKLATER---QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 473 (600)
Q Consensus 397 G~~F~vD~~kfy~n~Rl~tEr---~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl 473 (600)
.+...+||+-.|=.-...|-+ +.+.+..++|++|||+|||+|.+++.+++.|++|+|+|++|.|++.+++|++.|++
T Consensus 88 ~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~ 167 (254)
T d2nxca1 88 EIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV 167 (254)
T ss_dssp SEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC
T ss_pred ceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC
Confidence 355677887666555444444 23334478999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 474 EKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 474 ~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
. ++++++|+.+.+. .++||.|++|..... .++++.+.++++++ |++.+..+..
T Consensus 168 ~--~~~~~~d~~~~~~-------~~~fD~V~ani~~~~l~~l~~~~~~~LkpG--------G~lilSgil~ 221 (254)
T d2nxca1 168 R--PRFLEGSLEAALP-------FGPFDLLVANLYAELHAALAPRYREALVPG--------GRALLTGILK 221 (254)
T ss_dssp C--CEEEESCHHHHGG-------GCCEEEEEEECCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEG
T ss_pred c--eeEEecccccccc-------ccccchhhhccccccHHHHHHHHHHhcCCC--------cEEEEEecch
Confidence 6 4789999876542 468999999976543 46788899999986 5777765543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=1.1e-13 Score=129.07 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=71.5
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+.+|.+|||+|||+|.+++.|+++|++|+++|+|+.+++.+++|++.|++.+ ++...|+..++..... ...+||+
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~--~v~~~~~d~~~~~~~~--~~~~fD~ 113 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGA--RVVALPVEVFLPEAKA--QGERFTV 113 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCC--EEECSCHHHHHHHHHH--TTCCEEE
T ss_pred cccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcccc--ceeeeehhcccccccc--cCCccce
Confidence 46789999999999999999999999999999999999999999999999986 4566666666544322 3568999
Q ss_pred EEeCCCcc
Q 007525 503 VVMNLPND 510 (600)
Q Consensus 503 VVmNpP~~ 510 (600)
|++|||+.
T Consensus 114 If~DPPY~ 121 (171)
T d1ws6a1 114 AFMAPPYA 121 (171)
T ss_dssp EEECCCTT
T ss_pred eEEccccc
Confidence 99999974
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=7.1e-13 Score=126.63 Aligned_cols=102 Identities=26% Similarity=0.214 Sum_probs=80.0
Q ss_pred eecChhHHHH-HHHHhcC--CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 007525 408 YWNSKLATER-QRLLSGF--NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483 (600)
Q Consensus 408 y~n~Rl~tEr-~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD 483 (600)
|+.+...+.+ ..++... -.|.+|||+|||+|.+++.|+.+|+ +|+|+|+++.+++.+++|++.+++. ++++++|
T Consensus 25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d 102 (201)
T d1wy7a1 25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 102 (201)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECc
Confidence 5556554444 2223322 3688999999999999999999985 9999999999999999999999875 7899999
Q ss_pred hHHHHHHHHHhhcCCcccEEEeCCCcch------HHHHHHHHH
Q 007525 484 GRRFIDAMFASQKAHKITQVVMNLPNDA------TEFLDAFRG 520 (600)
Q Consensus 484 are~l~~l~~~~~~~~fD~VVmNpP~~a------~eFLdaa~~ 520 (600)
+.++ ..+||+||+|||+.. ..|+..+..
T Consensus 103 ~~~~---------~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~ 136 (201)
T d1wy7a1 103 VSEF---------NSRVDIVIMNPPFGSQRKHADRPFLLKAFE 136 (201)
T ss_dssp GGGC---------CCCCSEEEECCCCSSSSTTTTHHHHHHHHH
T ss_pred hhhh---------CCcCcEEEEcCccccccccccHHHHHHHHh
Confidence 8764 367999999999842 456665544
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=5.5e-13 Score=133.80 Aligned_cols=105 Identities=23% Similarity=0.210 Sum_probs=89.1
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhc-CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSG-FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl 470 (600)
.|..|.+++.- +.||-.||- ..+++. ...+..|+|+|||+|.+++.+|+. ..+|+|+|+|+.|++.+++|++.
T Consensus 77 ~~~~~~v~~~V--lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~ 154 (274)
T d2b3ta1 77 WSLPLFVSPAT--LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH 154 (274)
T ss_dssp TTEEEECCTTS--CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred eeeEEEEeccc--cccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH
Confidence 89999999875 568988986 344443 345678999999999999999885 46999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|++++ |+++++|..+.+. ..+||+||.|||+.
T Consensus 155 ~~~~~-v~~~~~d~~~~~~-------~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 155 LAIKN-IHILQSDWFSALA-------GQQFAMIVSNPPYI 186 (274)
T ss_dssp HTCCS-EEEECCSTTGGGT-------TCCEEEEEECCCCB
T ss_pred hCccc-ceeeecccccccC-------CCceeEEEecchhh
Confidence 99975 9999999987652 46899999999984
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.32 E-value=2.5e-12 Score=121.47 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=92.0
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. ++++++|||+|||+|.+++.+++.|++|+|+|+|+.+++.++++++.++..+ ++++++|+.+.. + +
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~---~---~ 78 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMP---F---T 78 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCC---S---C
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccc-cccccccccccc---c---c
Confidence 44443 7899999999999999999999999999999999999999999999999886 999999998752 1 2
Q ss_pred CCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 497 AHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 497 ~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.++||+|++.--- ....++..+.++|+++ |++.+.++...
T Consensus 79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~~~ 122 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG--------GQLLLVDNSAP 122 (231)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEBC
T ss_pred ccccccccccccccccCCHHHHHHHHHHhcCCC--------cEEEEEeCCCC
Confidence 5789999975321 2457899999999987 67888777653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.31 E-value=1.8e-12 Score=121.80 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCC-cEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~n-rV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.|.+|||+|||+|.+|+.|+++|+ +|+.||.|+.+++.+++|++..++.+ ...+++.|+.+++.... ...+||+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~---~~~~fDlI 119 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ---NQPHFDVV 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC---SSCCEEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc---cCCcccEE
Confidence 678999999999999999999996 99999999999999999999998854 57888999988765321 23569999
Q ss_pred EeCCCcch
Q 007525 504 VMNLPNDA 511 (600)
Q Consensus 504 VmNpP~~a 511 (600)
+||||+..
T Consensus 120 FlDPPY~~ 127 (183)
T d2ifta1 120 FLDPPFHF 127 (183)
T ss_dssp EECCCSSS
T ss_pred EechhHhh
Confidence 99999964
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=4.6e-12 Score=121.18 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=91.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+++|++|||+|||+|.++..+++++.+|+|+|+|+.+++.|++++..+++.+ +.++++|+.+.. + +.++||.|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~---~---~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLP---F---PDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCC---S---CTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccc-cccccccccccc---c---ccccccee
Confidence 7899999999999999999999999999999999999999999999999986 999999998752 1 25789999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
++.--- ...+++.++.++|+++ |.+.+.+|.....
T Consensus 87 ~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~~~~~~~~~~~~ 125 (234)
T d1xxla_ 87 TCRYAAHHFSDVRKAVREVARVLKQD--------GRFLLVDHYAPED 125 (234)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEECBCSS
T ss_pred eeeceeecccCHHHHHHHHHHeeCCC--------cEEEEEEcCCCCC
Confidence 974322 2468899999999987 5777766665443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.26 E-value=9.2e-12 Score=116.50 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=89.2
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+..+.+| +|||+|||+|..++.+|++|.+|+|+|+++.+++.++++++..++++ +++...|+.+.. ..+.
T Consensus 25 ~~~~~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~-------~~~~ 95 (198)
T d2i6ga1 25 AAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLT-------FDGE 95 (198)
T ss_dssp HHTTSCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCC-------CCCC
T ss_pred HcccCCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccc-hhhhheeccccc-------cccc
Confidence 34445655 89999999999999999999999999999999999999999999986 999999987753 2578
Q ss_pred ccEEEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
||+|++... .....++..+.++++++ |.+.++++..
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg--------G~~~~~~~~~ 137 (198)
T d2i6ga1 96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKPG--------GYNLIVAAMD 137 (198)
T ss_dssp EEEEEEESCGGGSCTTHHHHHHHHHHHTEEEE--------EEEEEEEEBC
T ss_pred ccEEEEeeeeecCCHHHHHHHHHHHHHHcCCC--------cEEEEEEecC
Confidence 999997542 22357899999999986 5777777764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.26 E-value=5.6e-11 Score=115.79 Aligned_cols=178 Identities=11% Similarity=0.054 Sum_probs=119.5
Q ss_pred EecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhc-----CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEE
Q 007525 383 LAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYAN 454 (600)
Q Consensus 383 LaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~Av 454 (600)
+||+. .++..|..|+. ||++-+.--..|++- +++|++|||+|||+|+++..+|+. | .+|||+
T Consensus 35 vyge~----~~~~~~~e~R~------w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aV 104 (227)
T d1g8aa_ 35 VYGER----VIKWEGEEYRI------WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI 104 (227)
T ss_dssp CTTCC----EEEETTEEEEE------CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE
T ss_pred ccCce----EEEcCCeeEEE------ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEE
Confidence 46664 23346777775 777644222334331 679999999999999999999986 3 699999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc--hHHHHHHHHHHhcCCCCCCCCC
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND--ATEFLDAFRGIYRDRPEDAKFT 532 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~--a~eFLdaa~~lLk~~~~~g~~~ 532 (600)
|++|.+++.++++++..+ ++..+..|+........ ....+|.|++|.+.. ...++..+.+.|+++
T Consensus 105 D~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~---~~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg------- 171 (227)
T d1g8aa_ 105 EFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRA---LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG------- 171 (227)
T ss_dssp ESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTT---TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-------
T ss_pred eCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccc---cccceEEEEEEccccchHHHHHHHHHHhcccC-------
Confidence 999999999999986553 37788899865432101 235789999998764 457899999999986
Q ss_pred ccEEEEEeccCCCCCch---hHHHHHHHHHhhcccceEEEEeEEecC-CCcEEEEEEEe
Q 007525 533 FPKIHLYGFSKARDPEF---DFHERIRIALVEVAVNVEMRRVRLVAP-GKWMLCASFVL 587 (600)
Q Consensus 533 ~p~IHvY~F~k~~d~~~---di~eRI~~~L~~~~~~~~v~~VR~VAP-~K~mycvsFrl 587 (600)
|.+-+..+++..+... .+.+.+.+.+. ..+.+-...+..| .+.||.+-.+.
T Consensus 172 -G~lvi~~ka~~~~~~~~~~~v~~~v~~l~~---~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 172 -GYGMIAVKSRSIDVTKEPEQVFREVERELS---EYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp -EEEEEEEEGGGTCTTSCHHHHHHHHHHHHH---TTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred -CeEEEEEECCccCCCCCHHHHHHHHHHHHH---cCCEEEEEEcCCCCCCceEEEEEEe
Confidence 4555555555433222 22222222221 2455555667888 46788876653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=7.1e-12 Score=120.08 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|.+|||+|||+|.+++.+++.| .+|+|+|+++.+++.+++|+. ++.++++|+.++ .++||.||
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l---------~~~fD~Vi 112 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI---------SGKYDTWI 112 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC---------CCCEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc---------CCcceEEE
Confidence 58999999999999999999987 489999999999999999863 378999998763 46899999
Q ss_pred eCCCcch------HHHHHHHHH
Q 007525 505 MNLPNDA------TEFLDAFRG 520 (600)
Q Consensus 505 mNpP~~a------~eFLdaa~~ 520 (600)
||||+.. ..||+.+..
T Consensus 113 ~NPPfg~~~~~~D~~fl~~a~~ 134 (197)
T d1ne2a_ 113 MNPPFGSVVKHSDRAFIDKAFE 134 (197)
T ss_dssp ECCCC-------CHHHHHHHHH
T ss_pred eCcccchhhhhchHHHHHHHHh
Confidence 9999842 357776654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.7e-11 Score=118.14 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=85.0
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..+.+. +.+|++|||+|||+|.++..+|++ |++|+|+|+|+.+++.+++++..+++.+++++.++|+.+..
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~------ 96 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV------ 96 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC------
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc------
Confidence 344444 789999999999999999999886 78999999999999999999999999989999999998863
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
..++||.|++.--. .-..++.++.++|+++
T Consensus 97 -~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG 130 (245)
T d1nkva_ 97 -ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG 130 (245)
T ss_dssp -CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred -ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC
Confidence 25789999863111 1357889999999986
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=3.6e-11 Score=115.34 Aligned_cols=146 Identities=11% Similarity=0.063 Sum_probs=101.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++|||+|||+|+++..+|+. + ++|+|+|++|.+++.|+++++..+ ++.++.+|+....... .....+|
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~---~~~~~vd 127 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS---GIVEKVD 127 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT---TTCCCEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc---cccceEE
Confidence 789999999999999999999985 3 599999999999999999998764 4899999987643210 0134577
Q ss_pred EEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCC-C
Q 007525 502 QVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPG-K 578 (600)
Q Consensus 502 ~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~-K 578 (600)
.|+.|.+. ....++..+.+.|+++ |.+.+..++...+...+..+-.+........++.+..+.+..|- +
T Consensus 128 ~v~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~P~~~ 199 (209)
T d1nt2a_ 128 LIYQDIAQKNQIEILKANAEFFLKEK--------GEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHR 199 (209)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCT
T ss_pred EEEecccChhhHHHHHHHHHHHhccC--------CeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEEccCCCcc
Confidence 77788654 4567999999999987 56666655543332222222222222222245677778888884 4
Q ss_pred cEEEE
Q 007525 579 WMLCA 583 (600)
Q Consensus 579 ~mycv 583 (600)
.|+.+
T Consensus 200 ~H~~v 204 (209)
T d1nt2a_ 200 DHIFI 204 (209)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 55543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=1.3e-11 Score=123.57 Aligned_cols=108 Identities=21% Similarity=0.183 Sum_probs=89.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcC--CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGF--NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNakl 470 (600)
.|..|.++..- +.||-.||- ..+++.. ....+|+|+|||+|.+++.+|+.. ++|+|+|+||.|++.+++|++.
T Consensus 78 ~~~~f~v~~~v--lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~ 155 (271)
T d1nv8a_ 78 MGLSFLVEEGV--FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER 155 (271)
T ss_dssp TTEEEECCTTS--CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred eeeEEEEecCc--cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHH
Confidence 89999999875 468888886 3333321 234689999999999999998764 6999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|++.+++.+..+|..+.... ..++||+||.|||+-
T Consensus 156 ~~~~~~~~i~~~~~~~~~~~-----~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 156 HGVSDRFFVRKGEFLEPFKE-----KFASIEMILSNPPYV 190 (271)
T ss_dssp TTCTTSEEEEESSTTGGGGG-----GTTTCCEEEECCCCB
T ss_pred cCCCceeEEeeccccccccc-----ccCcccEEEEccccc
Confidence 99999899999999886542 246899999999973
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=7.8e-12 Score=123.73 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=88.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|||+|||+|.+++.+|+. .++|+++|.++++++.|++|++.++..+++++.++|+.+.+ +...|
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~-------~~~~f 155 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-------SDQMY 155 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-------CSCCE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc-------cccee
Confidence 789999999999999999999985 36999999999999999999999876666999999998764 24679
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|.|++|.|.. .++++.+.++|+++ |++.||+
T Consensus 156 D~V~ld~p~p-~~~l~~~~~~LKpG--------G~lv~~~ 186 (250)
T d1yb2a1 156 DAVIADIPDP-WNHVQKIASMMKPG--------SVATFYL 186 (250)
T ss_dssp EEEEECCSCG-GGSHHHHHHTEEEE--------EEEEEEE
T ss_pred eeeeecCCch-HHHHHHHHHhcCCC--------ceEEEEe
Confidence 9999999974 57899999999986 6777764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=2.9e-11 Score=112.81 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=80.1
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+.++.+|||+|||+|.+++.+|+.|.+|+|+|+|+.+++.+++++...+.. +..+++|+.+... +.+.||
T Consensus 33 ~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~l~~------~~~~fD 104 (226)
T d1ve3a1 33 KYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSF------EDKTFD 104 (226)
T ss_dssp HSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTSCCS------CTTCEE
T ss_pred HhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccc--ccccccccccccc------cCcCce
Confidence 34788999999999999999999999999999999999999999999887754 6889999987531 257899
Q ss_pred EEEeCCC------cchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLP------NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP------~~a~eFLdaa~~lLk~~ 525 (600)
+|++.-- .....+|..+.++|+++
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 134 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPS 134 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcC
Confidence 9997421 12346899999999986
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.12 E-value=6.5e-11 Score=116.45 Aligned_cols=107 Identities=11% Similarity=-0.009 Sum_probs=89.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.+|.+|||+|||+|.+++.+|++ |++|+|+|+++.+++.++++++..|+.++++++++|+.++. + +.++||+
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~---~---~~~sfD~ 138 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP---C---EDNSYDF 138 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS---S---CTTCEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc---c---cccccch
Confidence 678999999999999999999986 78999999999999999999999999888999999998752 1 2578999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|++.--. ....++.++.++|+++ |++-++++...
T Consensus 139 V~~~~~l~h~~d~~~~l~~~~~~Lkpg--------G~l~~~~~~~~ 176 (282)
T d2o57a1 139 IWSQDAFLHSPDKLKVFQECARVLKPR--------GVMAITDPMKE 176 (282)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEEC
T ss_pred hhccchhhhccCHHHHHHHHHHhcCCC--------cEEEEEEeecC
Confidence 9874321 2457899999999987 56666666543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3.5e-11 Score=118.48 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.-.+||+|||+|.+++.+|++ +.+|+|+|++++|++.|++|++.|++.+++.+++.+....+.........++||+||
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv 141 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 141 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence 458999999999999999986 689999999999999999999999999999999987765442211111245799999
Q ss_pred eCCCcch
Q 007525 505 MNLPNDA 511 (600)
Q Consensus 505 mNpP~~a 511 (600)
+|||+..
T Consensus 142 sNPPY~~ 148 (250)
T d2h00a1 142 CNPPFFA 148 (250)
T ss_dssp ECCCCC-
T ss_pred ecCcccc
Confidence 9999964
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=8.1e-11 Score=117.07 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=89.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|||+|||+|.+++.+|+. +++|+++|+++++++.+++|++..++.+++.+..+|+.+.. ....+
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~~ 173 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-------DEKDV 173 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC-------SCCSE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc-------cccce
Confidence 789999999999999999999985 36999999999999999999999999778999999975533 24579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|.|++|.|. ..++++.+.++|+++ |++-+|+-
T Consensus 174 D~V~~d~p~-p~~~l~~~~~~LKpG--------G~lv~~~P 205 (266)
T d1o54a_ 174 DALFLDVPD-PWNYIDKCWEALKGG--------GRFATVCP 205 (266)
T ss_dssp EEEEECCSC-GGGTHHHHHHHEEEE--------EEEEEEES
T ss_pred eeeEecCCC-HHHHHHHHHhhcCCC--------CEEEEEeC
Confidence 999999987 467899999999987 68888874
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.08 E-value=7.9e-10 Score=107.48 Aligned_cols=147 Identities=13% Similarity=0.007 Sum_probs=101.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++|||+|||+|+++..+|+.+ ..|||+|++|.+++.|+++++.++ ++.++.+|+........ ....+|
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~---~~~~v~ 145 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEYAN---IVEKVD 145 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGGTT---TCCCEE
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCccccc---ccceeE
Confidence 6899999999999999999999874 699999999999999999876653 37889999887643210 123345
Q ss_pred EEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHH---HHHhhcccceEEEEeEEecC
Q 007525 502 QVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIR---IALVEVAVNVEMRRVRLVAP 576 (600)
Q Consensus 502 ~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~---~~L~~~~~~~~v~~VR~VAP 576 (600)
.++.+... ....++..+.+.|+++ |.+.+.++.+..+...+.....+ +.|.. .++.+....+..|
T Consensus 146 ~i~~~~~~~~~~~~~l~~~~r~LKpg--------G~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~--aGF~ive~idL~p 215 (230)
T d1g8sa_ 146 VIYEDVAQPNQAEILIKNAKWFLKKG--------GYGMIAIKARSIDVTKDPKEIFKEQKEILEA--GGFKIVDEVDIEP 215 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEEEEGGGTCSSSCHHHHHHHHHHHHHH--HTEEEEEEEECTT
T ss_pred EeeccccchHHHHHHHHHHHHhcccC--------ceEEEEeeccccCCCCCHHHHHHHHHHHHHH--cCCEEEEEecCCC
Confidence 56666543 3567899999999986 56666666665444333333332 23322 2355555667777
Q ss_pred C-CcEEEEEEE
Q 007525 577 G-KWMLCASFV 586 (600)
Q Consensus 577 ~-K~mycvsFr 586 (600)
- ..|+++-..
T Consensus 216 y~~~H~~vvg~ 226 (230)
T d1g8sa_ 216 FEKDHVMFVGI 226 (230)
T ss_dssp TSTTEEEEEEE
T ss_pred CcCCeEEEEEE
Confidence 5 347776544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.05 E-value=1.9e-10 Score=109.62 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=78.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++.+|||+|||+|.+++.++++|.+|+|+|+|+.+++.++++++.+++ +++++++|+.++. ..++||.|
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~-------~~~~fD~I 109 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA-------FKNEFDAV 109 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC-------CCSCEEEE
T ss_pred CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhcc-------cccccchH
Confidence 44667899999999999999999999999999999999999999999888 3899999998863 24689998
Q ss_pred EeCC-----C--cchHHHHHHHHHHhcCC
Q 007525 504 VMNL-----P--NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNp-----P--~~a~eFLdaa~~lLk~~ 525 (600)
++-- . .....+|..+.+.|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg 138 (251)
T d1wzna1 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPG 138 (251)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred hhhhhhhhcCChHHHHHHHHHHHHHcCCC
Confidence 8732 1 12347899999999986
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.05 E-value=4.7e-10 Score=107.31 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=86.0
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++..|||+|||.|.+++.+|+. ...++|+|+++.++..+.++++.++++| +.++++|+..++.. + +...+|.|
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~-~---~~~~~d~v 103 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDV-F---EPGEVKRV 103 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHH-C---CTTSCCEE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcc-c---Cchhhhcc
Confidence 4678999999999999999987 4699999999999999999999999986 99999999987643 3 35678988
Q ss_pred EeCCCc--c----------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPN--D----------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~--~----------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.+.-|. . ..+|++.+.++|+++ |.+|+.+
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg--------G~l~i~T 144 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG--------GSIHFKT 144 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS--------CEEEEEE
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCC--------cEEEEEE
Confidence 775433 1 248999999999987 6888864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.04 E-value=3.8e-10 Score=107.12 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.++++.+|||+|||+|..++.+++. +++|+|+|+|+.+++.++++++..+...++++.++|+.++. ..
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 107 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IK 107 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--------CC
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--------cc
Confidence 3788999999999999999999873 57999999999999999999998888777999999987752 45
Q ss_pred cccEEEeC------CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 499 KITQVVMN------LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 499 ~fD~VVmN------pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.+|.|++. ++.....+|..+.+.|+++ |.+-+.++....
T Consensus 108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg--------G~li~~~~~~~~ 152 (225)
T d1im8a_ 108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPN--------GVLVLSEKFRFE 152 (225)
T ss_dssp SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE--------EEEEEEEECCCS
T ss_pred cceeeEEeeeccccChhhHHHHHHHHHHhCCCC--------ceeecccccccc
Confidence 78888885 2334568999999999987 567666665433
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.1e-10 Score=119.34 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=83.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHc----------CCCCcEEEEEcChHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLN----------KLEKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklN----------gl~nrV~~i~gDare~l~~ 490 (600)
+.+|++|||+|||+|.+++.+|+. .++|+++|+++++++.|++|++.. +..+++.+.++|+.+....
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 789999999999999999999985 359999999999999999999863 3445699999998776433
Q ss_pred HHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+. ...||.|++|.|. ..++|+.+.++|+++ |++.||+
T Consensus 176 ~~----~~~fD~V~LD~p~-P~~~l~~~~~~LKpG--------G~lv~~~ 212 (324)
T d2b25a1 176 IK----SLTFDAVALDMLN-PHVTLPVFYPHLKHG--------GVCAVYV 212 (324)
T ss_dssp ---------EEEEEECSSS-TTTTHHHHGGGEEEE--------EEEEEEE
T ss_pred cC----CCCcceEeecCcC-HHHHHHHHHHhccCC--------CEEEEEe
Confidence 22 3579999999987 356889999999986 5777664
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.03 E-value=1.7e-10 Score=114.86 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHc--CCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLN--KLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklN--gl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
+++|++|||+|||+|.+++.+|+. | ++|+++|+++++++.+++|++.- ...+++.+.++|+.+.- + +..
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~---~---~~~ 167 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE---L---PDG 167 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC---C---CTT
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc---c---cCC
Confidence 789999999999999999999986 3 59999999999999999999863 34445999999997641 1 256
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.||.|++|.|.- .++++.+.++|+++ +++-||+
T Consensus 168 ~fDaV~ldlp~P-~~~l~~~~~~LkpG--------G~lv~~~ 200 (264)
T d1i9ga_ 168 SVDRAVLDMLAP-WEVLDAVSRLLVAG--------GVLMVYV 200 (264)
T ss_dssp CEEEEEEESSCG-GGGHHHHHHHEEEE--------EEEEEEE
T ss_pred CcceEEEecCCH-HHHHHHHHhccCCC--------CEEEEEe
Confidence 899999999874 68889999999987 5676665
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.02 E-value=1.2e-09 Score=108.95 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=89.0
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
+++++. +++|++|||+|||.|.+++.+|++ |++|+|+|++++.++++++.++..++.+++.+...|.+++
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~------- 114 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------- 114 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-------
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh-------
Confidence 455554 779999999999999999999986 8999999999999999999999999988899999998764
Q ss_pred hcCCcccEEEeCC-----Cc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 495 QKAHKITQVVMNL-----PN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 495 ~~~~~fD~VVmNp-----P~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.++||.|++-- +. .-..|+..+.++|+++ |.+-++....
T Consensus 115 --~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg--------G~~~i~~i~~ 159 (280)
T d2fk8a1 115 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD--------GRMTVQSSVS 159 (280)
T ss_dssp --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT--------CEEEEEEEEC
T ss_pred --ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC--------ceEEEEEeec
Confidence 36799998621 11 2257899999999987 4665555443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=1.5e-09 Score=108.70 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=87.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +++|++|||+|||.|.+++.+|++ |++|+|+.++++-++++++.++..++.+++++..+|.+++
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-------- 124 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-------- 124 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------
T ss_pred HHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--------
Confidence 44443 789999999999999999998875 8999999999999999999999999998999999998764
Q ss_pred cCCcccEEEeC-CC-----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 496 KAHKITQVVMN-LP-----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 496 ~~~~fD~VVmN-pP-----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+++||.|+.- -- ..-..|+..+.++|+++ |.+-++.++
T Consensus 125 -~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg--------G~~~l~~i~ 168 (285)
T d1kpga_ 125 -DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD--------GVMLLHTIT 168 (285)
T ss_dssp -CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT--------CEEEEEEEE
T ss_pred -cccccceeeehhhhhcCchhHHHHHHHHHhhcCCC--------CcEEEEEEe
Confidence 3679988851 11 11257899999999987 455555554
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.99 E-value=1.6e-09 Score=108.87 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=82.2
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..+++. +++|++|||+|||.|.+++.+|++ |++|++++++++.++++++.++..++.+++.+..+|.+..
T Consensus 51 ~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~------- 123 (291)
T d1kpia_ 51 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------- 123 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-------
T ss_pred HHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc-------
Confidence 345554 789999999999999999998864 8999999999999999999999999999999999997532
Q ss_pred hcCCcccEEEeC-------CCcc------hHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMN-------LPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmN-------pP~~------a~eFLdaa~~lLk~~ 525 (600)
.++||+|+.- .+.. -..|+..+.++|+++
T Consensus 124 --~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg 165 (291)
T d1kpia_ 124 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD 165 (291)
T ss_dssp --CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred --ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence 4689999851 1111 147899999999987
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.99 E-value=3.8e-10 Score=108.20 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++++|++|.+|+|+|+|+.|++.|++++..+++. ++++++|+.++. ..++||.|+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~--v~~~~~d~~~~~-------~~~~fD~i~ 106 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLN-------INRKFDLIT 106 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCC--CEEECCCGGGCC-------CSCCEEEEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCcc--ceeeccchhhhc-------ccccccccc
Confidence 45678999999999999999999999999999999999999999998873 899999998863 246899998
Q ss_pred eC--C----C--cchHHHHHHHHHHhcCC
Q 007525 505 MN--L----P--NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mN--p----P--~~a~eFLdaa~~lLk~~ 525 (600)
+- . + .....++..+.+.|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 135 (246)
T d1y8ca_ 107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred eeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence 62 1 1 12245788888888876
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.97 E-value=3.4e-10 Score=102.56 Aligned_cols=97 Identities=9% Similarity=-0.070 Sum_probs=75.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC-----------CCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL-----------EKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl-----------~nrV~~i~gDare~l~~l~ 492 (600)
+.+|.+|||+|||+|..++.+|++|..|+|+|+|+.+++.++++++..+. ...+.++++|+.+.....
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~- 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD- 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc-
Confidence 77899999999999999999999999999999999999999999865432 123578888887764332
Q ss_pred HhhcCCcccEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
...||.|+..--. .-..++..+.++++++
T Consensus 97 ----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg 131 (201)
T d1pjza_ 97 ----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131 (201)
T ss_dssp ----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred ----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC
Confidence 2468988763221 1246788888889886
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=5.3e-10 Score=112.53 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=80.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.+|++|||+|||+|.+++.||+.| .+|+|+|.++. ...++++++.|++.++|+++++|+.+... +..++|.
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~D~ 103 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDI 103 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc------ccceeEE
Confidence 4579999999999999999999998 48999999986 57788999999999899999999988631 2468999
Q ss_pred EEeCCCcc-------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND-------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~-------a~eFLdaa~~lLk~~ 525 (600)
|+++.... -..++.+..++|+++
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~ 133 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKWLAPD 133 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhcCCCC
Confidence 99876542 246888889999986
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=6e-10 Score=106.69 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=79.5
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHH
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~ 493 (600)
++++. +++|++|||+|||+|+++..+|+. .++|+++|+++++++.+++|++.+++.| +.++++|+.+...
T Consensus 66 ~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~---- 140 (213)
T d1dl5a1 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP---- 140 (213)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG----
T ss_pred HHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHccc----
Confidence 44443 789999999999999999999985 3599999999999999999999999986 8899999987542
Q ss_pred hhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 494 SQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
....||+|+++-... .+.+.+.+.|+++
T Consensus 141 --~~~~fD~I~~~~~~~--~~p~~l~~~LkpG 168 (213)
T d1dl5a1 141 --EFSPYDVIFVTVGVD--EVPETWFTQLKEG 168 (213)
T ss_dssp --GGCCEEEEEECSBBS--CCCHHHHHHEEEE
T ss_pred --cccchhhhhhhccHH--HhHHHHHHhcCCC
Confidence 135799999975322 2335667788886
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.4e-09 Score=108.80 Aligned_cols=95 Identities=21% Similarity=0.108 Sum_probs=78.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.+|.+|||+|||+|.+++.||+.|+ +|+|+|.|+.+.. ++++++.|+..++++++++|+.+... +..+||+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~~D~ 105 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDV 105 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC------ccccceE
Confidence 55799999999999999999999985 9999999998764 67778888888889999999988631 2468999
Q ss_pred EEeCCCcch-------HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-------TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-------~eFLdaa~~lLk~~ 525 (600)
|+.++.... ..++.+..++|+++
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~ 135 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKG 135 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCC
Confidence 999876531 35667777888876
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.5e-10 Score=105.03 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.++..++++ +.+|+|+|+++.+++.|++++..++..+ ++++++|+.++.. +.++||.|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~------~~~~fD~I 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTP------EPDSYDVI 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCC------CSSCEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccc-ccccccccccccc------cccccccc
Confidence 46789999999999999998765 5699999999999999999999888775 8999999998641 25789999
Q ss_pred EeCC-----Ccc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNL-----PND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNp-----P~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.- |.. ..+++..+.++|+++ |.+.+.++..
T Consensus 132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk~~--------G~~~i~~~~~ 169 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLRRCKGSLRPN--------GIIVIKDNMA 169 (222)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEB
T ss_pred ccccccccchhhhhhhHHHHHHHhcCCc--------ceEEEEEccc
Confidence 9742 221 246899999999986 5666665544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.91 E-value=9.6e-10 Score=106.35 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=81.1
Q ss_pred HHh-cCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLS-GFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~-~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+++ .+.+|.+|||+|||+|.++..+++.+ ++|+|+|+|+.+++.|++.++.++...++.++++|+..... ...
T Consensus 17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~-----~~~ 91 (252)
T d1ri5a_ 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM-----DLG 91 (252)
T ss_dssp HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC-----CCS
T ss_pred HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc-----ccc
Confidence 444 37789999999999999999999876 58999999999999999999988887679999999864321 024
Q ss_pred CcccEEEeCCC--------cchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLP--------NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP--------~~a~eFLdaa~~lLk~~ 525 (600)
..||.|++.-- .....++..+.++|+++
T Consensus 92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g 127 (252)
T d1ri5a_ 92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127 (252)
T ss_dssp SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC
Confidence 57999987532 22346888889999886
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=1.7e-09 Score=109.14 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=79.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..+|.+|||+|||+|.+++.||+.|+ +|+|+|.++ +++.++++++.|++.++++++++|+.+... +..++|+
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~~~D~ 108 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDI 108 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------cccceeE
Confidence 34799999999999999999999985 999999997 568999999999999889999999987631 3568999
Q ss_pred EEeCCCcc-------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND-------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~-------a~eFLdaa~~lLk~~ 525 (600)
|++++... ...++.+..++|+++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg 138 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCC
Confidence 99876542 245677778999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.87 E-value=3e-09 Score=101.57 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=86.4
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+..|||+|||.|.+++.+|+. ...++|+|+++.++..+.++++.++++| +.++++|+.++... + +...+|.|
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~-~---~~~~~~~i 105 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDY-F---EDGEIDRL 105 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGT-S---CTTCCSEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhh-c---cCCceehh
Confidence 4678999999999999999997 4699999999999999999999999997 99999999887632 2 35679999
Q ss_pred EeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.++.|.- ..+||+.+.++|+++ |.+|+-+
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg--------G~l~i~T 146 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN--------GEIHFKT 146 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT--------CEEEEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCC--------cEEEEEE
Confidence 8876631 258999999999987 5888743
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=3.4e-09 Score=101.15 Aligned_cols=107 Identities=11% Similarity=-0.022 Sum_probs=83.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC----------------CCCcEEEEEcChHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK----------------LEKKIEVFNMDGRRF 487 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg----------------l~nrV~~i~gDare~ 487 (600)
..++.+|||+|||.|..++.+|++|..|+|+|+++.|++.++++..... ...+++++++|..+.
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 5678899999999999999999999999999999999999998865432 123589999999887
Q ss_pred HHHHHHhhcCCcccEEEe------CCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 488 IDAMFASQKAHKITQVVM------NLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 488 l~~l~~~~~~~~fD~VVm------NpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
... ....||.|+. -+|.....++..+.++++++ |++.+.+|..
T Consensus 123 ~~~-----~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg--------G~~~l~~~~~ 171 (229)
T d2bzga1 123 PRT-----NIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK--------FQYLLCVLSY 171 (229)
T ss_dssp GGS-----CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE--------EEEEEEEEEC
T ss_pred ccc-----ccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc--------ceEEEEEccc
Confidence 532 2467898873 23444567899999999987 4555555554
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=2.9e-09 Score=100.21 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=71.6
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+.++.+|||+|||+|.++..++++|++|+|+|+++.+++.+++| +.. .++++|+.+.. + +.++||.
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~----~~~---~~~~~~~~~l~---~---~~~~fD~ 105 (246)
T d2avna1 39 YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK----GVK---NVVEAKAEDLP---F---PSGAFEA 105 (246)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH----TCS---CEEECCTTSCC---S---CTTCEEE
T ss_pred hcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccc----ccc---ccccccccccc---c---ccccccc
Confidence 367788999999999999999999999999999999999999876 233 25678887752 1 2578999
Q ss_pred EEe-CCC----cchHHHHHHHHHHhcCC
Q 007525 503 VVM-NLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVm-NpP----~~a~eFLdaa~~lLk~~ 525 (600)
|++ ..- ....++|..+.++|+++
T Consensus 106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~g 133 (246)
T d2avna1 106 VLALGDVLSYVENKDKAFSEIRRVLVPD 133 (246)
T ss_dssp EEECSSHHHHCSCHHHHHHHHHHHEEEE
T ss_pred eeeecchhhhhhhHHHHHHHHHhhcCcC
Confidence 885 321 12457899999999986
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.79 E-value=5.7e-09 Score=103.04 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=82.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||.|.+++.+|+. +++|+|+|+++.+++.+++|++.+++ ++++.++|+.+.. ..++|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~-------~~~~f 95 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE-------LNDKY 95 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC-------CSSCE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc-------ccCCc
Confidence 567789999999999999999984 57999999999999999999998887 3899999987752 13579
Q ss_pred cEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 501 TQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 501 D~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|+|++.--- ....++..+.++++++ |++.+++
T Consensus 96 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg--------G~lii~~ 131 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPETMLQKMIHSVKKG--------GKIICFE 131 (281)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHTEEEE--------EEEEEEE
T ss_pred eEEEEehhhhcCCCHHHHHHHHHHHcCcC--------cEEEEEE
Confidence 999986432 2357899999999986 5777765
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=5.6e-09 Score=100.02 Aligned_cols=96 Identities=6% Similarity=-0.092 Sum_probs=79.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..+|.+|||+|||+|.++..+|+.+ ++|+++|+||.+++.++++++..+. .+..+.+|+.+....+ +..+||.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~fD~ 124 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL----PDGHFDG 124 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS----CTTCEEE
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--cccccccccccccccc----ccccccc
Confidence 4678999999999999999999875 6899999999999999999887654 4788999988765432 3568999
Q ss_pred EEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
|+.|.... ...++..+.++|+++
T Consensus 125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG 156 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 156 (229)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred eeecccccccccccccCHHHHHHHHHHHcCCC
Confidence 99987643 135888999999987
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=1.4e-08 Score=100.11 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=74.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCC---cEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK---KIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~n---rV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.++.+|||+|||+|.+++++|+.|.+|+|+|+|+.+++.|++++..++... ...+..+|....-..+. ....||
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fd 131 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP---AGDGFD 131 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC---CTTCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC---CCCCce
Confidence 457799999999999999999999999999999999999999998887642 24556666655432211 246799
Q ss_pred EEEeC---C---Cc------chHHHHHHHHHHhcCC
Q 007525 502 QVVMN---L---PN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmN---p---P~------~a~eFLdaa~~lLk~~ 525 (600)
.|++- . |. ....+|..+.++|+++
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 167 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 167 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence 98862 1 11 1346899999999987
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.71 E-value=1.7e-08 Score=95.77 Aligned_cols=89 Identities=7% Similarity=-0.017 Sum_probs=71.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.++..++++|.+|+|+|+|+++++.++.+.. +++.++++|+.++. ..++||.|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~-------~~~~fD~I~ 86 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQ-------LPRRYDNIV 86 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCC-------CSSCEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----cccccccccccccc-------ccccccccc
Confidence 457789999999999999999999999999999999999987642 34899999988753 256899999
Q ss_pred eCCCc----chHHHHHHHH-HHhcCC
Q 007525 505 MNLPN----DATEFLDAFR-GIYRDR 525 (600)
Q Consensus 505 mNpP~----~a~eFLdaa~-~lLk~~ 525 (600)
+.--- ....++..+. ++++++
T Consensus 87 ~~~vleh~~d~~~~l~~i~~~~Lk~g 112 (225)
T d2p7ia1 87 LTHVLEHIDDPVALLKRINDDWLAEG 112 (225)
T ss_dssp EESCGGGCSSHHHHHHHHHHTTEEEE
T ss_pred ccceeEecCCHHHHHHHHHHHhcCCC
Confidence 84321 2356777776 678876
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.6e-08 Score=97.48 Aligned_cols=94 Identities=15% Similarity=0.070 Sum_probs=75.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCC----CcEEEEEcChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLE----KKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~----nrV~~i~gDare~l~~l~~~~~ 496 (600)
+++|++|||+|||+|+.+..+|+. ..+|+++|+++++++.+++|++..++. +++.+..+|+.+... .
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------~ 147 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E 147 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc------h
Confidence 689999999999999999988875 359999999999999999999987763 358999999986542 1
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||+|+++--.. +..+++.+.|+++
T Consensus 148 ~~~fD~I~~~~~~~--~ip~~l~~~LkpG 174 (224)
T d1i1na_ 148 EAPYDAIHVGAAAP--VVPQALIDQLKPG 174 (224)
T ss_dssp GCCEEEEEECSBBS--SCCHHHHHTEEEE
T ss_pred hhhhhhhhhhcchh--hcCHHHHhhcCCC
Confidence 46799999975322 2235677788876
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1e-07 Score=91.75 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=88.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+..+||++|||+|+-++.+|.. +++|+++|.+|+..+.+++|++..|+.++++++.+|+.+.+..+........|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 446789999999999999999975 57999999999999999999999999999999999999999887655445689
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
|.|++|--.. -..+++.+.++++++
T Consensus 137 D~ifiD~dk~~y~~~~~~~~~lL~~G 162 (219)
T d2avda1 137 DVAVVDADKENCSAYYERCLQLLRPG 162 (219)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhcCC
Confidence 9999996544 357788999999886
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.65 E-value=1.8e-08 Score=97.75 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+..+|||+|||+|.+++.++++ +.+++++|+ |.+++.+++++...++.++++++.+|..+.. ...||
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------~~~~D 148 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRKAD 148 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSCEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--------ccchh
Confidence 456789999999999999999987 469999998 7899999999999999888999999986632 35699
Q ss_pred EEEeCC-----Cc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNL-----PN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNp-----P~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|+|.- |. ....+|..+.++|+++ |.+-++++..
T Consensus 149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG--------G~l~i~e~~~ 188 (253)
T d1tw3a2 149 AIILSFVLLNWPDHDAVRILTRCAEALEPG--------GRILIHERDD 188 (253)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEE--------EEEEEEECCB
T ss_pred heeeccccccCCchhhHHHHHHHHHhcCCC--------cEEEEEeccC
Confidence 998752 22 2357899999999986 6888888754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=3e-08 Score=95.48 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
++++. +++|++|||+|||+|+.+..+|+. |.+|+++|.+++.++.+++|++..++.| +.++++|+.+...
T Consensus 69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~gd~~~g~~------ 141 (215)
T d1jg1a_ 69 IMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGFP------ 141 (215)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG------
T ss_pred HHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce-eEEEECccccCCc------
Confidence 44443 789999999999999999999986 6689999999999999999999999986 9999999987542
Q ss_pred cCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
....||.|++.-... ..-+.+...|+++
T Consensus 142 ~~~pfD~Iiv~~a~~--~ip~~l~~qL~~g 169 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAP--KIPEPLIEQLKIG 169 (215)
T ss_dssp GGCCEEEEEECSBBS--SCCHHHHHTEEEE
T ss_pred ccCcceeEEeecccc--cCCHHHHHhcCCC
Confidence 246899999864222 1223455567765
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.62 E-value=2.3e-08 Score=96.85 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=75.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. +++|++|||+|||+|++|..+|+.+++|+++|+++++++.+++|... .. ++.++++|+......
T Consensus 61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~--~~-nv~~~~~d~~~g~~~------ 131 (224)
T d1vbfa_ 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY--YN-NIKLILGDGTLGYEE------ 131 (224)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT--CS-SEEEEESCGGGCCGG------
T ss_pred HHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc--cc-ccccccCchhhcchh------
Confidence 44443 78999999999999999999999999999999999999999998764 34 499999999775321
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+||+|+++-... ...+.+...|+++
T Consensus 132 ~~pfD~Iiv~~a~~--~ip~~l~~qLk~G 158 (224)
T d1vbfa_ 132 EKPYDRVVVWATAP--TLLCKPYEQLKEG 158 (224)
T ss_dssp GCCEEEEEESSBBS--SCCHHHHHTEEEE
T ss_pred hhhHHHHHhhcchh--hhhHHHHHhcCCC
Confidence 36799999864221 2334556778765
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=6.9e-08 Score=92.46 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+..+||++|||.|+.++.+|+. +++|+++|++++.++.+++|++..|+.++|+++.||+.+.++.+.+......||.
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 4579999999999999999974 5799999999999999999999999998999999999999877654333467999
Q ss_pred EEeCCCcchH---HHHHHHHHHhcCC
Q 007525 503 VVMNLPNDAT---EFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a~---eFLdaa~~lLk~~ 525 (600)
|++|--.... ..+....++++++
T Consensus 136 ifiD~~~~~~~~~~~l~~~~~lLkpG 161 (214)
T d2cl5a1 136 VFLDHWKDRYLPDTLLLEKCGLLRKG 161 (214)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred eeecccccccccHHHHHHHhCccCCC
Confidence 9999544322 1244455567765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.56 E-value=3.2e-08 Score=96.55 Aligned_cols=101 Identities=9% Similarity=-0.065 Sum_probs=78.4
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.++..++.+ +..|+++|+++.+++.|++++... . .++++++|+.++.. ..++||.|
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--~-~~~~~~~d~~~~~~------~~~~fD~I 162 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--P-VGKFILASMETATL------PPNTYDLI 162 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--S-EEEEEESCGGGCCC------CSSCEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--c-cceeEEcccccccc------CCCccceE
Confidence 45779999999999999988866 568999999999999999876432 2 48999999988631 24689999
Q ss_pred EeCCCcc------hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 504 VMNLPND------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 504 VmNpP~~------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
++...-. ..+++..+.++|+++ |+|.+.+..
T Consensus 163 ~~~~vl~hl~d~d~~~~l~~~~~~Lkpg--------G~iii~e~~ 199 (254)
T d1xtpa_ 163 VIQWTAIYLTDADFVKFFKHCQQALTPN--------GYIFFKENC 199 (254)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEB
T ss_pred EeeccccccchhhhHHHHHHHHHhcCCC--------cEEEEEecC
Confidence 9865431 247889999999886 466665543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=1.4e-07 Score=89.14 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=85.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|++++|++||.|.++..++++ +++|+|+|.+++|++.++++.+..+ +++.+++++..++-.. ........+|
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~-~~~~~~~~vd 97 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFL-LKTLGIEKVD 97 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHH-HHHTTCSCEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHH-HHHcCCCCcc
Confidence 578999999999999999999885 5799999999999999999987654 4699999988765432 2221246899
Q ss_pred EEEeCCCcchH-------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 502 QVVMNLPNDAT-------------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 ~VVmNpP~~a~-------------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.|++|+..++. +.|+.+.++++++ |.+.|..|...
T Consensus 98 gIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g--------G~l~ii~f~s~ 145 (192)
T d1m6ya2 98 GILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG--------GRIVVISFHSL 145 (192)
T ss_dssp EEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE--------EEEEEEESSHH
T ss_pred eeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC--------CeeeeeccccH
Confidence 99999987542 4566666666654 67888888653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.53 E-value=7.3e-08 Score=96.47 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=82.1
Q ss_pred eecChhHHHH-HHHHh-c--CCCCCeEEEEeeechHHHHHHhhC----C---CEEEEEeCcHHHHHHHHHHHHHcCCCCc
Q 007525 408 YWNSKLATER-QRLLS-G--FNFKDVVCDVFAGVGPICIPAAKI----V---KRVYANDLNPYAVDYLERNSVLNKLEKK 476 (600)
Q Consensus 408 y~n~Rl~tEr-~Riv~-~--l~~ge~VLDlfAGvG~FaIpaAkk----g---~~V~AvDiNP~Ave~l~eNaklNgl~nr 476 (600)
|+.|+..++- ..++. . .+++.+|+|.+||+|.|.+.++.+ + ..++|+|+++.+++.++.|+..++..
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-- 172 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-- 172 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--
T ss_pred EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--
Confidence 4567765543 12222 1 356788999999999999998742 2 37999999999999999999999886
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch----------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA----------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a----------------------~eFLdaa~~lLk~~ 525 (600)
..++++|..... ...+||.||+|||+.. .-|+..+...++++
T Consensus 173 ~~~~~~d~~~~~-------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 236 (328)
T d2f8la1 173 MTLLHQDGLANL-------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG 236 (328)
T ss_dssp CEEEESCTTSCC-------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred hhhhcccccccc-------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCC
Confidence 467888865432 3568999999999841 13788888888875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=6.4e-08 Score=89.71 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=74.7
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
+++..+.++..|||+|||+|.++.++++ ++|+|+++.+++.++++ +++++++|+.+... +.+
T Consensus 29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~----~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~------~~~ 90 (208)
T d1vlma_ 29 QAVKCLLPEGRGVEIGVGTGRFAVPLKI----KIGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KDE 90 (208)
T ss_dssp HHHHHHCCSSCEEEETCTTSTTHHHHTC----CEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CTT
T ss_pred HHHHhhCCCCeEEEECCCCcccccccce----EEEEeCChhhccccccc--------cccccccccccccc------ccc
Confidence 3444456777999999999999988853 68999999999998864 37899999987631 257
Q ss_pred cccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 499 KITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 499 ~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+||+|++.--- ....++..+.++|+++ |.+.+.+..
T Consensus 91 ~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pg--------G~l~i~~~~ 130 (208)
T d1vlma_ 91 SFDFALMVTTICFVDDPERALKEAYRILKKG--------GYLIVGIVD 130 (208)
T ss_dssp CEEEEEEESCGGGSSCHHHHHHHHHHHEEEE--------EEEEEEEEC
T ss_pred cccccccccccccccccccchhhhhhcCCCC--------ceEEEEecC
Confidence 89999985321 2457899999999986 466665543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3e-07 Score=92.97 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=74.6
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHc-------CCC-CcEEEEEcChHH
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLN-------KLE-KKIEVFNMDGRR 486 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklN-------gl~-nrV~~i~gDare 486 (600)
.+++. ++++++|+|+|||+|.+++.+|+. ++ +|+|+|+++.+++.++++++.. |+. .+++++++|+.+
T Consensus 142 ~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~ 221 (328)
T d1nw3a_ 142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221 (328)
T ss_dssp HHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred HHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence 44543 788999999999999999999875 54 8999999999999999887653 222 359999999976
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcch---HHHHHHHHHHhcCC
Q 007525 487 FIDAMFASQKAHKITQVVMNLPNDA---TEFLDAFRGIYRDR 525 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~a---~eFLdaa~~lLk~~ 525 (600)
..-.-. ...+|+|++|--.+. ...|.++.+.++++
T Consensus 222 ~~~~~~----~~~advi~~~~~~f~~~~~~~l~e~~r~LKpG 259 (328)
T d1nw3a_ 222 EEWRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEG 259 (328)
T ss_dssp HHHHHH----HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTT
T ss_pred cccccc----cCcceEEEEcceecchHHHHHHHHHHHhCCCC
Confidence 531100 013688888644333 34566677777765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.46 E-value=7.3e-07 Score=86.25 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=86.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh-cCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ-KAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~-~~~~ 499 (600)
..+..+||++|+|+|+-++.+|+. +++|+++|.+|+.++.+++|++..|+.++|+++.+|+.+.+..+.+.+ ..+.
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 345679999999999999999963 579999999999999999999999999999999999999998875431 1457
Q ss_pred ccEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
||.|++|-=.. -..+++.+..+++++
T Consensus 137 fD~iFiDa~k~~y~~~~e~~~~ll~~g 163 (227)
T d1susa1 137 YDFIFVDADKDNYLNYHKRLIDLVKVG 163 (227)
T ss_dssp BSEEEECSCSTTHHHHHHHHHHHBCTT
T ss_pred eeEEEeccchhhhHHHHHHHHhhcCCC
Confidence 99999995433 357888999999886
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.44 E-value=2.2e-07 Score=90.53 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=85.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+..+|||+|||.|.+++.++++ ..+++++|+ |+.++.++++++..++.+++++..+|..+.. +..+|
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~--------p~~~D 149 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVTAD 149 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCCEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc--------cccch
Confidence 456789999999999999999997 469999998 8999999999999999989999999987532 34699
Q ss_pred EEEeC-----CCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMN-----LPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmN-----pP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|+|. .|. ....+|..+.++++++ +++-++++..
T Consensus 150 ~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg--------G~llI~d~~~ 189 (256)
T d1qzza2 150 VVLLSFVLLNWSDEDALTILRGCVRALEPG--------GRLLVLDRAD 189 (256)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEECCH
T ss_pred hhhccccccccCcHHHHHHHHHHHhhcCCc--------ceeEEEEecc
Confidence 98874 332 2457899999999986 6888888753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.38 E-value=1.1e-07 Score=93.64 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=66.9
Q ss_pred CeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC--------CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl--------~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+|||++||.|..|+.+|..|++|+++|-||.....+++|++.... .++++++++|+.+++..+ ...
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----~~~ 164 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----TPR 164 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----SSC
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----CCC
Confidence 4899999999999999999999999999999999999988876432 236999999999998642 356
Q ss_pred ccEEEeCCCc
Q 007525 500 ITQVVMNLPN 509 (600)
Q Consensus 500 fD~VVmNpP~ 509 (600)
||+|++||++
T Consensus 165 ~DvIYlDPMF 174 (250)
T d2oyra1 165 PQVVYLDPMF 174 (250)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999987
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=3.1e-07 Score=89.79 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=74.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..++..|||+|||+|.++..+++. +..|+|+|+++.+++.++++. . ++.++++|+.+.. + ..+.||
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~-~~~~~~~d~~~l~---~---~~~sfD 149 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----P-QVTFCVASSHRLP---F---SDTSMD 149 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTSCS---B---CTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----c-cccceeeehhhcc---C---CCCCEE
Confidence 357789999999999999999987 469999999999999988752 3 3889999998753 1 257899
Q ss_pred EEEeCC-CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNL-PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNp-P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++.. |. .+.++.++|+++ |++-+.....
T Consensus 150 ~v~~~~~~~----~~~e~~rvLkpg--------G~l~~~~p~~ 180 (268)
T d1p91a_ 150 AIIRIYAPC----KAEELARVVKPG--------GWVITATPGP 180 (268)
T ss_dssp EEEEESCCC----CHHHHHHHEEEE--------EEEEEEEECT
T ss_pred EEeecCCHH----HHHHHHHHhCCC--------cEEEEEeeCC
Confidence 998643 43 357889999986 5666655443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.3e-07 Score=92.70 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=70.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|+-++.+|.. ..+|+|+|+++.-++.+++|++..|+.+ +.+.+.|+..+..... ..+.|
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~---~~~~f 167 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDP---RYHEV 167 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCG---GGTTE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhccccc---cccee
Confidence 578999999999999999988763 4699999999999999999999999997 9999999987532110 12579
Q ss_pred cEEEeCCCcch
Q 007525 501 TQVVMNLPNDA 511 (600)
Q Consensus 501 D~VVmNpP~~a 511 (600)
|.|++|+|.++
T Consensus 168 D~VL~DaPCSg 178 (293)
T d2b9ea1 168 HYILLDPSCSG 178 (293)
T ss_dssp EEEEECCCCCC
T ss_pred eEEeecCcccc
Confidence 99999999754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.33 E-value=5.2e-07 Score=86.92 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=72.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----C----CEEEEEeCcHHHHHHHHHHHHHc-----CCCCcEEEEEcChHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----V----KRVYANDLNPYAVDYLERNSVLN-----KLEKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g----~~V~AvDiNP~Ave~l~eNaklN-----gl~nrV~~i~gDare~l~~ 490 (600)
+++|++|||+|||+|+++..+|+. | .+|+++|++++.++.+++|+..+ ++.| +.++++|+.+...
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n-v~~~~~d~~~~~~- 155 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ-LLIVEGDGRKGYP- 155 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS-EEEEESCGGGCCG-
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE-EEEEecccccccc-
Confidence 679999999999999999888874 2 38999999999999999997654 3444 9999999987542
Q ss_pred HHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
....||+|+++-... +.-+.+...|+++
T Consensus 156 -----~~~~fD~Iiv~~a~~--~~p~~l~~~Lk~g 183 (223)
T d1r18a_ 156 -----PNAPYNAIHVGAAAP--DTPTELINQLASG 183 (223)
T ss_dssp -----GGCSEEEEEECSCBS--SCCHHHHHTEEEE
T ss_pred -----cccceeeEEEEeech--hchHHHHHhcCCC
Confidence 246799999864322 1224556777765
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.32 E-value=3e-07 Score=89.33 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=72.9
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.++++. +.+++.||++|||.|.++..+++.+++|+|+|+++..++.++++...+ . +++++++|+.++--
T Consensus 11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~--~-n~~i~~~D~l~~~~------ 81 (235)
T d1qama_ 11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH--D-NFQVLNKDILQFKF------ 81 (235)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC--C-SEEEECCCGGGCCC------
T ss_pred HHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc--c-chhhhhhhhhhccc------
Confidence 467765 568999999999999999999999999999999999999999876432 3 49999999988621
Q ss_pred cCCcccEEEeCCCcch-HHHHHHH
Q 007525 496 KAHKITQVVMNLPNDA-TEFLDAF 518 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a-~eFLdaa 518 (600)
+......||.|+|+.. -..+..+
T Consensus 82 ~~~~~~~vv~NLPYnIss~il~~l 105 (235)
T d1qama_ 82 PKNQSYKIFGNIPYNISTDIIRKI 105 (235)
T ss_dssp CSSCCCEEEEECCGGGHHHHHHHH
T ss_pred cccccceeeeeehhhhhHHHHHHH
Confidence 1233467999999964 3444443
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=1.2e-06 Score=91.52 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=68.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCC-------C-CcEEE-EEcChHH--HHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKL-------E-KKIEV-FNMDGRR--FIDA 490 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl-------~-nrV~~-i~gDare--~l~~ 490 (600)
+++|++|||+|||+|.+++.+|+. |+ +|+|+|+++.+++.|+++++..+. . +.+.. +.+|..+ ....
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 789999999999999999999986 55 899999999999999999986431 1 12333 3344332 2222
Q ss_pred HHHhhcCCcccEEEeCCCc---chHHHHHHHHHHhcCC
Q 007525 491 MFASQKAHKITQVVMNLPN---DATEFLDAFRGIYRDR 525 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~---~a~eFLdaa~~lLk~~ 525 (600)
.+ ..+|+|++|--. .....|.++.+.|++|
T Consensus 294 ~~-----~~adVV~inn~~f~~~l~~~L~ei~r~LKPG 326 (406)
T d1u2za_ 294 LI-----PQCDVILVNNFLFDEDLNKKVEKILQTAKVG 326 (406)
T ss_dssp HG-----GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT
T ss_pred cc-----ccceEEEEecccCchHHHHHHHHHHHhcCCC
Confidence 22 357889887322 2345677778888876
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.27 E-value=5.4e-06 Score=82.00 Aligned_cols=107 Identities=11% Similarity=0.022 Sum_probs=85.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHc---------CCCCcEEEEEcChHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLN---------KLEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklN---------gl~nrV~~i~gDare~l~~l~~ 493 (600)
......||.+|+|.|..+..+++.. .+|+++|++|..++.+++-...+ .-..+++++.+|++++++.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--- 146 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--- 146 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---
Confidence 4567899999999999999888875 58999999999999999755333 2345799999999999863
Q ss_pred hhcCCcccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 494 SQKAHKITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
..+||+||+|++.. ..+|+..+.+.|+++ |++-+.+.+..
T Consensus 147 ---~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~--------Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 147 ---NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP--------GIYVTQAGSVY 194 (276)
T ss_dssp ---CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE--------EEEEEEEEETT
T ss_pred ---cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC--------ceEEEecCCcc
Confidence 46799999988652 368999999999986 56666655544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=9.7e-07 Score=85.64 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=77.7
Q ss_pred CeEEEEeeechHHHHHHhhC--------CCEEEEEeCcHHHHHHHHHHHHHcC-CCC-cEEEEEcChHHHHHHHHHhhcC
Q 007525 428 DVVCDVFAGVGPICIPAAKI--------VKRVYANDLNPYAVDYLERNSVLNK-LEK-KIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkk--------g~~V~AvDiNP~Ave~l~eNaklNg-l~n-rV~~i~gDare~l~~l~~~~~~ 497 (600)
-+|||+|||+|.++..+++. +..++|+|+|+.+++.+++++.... +.+ .+.+.+.++.++..........
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 37999999999999887653 2378999999999999999976543 333 2455677777665433222235
Q ss_pred CcccEEEeCCC----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 498 HKITQVVMNLP----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 498 ~~fD~VVmNpP----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.+||+|++.-- .....+|..+.++|+++ |++.+.++..
T Consensus 122 ~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg--------G~l~i~~~~~ 163 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN--------AKMLIIVVSG 163 (280)
T ss_dssp CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE--------EEEEEEEECT
T ss_pred CceeEEEEccceecCCCHHHHHHHHHhhCCCC--------CEEEEEEecC
Confidence 78999998322 12457899999999986 5777777654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.2e-07 Score=86.25 Aligned_cols=51 Identities=16% Similarity=-0.065 Sum_probs=44.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLE 474 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~ 474 (600)
..+|.+|||+|||+|.+++.+++.+. .|+|+|+++.+++.++++++.++..
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~ 100 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA 100 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTC
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcccc
Confidence 34678999999999999988887765 7999999999999999999887654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=1e-05 Score=81.36 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=91.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHH-cC-C--CCcEEEEEcChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVL-NK-L--EKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNakl-Ng-l--~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
....+.||.+|.|.|..+..+++.. .+|+++|++|+.++.+++.... |+ . +.+++++.+|+++++.. ..
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-----~~ 149 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-----TE 149 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-----CC
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-----cC
Confidence 3456799999999999999998863 5999999999999999998743 22 1 34799999999999864 25
Q ss_pred CcccEEEeCCCc-----------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 498 HKITQVVMNLPN-----------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 498 ~~fD~VVmNpP~-----------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
.+||+||+|++. .+.+|+..+.+.|+++ |++-+..-+..... .++...+.+.+.+.
T Consensus 150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~--------Gvlv~~~~s~~~~~-~~~~~~i~~tl~~~ 216 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG--------GVMGMQTGMILLTH-HRVHPVVHRTVREA 216 (312)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE--------EEEEEEEEEECC----CHHHHHHHHHHTT
T ss_pred CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC--------ceEEEecCCcccch-HHHHHHHHHHHHHh
Confidence 689999998732 1368999999999986 45554432222111 13555565556554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.9e-06 Score=85.75 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=75.1
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+|++. +.+++.|+++|+|.|.++..+++++++|+|+|+++..++.+++....+...++++++++|+.++-
T Consensus 12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-------- 83 (278)
T d1zq9a1 12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-------- 83 (278)
T ss_dssp HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC--------
T ss_pred HHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh--------
Confidence 45543 56899999999999999999999999999999999999999999887766667999999997752
Q ss_pred CCcccEEEeCCCcch-HHHHHH
Q 007525 497 AHKITQVVMNLPNDA-TEFLDA 517 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a-~eFLda 517 (600)
...++.||-|+|+.. -..+..
T Consensus 84 ~~~~~~vV~NLPY~Iss~il~~ 105 (278)
T d1zq9a1 84 LPFFDTCVANLPYQISSPFVFK 105 (278)
T ss_dssp CCCCSEEEEECCGGGHHHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHHH
Confidence 234678999999964 334433
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=2.9e-06 Score=84.19 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=66.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|+.|||+|||-|+=++.+|..+ ..|+|+|+++.-++.+++|++..|+.+ +.+...|.... ... ....||
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~-~~~----~~~~fd 173 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPS-QWC----GEQQFD 173 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTH-HHH----TTCCEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccc-hhc----cccccc
Confidence 6789999999999999999988753 589999999999999999999999986 55555554332 211 246799
Q ss_pred EEEeCCCcc
Q 007525 502 QVVMNLPND 510 (600)
Q Consensus 502 ~VVmNpP~~ 510 (600)
.|++|+|.+
T Consensus 174 ~IL~DaPCS 182 (284)
T d1sqga2 174 RILLDAPCS 182 (284)
T ss_dssp EEEEECCCC
T ss_pred EEEEecccc
Confidence 999999985
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.13 E-value=3.6e-06 Score=84.69 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||-|+=++.+|.. .+.|+|+|+++.-++.+++|++..++.| +.+++.|...+-. ....|
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~------~~~~f 186 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGE------LNVEF 186 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGG------GCCCE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccccccc------ccccc
Confidence 678999999999999988888753 3589999999999999999999999986 8888889876531 25679
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|.|++|+|.+
T Consensus 187 D~ILvDaPCS 196 (313)
T d1ixka_ 187 DKILLDAPCT 196 (313)
T ss_dssp EEEEEECCTT
T ss_pred cEEEEccccc
Confidence 9999999974
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.08 E-value=1.6e-06 Score=90.22 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=84.4
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC----C-----------CEEEEEeCcHHHHHHHHHHHH
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI----V-----------KRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk----g-----------~~V~AvDiNP~Ave~l~eNak 469 (600)
-|+.|+...+ .|++. ...+.+|+|.+||+|.|.+.+.++ + ..++|+|+++.++..++-|+.
T Consensus 143 ~f~TP~~Iv~--~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 143 QYFTPRPLIQ--AMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp GGCCCHHHHH--HHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hhccchhhhH--hhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 3667775543 33443 346889999999999999998863 1 249999999999999999999
Q ss_pred HcCCCC-cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------------HHHHHHHHHHhcCC
Q 007525 470 LNKLEK-KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 470 lNgl~n-rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------------~eFLdaa~~lLk~~ 525 (600)
++++.. ...+.++|..+.. ...+||.||+|||... ..|+..+...++++
T Consensus 221 l~g~~~~~~~i~~~d~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 291 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 291 (425)
T ss_dssp HTTCCSSCCSEEECCTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred hcCCccccceeecCchhhhh-------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence 998853 3567788875431 3567999999999842 25999999999875
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.00 E-value=2.4e-05 Score=73.01 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..+|.+++|+.+|.|+.+..+.+++++|+|+|.+|+|++.+++. ...++.+++++..++-..+... ..+.+|.|
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~-~~~~vdgI 89 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAAL-GVERVDGI 89 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHT-TCSCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHc-CCCccCEE
Confidence 57899999999999999999999888999999999999888752 2346999999887764432221 24579999
Q ss_pred EeCCCcchH-------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPNDAT-------------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~~a~-------------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++|+-.++. ..|+.+..+++++ +.+-|..|..
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g--------g~~~ii~fhs 134 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG--------GRLVVIAFHS 134 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE--------EEEEEEECSH
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC--------CeEEEEeccc
Confidence 999966443 2567777777765 5778888854
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=9.2e-06 Score=75.10 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=54.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++++|+|.|||+|.|.++++++ ...++++|+++.++. +..+..++++|..... ....|
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~~~-------~~~~f 79 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLLWE-------PGEAF 79 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGGCC-------CSSCE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhccc-------ccccc
Confidence 567899999999999999988763 468999999997653 2223577888876542 24689
Q ss_pred cEEEeCCCc
Q 007525 501 TQVVMNLPN 509 (600)
Q Consensus 501 D~VVmNpP~ 509 (600)
|.|++|||.
T Consensus 80 d~ii~npP~ 88 (223)
T d2ih2a1 80 DLILGNPPY 88 (223)
T ss_dssp EEEEECCCC
T ss_pred ceecccCcc
Confidence 999999996
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=8.2e-05 Score=74.26 Aligned_cols=107 Identities=8% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
-.....||-+|.|.|..+-.+++.. .+|+++||+|..++.+++-...+. + +.+++++.+|+++++++ ...
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-----~~~ 161 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-----FKN 161 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-----CSS
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-----CCC
Confidence 3456799999999999999999863 589999999999999999776543 2 34799999999999864 356
Q ss_pred cccEEEeCCCcc---------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 499 KITQVVMNLPND---------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 499 ~fD~VVmNpP~~---------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+||+||+|++.. ..+|+..+.+.|+++ |++-+.+-+.
T Consensus 162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~--------Gi~v~q~~sp 207 (295)
T d1inla_ 162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED--------GVFSAETEDP 207 (295)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEEEE--------EEEEEECCCT
T ss_pred CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC--------cEEEEecCCh
Confidence 899999987541 368999999999986 5666665444
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=5.6e-06 Score=81.10 Aligned_cols=88 Identities=15% Similarity=0.257 Sum_probs=67.6
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-HHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-DAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l-~~l~~~~ 495 (600)
+|++. ..+++.|+++|||.|.++-.+++++++|+|+|+++..++.+++....+ ++++++++|+.++- .++...
T Consensus 12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~~- 87 (252)
T d1qyra_ 12 SIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEK- 87 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHH-
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhcccccccc-
Confidence 45544 568999999999999999999999999999999999999998743222 35999999998752 222111
Q ss_pred cCCcccEEEeCCCcch
Q 007525 496 KAHKITQVVMNLPNDA 511 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a 511 (600)
....-.|+-|+|+..
T Consensus 88 -~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 88 -MGQPLRVFGNLPYNI 102 (252)
T ss_dssp -HTSCEEEEEECCTTT
T ss_pred -cCCCeEEEecchHHH
Confidence 123457999999974
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=4.3e-05 Score=75.45 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
....+.||-+|.|.|..+-.+++. + .+|+++||+|+.++.+++-...|. + +.+++++.+|++.++.. ...
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~-----~~~ 147 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-----SEN 147 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-----CCS
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-----cCC
Confidence 455689999999999999999986 3 599999999999999999875542 2 23799999999999864 356
Q ss_pred cccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 499 KITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 499 ~fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
+||+||+|++.. ..+|.+.+.+.|+++ |++-..+-+...+ .+....+.+.+.+.
T Consensus 148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~--------Gv~v~q~~s~~~~--~~~~~~i~~tl~~~ 209 (274)
T d1iy9a_ 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED--------GIFVAQTDNPWFT--PELITNVQRDVKEI 209 (274)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE--------EEEEEECCCTTTC--HHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC--------ceEEEecCCcccc--HHHHHHHHHhhhhh
Confidence 899999998652 579999999999986 4555544333222 23344455555543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.92 E-value=1.9e-06 Score=84.60 Aligned_cols=98 Identities=15% Similarity=0.013 Sum_probs=70.9
Q ss_pred hhHHHH-HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC----------------------------------------
Q 007525 412 KLATER-QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV---------------------------------------- 448 (600)
Q Consensus 412 Rl~tEr-~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg---------------------------------------- 448 (600)
++..|- .+++.. ...+..++|.|||+|+|.|.||..+
T Consensus 33 ~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~ 112 (249)
T d1o9ga_ 33 RLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 112 (249)
T ss_dssp HHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence 445454 344332 3445579999999999999998632
Q ss_pred --CEEEEEeCcHHHHHHH---HHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 449 --KRVYANDLNPYAVDYL---ERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 449 --~~V~AvDiNP~Ave~l---~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
..+++.|+++.+++.+ ++|++..|+.+.|.+.+.|+++....... ......++||+|||+.
T Consensus 113 ~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~-~~~~~~GlIVtNPPYG 178 (249)
T d1o9ga_ 113 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV-LAGSAPDVVLTDLPYG 178 (249)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-HTTCCCSEEEEECCGG
T ss_pred ccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhc-cCCCCCCEEEeCCCcc
Confidence 1357899999999988 57999999998899999998765321110 1245678999999994
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00013 Score=72.47 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=91.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
....+.||-+|.|.|..+-.+.+. ..+|+.+||+|..++.+++-...|. . +.+++++.+||+++++. ...
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-----~~~ 150 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-----NQD 150 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-----CSS
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-----CCC
Confidence 345678999999999999999986 3599999999999999998765432 2 34799999999999964 246
Q ss_pred cccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhh
Q 007525 499 KITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVE 561 (600)
Q Consensus 499 ~fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~ 561 (600)
+||+||+|++.. ..+|+..+.+.|+++ |++-+.+.+...+ .+....+.+.+.+
T Consensus 151 ~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~--------Gi~v~q~~s~~~~--~~~~~~~~~tl~~ 211 (285)
T d2o07a1 151 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKED--------GVLCCQGECQWLH--LDLIKEMRQFCQS 211 (285)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEE--------EEEEEEEECTTTC--HHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC--------CeEEEeccchhhh--HHHHHHHHHHHHh
Confidence 899999998641 348999999999986 5666665554332 2334444445544
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.89 E-value=4.4e-05 Score=76.90 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=89.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
......||-+|.|.|..+-.+++.. .+|+++||+|..++.+++-...+. + +.+++++.+|++++++. ...
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-----~~~ 178 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-----HKN 178 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-----CTT
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-----CCC
Confidence 3456789999999999999999863 599999999999999999765443 2 24799999999999964 256
Q ss_pred cccEEEeCCCc--------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhh
Q 007525 499 KITQVVMNLPN--------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVE 561 (600)
Q Consensus 499 ~fD~VVmNpP~--------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~ 561 (600)
+||+||+|++. .+.+|++.+.+.|+++ |++-...-+... ..+....+.+.+.+
T Consensus 179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~--------Gi~v~q~~s~~~--~~~~~~~i~~~l~~ 239 (312)
T d2b2ca1 179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKED--------GILSSQGESVWL--HLPLIAHLVAFNRK 239 (312)
T ss_dssp CEEEEEECCC-------------HHHHHHHHEEEE--------EEEEEECCCTTT--CHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC--------cEEEEecCChHH--hHHHHHHHHHHhhh
Confidence 89999999764 2468999999999886 455555333322 22344445445544
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=1e-05 Score=86.34 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=80.9
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC----C----------------CEEEEEeCcHHHHHHH
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI----V----------------KRVYANDLNPYAVDYL 464 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk----g----------------~~V~AvDiNP~Ave~l 464 (600)
-|+.|+...+- |++. ..++.+|+|.+||+|.|.+.+.+. . ..++|+|+++.++..+
T Consensus 145 qfyTP~~Iv~~--mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 145 QYFTPRPLIKT--IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp CCCCCHHHHHH--HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred hhccccchhHh--hhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 47778765543 3333 456889999999999999988763 1 1589999999999999
Q ss_pred HHHHHHcCCCCc----EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------------HHHHHHHHHHh
Q 007525 465 ERNSVLNKLEKK----IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------------TEFLDAFRGIY 522 (600)
Q Consensus 465 ~eNaklNgl~nr----V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------------~eFLdaa~~lL 522 (600)
+-|+-+.+.... -.+..++...--. . ...+||+||+|||+.. .-|+..+...|
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d~--~---~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 297 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSDG--E---NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 297 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHH--H---TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred HHHHHhhcccccccccchhhhhhhhhhcc--c---ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc
Confidence 999999887531 1234444332111 1 2467999999999842 24999999999
Q ss_pred cCC
Q 007525 523 RDR 525 (600)
Q Consensus 523 k~~ 525 (600)
+++
T Consensus 298 k~g 300 (524)
T d2ar0a1 298 HPG 300 (524)
T ss_dssp EEE
T ss_pred ccc
Confidence 976
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.77 E-value=5e-07 Score=88.35 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=71.3
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+|++. +.+++.||++|||.|.++..+++++.+|+|+|+++..++.++++... . .+++++++|+.++- + +
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--~-~n~~ii~~D~l~~~---~---~ 90 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--N-TRVTLIHQDILQFQ---F---P 90 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--C-SEEEECCSCCTTTT---C---C
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--c-cchhhhhhhhhccc---c---c
Confidence 46654 56899999999999999999999999999999999999988765432 2 35999999998762 1 2
Q ss_pred CCcccEEEeCCCcc-hHHHHHHHH
Q 007525 497 AHKITQVVMNLPND-ATEFLDAFR 519 (600)
Q Consensus 497 ~~~fD~VVmNpP~~-a~eFLdaa~ 519 (600)
...++.||-|+|+. +-..+..+.
T Consensus 91 ~~~~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 91 NKQRYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp CSSEEEEEEECCSSSCHHHHHHHH
T ss_pred cceeeeEeeeeehhhhHHHHHHHh
Confidence 34567899999995 334444443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=9e-05 Score=73.66 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=92.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..-++||=+|.|.|..+-.+++. + .+|+++||+|+.++.+++-...++ . +.+++++.+|+++++.+. ...+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~----~~~~ 154 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA----AEGS 154 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS----CTTC
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc----cccC
Confidence 45578999999999999999987 3 589999999999999999764432 2 347999999999998642 2358
Q ss_pred ccEEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhc
Q 007525 500 ITQVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEV 562 (600)
Q Consensus 500 fD~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~ 562 (600)
||+||+|++.. ..+|+..+.+.|+++ |++-+.+-+...+ .+....+.+.+.+.
T Consensus 155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~--------Gi~v~q~~s~~~~--~~~~~~i~~~l~~v 215 (290)
T d1xj5a_ 155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG--------GVVCTQAESLWLH--MDIIEDIVSNCREI 215 (290)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE--------EEEEEECCCTTTC--HHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC--------cEEEEecCCcHHH--HHHHHHHHhhhhhh
Confidence 99999998652 468999999999986 5676665444332 23334454555443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.54 E-value=4.7e-05 Score=71.51 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=46.4
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNak 469 (600)
+++++. -.+|++|||.|||+|+.+++|.+.|.+.+|+|++++.++.++++++
T Consensus 203 ~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 203 ERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 355554 4689999999999999999999999999999999999999999875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.51 E-value=2.9e-05 Score=74.95 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=48.2
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 473 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl 473 (600)
+|+++. -.+|++|||.|||+|+.+++|.+.|.+.+|+|+++++++.+++.+..+.+
T Consensus 241 ~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~~~ 297 (320)
T d1booa_ 241 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNI 297 (320)
T ss_dssp HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred HHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhccc
Confidence 355554 56899999999999999999999999999999999999999887665543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.41 E-value=6.2e-05 Score=71.57 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=47.9
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN 471 (600)
.++++. -.+|++|||.|||+|+.+++|.+.|.+.+++|++|+.++.++++++..
T Consensus 198 ~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 198 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 455554 568999999999999999999999999999999999999999988753
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.30 E-value=0.00013 Score=70.39 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=56.0
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
.|+|+|||+|+|++-+-+.|. -|+|+|+++.|.+..+.|. .+ .++++|..++-.. ....+|+++..|
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~~--~~~~~Di~~~~~~-----~~~~~dll~~g~ 69 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKISSD-----EFPKCDGIIGGP 69 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----CS--EEEESCTTTSCGG-----GSCCCSEEEECC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CC--CCccCChhhCCHh-----HcccccEEeecc
Confidence 599999999999998877786 5679999999999999884 22 5678998876321 134689999999
Q ss_pred Cc
Q 007525 508 PN 509 (600)
Q Consensus 508 P~ 509 (600)
|.
T Consensus 70 PC 71 (324)
T d1dcta_ 70 PC 71 (324)
T ss_dssp CC
T ss_pred cc
Confidence 97
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.00027 Score=67.01 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=78.1
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
++..+ ++..|+|+|||.|.=|+++|-. ..+|+.+|.+..-+..+++=++..+++| ++++++.+.++. ..
T Consensus 60 ~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~-------~~ 130 (207)
T d1jsxa_ 60 VAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-------SE 130 (207)
T ss_dssp HGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-------CC
T ss_pred hhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhc-------cc
Confidence 44444 4679999999999999999964 4699999999999999999999999986 999999998863 24
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.+||.|++---.....+++.+..+++++
T Consensus 131 ~~fD~V~sRA~~~~~~ll~~~~~~l~~~ 158 (207)
T d1jsxa_ 131 PPFDGVISRAFASLNDMVSWCHHLPGEQ 158 (207)
T ss_dssp SCEEEEECSCSSSHHHHHHHHTTSEEEE
T ss_pred cccceehhhhhcCHHHHHHHHHHhcCCC
Confidence 5799999865555556666666666654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00021 Score=69.68 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=69.7
Q ss_pred eEEEEeeechHHHHHHhhCCC---EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 429 VVCDVFAGVGPICIPAAKIVK---RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~---~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
.|+|+|||+|++++.+-+.|. -|+|+|+++.|++..+.|. .+ ..++++|..++....+. ...+|+++.
T Consensus 4 kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~-~~~~~~di~~~~~~~~~---~~~~Dll~g 74 (343)
T d1g55a_ 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PH-TQLLAKTIEGITLEEFD---RLSFDMILM 74 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TT-SCEECSCGGGCCHHHHH---HHCCSEEEE
T ss_pred EEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CC-CCcccCchhhCCHhHcC---CCCccEEEe
Confidence 699999999999987766563 3789999999999999884 22 46778888876433222 135899999
Q ss_pred CCCcchH--------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 506 NLPNDAT--------------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 506 NpP~~a~--------------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.||...- ...-.+.++++.-. ..|.+-+.+.++.-
T Consensus 75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~-----~kPk~~i~ENV~~l 123 (343)
T d1g55a_ 75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQ-----KLPKYILLENVKGF 123 (343)
T ss_dssp CCC------------------CHHHHHHHHGGGCS-----SCCSEEEEEEETTG
T ss_pred ecccccccccccccccccccccccchhhhhHhhhc-----CCCceeeeeccCCc
Confidence 9997321 12234455554310 02667888988854
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.07 E-value=0.00084 Score=64.63 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=71.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+....+|||+|||.|.+++.++++ +.+++..|+- +.+ +..+..++++++.+|.++-+ ...|
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~---------p~~D 141 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASV---------PQGD 141 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCC---------CCEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhh-------hccCCCCCeEEecCCccccc---------ccce
Confidence 455689999999999999999987 4699999984 433 33445567999999986532 2458
Q ss_pred EEEeC-----CCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 502 QVVMN-----LPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 ~VVmN-----pP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.++|- .|. .....|..+.++++++ +.|.+.++.-.
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pg--------g~llI~e~v~~ 182 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPN--------GKVIIVEFILP 182 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEEC
T ss_pred EEEEehhhhhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEEEec
Confidence 88873 332 3567899999999876 68888888643
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.98 E-value=0.00031 Score=68.58 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+-+|+|+|||+|++++.+-+.|. -|+|+|+++.|++..+.|.- + ..++|..++-.. ....+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~-----~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEK-----TIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGG-----GSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchh-----hcceeeeee
Confidence 567899999999999998888886 57889999999999999862 1 125787775321 134689999
Q ss_pred eCCCc
Q 007525 505 MNLPN 509 (600)
Q Consensus 505 mNpP~ 509 (600)
..||.
T Consensus 77 ggpPC 81 (327)
T d2c7pa1 77 AGFPC 81 (327)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 99996
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.011 Score=54.27 Aligned_cols=102 Identities=19% Similarity=0.156 Sum_probs=71.4
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHH--HHHHhhc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID--AMFASQK 496 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~--~l~~~~~ 496 (600)
+.++++..|+|+||+-|.|+-.++++ ..+|+|+|+.|. +.+.+ +.++++|..+... .......
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~-~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVG-VDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTT-EEEEESCTTSHHHHHHHHHHHT
T ss_pred CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCC-ceEeecccccchhhhhhhhhcc
Confidence 34789999999999999999988874 258999999872 35665 8999999865321 1111123
Q ss_pred CCcccEEEeCCC-cc-h-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 497 AHKITQVVMNLP-ND-A-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 497 ~~~fD~VVmNpP-~~-a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..++|+|+.|-- .. . ...+..+...|+++ |.+-+=.|..
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g--------G~fV~K~F~g 139 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG--------GSFVVKVFQG 139 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEEESS
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC--------CcEEEEEecC
Confidence 567999999853 21 1 23456677788775 5666666763
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00035 Score=67.31 Aligned_cols=49 Identities=12% Similarity=-0.045 Sum_probs=40.4
Q ss_pred CCCCCeEEEEeeechHHHHHHh-hCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAA-KIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaA-kkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
-.+|.+|||+|||+|.+++..+ +.+.+|+|+|+++.+++.++++++...
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~ 101 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCT
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCc
Confidence 3468899999999998886555 456799999999999999999876543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.0037 Score=62.28 Aligned_cols=111 Identities=11% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHH--HHHHhhcC----
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID--AMFASQKA---- 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~--~l~~~~~~---- 497 (600)
.++.|+|+|.|.|.++..+...+ .+|+|+|+++..++.|++... + ++++++++|+..+-. .+...+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~--~~~~ii~~D~l~~~~~~~l~~~~~~~~~~ 118 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--G--SPLQILKRDPYDWSTYSNLIDEERIFVPE 118 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--T--SSCEEECSCTTCHHHHHHHTTTTCSSCCC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--C--CCcEEEeCchhhcchhhhhhhcccccccc
Confidence 57889999999999999998753 599999999999999987642 2 358999999976632 22211000
Q ss_pred -----C--cccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 498 -----H--KITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 498 -----~--~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
. .-=+||-|+|+.. ..++-.++..+.... +-...|.+.++.+.
T Consensus 119 ~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~~~~~~--~l~~~g~~~~vlm~ 169 (322)
T d1i4wa_ 119 VQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKN--WLYRFGKVKMLLWM 169 (322)
T ss_dssp CCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTC--GGGGGSEEEEEEEE
T ss_pred cccccccCCceEEEEeCCchhhHHHHHHHHHhccccc--cccccccceEEEEE
Confidence 0 0115889999963 345544444332221 11123566666554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.38 E-value=0.0038 Score=60.15 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=77.5
Q ss_pred CCCeEEEEeeechHHHHHHhh-C-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAK-I-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk-k-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+..|+|+|+|-|.=||++|- . ..+|+.+|.+..-+..++.=++.-+++| +.++++.+.++.... ...+.||.|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~---~~~~~~D~v 145 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRK---DVRESYDIV 145 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCT---TTTTCEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccc---cccccceEE
Confidence 567899999999999999986 3 4699999999999999999999999997 999999998764210 123579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+.=--+....++.-...+++++
T Consensus 146 ~sRAva~l~~ll~~~~~~l~~~ 167 (239)
T d1xdza_ 146 TARAVARLSVLSELCLPLVKKN 167 (239)
T ss_dssp EEECCSCHHHHHHHHGGGEEEE
T ss_pred EEhhhhCHHHHHHHHhhhcccC
Confidence 9755455566777778777765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.03 E-value=0.016 Score=55.36 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
....+|+|+|+|.|.+++.++++ ..+++..|+ |..++ ..+..++|+++.+|.++- ...+|.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~---------~p~aD~ 141 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTS---------IPNADA 141 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTC---------CCCCSE
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccC---------CCCCcE
Confidence 45578999999999999999987 469999999 44443 334566899999998653 235798
Q ss_pred EEe-----CCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 503 VVM-----NLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVm-----NpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+++ |.+. .+.+.|..+.++++++.. .+.+.+.++.-.
T Consensus 142 ~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~-----~~~lli~e~~~~ 184 (244)
T d1fp2a2 142 VLLKYILHNWTDKDCLRILKKCKEAVTNDGK-----RGKVTIIDMVID 184 (244)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGC-----CCEEEEEECEEC
T ss_pred EEEEeecccCChHHHHHHHHHHHHHcCcccC-----CcEEEEEEeecC
Confidence 887 4433 346789999999988622 257777777543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.024 Score=50.29 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||-.+| |+|..++.+|+. |++|++++.+++..+.+++ .|.+ .+++-.-.++...+.+...+..+
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---cccccccccHHHHhhhhhccCCc
Confidence 789999999986 789999999985 8899999999988877754 5654 34443222333332221134568
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|+|+-.. ....++.+..+++++ +++..|.+
T Consensus 99 d~v~d~~---g~~~~~~~~~~l~~~--------G~iv~~G~ 128 (174)
T d1yb5a2 99 DIIIEML---ANVNLSKDLSLLSHG--------GRVIVVGS 128 (174)
T ss_dssp EEEEESC---HHHHHHHHHHHEEEE--------EEEEECCC
T ss_pred eEEeecc---cHHHHHHHHhccCCC--------CEEEEEec
Confidence 8776543 245788889999875 46666654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.014 Score=52.24 Aligned_cols=107 Identities=12% Similarity=0.004 Sum_probs=67.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+-.||| +|.+++.+|+. |+ +|+++|.|++-.+.+++ .|.+.-+..-..|..+....+.+......+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~ 101 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITHGRGA 101 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhCCCCc
Confidence 6789999999887 57778888874 76 89999999999998865 344321111123444443333221123458
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|+|+--- .. ...++.+..+++++ +++.++.+...
T Consensus 102 Dvvid~v-G~-~~~~~~a~~~l~~~--------G~iv~~G~~~~ 135 (182)
T d1vj0a2 102 DFILEAT-GD-SRALLEGSELLRRG--------GFYSVAGVAVP 135 (182)
T ss_dssp EEEEECS-SC-TTHHHHHHHHEEEE--------EEEEECCCCSC
T ss_pred eEEeecC-Cc-hhHHHHHHHHhcCC--------CEEEEEeecCC
Confidence 8766332 21 23467788888875 57777765543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=95.64 E-value=0.0079 Score=61.73 Aligned_cols=147 Identities=14% Similarity=0.243 Sum_probs=88.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCC---cEEEEEcChHH------HHH-
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEK---KIEVFNMDGRR------FID- 489 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~n---rV~~i~gDare------~l~- 489 (600)
+.++++++|+||-+|.+++.+++. +.+|+|+|-+|..++.+++|++.|++.+ ++.+++.-..+ +..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~ 289 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHE 289 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC---
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEEEeeccceEEEEecC
Confidence 568899999999999999877652 3599999999999999999999987643 34443321100 000
Q ss_pred ----HHH------------------HhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC
Q 007525 490 ----AMF------------------ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP 547 (600)
Q Consensus 490 ----~l~------------------~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~ 547 (600)
... .+-....+|.+=||--..-.+.|.-+.+.++.. -|.|.+=.+....
T Consensus 290 ~~~~s~~~~~~~~~~~~~~V~~~tLD~l~~~~id~IKIDVEG~E~~VLkGa~~~Lk~~-------kPiI~IEiyh~~~-- 360 (395)
T d2py6a1 290 GGHGGFVKPADADHEPADLIDVRPIDDIIDDAPTFIKMDIEGSELSALKGARRAISEH-------KPKLAISAYHRST-- 360 (395)
T ss_dssp -----------------CEEEEECHHHHCSSCCSEEEECCSSCHHHHHHTTHHHHHHH-------CCEEEEECCSSTT--
T ss_pred CCccccccccccCCCceEEEEEEEHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHHhC-------CCEEEEEEeccHh--
Confidence 000 000123467777777666567777777777653 1455433332221
Q ss_pred chhHHHHHHHHHhhcccceEEEEeEEecCCCcEEEE
Q 007525 548 EFDFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCA 583 (600)
Q Consensus 548 ~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~mycv 583 (600)
++. .+...+.....+..+. +|.+.|+-|=.++
T Consensus 361 --d~~-~i~~~L~~l~~~Y~~~-lR~h~~~~~d~vl 392 (395)
T d2py6a1 361 --DLL-DLTNYILSIRPDYQIG-LRHHTPDRWDTCL 392 (395)
T ss_dssp --HHH-HHHHHHHHHCTTCCEE-EEECSSSSCCEEE
T ss_pred --hHH-HHHHHHHHhccCCeEE-EecCCCCccceEE
Confidence 222 2333444444455554 6788887664443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.54 E-value=0.011 Score=56.06 Aligned_cols=84 Identities=18% Similarity=0.065 Sum_probs=60.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
....+|+|+|||.|.+++.++++ +.+++..|+-+. ++.....+++++..+|.++-+ ...|.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~~~~~~r~~~~~~d~~~~~---------P~ad~ 142 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV--------IEDAPSYPGVEHVGGDMFVSI---------PKADA 142 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT--------TTTCCCCTTEEEEECCTTTCC---------CCCSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh--------hhhcccCCceEEecccccccC---------CCcce
Confidence 34578999999999999999997 469999999653 223344567999999986532 12344
Q ss_pred EEe-----CCCc-chHHHHHHHHHHhcCC
Q 007525 503 VVM-----NLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVm-----NpP~-~a~eFLdaa~~lLk~~ 525 (600)
+++ |.+. .....|..+.++++++
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pg 171 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCYEALPDN 171 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHHHHCCSS
T ss_pred EEEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence 443 4433 3567899999999876
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.34 E-value=0.093 Score=45.85 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE---cChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN---MDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~---gDare~l~~l~~~~~~~ 498 (600)
+++|++|+-.||| +|.+++.+|+. |++|+++|.+++-++.+++ .+... +.... .|..+....+.. ..+.
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~----~ga~~-~~~~~~~~~~~~~~~~~~~~-~~g~ 97 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGADV-TLVVDPAKEEESSIIERIRS-AIGD 97 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCSE-EEECCTTTSCHHHHHHHHHH-HSSS
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH----cCCcE-EEeccccccccchhhhhhhc-cccc
Confidence 7899999999887 77777777774 7899999999999988876 23321 11111 122333333221 1245
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+|.|+-.- . ....++.+.++++++ ++|-++.....
T Consensus 98 g~D~vid~~-g-~~~~~~~a~~~~~~~--------G~iv~~G~~~~ 133 (170)
T d1e3ja2 98 LPNVTIDCS-G-NEKCITIGINITRTG--------GTLMLVGMGSQ 133 (170)
T ss_dssp CCSEEEECS-C-CHHHHHHHHHHSCTT--------CEEEECSCCSS
T ss_pred CCceeeecC-C-ChHHHHHHHHHHhcC--------CceEEEecCCC
Confidence 689665433 2 345678888999876 57777765543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.05 E-value=0.12 Score=46.10 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=68.3
Q ss_pred cCCCCCeEEEEeeec-hHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFAGV-GPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfAGv-G~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+++|++|+=+|||. |.+++.+|+. |+ +|+++|.+++-.+.+++ .|.. .+++-.-.++...+.+...+..
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---ccccccchhHHHHHHHHhhccC
Confidence 378999999888874 7888888885 65 89999999998888764 4443 3343332223222222112345
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+|+||-.-.. ...++.+..+++++ +++.++.+...
T Consensus 97 ~D~vid~~g~--~~~~~~a~~~~~~~--------G~iv~~G~~~~ 131 (174)
T d1jqba2 97 VDRVIMAGGG--SETLSQAVKMVKPG--------GIISNINYHGS 131 (174)
T ss_dssp EEEEEECSSC--TTHHHHHHHHEEEE--------EEEEECCCCCS
T ss_pred cceEEEccCC--HHHHHHHHHHHhcC--------CEEEEEeecCC
Confidence 8977655433 24567888888875 57777776543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.3 Score=42.74 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=66.2
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE-cChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~-gDare~l~~l~~~~~~~~ 499 (600)
+++|++|+=+||| +|.+++.+|+. |+ +|+++|.+++-++.+++ .|.+. +.... .|..+....+. ...+..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~-~~~~~~~~~~~~~~~~~-~~~g~g 97 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL-VLQISKESPQEIARKVE-GQLGCK 97 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE-EEECSSCCHHHHHHHHH-HHHTSC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcc-ccccccccccccccccc-ccCCCC
Confidence 7889999999885 45556666653 76 89999999998887764 35542 22221 23333332221 123457
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+|.|+---. ....++.+..+++++ +++.++.+...
T Consensus 98 ~Dvvid~~G--~~~~~~~a~~~~~~g--------G~iv~~G~~~~ 132 (171)
T d1pl8a2 98 PEVTIECTG--AEASIQAGIYATRSG--------GTLVLVGLGSE 132 (171)
T ss_dssp CSEEEECSC--CHHHHHHHHHHSCTT--------CEEEECSCCCS
T ss_pred ceEEEeccC--CchhHHHHHHHhcCC--------CEEEEEecCCC
Confidence 897665432 245678888999876 57777776544
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=93.16 E-value=0.061 Score=52.46 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=74.8
Q ss_pred EEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 431 CDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+..|.|+-.++..+++..-+.+.+|+.|.-.+.|++|+.. ..++.+.+.|+++.+..++. +.++--.|++|||+-
T Consensus 87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~allP--P~~rRgLVLIDPpYE 161 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLP--PPEKRGLIFIDPSYE 161 (271)
T ss_dssp CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCS--CTTSCEEEEECCCCC
T ss_pred cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhhCC--CCCCceEEEecCCcC
Confidence 4789999999999999989999999999999999987543 23699999999999987663 234456899999985
Q ss_pred hH----HHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 511 AT----EFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 511 a~----eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.. ...+.+..+++.-.. | .++-||=..
T Consensus 162 ~k~ey~~v~~~l~~a~kr~~~-g----~~~iWYPi~ 192 (271)
T d2oo3a1 162 RKEEYKEIPYAIKNAYSKFST-G----LYCVWYPVV 192 (271)
T ss_dssp STTHHHHHHHHHHHHHHHCTT-S----EEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHHhCCC-c----eEEEEeecc
Confidence 43 234455555554321 1 355666543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.03 Score=49.50 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~~~~~~~ 499 (600)
.+++|++|+-+||| +|.+++.+|+. |++|+++|.|++-++.+++ .|.+ .+++- +-.++... ....
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~-----~~~~ 91 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEK-----YFDT 91 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHH-----SCSC
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCCc---EEeeccchHHHHHh-----hhcc
Confidence 37899999999998 88888888875 8999999999998888765 4544 23332 22233322 2457
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|+|+.--......-+..+.++++++ ++|.++....
T Consensus 92 ~d~vi~~~~~~~~~~~~~~~~~l~~~--------G~iv~~G~~~ 127 (168)
T d1piwa2 92 FDLIVVCASSLTDIDFNIMPKAMKVG--------GRIVSISIPE 127 (168)
T ss_dssp EEEEEECCSCSTTCCTTTGGGGEEEE--------EEEEECCCCC
T ss_pred cceEEEEecCCccchHHHHHHHhhcc--------ceEEEecccc
Confidence 89877532221111234566677764 5777776544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.87 E-value=0.11 Score=45.27 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++|+=.||| +|..++.+|+. |++|+++|.+++-++.+++ .|.+ .+++.+..++...+.+. ...+|
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~--~~g~~ 95 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRD--IGGAH 95 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH--HSSEE
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHh--hcCCc
Confidence 7889999888775 56666677764 7899999999999987764 4543 34554444443332221 12355
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.++.+-.. ...++.+.++++++ +++.++.+...
T Consensus 96 ~~i~~~~~--~~~~~~~~~~l~~~--------G~iv~~G~~~~ 128 (166)
T d1llua2 96 GVLVTAVS--NSAFGQAIGMARRG--------GTIALVGLPPG 128 (166)
T ss_dssp EEEECCSC--HHHHHHHHTTEEEE--------EEEEECCCCSS
T ss_pred cccccccc--chHHHHHHHHhcCC--------cEEEEEEecCC
Confidence 55555433 35677888888875 57777765443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.76 E-value=0.1 Score=47.54 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=68.8
Q ss_pred cCCCCCeEEEEeeec-hHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE---cChHHHHHHHHHhhc
Q 007525 423 GFNFKDVVCDVFAGV-GPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFN---MDGRRFIDAMFASQK 496 (600)
Q Consensus 423 ~l~~ge~VLDlfAGv-G~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~---gDare~l~~l~~~~~ 496 (600)
.+++|++|+.+|||. |..++.+|+. |+ +|+++|.+++-++.+++. |.+ .+++ .|..+.+.++. .
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t---~ 91 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALL---G 91 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHH---S
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHh---C
Confidence 388999999999876 6666777763 54 999999999999887653 443 2332 34444444433 2
Q ss_pred CCcccEEEeCC--Cc-----------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 497 AHKITQVVMNL--PN-----------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 497 ~~~fD~VVmNp--P~-----------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+..+|+++-.- |. ...+.++.+.++++++ |+|.+.....
T Consensus 92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g--------G~v~~~G~~~ 143 (195)
T d1kola2 92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA--------GKIGIPGLYV 143 (195)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE--------EEEEECSCCC
T ss_pred CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC--------CEEEEeeecC
Confidence 45688877432 11 1346889999999876 5777776543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.53 E-value=0.14 Score=44.30 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=63.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++||=.+|| +|..++.+|+. |++|+++|.+++-.+.+++ .|.+.-+.....|..+.+.... ..+|
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~-----~~~~ 95 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV-----GGVH 95 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH-----SSEE
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc-----CCCc
Confidence 7899999888775 45556666664 7899999999999887765 5654211111123333333322 2356
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.+|.+.+. ...+..+..+++++ +++.++...
T Consensus 96 ~~v~~~~~--~~~~~~a~~~l~~~--------G~i~~~g~~ 126 (168)
T d1rjwa2 96 AAVVTAVS--KPAFQSAYNSIRRG--------GACVLVGLP 126 (168)
T ss_dssp EEEESSCC--HHHHHHHHHHEEEE--------EEEEECCCC
T ss_pred eEEeecCC--HHHHHHHHHHhccC--------CceEecccc
Confidence 66667643 56788999999875 456555543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.32 Score=45.78 Aligned_cols=80 Identities=9% Similarity=-0.021 Sum_probs=59.2
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHhhc
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQK 496 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~~~ 496 (600)
+|.+||=.||+.| .++..+++.|++|+..+.|++.++.+.+.++..+..+++.++.+|+.+. +..+.+ .
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~--~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS--Q 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH--h
Confidence 4778888887655 3444555679999999999999999999988888776799999998542 222222 1
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+.+|++|-|-
T Consensus 87 ~g~iD~lVnnA 97 (257)
T d1xg5a_ 87 HSGVDICINNA 97 (257)
T ss_dssp HCCCSEEEECC
T ss_pred cCCCCEEEecc
Confidence 35689888764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.23 Score=43.51 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=59.8
Q ss_pred CCCCCeEEEEe-ee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF-AG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf-AG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+=.+ +| +|.+++.+|+. |++|++++.+++-.+.+++ .|.+ ++++-+-.++..++.+...+..+
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~---~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCe---EEEECCCCCHHHHHHHHhCCCCe
Confidence 78899988774 44 89999999986 8999999999999998874 3543 34543333333332221124567
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+ ++|.... +.+..+..+++++
T Consensus 99 d~-v~d~~g~--~~~~~~~~~l~~~ 120 (179)
T d1qora2 99 RV-VYDSVGR--DTWERSLDCLQRR 120 (179)
T ss_dssp EE-EEECSCG--GGHHHHHHTEEEE
T ss_pred EE-EEeCccH--HHHHHHHHHHhcC
Confidence 75 5554432 3456677777764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.46 E-value=0.21 Score=43.85 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||=.+ .|+|.+++.+|+. |++|+++.-+++..+++++ .|.+ .++...-.++..++.+...+..+
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHHHHHHHhCCCCE
Confidence 78899998755 5788999999985 8999999999988887764 4654 23443333333333221124569
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-... .+.+..+.++++++
T Consensus 96 d~v~d~~g---~~~~~~~~~~l~~~ 117 (183)
T d1pqwa_ 96 DVVLNSLA---GEAIQRGVQILAPG 117 (183)
T ss_dssp EEEEECCC---THHHHHHHHTEEEE
T ss_pred EEEEeccc---chHHHHHHHHhcCC
Confidence 97775443 24567788888865
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=91.49 E-value=0.12 Score=49.84 Aligned_cols=113 Identities=8% Similarity=0.026 Sum_probs=65.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++..|+|+|||-|+++-.||.+. ..|.|.++--+--+ .-.....++. |-+++...+....+ +...+|
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~-ni~~~~~~~dv~~l-------~~~~~D 134 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGW-NLVRLQSGVDVFFI-------PPERCD 134 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTG-GGEEEECSCCTTTS-------CCCCCS
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCcccccccc-ccccchhhhhHHhc-------CCCcCC
Confidence 7788899999999999999999763 57888887311000 0000001111 22444444432221 357899
Q ss_pred EEEeCCCc-c---------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHH
Q 007525 502 QVVMNLPN-D---------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIR 556 (600)
Q Consensus 502 ~VVmNpP~-~---------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~ 556 (600)
.|++|.-. + ....|+.+...|+++ |..-|=-|++.. .++.++++
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~g--------g~FvvKVl~py~---~~v~e~le 188 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN--------TQFCVKVLNPYM---SSVIEKME 188 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT--------CEEEEEESCCCS---HHHHHHHH
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccC--------CEEEEEECCCCC---hHHHHHHH
Confidence 99999632 1 235677777888775 344444455432 24555444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.68 E-value=0.39 Score=41.69 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=69.8
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+++|++|+=.+| |+|..++.+++. | +.|+++|.+++-.+.+++ .|.+ .+++.+..++.....+...+..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHhhccc
Confidence 789999999996 477777777764 6 599999999999888876 3543 3455554444444332222456
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+|.|+-.- . ....++.+..+++++ ++|.++.+...
T Consensus 98 ~d~vid~~-g-~~~~~~~a~~~l~~~--------G~iv~~G~~~~ 132 (170)
T d1jvba2 98 VDAVIDLN-N-SEKTLSVYPKALAKQ--------GKYVMVGLFGA 132 (170)
T ss_dssp EEEEEESC-C-CHHHHTTGGGGEEEE--------EEEEECCSSCC
T ss_pred chhhhccc-c-cchHHHhhhhhcccC--------CEEEEeccccC
Confidence 88665433 2 345667788888875 67877776543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.31 E-value=0.42 Score=42.04 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=63.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+=+||| +|..++.+|+. |+ .|++.|.+++-++.+++ .|.. ++++-+..++..++.+- .++.+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~-t~gg~ 97 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEI-TDGGV 97 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH-TTSCE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe---EEEeCCCcCHHHHHHHH-cCCCC
Confidence 7899999988775 34455666654 65 78899999998888775 3543 34554433333322211 13478
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|+|+-.-. ....++.+..+++++ +++-++...
T Consensus 98 D~vid~~G--~~~~~~~~~~~~~~~--------G~i~~~G~~ 129 (174)
T d1f8fa2 98 NFALESTG--SPEILKQGVDALGIL--------GKIAVVGAP 129 (174)
T ss_dssp EEEEECSC--CHHHHHHHHHTEEEE--------EEEEECCCC
T ss_pred cEEEEcCC--cHHHHHHHHhcccCc--------eEEEEEeec
Confidence 97665432 245667888888875 566665543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=1.1 Score=41.70 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.|.+++=-||+.| .++..+|+.|++|+.+|.|++.++.+.++++..+- ++.++.+|..+. +..+.+. ...+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4788888888776 56777788899999999999999999999887653 488999998654 2222211 1245
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
..|.+|.|-
T Consensus 84 ~idilinna 92 (244)
T d1yb1a_ 84 DVSILVNNA 92 (244)
T ss_dssp CCSEEEECC
T ss_pred CCceeEeec
Confidence 689888764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.55 E-value=0.91 Score=42.58 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=57.2
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+|.+++=-|++.| .++..+|+.|++|+.+|.|++.++.+...+...+-..++..+.+|+.+. +..+++. ...+
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 4667777777555 4667777889999999999999998888877766555688999997542 2222211 1135
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
..|.+|-|
T Consensus 83 ~iDiLVnn 90 (258)
T d1iy8a_ 83 RIDGFFNN 90 (258)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 78988864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.44 E-value=0.46 Score=41.97 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||=.++ |+|..++.+|+. |++|+++.-+++..+++++. +.+ .++.-+-.++.....+......+
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhcccccccHHHHHHHHhhcCCC
Confidence 789999987666 388899999985 78999999999988887763 544 23333322222221111124558
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
|+ ++|.-. .+.++....+++++ +.+-+|..
T Consensus 100 d~-v~D~vG--~~~~~~~~~~l~~~--------G~~v~~G~ 129 (182)
T d1v3va2 100 DC-YFDNVG--GEFLNTVLSQMKDF--------GKIAICGA 129 (182)
T ss_dssp EE-EEESSC--HHHHHHHGGGEEEE--------EEEEECCC
T ss_pred ce-eEEecC--chhhhhhhhhccCC--------CeEEeecc
Confidence 85 555443 46778888888875 45666654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.82 E-value=1.6 Score=40.55 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=54.2
Q ss_pred CCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCc
Q 007525 427 KDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 499 (600)
Q Consensus 427 ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~ 499 (600)
|+++|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.++..+. ++.++.+|+.+. +..+++. ...++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 556666665433 35556667899999999999999999998887665 488999997543 2222211 12467
Q ss_pred ccEEEeC
Q 007525 500 ITQVVMN 506 (600)
Q Consensus 500 fD~VVmN 506 (600)
.|.+|-|
T Consensus 80 iDilVnn 86 (257)
T d2rhca1 80 VDVLVNN 86 (257)
T ss_dssp CSEEEEC
T ss_pred CCEEEec
Confidence 8988865
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.58 E-value=0.24 Score=45.21 Aligned_cols=44 Identities=14% Similarity=0.327 Sum_probs=34.4
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------------HHHHHHHHHHhcCC
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------------~eFLdaa~~lLk~~ 525 (600)
++++||+.+++..+ +.+++|.|+.|||+.. .+++.++.++|+++
T Consensus 6 ~i~~gDcle~l~~l----pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~ 67 (256)
T d1g60a_ 6 KIHQMNCFDFLDQV----ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKD 67 (256)
T ss_dssp SEEECCHHHHHHHS----CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEE
T ss_pred EEEeccHHHHHhhC----cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccC
Confidence 47999999999865 3578999999999731 23566788888875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=88.45 E-value=1.1 Score=42.03 Aligned_cols=79 Identities=16% Similarity=0.037 Sum_probs=55.6
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.++..+. ++.++.+|+.+. +..+++. ...+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4778887776554 35566677899999999999999999988877664 488999997542 2222211 1135
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
..|.+|-|
T Consensus 82 ~iDilVnn 89 (260)
T d1zema1 82 KIDFLFNN 89 (260)
T ss_dssp CCCEEEEC
T ss_pred CCCeehhh
Confidence 78988865
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.29 E-value=1.4 Score=41.04 Aligned_cols=81 Identities=17% Similarity=0.063 Sum_probs=56.1
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
++.++|=.|++.| .++..+|+.|++|+.+|.|++.++.+.+.++..+. ++.++.+|+.+. +..+++. ...+
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5677777776544 33445556789999999999999999988876654 488999998643 2222211 1246
Q ss_pred cccEEEeCCC
Q 007525 499 KITQVVMNLP 508 (600)
Q Consensus 499 ~fD~VVmNpP 508 (600)
.+|.+|.|-.
T Consensus 87 ~iDilvnnag 96 (251)
T d2c07a1 87 NVDILVNNAG 96 (251)
T ss_dssp CCCEEEECCC
T ss_pred Cceeeeeccc
Confidence 7998887643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.47 E-value=1.2 Score=42.00 Aligned_cols=81 Identities=19% Similarity=0.081 Sum_probs=57.8
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC-CcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~-nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
+|.+++=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.++.++.. .++.++.+|+.+. +..+++. ...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 4677777777655 355566677999999999999999999999888764 3689999997543 2222211 113
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+.+|.+|.|
T Consensus 83 G~iDilVnn 91 (274)
T d1xhla_ 83 GKIDILVNN 91 (274)
T ss_dssp SCCCEEEEC
T ss_pred CCceEEEee
Confidence 578988876
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.28 E-value=1.2 Score=41.68 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=56.3
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC-CcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~-nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
+|+++|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.+...+.. .++.++.+|+.+. +.++.+. ...
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4666776666544 345566677999999999999999999999888764 3589999998532 2222211 113
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+..|.+|-|
T Consensus 84 g~iDilvnn 92 (264)
T d1spxa_ 84 GKLDILVNN 92 (264)
T ss_dssp SCCCEEEEC
T ss_pred CCCCEeecc
Confidence 578988866
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.87 E-value=2.4 Score=39.54 Aligned_cols=80 Identities=19% Similarity=0.010 Sum_probs=57.0
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHH---hhcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFA---SQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~---~~~~ 497 (600)
+|++||=.||..| .++..+++.|++|+.++.|++.++.+.+.++.++. .+.++.+|+.+. +.++++ +...
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5788888887655 45666677899999999999999998888887775 378889997543 222221 1123
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+..|+++.|.
T Consensus 83 g~idilinna 92 (258)
T d1ae1a_ 83 GKLNILVNNA 92 (258)
T ss_dssp SCCCEEEECC
T ss_pred CCcEEEeccc
Confidence 5688887653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.87 E-value=1.2 Score=41.80 Aligned_cols=81 Identities=16% Similarity=0.056 Sum_probs=57.3
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC-CcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~-nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
+|.++|=.|++.| .++..+|+.|++|+.+|.|++.++.+.+.++..+.. .++.++.+|+.+. +..+++. ...
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4667777776655 455666678999999999999999999998887764 3589999997542 2222211 113
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+.+|.+|-|
T Consensus 84 g~iDilvnn 92 (272)
T d1xkqa_ 84 GKIDVLVNN 92 (272)
T ss_dssp SCCCEEEEC
T ss_pred CCceEEEeC
Confidence 568988865
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=86.30 E-value=2.3 Score=39.64 Aligned_cols=79 Identities=15% Similarity=0.003 Sum_probs=56.2
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHH---hhcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFA---SQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~---~~~~ 497 (600)
+|.++|=-|++.| .++..+++.|++|+.+|.|++.++.+.+.+...+. ++.++.+|+.+. +..+++ +...
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 5788887787654 45566667799999999999999999888877664 478899998542 222221 1123
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
.+.|++|-|
T Consensus 85 ~~idilvnn 93 (259)
T d2ae2a_ 85 GKLNILVNN 93 (259)
T ss_dssp TCCCEEEEC
T ss_pred CCceEEEEC
Confidence 478998876
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.90 E-value=0.27 Score=46.13 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=39.3
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch------------------HHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA------------------TEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a------------------~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
=++++||+.+++..+ +.+++|.|+.|||+.. .+.+..+.++|+++ +.+.+
T Consensus 13 ~~l~~GD~le~l~~l----~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~--------G~i~i 80 (320)
T d1booa_ 13 GSMYIGDSLELLESF----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPD--------GSFVV 80 (320)
T ss_dssp EEEEESCHHHHGGGS----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEE--------EEEEE
T ss_pred CEEEehhHHHHHhhC----ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCccc--------Ccccc
Confidence 489999999998764 3678999999999842 24567777788775 45555
Q ss_pred Eec
Q 007525 539 YGF 541 (600)
Q Consensus 539 Y~F 541 (600)
++-
T Consensus 81 ~~~ 83 (320)
T d1booa_ 81 DFG 83 (320)
T ss_dssp EEC
T ss_pred ccc
Confidence 553
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.66 E-value=0.33 Score=44.80 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=35.3
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~ 525 (600)
-.++++|+.+.++.+ +++++|.|+.|||+.. ..++.++.++|+++
T Consensus 5 ~~~~~~D~le~l~~l----~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~ 64 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAKL----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPT 64 (279)
T ss_dssp EEEEECCHHHHHHTS----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEE
T ss_pred ceEEechHHHHHhhC----cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCC
Confidence 457889999999764 3678999999999842 34567788888875
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=1.4 Score=40.88 Aligned_cols=82 Identities=15% Similarity=-0.053 Sum_probs=54.0
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.|.++|=-|++.| .++..+|+.|++|+.+|.|++.++.+...+....-..++.++.+|+.+. +..+++. ...+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4677777776544 3455556679999999999999888877665432233588999997553 2222211 1135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|-|-
T Consensus 82 ~iDilVnnA 90 (254)
T d2gdza1 82 RLDILVNNA 90 (254)
T ss_dssp CCCEEEECC
T ss_pred CcCeecccc
Confidence 789888764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.27 E-value=0.15 Score=46.09 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC--hHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD--GRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD--are~l~~l~~~~~~~ 498 (600)
..+|++||=-+ .|+|.+++.+|+. |++|++.--+++-.+.+++ .|.+. +++-+ ..+.... -.++
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa~~---vi~~~~~~~~~~~~----~~~~ 97 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAKE---VLAREDVMAERIRP----LDKQ 97 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCSE---EEECC-------------CCSC
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----cccce---eeecchhHHHHHHH----hhcc
Confidence 56788888887 4899999999985 8899999999998888764 35442 22222 1121111 1245
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP 547 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~ 547 (600)
.+|+|+ |... -..++..+++++++ +++.+|.+....+.
T Consensus 98 gvD~vi-d~vg--g~~~~~~l~~l~~~--------Griv~~G~~~g~~~ 135 (176)
T d1xa0a2 98 RWAAAV-DPVG--GRTLATVLSRMRYG--------GAVAVSGLTGGAEV 135 (176)
T ss_dssp CEEEEE-ECST--TTTHHHHHHTEEEE--------EEEEECSCCSSSCC
T ss_pred CcCEEE-EcCC--chhHHHHHHHhCCC--------ceEEEeecccCccc
Confidence 799654 4433 24678889999876 67888887755443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=1.8 Score=40.30 Aligned_cols=79 Identities=20% Similarity=0.055 Sum_probs=54.9
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.++..+. ++.++.+|+.+. +..+++. ...+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5778887766544 34455666799999999999999999988887654 488899998643 2222211 1135
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
..|.+|.|
T Consensus 88 ~iDilvnn 95 (255)
T d1fmca_ 88 KVDILVNN 95 (255)
T ss_dssp SCCEEEEC
T ss_pred CCCEeeeC
Confidence 68988876
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.03 E-value=2.8 Score=38.79 Aligned_cols=75 Identities=16% Similarity=0.014 Sum_probs=50.8
Q ss_pred EEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCcccE
Q 007525 430 VCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKITQ 502 (600)
Q Consensus 430 VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~fD~ 502 (600)
+|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.++..+. ++.++.+|+.+. +..+.+. ...++.|.
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 344454433 34455666799999999999999999988887664 488999998653 2222211 12467998
Q ss_pred EEeC
Q 007525 503 VVMN 506 (600)
Q Consensus 503 VVmN 506 (600)
+|-|
T Consensus 82 lVnn 85 (255)
T d1gega_ 82 IVNN 85 (255)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8865
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.70 E-value=2 Score=37.13 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+++|++|+-.||| +|.+++.+|+. | ..|+++|.+++-.+.+++ .+.+ ++++.+... .....+......
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~-~~~~~~~~~~~g 100 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRDP-VKQVMELTRGRG 100 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCH-HHHHHHHTTTCC
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---eeecCcccH-HHHHHHhhCCCC
Confidence 47889999998886 55566676663 5 589999999998887774 3433 344443211 111111112345
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|.|+-.-.. ...++.+..+++++ ++|.++.+..
T Consensus 101 ~d~vid~~g~--~~~~~~a~~~l~~~--------G~iv~~G~~~ 134 (172)
T d1h2ba2 101 VNVAMDFVGS--QATVDYTPYLLGRM--------GRLIIVGYGG 134 (172)
T ss_dssp EEEEEESSCC--HHHHHHGGGGEEEE--------EEEEECCCSS
T ss_pred ceEEEEecCc--chHHHHHHHHHhCC--------CEEEEEeCcc
Confidence 8866654432 34578888888875 5777777643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.23 E-value=1.7 Score=40.55 Aligned_cols=78 Identities=13% Similarity=0.010 Sum_probs=52.0
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+|.++|=.|++.| .++..+|+.|++|+.+|.|++.++.+.+.+.. .+.+.++.+|+.+. +..+++. ...+
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4778888887655 33445566799999999999998877776543 23488889998543 2222211 1135
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|.+|.|
T Consensus 82 ~iD~lVnn 89 (268)
T d2bgka1 82 KLDIMFGN 89 (268)
T ss_dssp CCCEEEEC
T ss_pred Ccceeccc
Confidence 78988864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.16 E-value=0.45 Score=42.23 Aligned_cols=44 Identities=20% Similarity=0.069 Sum_probs=35.8
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERN 467 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eN 467 (600)
+++|++|+=.||| +|.+++.+++. | ++|+++|.|++-++.+++-
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 7899999999885 56667777764 6 5999999999999987764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.62 E-value=2.7 Score=39.02 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH-cCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVL-NKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl-Ngl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.|++..+.+.+.+.. .+. ++.++.+|+.+. +..+++. ...
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4778888887655 45666777899999999999998877776543 343 488899997542 2222211 113
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+.+|.+|.|
T Consensus 82 g~iDiLVnn 90 (251)
T d1vl8a_ 82 GKLDTVVNA 90 (251)
T ss_dssp SCCCEEEEC
T ss_pred CCCCEEEEC
Confidence 578988865
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.44 E-value=3 Score=38.86 Aligned_cols=80 Identities=14% Similarity=0.009 Sum_probs=57.1
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHH---hhcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFA---SQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~---~~~~ 497 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.+...+. ++..+.+|+.+. +..+.+ +...
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 5778888887655 35566667899999999999999999888877665 488999997532 222221 1123
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|++|.|-
T Consensus 85 g~idilvnnA 94 (259)
T d1xq1a_ 85 GKLDILINNL 94 (259)
T ss_dssp TCCSEEEEEC
T ss_pred CCcccccccc
Confidence 5789888764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.21 E-value=3.7 Score=39.09 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC---CCcEEEEEcChHHH--HHHHHHh--h
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL---EKKIEVFNMDGRRF--IDAMFAS--Q 495 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl---~nrV~~i~gDare~--l~~l~~~--~ 495 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.|++.++.+.+.++.+.. ..++.++.+|+.+. +..+++. .
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 90 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD 90 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 5778887776554 23445556799999999999999888887765422 23588999997543 2222211 1
Q ss_pred cCCcccEEEeCC
Q 007525 496 KAHKITQVVMNL 507 (600)
Q Consensus 496 ~~~~fD~VVmNp 507 (600)
..+..|.+|.|-
T Consensus 91 ~~G~iDiLVnnA 102 (297)
T d1yxma1 91 TFGKINFLVNNG 102 (297)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCeEEEEeec
Confidence 135689888763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.09 E-value=2.7 Score=34.77 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=46.7
Q ss_pred eechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcccEEEeCCC
Q 007525 435 AGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 435 AGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~fD~VVmNpP 508 (600)
||.|.+|..+|+ .|..|+.+|.||+.++.+.+. + .+.++.||+.+. +..+ .-..+|.++.-.+
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-----~--~~~vi~Gd~~~~~~l~~~----~i~~a~~vv~~t~ 74 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----I--DALVINGDCTKIKTLEDA----GIEDADMYIAVTG 74 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----C--SSEEEESCTTSHHHHHHT----TTTTCSEEEECCS
T ss_pred ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-----h--hhhhccCcccchhhhhhc----ChhhhhhhcccCC
Confidence 677999988886 478999999999999877653 2 157899998754 3321 1346888887555
Q ss_pred cc
Q 007525 509 ND 510 (600)
Q Consensus 509 ~~ 510 (600)
..
T Consensus 75 ~d 76 (132)
T d1lssa_ 75 KE 76 (132)
T ss_dssp CH
T ss_pred cH
Confidence 54
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.73 E-value=2.9 Score=38.65 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+|.++|=-|++.| .++..+|+.|++|+.+|.+++.++.+.+.+.. .+++.++.+|+.+. +..+++. ...+
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4677777776554 34556667799999999999998888776532 34689999998543 2222211 1135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|-|-
T Consensus 82 ~iDiLVnnA 90 (251)
T d1zk4a1 82 PVSTLVNNA 90 (251)
T ss_dssp SCCEEEECC
T ss_pred CceEEEecc
Confidence 789888653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.59 E-value=0.57 Score=41.40 Aligned_cols=101 Identities=13% Similarity=-0.059 Sum_probs=61.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE---cC--hHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN---MD--GRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~---gD--are~l~~l~~~~ 495 (600)
+++|++|+=.||| +|.+++.+|+. | .+|+++|.+++-++.+++ .|.. .+++ .| ..+.... .
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~---~~i~~~~~d~~~~~~~~~-~--- 93 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICE-K--- 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHH-H---
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc---EEEcCCCchhHHHHHHHH-h---
Confidence 8899999999886 55666666664 6 499999999999988765 4544 2333 23 2222221 1
Q ss_pred cCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 496 KAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+..+|+|+-.--. ...+......++.+ .+.+-+..+...
T Consensus 94 ~~~G~d~vid~~g~--~~~~~~~~~~~~~~-------~G~~v~vG~~~~ 133 (174)
T d1p0fa2 94 TNGGVDYAVECAGR--IETMMNALQSTYCG-------SGVTVVLGLASP 133 (174)
T ss_dssp TTSCBSEEEECSCC--HHHHHHHHHTBCTT-------TCEEEECCCCCT
T ss_pred cCCCCcEEEEcCCC--chHHHHHHHHHHHh-------cCceEEEEEecC
Confidence 24568988765322 23444555555442 146666666543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.04 E-value=0.69 Score=40.18 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=62.9
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.+++|++|+=.||| +|.+++.+|+. |++++++|.+++-.+.+++ .|.+ .+++..-.+.... ....+
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~-----~~~~~ 94 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAA-----HLKSF 94 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHT-----TTTCE
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHH-----hcCCC
Confidence 37899999988875 67788888874 8899999999998877654 4543 3444433332211 23568
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.++-.-... .-+..+..+++++ +++.++...
T Consensus 95 D~vid~~g~~--~~~~~~~~~l~~~--------G~iv~~G~~ 126 (168)
T d1uufa2 95 DFILNTVAAP--HNLDDFTTLLKRD--------GTMTLVGAP 126 (168)
T ss_dssp EEEEECCSSC--CCHHHHHTTEEEE--------EEEEECCCC
T ss_pred ceeeeeeecc--hhHHHHHHHHhcC--------CEEEEeccC
Confidence 9777543221 1245666777764 567766654
|